AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121500 MtrunA17_Chr1g0180551 92.213 488 24 1 1 474 70 557 0.0 893
Msa0121500 MtrunA17_Chr1g0180541 73.116 491 108 3 1 474 1 484 0.0 712
Msa0121500 MtrunA17_Chr4g0028411 54.054 481 188 7 13 474 12 478 3.89e-173 499
Msa0121500 MtrunA17_Chr2g0327341 50.418 478 207 8 13 474 12 475 2.76e-154 451
Msa0121500 MtrunA17_Chr1g0157401 39.331 478 266 7 13 474 27 496 2.15e-103 321
Msa0121500 MtrunA17_Chr8g0353341 40.329 486 256 12 13 474 24 499 5.02e-101 314
Msa0121500 MtrunA17_Chr5g0409771 35.700 493 272 9 6 474 20 491 1.61e-92 292
Msa0121500 MtrunA17_Chr4g0039791 37.678 491 271 8 4 474 22 497 1.12e-90 288
Msa0121500 MtrunA17_Chr5g0409791 37.097 496 259 11 4 465 19 495 2.84e-88 282
Msa0121500 MtrunA17_Chr1g0197391 38.994 477 249 13 21 474 45 502 3.26e-87 279
Msa0121500 MtrunA17_Chr4g0072561 38.066 486 258 13 13 474 18 484 1.87e-84 271
Msa0121500 MtrunA17_Chr3g0116271 37.447 470 239 14 32 474 53 494 5.78e-82 265
Msa0121500 MtrunA17_Chr5g0395431 35.614 497 268 15 7 474 50 523 8.57e-82 265
Msa0121500 MtrunA17_Chr1g0186071 38.771 472 239 12 25 474 49 492 2.27e-79 258
Msa0121500 MtrunA17_Chr3g0116251 35.881 471 242 14 32 474 54 492 1.30e-76 251
Msa0121500 MtrunA17_Chr4g0000461 35.185 486 279 11 9 474 8 477 9.44e-75 246
Msa0121500 MtrunA17_Chr3g0102411 31.315 479 280 12 22 474 22 477 7.83e-73 241
Msa0121500 MtrunA17_Chr1g0157431 35.174 344 216 5 13 355 27 364 9.14e-55 192
Msa0121500 MtrunA17_Chr2g0334131 42.922 219 107 4 272 474 3 219 4.81e-44 157
Msa0121500 MtrunA17_Chr2g0292471 26.556 482 276 16 44 472 21 477 1.83e-31 127
Msa0121500 MtrunA17_Chr6g0471921 26.638 473 303 13 56 507 32 481 3.11e-29 120
Msa0121500 MtrunA17_Chr3g0109731 24.056 503 311 16 21 474 3 483 8.90e-26 111
Msa0121500 MtrunA17_Chr5g0396331 25.152 493 302 19 25 476 11 477 1.37e-21 98.2
Msa0121500 MtrunA17_Chr7g0252691 22.343 461 296 14 55 466 205 652 2.20e-21 98.2
Msa0121500 MtrunA17_Chr5g0433241 24.746 493 316 14 23 476 6 482 3.29e-21 97.1
Msa0121500 MtrunA17_Chr8g0370701 28.289 456 254 19 68 476 94 523 1.07e-20 95.5
Msa0121500 MtrunA17_Chr1g0205711 27.609 297 157 12 195 445 259 543 1.26e-20 95.5
Msa0121500 MtrunA17_Chr2g0301671 22.424 495 331 13 19 474 11 491 2.46e-20 94.4
Msa0121500 MtrunA17_Chr5g0433231 25.714 490 303 16 28 476 14 483 8.15e-19 89.7
Msa0121500 MtrunA17_Chr2g0334121 28.837 215 142 5 1 212 1 207 4.19e-18 83.2
Msa0121500 MtrunA17_Chr4g0028451 51.807 83 19 2 410 471 10 92 5.40e-18 79.7
Msa0121500 MtrunA17_Chr5g0396311 23.171 492 315 13 25 476 11 479 1.09e-16 82.8
Msa0121500 MtrunA17_Chr5g0406681 22.958 453 292 16 68 480 80 515 3.22e-16 81.6
Msa0121500 MtrunA17_Chr5g0396711 22.907 454 266 18 57 445 80 514 9.08e-16 80.5
Msa0121500 MtrunA17_Chr4g0068151 22.200 491 337 15 19 474 11 491 1.68e-15 79.3
Msa0121500 MtrunA17_Chr6g0471311 25.255 491 306 16 28 476 14 485 2.51e-15 79.0
Msa0121500 MtrunA17_Chr4g0033141 25.694 288 181 11 195 455 675 956 2.54e-15 79.7
Msa0121500 MtrunA17_Chr5g0396691 22.788 452 269 17 57 445 80 514 5.49e-15 77.8
Msa0121500 MtrunA17_Chr8g0377991 33.083 133 79 3 305 436 445 568 4.67e-14 75.1
Msa0121500 MtrunA17_Chr3g0121951 35.870 92 55 1 344 435 473 560 8.67e-12 67.8
Msa0121500 MtrunA17_Chr4g0028441 64.583 48 15 2 229 276 5 50 1.05e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121500 AT4G05160.1 52.720 478 201 8 13 474 12 480 9.18e-170 491
Msa0121500 AT1G20510.1 38.703 478 265 8 12 474 16 480 1.97e-102 318
Msa0121500 AT1G20510.2 38.641 471 261 8 12 467 16 473 1.75e-100 311
Msa0121500 AT1G20480.1 39.344 488 270 10 3 474 24 501 3.59e-98 308
Msa0121500 AT1G20500.1 39.918 486 248 11 12 474 22 486 5.72e-97 304
Msa0121500 AT4G19010.1 37.854 494 262 12 6 474 25 498 2.52e-94 298
Msa0121500 AT5G38120.3 36.492 496 268 11 3 474 14 486 1.03e-91 290
Msa0121500 AT5G38120.1 36.492 496 268 11 3 474 14 486 2.23e-91 290
Msa0121500 AT1G20510.3 37.931 435 256 7 12 445 16 437 1.89e-90 285
Msa0121500 AT5G38120.4 36.196 489 265 11 3 467 14 479 7.41e-89 281
Msa0121500 AT5G38120.2 36.196 489 265 11 3 467 14 479 7.41e-89 281
Msa0121500 AT1G65060.1 35.306 507 280 12 13 491 35 521 1.21e-84 273
Msa0121500 AT5G63380.1 36.238 505 259 18 6 474 17 494 9.64e-84 270
Msa0121500 AT3G21240.1 35.366 492 282 11 3 474 15 490 2.04e-82 266
Msa0121500 AT3G21240.2 35.537 484 276 11 3 466 15 482 3.88e-82 264
Msa0121500 AT3G21240.3 35.537 484 276 11 3 466 15 482 3.88e-82 264
Msa0121500 AT1G65060.2 35.666 443 255 10 13 445 35 457 3.47e-76 248
Msa0121500 AT1G20490.2 37.530 421 243 10 12 427 22 427 3.87e-75 244
Msa0121500 AT1G20490.1 37.530 421 243 10 12 427 22 427 3.87e-75 244
Msa0121500 AT3G21230.3 36.511 493 263 13 13 473 29 503 4.46e-74 244
Msa0121500 AT3G21230.2 36.626 486 258 13 13 466 29 496 8.65e-74 242
Msa0121500 AT3G21230.1 36.511 493 263 13 13 473 29 503 9.26e-74 244
Msa0121500 AT1G51680.3 34.879 496 278 11 7 474 19 497 2.76e-72 239
Msa0121500 AT1G51680.1 34.879 496 278 11 7 474 19 497 4.98e-72 239
Msa0121500 AT1G51680.2 35.041 488 272 11 7 466 19 489 5.45e-72 237
Msa0121500 AT1G62940.1 31.723 476 285 11 21 474 19 476 5.90e-68 228
Msa0121500 AT3G21230.4 34.856 416 235 12 13 410 29 426 1.33e-49 177
Msa0121500 AT1G30520.2 27.009 448 269 14 68 474 45 475 5.32e-34 135
Msa0121500 AT1G30520.1 27.009 448 269 14 68 474 45 475 5.32e-34 135
Msa0121500 AT3G48990.1 29.424 469 282 15 69 509 45 492 9.56e-31 125
Msa0121500 AT1G30520.3 26.847 406 253 13 68 446 45 433 2.00e-30 124
Msa0121500 AT1G30520.4 26.847 406 253 13 68 446 45 433 2.00e-30 124
Msa0121500 AT3G16170.1 25.097 514 294 19 35 489 72 553 2.03e-26 113
Msa0121500 AT1G65890.1 23.596 534 326 19 26 503 10 517 3.48e-25 109
Msa0121500 AT1G76290.1 25.610 492 294 17 25 474 11 472 3.62e-24 106
Msa0121500 AT1G65880.1 24.547 497 307 18 26 476 10 484 1.28e-23 105
Msa0121500 AT1G77240.1 26.854 499 300 16 22 476 5 482 3.73e-23 103
Msa0121500 AT1G21540.1 26.667 435 276 13 74 476 61 484 6.05e-23 102
Msa0121500 AT1G21530.1 24.943 441 271 14 74 476 61 479 1.74e-22 101
Msa0121500 AT1G21530.2 24.379 443 273 13 74 476 61 481 2.71e-22 100
Msa0121500 AT1G66120.1 23.992 496 311 14 26 476 10 484 2.97e-21 97.8
Msa0121500 AT1G20560.1 24.194 496 309 15 25 476 13 485 5.20e-21 97.1
Msa0121500 AT5G36880.4 23.077 455 300 13 55 466 147 594 5.98e-21 97.1
Msa0121500 AT1G64400.1 23.494 498 293 20 16 445 38 515 8.71e-21 96.7
Msa0121500 AT5G36880.2 23.077 455 300 13 55 466 197 644 1.05e-20 96.3
Msa0121500 AT5G36880.6 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0121500 AT5G36880.3 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0121500 AT5G36880.5 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0121500 AT5G36880.1 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0121500 AT5G27600.1 23.941 472 259 18 44 445 105 546 1.44e-19 92.8
Msa0121500 AT4G23850.1 23.810 462 274 19 47 445 69 515 2.87e-18 88.6
Msa0121500 AT2G47240.4 28.197 305 152 13 195 445 162 453 4.49e-18 87.8
Msa0121500 AT2G47240.1 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0121500 AT2G47240.2 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0121500 AT2G47240.3 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0121500 AT3G05970.1 27.027 296 160 12 195 445 262 546 2.56e-16 82.4
Msa0121500 AT3G23790.1 32.680 153 92 4 286 436 423 566 5.83e-16 81.6
Msa0121500 AT1G20560.2 25.140 358 206 14 156 476 75 407 1.44e-15 79.7
Msa0121500 AT2G17650.1 25.437 515 301 20 17 476 53 539 3.16e-15 79.0
Msa0121500 AT3G16910.1 21.130 478 337 13 29 472 21 492 3.81e-15 78.6
Msa0121500 AT4G11030.1 22.198 455 268 16 57 445 81 515 1.90e-14 76.6
Msa0121500 AT1G75960.1 23.984 492 307 17 28 476 14 481 2.15e-14 76.3
Msa0121500 AT4G14070.1 36.134 119 66 3 319 436 473 582 1.55e-12 70.5

Find 167 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGAATGATTTCAATTT+TGG 0.042770 1_3:-47352294 None:intergenic
CGAATCAATTAGGGGAAATT+TGG 0.173843 1_3:+47353494 Msa0121500:CDS
ATGTTTGCAAACTAACAATT+TGG 0.209952 1_3:-47353456 None:intergenic
TGGCGGCGGTGGAGAAGTTT+AGG 0.233984 1_3:+47352117 Msa0121500:CDS
CCCCTTCCACCGAATCAATT+AGG 0.246857 1_3:+47353484 Msa0121500:CDS
TGAGAGCTCTGGCGAGTTTC+CGG 0.259522 1_3:+47351827 Msa0121500:CDS
GGAGCCTTCCTTTCGAATTC+AGG 0.261357 1_3:+47353400 Msa0121500:CDS
GCCGGTGGTGCTGCTCCTCT+TGG 0.301131 1_3:+47352236 Msa0121500:CDS
TGATTTAACTTATATAATAC+TGG 0.302438 1_3:+47351719 Msa0121500:CDS
GGTTAGGGATTCACCGGTTT+GGG 0.304144 1_3:-47351430 None:intergenic
CGTCCAACCCTGATCATTAA+TGG 0.305183 1_3:-47353744 None:intergenic
CCCTTCCACCGAATCAATTA+GGG 0.305642 1_3:+47353485 Msa0121500:CDS
GCCCAAAATTGAAATCATTC+AGG 0.312101 1_3:+47352292 Msa0121500:CDS
CTTTCGAATTCAGGTTCAAC+TGG 0.317770 1_3:+47353409 Msa0121500:CDS
GAAAGGAAGGCTCCTTCCTT+TGG 0.318775 1_3:-47353391 None:intergenic
ATCTTTCCCGTGGGTGACTT+TGG 0.320822 1_3:-47355997 None:intergenic
CATCCTGAAATTTCTGATGC+TGG 0.321468 1_3:+47354399 Msa0121500:CDS
ACGAGTTTGTTTCTAATGTT+TGG 0.328406 1_3:+47351775 Msa0121500:CDS
GGAAGGTTGATGGGTGGTCT+TGG 0.333086 1_3:-47351327 None:intergenic
TTTCGAGTTGGCAGAAGGTT+AGG 0.336094 1_3:-47351446 None:intergenic
GATACCGTCACAACAAGTTT+AGG 0.338287 1_3:-47351663 None:intergenic
CATGGCGGGTAGATTTGATT+TGG 0.339507 1_3:+47352085 Msa0121500:CDS
GGCGGCGGTGGAGAAGTTTA+GGG 0.357431 1_3:+47352118 Msa0121500:CDS
GCGGTGATTCTGTATTCTTC+AGG 0.365718 1_3:+47351870 Msa0121500:CDS
CGTCACAACAAGTTTAGGTT+TGG 0.369581 1_3:-47351658 None:intergenic
ACCTAACTCCATACGTTTAC+CGG 0.370893 1_3:+47351542 Msa0121500:CDS
GATCAGGGTTGGACGCTTAC+CGG 0.372482 1_3:+47353752 Msa0121500:CDS
CTGATAAGTGGGAAGGTTGA+TGG 0.381985 1_3:-47351337 None:intergenic
GAAGAATGTGTTCCTTTGTT+TGG 0.382457 1_3:+47351989 Msa0121500:CDS
ATCCTGAAATTTCTGATGCT+GGG 0.385883 1_3:+47354400 Msa0121500:CDS
ATGACCATTGTTACAAGTTA+CGG 0.388411 1_3:-47356157 None:intergenic
TGTTTGCAAACTAACAATTT+GGG 0.388733 1_3:-47353455 None:intergenic
AACTGGAACCTCACCAGCTT+TGG 0.389995 1_3:-47354521 None:intergenic
CACCGGTTTGGGCGTCGGTA+AGG 0.391259 1_3:-47351419 None:intergenic
ATCTTACCTTGCATCATAAC+AGG 0.391547 1_3:-47353526 None:intergenic
ACCTCACCAGCTTTGGCATC+AGG 0.397512 1_3:-47354514 None:intergenic
TGGACGCTTACCGGCGATCT+TGG 0.400441 1_3:+47353761 Msa0121500:CDS
CAAATTTCCCCTAATTGATT+CGG 0.406286 1_3:-47353493 None:intergenic
GTTATAACAAATTAGTGCCT+TGG 0.407796 1_3:+47356065 Msa0121500:exon
GGCGATGGTGTCAGCGGCGG+AGG 0.411671 1_3:-47351397 None:intergenic
GGTGTCAGCGGCGGAGGAAG+TGG 0.414516 1_3:-47351391 None:intergenic
AAAACAGACCATTAATGATC+AGG 0.419353 1_3:+47353736 Msa0121500:CDS
TAATACTGGACGATGAATCT+TGG 0.426049 1_3:+47351733 Msa0121500:CDS
TAACAATGGTCATCAAGATA+TGG 0.427193 1_3:+47356167 Msa0121500:three_prime_UTR
AATAGCAGGAGTGGCGGATC+AGG 0.430936 1_3:+47351950 Msa0121500:CDS
TAGAGAAAGGTTCTGATAAG+TGG 0.433288 1_3:-47351349 None:intergenic
GGGTAATTGTGGCAGGGGTA+TGG 0.436534 1_3:+47353331 Msa0121500:intron
CCGGTGGTGCTGCTCCTCTT+GGG 0.441068 1_3:+47352237 Msa0121500:CDS
CCCAAGAGGAGCAGCACCAC+CGG 0.446490 1_3:-47352237 None:intergenic
ACAATTTGGGATTCTACACT+TGG 0.446736 1_3:-47353442 None:intergenic
AGGCACCACGGGGAAAAGTA+AGG 0.446955 1_3:+47351890 Msa0121500:CDS
ACCGGTTTGGGCGTCGGTAA+GGG 0.447969 1_3:-47351418 None:intergenic
AGGTTAGGGATTCACCGGTT+TGG 0.448089 1_3:-47351431 None:intergenic
GGAGAAGACTTTGGCGGCGG+TGG 0.450963 1_3:+47352106 Msa0121500:CDS
TTCGAGTTGGCAGAAGGTTA+GGG 0.452011 1_3:-47351445 None:intergenic
CCCTAATTGATTCGGTGGAA+GGG 0.455832 1_3:-47353485 None:intergenic
CTGTATTCTTCAGGCACCAC+GGG 0.457302 1_3:+47351879 Msa0121500:CDS
CTCTGCAGATGTCAAAGTTA+TGG 0.458733 1_3:+47356092 Msa0121500:three_prime_UTR
TCCCGCTCATTTCTCAGTCT+CGG 0.460011 1_3:+47351486 Msa0121500:CDS
ACCCCAGCATCAGAAATTTC+AGG 0.460523 1_3:-47354402 None:intergenic
GCCCTTACCGACGCCCAAAC+CGG 0.463330 1_3:+47351417 Msa0121500:CDS
AGGGAACACGGTGGTGTCCA+TGG 0.465521 1_3:+47352067 Msa0121500:CDS
AGAGAAAGGTTCTGATAAGT+GGG 0.471019 1_3:-47351348 None:intergenic
CCCCTAATTGATTCGGTGGA+AGG 0.472230 1_3:-47353486 None:intergenic
GTTTGTTGCTCCGCCGGTGA+TGG 0.473291 1_3:+47352151 Msa0121500:CDS
AACACGGTGGTGTCCATGGC+GGG 0.473934 1_3:+47352071 Msa0121500:CDS
TTGGGCGTCGGTAAGGGCGA+TGG 0.476304 1_3:-47351412 None:intergenic
AACCTTCTGCCAACTCGAAA+CGG 0.477160 1_3:+47351449 Msa0121500:CDS
GACTGAGAAATGAGCGGGAG+AGG 0.478041 1_3:-47351482 None:intergenic
ATTTGATTTGGAGAAGACTT+TGG 0.479820 1_3:+47352097 Msa0121500:CDS
CCTAATTGATTCGGTGGAAG+GGG 0.482338 1_3:-47353484 None:intergenic
TCCGCCGGTGATGGTGGAGC+TGG 0.483210 1_3:+47352160 Msa0121500:CDS
TCCAGGTTGCACCATACAAA+AGG 0.483621 1_3:+47355944 Msa0121500:intron
TGATAAGTGGGAAGGTTGAT+GGG 0.483728 1_3:-47351336 None:intergenic
AGCAAGTCTTCAAGTTCAGC+AGG 0.491846 1_3:-47354369 None:intergenic
TTCCTCGCTGTTGCCGCCAT+AGG 0.493585 1_3:+47351570 Msa0121500:CDS
ACCGGTAAACGTATGGAGTT+AGG 0.495154 1_3:-47351543 None:intergenic
ATGTCGGATTGCAAAACAAC+CGG 0.496839 1_3:-47351846 None:intergenic
ACATTTGTTTGTTGCTCCGC+CGG 0.502423 1_3:+47352145 Msa0121500:CDS
TTCATAGCGACGGCAATAGC+AGG 0.503335 1_3:+47351936 Msa0121500:CDS
GGATTCACCGGTTTGGGCGT+CGG 0.506800 1_3:-47351424 None:intergenic
GAGAAATGAGCGGGAGAGGT+AGG 0.508726 1_3:-47351478 None:intergenic
GTCAAAGTTATGGTCTCTGC+AGG 0.513064 1_3:+47356102 Msa0121500:three_prime_UTR
AGAGGAATGAAGTTAGAGAA+AGG 0.520769 1_3:-47351362 None:intergenic
CGGAGGAAGTGGATTGGAAG+AGG 0.525231 1_3:-47351380 None:intergenic
GGTGGTAGCAATAGCACCTA+TGG 0.528120 1_3:-47351586 None:intergenic
GCAGAAGGTTAGGGATTCAC+CGG 0.528186 1_3:-47351436 None:intergenic
TCGCTGAAGCAGCTCGCCGG+TGG 0.528672 1_3:+47352221 Msa0121500:CDS
AGGTCTCCTGATGCCAAAGC+TGG 0.530769 1_3:+47354508 Msa0121500:intron
CTTTCTTAAAATCTTTCCCG+TGG 0.531023 1_3:-47356007 None:intergenic
TGTTGCTCCGCCGGTGATGG+TGG 0.535849 1_3:+47352154 Msa0121500:CDS
GACGGTGTACAAAGGACTAC+AGG 0.539868 1_3:-47351607 None:intergenic
TCGTCGCTGAAGCAGCTCGC+CGG 0.540204 1_3:+47352218 Msa0121500:CDS
GATGCATCACGTGATGGGAT+TGG 0.541122 1_3:+47352016 Msa0121500:CDS
TGATTTGGAGAAGACTTTGG+CGG 0.542218 1_3:+47352100 Msa0121500:CDS
GCTGGTCAAGCGGCGTGAGG+TGG 0.543332 1_3:+47352178 Msa0121500:CDS
GGTGCCGATGCATCACGTGA+TGG 0.544878 1_3:+47352010 Msa0121500:CDS
TGGTGCTACGAAGATCTTGT+CGG 0.546238 1_3:+47351795 Msa0121500:CDS
AATCCCATCACGTGATGCAT+CGG 0.546519 1_3:-47352014 None:intergenic
GTGCCGATGCATCACGTGAT+GGG 0.546854 1_3:+47352011 Msa0121500:CDS
TCCGAGACTGAGAAATGAGC+GGG 0.546926 1_3:-47351487 None:intergenic
GAAACAGACCGGTAAACGTA+TGG 0.547736 1_3:-47351550 None:intergenic
GACATCTGCAGAGCCTTCCA+AGG 0.548064 1_3:-47356082 None:intergenic
CAGCGGCGGAGGAAGTGGAT+TGG 0.552751 1_3:-47351386 None:intergenic
ATTTCCCCTAATTGATTCGG+TGG 0.554045 1_3:-47353490 None:intergenic
GGAGAGTTGTGTGAGAGCTC+TGG 0.554408 1_3:+47351816 Msa0121500:CDS
ATCCGTTTCGAGTTGGCAGA+AGG 0.554945 1_3:-47351451 None:intergenic
CAGTTGAACCTGAATTCGAA+AGG 0.558487 1_3:-47353408 None:intergenic
TAACAAATTAGTGCCTTGGA+AGG 0.559737 1_3:+47356069 Msa0121500:exon
TTGACCAGCTCCACCATCAC+CGG 0.560201 1_3:-47352164 None:intergenic
AAGGGCGATGGTGTCAGCGG+CGG 0.563973 1_3:-47351400 None:intergenic
AAACAGACCATTAATGATCA+GGG 0.568415 1_3:+47353737 Msa0121500:CDS
CAAATCAAATCTACCCGCCA+TGG 0.574751 1_3:-47352084 None:intergenic
TCCTGAAATTTCTGATGCTG+GGG 0.576358 1_3:+47354401 Msa0121500:CDS
CAAACCTAAACTTGTTGTGA+CGG 0.577024 1_3:+47351659 Msa0121500:CDS
ATCAAAATATCCAAGATCGC+CGG 0.578056 1_3:-47353771 None:intergenic
TATTCCGTAACTTGTAACAA+TGG 0.582581 1_3:+47356153 Msa0121500:three_prime_UTR
CGAGGACCTGTTATGATGCA+AGG 0.582930 1_3:+47353520 Msa0121500:CDS
GTTGATGGGTGGTCTTGGTG+AGG 0.585069 1_3:-47351322 None:intergenic
AAAGGTTCTGATAAGTGGGA+AGG 0.585265 1_3:-47351344 None:intergenic
GGAGCTGGTCAAGCGGCGTG+AGG 0.585465 1_3:+47352175 Msa0121500:CDS
AGGAGACATCCGTTTCGAGT+TGG 0.586270 1_3:-47351458 None:intergenic
TTGCACCATACAAAAGGTTG+CGG 0.587147 1_3:+47355950 Msa0121500:CDS
AGGGAGTGATGTTGACTCAC+GGG 0.587908 1_3:+47351910 Msa0121500:CDS
TGAACCTGAATTCGAAAGGA+AGG 0.588263 1_3:-47353404 None:intergenic
TTTGGAGAAGACTTTGGCGG+CGG 0.592605 1_3:+47352103 Msa0121500:CDS
AGCGACGGCAATAGCAGGAG+TGG 0.599340 1_3:+47351941 Msa0121500:CDS
TCTGTATTCTTCAGGCACCA+CGG 0.602344 1_3:+47351878 Msa0121500:CDS
GCAGCTGAGGAGAGGGAACA+CGG 0.604601 1_3:+47352055 Msa0121500:CDS
TCAAGATATGGTGTTACCAG+TGG 0.605112 1_3:+47356179 Msa0121500:three_prime_UTR
AGACCATTAATGATCAGGGT+TGG 0.605610 1_3:+47353741 Msa0121500:CDS
ACCAGCTCCACCATCACCGG+CGG 0.605994 1_3:-47352161 None:intergenic
TGCATCAAATCTTTCCCAAG+AGG 0.606362 1_3:-47352251 None:intergenic
TATACACGCAGCTGAGGAGA+GGG 0.608385 1_3:+47352048 Msa0121500:CDS
GGCACCACGGGGAAAAGTAA+GGG 0.608988 1_3:+47351891 Msa0121500:CDS
TTGCTTCCTGAGTTCAGAGA+CGG 0.611491 1_3:-47351625 None:intergenic
TTTCTTAAAATCTTTCCCGT+GGG 0.617584 1_3:-47356006 None:intergenic
AAGGGAGTGATGTTGACTCA+CGG 0.619938 1_3:+47351909 Msa0121500:CDS
TGATATTATACACGCAGCTG+AGG 0.621129 1_3:+47352042 Msa0121500:CDS
TTATACACGCAGCTGAGGAG+AGG 0.622735 1_3:+47352047 Msa0121500:CDS
GATGCATCGGCACCAAACAA+AGG 0.622737 1_3:-47352001 None:intergenic
AAGATTCCAAAGTCACCCAC+GGG 0.626293 1_3:+47355991 Msa0121500:CDS
AAGCGGCGTGAGGTGGTGAG+CGG 0.631498 1_3:+47352185 Msa0121500:CDS
CTCAGTCTCGGAATCAAACG+AGG 0.634490 1_3:+47351498 Msa0121500:CDS
TGATGGTGGAGCTGGTCAAG+CGG 0.634922 1_3:+47352168 Msa0121500:CDS
GAAGATTCCAAAGTCACCCA+CGG 0.635112 1_3:+47355990 Msa0121500:CDS
AGTTCAGAGACGGTGTACAA+AGG 0.638197 1_3:-47351615 None:intergenic
TGTACACCGTCTCTGAACTC+AGG 0.639183 1_3:+47351619 Msa0121500:CDS
GCATCACGTGATGGGATTGG+CGG 0.641987 1_3:+47352019 Msa0121500:CDS
GACGGCAATAGCAGGAGTGG+CGG 0.649833 1_3:+47351944 Msa0121500:CDS
GGTAAGGGCGATGGTGTCAG+CGG 0.651773 1_3:-47351403 None:intergenic
GAACACGGTGGTGTCCATGG+CGG 0.655795 1_3:+47352070 Msa0121500:CDS
TCACGGGAACTTCATAGCGA+CGG 0.662847 1_3:+47351926 Msa0121500:CDS
CACCTATGGCGGCAACAGCG+AGG 0.669323 1_3:-47351572 None:intergenic
GGTAGCAATAGCACCTATGG+CGG 0.670387 1_3:-47351583 None:intergenic
TTCCGAGACTGAGAAATGAG+CGG 0.681783 1_3:-47351488 None:intergenic
GCAACAGCGAGGAAACAGAC+CGG 0.684023 1_3:-47351561 None:intergenic
TTAGGGGAAATTTGGCTACG+AGG 0.686700 1_3:+47353502 Msa0121500:CDS
TCTCTGCAGGAACAGTGAGG+AGG 0.692371 1_3:+47356115 Msa0121500:three_prime_UTR
TGTATTCTTCAGGCACCACG+GGG 0.712806 1_3:+47351880 Msa0121500:CDS
TATGGCATGACTGAAGCATG+CGG 0.715652 1_3:+47353349 Msa0121500:CDS
ATACAGAATCACCGCCATGT+CGG 0.718108 1_3:-47351862 None:intergenic
TAAGTGGGAAGGTTGATGGG+TGG 0.720375 1_3:-47351333 None:intergenic
CCTTCCACCGAATCAATTAG+GGG 0.722238 1_3:+47353486 Msa0121500:CDS
GGTGTACAAAGGACTACAGG+TGG 0.723283 1_3:-47351604 None:intergenic
TGGTCTCTGCAGGAACAGTG+AGG 0.724884 1_3:+47356112 Msa0121500:three_prime_UTR
GCTGAGGAGAGGGAACACGG+TGG 0.809300 1_3:+47352058 Msa0121500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAAAATAAAAAAATA+TGG - chr1_3:47354228-47354247 None:intergenic 0.0%
!! ATAAATAAGATTAAAATCTA+AGG + chr1_3:47354016-47354035 Msa0121500:intron 10.0%
!! TAAATAAGATTAAAATCTAA+GGG + chr1_3:47354017-47354036 Msa0121500:intron 10.0%
!!! TTGTATAAAATAATTACTTT+TGG + chr1_3:47354635-47354654 Msa0121500:intron 10.0%
!! TTACAAATAAAATTAACATT+AGG + chr1_3:47355080-47355099 Msa0121500:intron 10.0%
!!! ATATTTTAAATTTGACTATA+TGG + chr1_3:47355104-47355123 Msa0121500:intron 10.0%
!!! GTTTAATATTTCATTTTTTT+AGG - chr1_3:47355146-47355165 None:intergenic 10.0%
!!! TAGAAATGAAATTTTAATAT+CGG + chr1_3:47355627-47355646 Msa0121500:intron 10.0%
!!! TGATTTAACTTATATAATAC+TGG + chr1_3:47351719-47351738 Msa0121500:CDS 15.0%
!!! TTTTATCATTCCATAAATTT+AGG + chr1_3:47353079-47353098 Msa0121500:intron 15.0%
!! ATTTCATATCTTAATGATAT+TGG + chr1_3:47353254-47353273 Msa0121500:intron 15.0%
!!! TTATATCACATATTTTTTTC+AGG + chr1_3:47353689-47353708 Msa0121500:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr1_3:47354851-47354870 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr1_3:47354850-47354869 Msa0121500:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr1_3:47354874-47354893 Msa0121500:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr1_3:47354977-47354996 Msa0121500:intron 15.0%
!!! AAGGTTTTATTTAATATATG+AGG + chr1_3:47355225-47355244 Msa0121500:intron 15.0%
!! AATATCATTCACATTAAATT+AGG - chr1_3:47355293-47355312 None:intergenic 15.0%
!! AATTTAATGTGAATGATATT+CGG + chr1_3:47355293-47355312 Msa0121500:intron 15.0%
!!! TTTAATTTTGTTTATGTTGA+TGG + chr1_3:47355591-47355610 Msa0121500:intron 15.0%
!! GAATTATACATACTTAATCA+CGG + chr1_3:47352364-47352383 Msa0121500:intron 20.0%
!! CAAAACATAAAATTTACATG+AGG + chr1_3:47352493-47352512 Msa0121500:intron 20.0%
!!! ATCAGAGTGTTAATTTTTTT+TGG - chr1_3:47352666-47352685 None:intergenic 20.0%
!! TACGCAAATTATTAAAAACT+TGG - chr1_3:47352771-47352790 None:intergenic 20.0%
!! AATTTAGTGTCCTAAATTTA+TGG - chr1_3:47353092-47353111 None:intergenic 20.0%
!!! ATTATATTGGAAGCATAATA+TGG + chr1_3:47353150-47353169 Msa0121500:intron 20.0%
!!! GTTTTTCCTTTATAAGAAAA+CGG + chr1_3:47353861-47353880 Msa0121500:intron 20.0%
!!! TTATTGGCTAACATTAATTT+CGG - chr1_3:47353932-47353951 None:intergenic 20.0%
!!! TACAAACTTTAACTTTAATG+AGG + chr1_3:47354263-47354282 Msa0121500:intron 20.0%
!!! TCATACACATTTTCATTATT+AGG + chr1_3:47354341-47354360 Msa0121500:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr1_3:47354860-47354879 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr1_3:47354937-47354956 Msa0121500:intron 20.0%
!! TTAGATTGATCTTGAATTAA+AGG + chr1_3:47355533-47355552 Msa0121500:intron 20.0%
!! GAACTCTTCAAAAATTTTGA+AGG + chr1_3:47351687-47351706 Msa0121500:CDS 25.0%
!!! CTTCAAAAATTTTGAAGGAT+TGG + chr1_3:47351692-47351711 Msa0121500:CDS 25.0%
!! ACCTGAATGATTTCAATTTT+GGG - chr1_3:47352296-47352315 None:intergenic 25.0%
!! TACCTGAATGATTTCAATTT+TGG - chr1_3:47352297-47352316 None:intergenic 25.0%
! TAAAATTTACATGAGGTATG+AGG + chr1_3:47352500-47352519 Msa0121500:intron 25.0%
! AAAATTTACATGAGGTATGA+GGG + chr1_3:47352501-47352520 Msa0121500:intron 25.0%
! ATAATACTTGACTAACATTG+TGG + chr1_3:47352524-47352543 Msa0121500:intron 25.0%
! TCTTGCATAAGGAAAAAATT+TGG + chr1_3:47352873-47352892 Msa0121500:intron 25.0%
!!! ATTGACTGACTTTTATACAA+CGG + chr1_3:47352952-47352971 Msa0121500:intron 25.0%
! TCAATTTAATCCATTTGTCT+GGG + chr1_3:47353014-47353033 Msa0121500:intron 25.0%
! CTAAATTGACAAATCATGAA+TGG + chr1_3:47353056-47353075 Msa0121500:intron 25.0%
! TCTGAATGAGTGTATTATAT+TGG + chr1_3:47353137-47353156 Msa0121500:intron 25.0%
! TCACAAACAATTCATTACAT+GGG - chr1_3:47353302-47353321 None:intergenic 25.0%
! ATCACAAACAATTCATTACA+TGG - chr1_3:47353303-47353322 None:intergenic 25.0%
! GTAATGAATTGTTTGTGATA+TGG + chr1_3:47353304-47353323 Msa0121500:intron 25.0%
! AATTGTTTGTGATATGGTAT+GGG + chr1_3:47353310-47353329 Msa0121500:intron 25.0%
!!! TGTTTCTTTTGAAAATCCAA+AGG + chr1_3:47353375-47353394 Msa0121500:CDS 25.0%
! TGTTTGCAAACTAACAATTT+GGG - chr1_3:47353458-47353477 None:intergenic 25.0%
! ATGTTTGCAAACTAACAATT+TGG - chr1_3:47353459-47353478 None:intergenic 25.0%
! TAAGTTTCATGCAAACTAAT+AGG - chr1_3:47353648-47353667 None:intergenic 25.0%
!!! CTTGGATATTTTGATGAAAA+AGG + chr1_3:47353779-47353798 Msa0121500:CDS 25.0%
!! TATTGGCTAACATTAATTTC+GGG - chr1_3:47353931-47353950 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG - chr1_3:47354084-47354103 None:intergenic 25.0%
!! ATATCTAGCATTTTCCAAAA+CGG + chr1_3:47354090-47354109 Msa0121500:intron 25.0%
!!! TCTCTATATGATTTTGAGTT+AGG + chr1_3:47354115-47354134 Msa0121500:intron 25.0%
!! CAAAACAAAGTCATATTTTG+TGG + chr1_3:47354171-47354190 Msa0121500:intron 25.0%
!! TACACATTTTCATTATTAGG+TGG + chr1_3:47354344-47354363 Msa0121500:intron 25.0%
! CTAGATGAAAATATGACTTA+CGG - chr1_3:47354432-47354451 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr1_3:47354817-47354836 Msa0121500:intron 25.0%
!! TTGTTGAAACCATATTGATT+TGG + chr1_3:47355699-47355718 Msa0121500:intron 25.0%
!!! CATATTGATTTGGTTTAGTT+CGG + chr1_3:47355709-47355728 Msa0121500:intron 25.0%
!!! TACGGTTTGATTTAGTTTTA+AGG - chr1_3:47355807-47355826 None:intergenic 25.0%
! TATGAGATTAAGAATGTTTG+TGG - chr1_3:47355830-47355849 None:intergenic 25.0%
! ACAATATTGTTTGATCATGA+GGG - chr1_3:47355858-47355877 None:intergenic 25.0%
!! ACGAGTTTGTTTCTAATGTT+TGG + chr1_3:47351775-47351794 Msa0121500:CDS 30.0%
!! ATTTGATTTGGAGAAGACTT+TGG + chr1_3:47352097-47352116 Msa0121500:CDS 30.0%
ATGAGAGAAACTGAGTTAAA+TGG + chr1_3:47352425-47352444 Msa0121500:intron 30.0%
TTCCAAATTATACCATTGGT+GGG - chr1_3:47352579-47352598 None:intergenic 30.0%
TTTGAACTTGAGACTTCAAT+CGG + chr1_3:47352699-47352718 Msa0121500:intron 30.0%
CGTATTGAATATGTTCGAAA+TGG + chr1_3:47352787-47352806 Msa0121500:intron 30.0%
TGAATATGTTCGAAATGGAT+TGG + chr1_3:47352792-47352811 Msa0121500:intron 30.0%
GCATAAGGAAAAAATTTGGT+TGG + chr1_3:47352877-47352896 Msa0121500:intron 30.0%
TCAATGACTAATCTCTATTG+AGG - chr1_3:47352937-47352956 None:intergenic 30.0%
CTCAATTTAATCCATTTGTC+TGG + chr1_3:47353013-47353032 Msa0121500:intron 30.0%
GACACTAAATTATCCAACTT+AGG + chr1_3:47353101-47353120 Msa0121500:intron 30.0%
! TCACTATTTTCATCCTAAGT+TGG - chr1_3:47353117-47353136 None:intergenic 30.0%
GAATTGTTTGTGATATGGTA+TGG + chr1_3:47353309-47353328 Msa0121500:intron 30.0%
ATTGTTTGTGATATGGTATG+GGG + chr1_3:47353311-47353330 Msa0121500:intron 30.0%
!! TCTTTTGAAAATCCAAAGGA+AGG + chr1_3:47353379-47353398 Msa0121500:CDS 30.0%
CAAATTTCCCCTAATTGATT+CGG - chr1_3:47353496-47353515 None:intergenic 30.0%
AAAACAGACCATTAATGATC+AGG + chr1_3:47353736-47353755 Msa0121500:CDS 30.0%
AAACAGACCATTAATGATCA+GGG + chr1_3:47353737-47353756 Msa0121500:CDS 30.0%
! AAAGAGTTGATCAAGTGTAA+CGG + chr1_3:47353827-47353846 Msa0121500:intron 30.0%
TGATGAATTCAAGAATGACA+TGG - chr1_3:47354054-47354073 None:intergenic 30.0%
! ATCATATAGAGAAACCGTTT+TGG - chr1_3:47354107-47354126 None:intergenic 30.0%
TTAGGTTCAAATACTTTCTC+TGG + chr1_3:47354133-47354152 Msa0121500:intron 30.0%
ATAGTGTAAACATGCATAAG+AGG - chr1_3:47354473-47354492 None:intergenic 30.0%
ACTATTCTATTTACCATCTC+AGG + chr1_3:47354488-47354507 Msa0121500:intron 30.0%
CAAGAAATTTGTAGCAAAAG+AGG + chr1_3:47354591-47354610 Msa0121500:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr1_3:47354768-47354787 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr1_3:47354769-47354788 Msa0121500:intron 30.0%
AGTGTGAGATAGAAATCTTA+AGG + chr1_3:47355206-47355225 Msa0121500:intron 30.0%
ATGCTTTCGACTTAATAAGT+CGG - chr1_3:47355440-47355459 None:intergenic 30.0%
! TATGTTGATGGATACATTGT+TGG + chr1_3:47355603-47355622 Msa0121500:intron 30.0%
TCAATATGGTTTCAACAATG+CGG - chr1_3:47355697-47355716 None:intergenic 30.0%
CGAACTAAACCAAATCAATA+TGG - chr1_3:47355711-47355730 None:intergenic 30.0%
GATTAAGAATGTTTGTGGTA+CGG - chr1_3:47355825-47355844 None:intergenic 30.0%
GACAATATTGTTTGATCATG+AGG - chr1_3:47355859-47355878 None:intergenic 30.0%
!! TAGCAAATGAAAGTGTTTGA+AGG + chr1_3:47355880-47355899 Msa0121500:intron 30.0%
!! AAATGAAAGTGTTTGAAGGT+TGG + chr1_3:47355884-47355903 Msa0121500:intron 30.0%
TTTCTTAAAATCTTTCCCGT+GGG - chr1_3:47356009-47356028 None:intergenic 30.0%
GTTATAACAAATTAGTGCCT+TGG + chr1_3:47356065-47356084 Msa0121500:exon 30.0%
! TATTCCGTAACTTGTAACAA+TGG + chr1_3:47356153-47356172 Msa0121500:three_prime_UTR 30.0%
ATGACCATTGTTACAAGTTA+CGG - chr1_3:47356160-47356179 None:intergenic 30.0%
TAACAATGGTCATCAAGATA+TGG + chr1_3:47356167-47356186 Msa0121500:three_prime_UTR 30.0%
! AGAGAAAGGTTCTGATAAGT+GGG - chr1_3:47351351-47351370 None:intergenic 35.0%
! TAGAGAAAGGTTCTGATAAG+TGG - chr1_3:47351352-47351371 None:intergenic 35.0%
AGAGGAATGAAGTTAGAGAA+AGG - chr1_3:47351365-47351384 None:intergenic 35.0%
!! CAAACCTAAACTTGTTGTGA+CGG + chr1_3:47351659-47351678 Msa0121500:CDS 35.0%
TAATACTGGACGATGAATCT+TGG + chr1_3:47351733-47351752 Msa0121500:CDS 35.0%
GAAGAATGTGTTCCTTTGTT+TGG + chr1_3:47351989-47352008 Msa0121500:CDS 35.0%
GCCCAAAATTGAAATCATTC+AGG + chr1_3:47352292-47352311 Msa0121500:CDS 35.0%
TACTTGACTAACATTGTGGT+TGG + chr1_3:47352528-47352547 Msa0121500:intron 35.0%
TCCAAATTATACCATTGGTG+GGG - chr1_3:47352578-47352597 None:intergenic 35.0%
GTTCCAAATTATACCATTGG+TGG - chr1_3:47352580-47352599 None:intergenic 35.0%
!! ATGGATTGGTCCAAATTGTA+AGG + chr1_3:47352806-47352825 Msa0121500:intron 35.0%
!! TGGATTGGTCCAAATTGTAA+GGG + chr1_3:47352807-47352826 Msa0121500:intron 35.0%
ATCTCTATTGAGGAACTTGT+GGG - chr1_3:47352927-47352946 None:intergenic 35.0%
AATCTCTATTGAGGAACTTG+TGG - chr1_3:47352928-47352947 None:intergenic 35.0%
! ACAATTTGGGATTCTACACT+TGG - chr1_3:47353445-47353464 None:intergenic 35.0%
CGAATCAATTAGGGGAAATT+TGG + chr1_3:47353494-47353513 Msa0121500:CDS 35.0%
ATCTTACCTTGCATCATAAC+AGG - chr1_3:47353529-47353548 None:intergenic 35.0%
ATCAAAATATCCAAGATCGC+CGG - chr1_3:47353774-47353793 None:intergenic 35.0%
AAAAGGACAACTATTTGTCG+TGG + chr1_3:47353796-47353815 Msa0121500:intron 35.0%
! AAGAGTTGATCAAGTGTAAC+GGG + chr1_3:47353828-47353847 Msa0121500:intron 35.0%
! GCTCAACCGTTTTCTTATAA+AGG - chr1_3:47353870-47353889 None:intergenic 35.0%
AAATACTTTCTCTGGTCTCT+CGG + chr1_3:47354141-47354160 Msa0121500:intron 35.0%
ATCCTGAAATTTCTGATGCT+GGG + chr1_3:47354400-47354419 Msa0121500:CDS 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG + chr1_3:47354899-47354918 Msa0121500:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG + chr1_3:47354903-47354922 Msa0121500:intron 35.0%
! AAGCGACACTCATTTTGAAT+CGG + chr1_3:47355003-47355022 Msa0121500:intron 35.0%
GGTTGCTCTTTGATCTAATA+TGG + chr1_3:47355378-47355397 Msa0121500:intron 35.0%
!! GAAAGCATTCTTGACAATGA+TGG + chr1_3:47355452-47355471 Msa0121500:intron 35.0%
! TTAGTTCATTTTCTTCCTCC+AGG + chr1_3:47355927-47355946 Msa0121500:intron 35.0%
CTTTCTTAAAATCTTTCCCG+TGG - chr1_3:47356010-47356029 None:intergenic 35.0%
!! CACGGGAAAGATTTTAAGAA+AGG + chr1_3:47356008-47356027 Msa0121500:CDS 35.0%
TAACAAATTAGTGCCTTGGA+AGG + chr1_3:47356069-47356088 Msa0121500:exon 35.0%
! AAAAAAACAAAGCACTCCAC+TGG - chr1_3:47356198-47356217 None:intergenic 35.0%
! AGGAATACGTCAACGTTTTG+AGG - chr1_3:47351305-47351324 None:intergenic 40.0%
! TGATAAGTGGGAAGGTTGAT+GGG - chr1_3:47351339-47351358 None:intergenic 40.0%
! AAAGGTTCTGATAAGTGGGA+AGG - chr1_3:47351347-47351366 None:intergenic 40.0%
ACCTAACTCCATACGTTTAC+CGG + chr1_3:47351542-47351561 Msa0121500:CDS 40.0%
! CGTCACAACAAGTTTAGGTT+TGG - chr1_3:47351661-47351680 None:intergenic 40.0%
GATACCGTCACAACAAGTTT+AGG - chr1_3:47351666-47351685 None:intergenic 40.0%
ATGTCGGATTGCAAAACAAC+CGG - chr1_3:47351849-47351868 None:intergenic 40.0%
TGATATTATACACGCAGCTG+AGG + chr1_3:47352042-47352061 Msa0121500:CDS 40.0%
! TGATTTGGAGAAGACTTTGG+CGG + chr1_3:47352100-47352119 Msa0121500:CDS 40.0%
TGCATCAAATCTTTCCCAAG+AGG - chr1_3:47352254-47352273 None:intergenic 40.0%
!! AACATTGTGGTTGGTGACAT+TGG + chr1_3:47352537-47352556 Msa0121500:intron 40.0%
! TGACATTGGTGACAACACAA+AGG + chr1_3:47352551-47352570 Msa0121500:intron 40.0%
ACCCCACCAATGGTATAATT+TGG + chr1_3:47352574-47352593 Msa0121500:intron 40.0%
CGGGTTCCAAATTATACCAT+TGG - chr1_3:47352583-47352602 None:intergenic 40.0%
!! GGATTGGTCCAAATTGTAAG+GGG + chr1_3:47352808-47352827 Msa0121500:intron 40.0%
CGATTTCTGTCTCTTGCATA+AGG + chr1_3:47352862-47352881 Msa0121500:intron 40.0%
!! GACTGACTTTTATACAACGG+TGG + chr1_3:47352955-47352974 Msa0121500:intron 40.0%
ATCTTAGACTCCCAGACAAA+TGG - chr1_3:47353027-47353046 None:intergenic 40.0%
AGATGCATACTACATCATGC+AGG + chr1_3:47353187-47353206 Msa0121500:intron 40.0%
GATATGGTATGGGGTAATTG+TGG + chr1_3:47353320-47353339 Msa0121500:intron 40.0%
TGAACCTGAATTCGAAAGGA+AGG - chr1_3:47353407-47353426 None:intergenic 40.0%
CAGTTGAACCTGAATTCGAA+AGG - chr1_3:47353411-47353430 None:intergenic 40.0%
! CTTTCGAATTCAGGTTCAAC+TGG + chr1_3:47353409-47353428 Msa0121500:CDS 40.0%
!! ATTTCCCCTAATTGATTCGG+TGG - chr1_3:47353493-47353512 None:intergenic 40.0%
!! ATGGTCTGTTTTGTTGCTTC+TGG - chr1_3:47353728-47353747 None:intergenic 40.0%
AGACCATTAATGATCAGGGT+TGG + chr1_3:47353741-47353760 Msa0121500:CDS 40.0%
CATCCTGAAATTTCTGATGC+TGG + chr1_3:47354399-47354418 Msa0121500:CDS 40.0%
TCCTGAAATTTCTGATGCTG+GGG + chr1_3:47354401-47354420 Msa0121500:CDS 40.0%
!! GGATGGAGTATTTTCAAGAG+AGG - chr1_3:47354747-47354766 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG - chr1_3:47354764-47354783 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG + chr1_3:47354902-47354921 Msa0121500:intron 40.0%
! GACACTCATTTTGAATCGGA+GGG + chr1_3:47355007-47355026 Msa0121500:intron 40.0%
TGTGGTTGCTCTTGATTATG+TGG + chr1_3:47355262-47355281 Msa0121500:intron 40.0%
! GGATTTTCCTCATGACTCAA+AGG + chr1_3:47355314-47355333 Msa0121500:intron 40.0%
CTCAAAACCTTTGAGTCATG+AGG - chr1_3:47355324-47355343 None:intergenic 40.0%
TGATGTTTCTCTCACTTGTG+TGG + chr1_3:47355357-47355376 Msa0121500:intron 40.0%
TAATAAGTCGGTCGAATCCT+GGG - chr1_3:47355428-47355447 None:intergenic 40.0%
TTAATAAGTCGGTCGAATCC+TGG - chr1_3:47355429-47355448 None:intergenic 40.0%
ACATGTCTCGTTGATGTGAA+TGG + chr1_3:47355482-47355501 Msa0121500:intron 40.0%
ATGGTTTCAACAATGCGGTT+TGG - chr1_3:47355692-47355711 None:intergenic 40.0%
TTGCACCATACAAAAGGTTG+CGG + chr1_3:47355950-47355969 Msa0121500:CDS 40.0%
CTCTGCAGATGTCAAAGTTA+TGG + chr1_3:47356092-47356111 Msa0121500:three_prime_UTR 40.0%
!! TCAAGATATGGTGTTACCAG+TGG + chr1_3:47356179-47356198 Msa0121500:three_prime_UTR 40.0%
CTGATAAGTGGGAAGGTTGA+TGG - chr1_3:47351340-47351359 None:intergenic 45.0%
!! TTCGAGTTGGCAGAAGGTTA+GGG - chr1_3:47351448-47351467 None:intergenic 45.0%
!! TTTCGAGTTGGCAGAAGGTT+AGG - chr1_3:47351449-47351468 None:intergenic 45.0%
AACCTTCTGCCAACTCGAAA+CGG + chr1_3:47351449-47351468 Msa0121500:CDS 45.0%
TTCCGAGACTGAGAAATGAG+CGG - chr1_3:47351491-47351510 None:intergenic 45.0%
ACCGGTAAACGTATGGAGTT+AGG - chr1_3:47351546-47351565 None:intergenic 45.0%
GAAACAGACCGGTAAACGTA+TGG - chr1_3:47351553-47351572 None:intergenic 45.0%
AGTTCAGAGACGGTGTACAA+AGG - chr1_3:47351618-47351637 None:intergenic 45.0%
TTGCTTCCTGAGTTCAGAGA+CGG - chr1_3:47351628-47351647 None:intergenic 45.0%
!! TGGTGCTACGAAGATCTTGT+CGG + chr1_3:47351795-47351814 Msa0121500:CDS 45.0%
!! GGTTGTTTTGCAATCCGACA+TGG + chr1_3:47351848-47351867 Msa0121500:CDS 45.0%
! TGTTTTGCAATCCGACATGG+CGG + chr1_3:47351851-47351870 Msa0121500:CDS 45.0%
ATACAGAATCACCGCCATGT+CGG - chr1_3:47351865-47351884 None:intergenic 45.0%
GCGGTGATTCTGTATTCTTC+AGG + chr1_3:47351870-47351889 Msa0121500:CDS 45.0%
TCTGTATTCTTCAGGCACCA+CGG + chr1_3:47351878-47351897 Msa0121500:CDS 45.0%
!! AAGGGAGTGATGTTGACTCA+CGG + chr1_3:47351909-47351928 Msa0121500:CDS 45.0%
!!! GTGGCGGATCAGGATTTTTA+CGG + chr1_3:47351960-47351979 Msa0121500:CDS 45.0%
! GATCAGGATTTTTACGGCGA+GGG + chr1_3:47351966-47351985 Msa0121500:CDS 45.0%
! ATCAGGATTTTTACGGCGAG+GGG + chr1_3:47351967-47351986 Msa0121500:CDS 45.0%
AATCCCATCACGTGATGCAT+CGG - chr1_3:47352017-47352036 None:intergenic 45.0%
CAAATCAAATCTACCCGCCA+TGG - chr1_3:47352087-47352106 None:intergenic 45.0%
!! CATGGCGGGTAGATTTGATT+TGG + chr1_3:47352085-47352104 Msa0121500:CDS 45.0%
! ACATTTGTTTGTTGCTCCGC+CGG + chr1_3:47352145-47352164 Msa0121500:CDS 45.0%
CTTGTGACGGTAGAGAATTC+GGG - chr1_3:47352602-47352621 None:intergenic 45.0%
GCTTGTGACGGTAGAGAATT+CGG - chr1_3:47352603-47352622 None:intergenic 45.0%
TCTTGACCATGTGCTTGTGA+CGG - chr1_3:47352615-47352634 None:intergenic 45.0%
AGACTTCAATCGGACGATCA+TGG + chr1_3:47352709-47352728 Msa0121500:intron 45.0%
TGACTTTGTGTCGCAAGTGA+CGG + chr1_3:47352737-47352756 Msa0121500:intron 45.0%
GTCCAAATTGTAAGGGGCTT+GGG + chr1_3:47352814-47352833 Msa0121500:intron 45.0%
AGGAACTTGTGGGACACATA+AGG - chr1_3:47352917-47352936 None:intergenic 45.0%
TATGGCATGACTGAAGCATG+CGG + chr1_3:47353349-47353368 Msa0121500:CDS 45.0%
!! CCTAATTGATTCGGTGGAAG+GGG - chr1_3:47353487-47353506 None:intergenic 45.0%
!! CCCTAATTGATTCGGTGGAA+GGG - chr1_3:47353488-47353507 None:intergenic 45.0%
CCCTTCCACCGAATCAATTA+GGG + chr1_3:47353485-47353504 Msa0121500:CDS 45.0%
CCTTCCACCGAATCAATTAG+GGG + chr1_3:47353486-47353505 Msa0121500:CDS 45.0%
TTAGGGGAAATTTGGCTACG+AGG + chr1_3:47353502-47353521 Msa0121500:CDS 45.0%
CGTCCAACCCTGATCATTAA+TGG - chr1_3:47353747-47353766 None:intergenic 45.0%
CAATAAAATCTCAGCCTGCC+CGG + chr1_3:47353946-47353965 Msa0121500:intron 45.0%
! AGCAAGTCTTCAAGTTCAGC+AGG - chr1_3:47354372-47354391 None:intergenic 45.0%
ACCCCAGCATCAGAAATTTC+AGG - chr1_3:47354405-47354424 None:intergenic 45.0%
GAGCGAACAACAAAAGCAAC+TGG - chr1_3:47354541-47354560 None:intergenic 45.0%
! CGACACTCATTTTGAATCGG+AGG + chr1_3:47355006-47355025 Msa0121500:intron 45.0%
GAGGTGTATAACTCACTGTG+TGG + chr1_3:47355244-47355263 Msa0121500:intron 45.0%
! TTTTGTATGGTGCAACCTGG+AGG - chr1_3:47355945-47355964 None:intergenic 45.0%
TCCAGGTTGCACCATACAAA+AGG + chr1_3:47355944-47355963 Msa0121500:intron 45.0%
! ACCTTTTGTATGGTGCAACC+TGG - chr1_3:47355948-47355967 None:intergenic 45.0%
GAAGATTCCAAAGTCACCCA+CGG + chr1_3:47355990-47356009 Msa0121500:CDS 45.0%
AAGATTCCAAAGTCACCCAC+GGG + chr1_3:47355991-47356010 Msa0121500:CDS 45.0%
GTCAAAGTTATGGTCTCTGC+AGG + chr1_3:47356102-47356121 Msa0121500:three_prime_UTR 45.0%
!!! TTTAATATTTCATTTTTTTA+GGG - chr1_3:47355145-47355164 None:intergenic 5.0%
!! TAAGTGGGAAGGTTGATGGG+TGG - chr1_3:47351336-47351355 None:intergenic 50.0%
!! GGTTAGGGATTCACCGGTTT+GGG - chr1_3:47351433-47351452 None:intergenic 50.0%
! AGGTTAGGGATTCACCGGTT+TGG - chr1_3:47351434-47351453 None:intergenic 50.0%
GCAGAAGGTTAGGGATTCAC+CGG - chr1_3:47351439-47351458 None:intergenic 50.0%
!! ATCCGTTTCGAGTTGGCAGA+AGG - chr1_3:47351454-47351473 None:intergenic 50.0%
! AGGAGACATCCGTTTCGAGT+TGG - chr1_3:47351461-47351480 None:intergenic 50.0%
TCCCGCTCATTTCTCAGTCT+CGG + chr1_3:47351486-47351505 Msa0121500:CDS 50.0%
TCCGAGACTGAGAAATGAGC+GGG - chr1_3:47351490-47351509 None:intergenic 50.0%
CTCAGTCTCGGAATCAAACG+AGG + chr1_3:47351498-47351517 Msa0121500:CDS 50.0%
GGTAGCAATAGCACCTATGG+CGG - chr1_3:47351586-47351605 None:intergenic 50.0%
GGTGGTAGCAATAGCACCTA+TGG - chr1_3:47351589-47351608 None:intergenic 50.0%
GGTGTACAAAGGACTACAGG+TGG - chr1_3:47351607-47351626 None:intergenic 50.0%
GACGGTGTACAAAGGACTAC+AGG - chr1_3:47351610-47351629 None:intergenic 50.0%
TGTACACCGTCTCTGAACTC+AGG + chr1_3:47351619-47351638 Msa0121500:CDS 50.0%
CTGTATTCTTCAGGCACCAC+GGG + chr1_3:47351879-47351898 Msa0121500:CDS 50.0%
TGTATTCTTCAGGCACCACG+GGG + chr1_3:47351880-47351899 Msa0121500:CDS 50.0%
!! AGGGAGTGATGTTGACTCAC+GGG + chr1_3:47351910-47351929 Msa0121500:CDS 50.0%
TCACGGGAACTTCATAGCGA+CGG + chr1_3:47351926-47351945 Msa0121500:CDS 50.0%
TTCATAGCGACGGCAATAGC+AGG + chr1_3:47351936-47351955 Msa0121500:CDS 50.0%
! GGATCAGGATTTTTACGGCG+AGG + chr1_3:47351965-47351984 Msa0121500:CDS 50.0%
! GATGCATCGGCACCAAACAA+AGG - chr1_3:47352004-47352023 None:intergenic 50.0%
! GATGCATCACGTGATGGGAT+TGG + chr1_3:47352016-47352035 Msa0121500:CDS 50.0%
TTATACACGCAGCTGAGGAG+AGG + chr1_3:47352047-47352066 Msa0121500:CDS 50.0%
TATACACGCAGCTGAGGAGA+GGG + chr1_3:47352048-47352067 Msa0121500:CDS 50.0%
TTTGGAGAAGACTTTGGCGG+CGG + chr1_3:47352103-47352122 Msa0121500:CDS 50.0%
AACACAAAGGACCCCACCAA+TGG + chr1_3:47352564-47352583 Msa0121500:intron 50.0%
TCTCTACCGTCACAAGCACA+TGG + chr1_3:47352606-47352625 Msa0121500:intron 50.0%
GACTTTGTGTCGCAAGTGAC+GGG + chr1_3:47352738-47352757 Msa0121500:intron 50.0%
GGTCCAAATTGTAAGGGGCT+TGG + chr1_3:47352813-47352832 Msa0121500:intron 50.0%
AGCCCAAGCCCCTTACAATT+TGG - chr1_3:47352819-47352838 None:intergenic 50.0%
TGGTATGGGGTAATTGTGGC+AGG + chr1_3:47353324-47353343 Msa0121500:intron 50.0%
GGTATGGGGTAATTGTGGCA+GGG + chr1_3:47353325-47353344 Msa0121500:intron 50.0%
GTATGGGGTAATTGTGGCAG+GGG + chr1_3:47353326-47353345 Msa0121500:intron 50.0%
GAAAGGAAGGCTCCTTCCTT+TGG - chr1_3:47353394-47353413 None:intergenic 50.0%
GGAGCCTTCCTTTCGAATTC+AGG + chr1_3:47353400-47353419 Msa0121500:CDS 50.0%
CCCCTTCCACCGAATCAATT+AGG + chr1_3:47353484-47353503 Msa0121500:CDS 50.0%
!! CCCCTAATTGATTCGGTGGA+AGG - chr1_3:47353489-47353508 None:intergenic 50.0%
CGAGGACCTGTTATGATGCA+AGG + chr1_3:47353520-47353539 Msa0121500:CDS 50.0%
! CGGGCAGGCTGAGATTTTAT+TGG - chr1_3:47353948-47353967 None:intergenic 50.0%
AACTGGAACCTCACCAGCTT+TGG - chr1_3:47354524-47354543 None:intergenic 50.0%
!! TGGGTCATGAGGAGCATTTG+GGG - chr1_3:47355409-47355428 None:intergenic 50.0%
!! CTGGGTCATGAGGAGCATTT+GGG - chr1_3:47355410-47355429 None:intergenic 50.0%
! ACTCGCCGCAACCTTTTGTA+TGG - chr1_3:47355958-47355977 None:intergenic 50.0%
ATCTTTCCCGTGGGTGACTT+TGG - chr1_3:47356000-47356019 None:intergenic 50.0%
! GTTGATGGGTGGTCTTGGTG+AGG - chr1_3:47351325-47351344 None:intergenic 55.0%
!! GGAAGGTTGATGGGTGGTCT+TGG - chr1_3:47351330-47351349 None:intergenic 55.0%
!! CGGAGGAAGTGGATTGGAAG+AGG - chr1_3:47351383-47351402 None:intergenic 55.0%
GAGAAATGAGCGGGAGAGGT+AGG - chr1_3:47351481-47351500 None:intergenic 55.0%
GACTGAGAAATGAGCGGGAG+AGG - chr1_3:47351485-47351504 None:intergenic 55.0%
GCAACAGCGAGGAAACAGAC+CGG - chr1_3:47351564-47351583 None:intergenic 55.0%
GGAGAGTTGTGTGAGAGCTC+TGG + chr1_3:47351816-47351835 Msa0121500:CDS 55.0%
! TGAGAGCTCTGGCGAGTTTC+CGG + chr1_3:47351827-47351846 Msa0121500:CDS 55.0%
AGGCACCACGGGGAAAAGTA+AGG + chr1_3:47351890-47351909 Msa0121500:CDS 55.0%
GGCACCACGGGGAAAAGTAA+GGG + chr1_3:47351891-47351910 Msa0121500:CDS 55.0%
!! CACTCCCTTACTTTTCCCCG+TGG - chr1_3:47351898-47351917 None:intergenic 55.0%
!! AATAGCAGGAGTGGCGGATC+AGG + chr1_3:47351950-47351969 Msa0121500:CDS 55.0%
! GTGCCGATGCATCACGTGAT+GGG + chr1_3:47352011-47352030 Msa0121500:CDS 55.0%
! GCATCACGTGATGGGATTGG+CGG + chr1_3:47352019-47352038 Msa0121500:CDS 55.0%
TTGACCAGCTCCACCATCAC+CGG - chr1_3:47352167-47352186 None:intergenic 55.0%
!! TGATGGTGGAGCTGGTCAAG+CGG + chr1_3:47352168-47352187 Msa0121500:CDS 55.0%
! TTTGTGTCGCAAGTGACGGG+AGG + chr1_3:47352741-47352760 Msa0121500:intron 55.0%
! TTGTGTCGCAAGTGACGGGA+GGG + chr1_3:47352742-47352761 Msa0121500:intron 55.0%
GGGTAATTGTGGCAGGGGTA+TGG + chr1_3:47353331-47353350 Msa0121500:intron 55.0%
GATCAGGGTTGGACGCTTAC+CGG + chr1_3:47353752-47353771 Msa0121500:CDS 55.0%
TCAGCCTGCCCGGAAATCAT+GGG + chr1_3:47353956-47353975 Msa0121500:intron 55.0%
ACCCACCACCCCATGATTTC+CGG - chr1_3:47353968-47353987 None:intergenic 55.0%
TGGCATCAGGAGACCTGAGA+TGG - chr1_3:47354504-47354523 None:intergenic 55.0%
AGGTCTCCTGATGCCAAAGC+TGG + chr1_3:47354508-47354527 Msa0121500:intron 55.0%
TCCTGATGCCAAAGCTGGTG+AGG + chr1_3:47354513-47354532 Msa0121500:intron 55.0%
! ACCTCACCAGCTTTGGCATC+AGG - chr1_3:47354517-47354536 None:intergenic 55.0%
!! CCTGGGTCATGAGGAGCATT+TGG - chr1_3:47355411-47355430 None:intergenic 55.0%
CCAAATGCTCCTCATGACCC+AGG + chr1_3:47355408-47355427 Msa0121500:intron 55.0%
GACATCTGCAGAGCCTTCCA+AGG - chr1_3:47356085-47356104 None:intergenic 55.0%
TGGTCTCTGCAGGAACAGTG+AGG + chr1_3:47356112-47356131 Msa0121500:three_prime_UTR 55.0%
TCTCTGCAGGAACAGTGAGG+AGG + chr1_3:47356115-47356134 Msa0121500:three_prime_UTR 55.0%
! GGTAAGGGCGATGGTGTCAG+CGG - chr1_3:47351406-47351425 None:intergenic 60.0%
!! ACCGGTTTGGGCGTCGGTAA+GGG - chr1_3:47351421-47351440 None:intergenic 60.0%
!! GGATTCACCGGTTTGGGCGT+CGG - chr1_3:47351427-47351446 None:intergenic 60.0%
TTCCTCGCTGTTGCCGCCAT+AGG + chr1_3:47351570-47351589 Msa0121500:CDS 60.0%
AGCGACGGCAATAGCAGGAG+TGG + chr1_3:47351941-47351960 Msa0121500:CDS 60.0%
GACGGCAATAGCAGGAGTGG+CGG + chr1_3:47351944-47351963 Msa0121500:CDS 60.0%
!! GGTGCCGATGCATCACGTGA+TGG + chr1_3:47352010-47352029 Msa0121500:CDS 60.0%
GCAGCTGAGGAGAGGGAACA+CGG + chr1_3:47352055-47352074 Msa0121500:CDS 60.0%
AGGGAACACGGTGGTGTCCA+TGG + chr1_3:47352067-47352086 Msa0121500:CDS 60.0%
GAACACGGTGGTGTCCATGG+CGG + chr1_3:47352070-47352089 Msa0121500:CDS 60.0%
AACACGGTGGTGTCCATGGC+GGG + chr1_3:47352071-47352090 Msa0121500:CDS 60.0%
TGGCGGCGGTGGAGAAGTTT+AGG + chr1_3:47352117-47352136 Msa0121500:CDS 60.0%
GGCGGCGGTGGAGAAGTTTA+GGG + chr1_3:47352118-47352137 Msa0121500:CDS 60.0%
! GTTTGTTGCTCCGCCGGTGA+TGG + chr1_3:47352151-47352170 Msa0121500:CDS 60.0%
TGGACGCTTACCGGCGATCT+TGG + chr1_3:47353761-47353780 Msa0121500:CDS 60.0%
CTCAGCCTGCCCGGAAATCA+TGG + chr1_3:47353955-47353974 Msa0121500:intron 60.0%
CAGCCTGCCCGGAAATCATG+GGG + chr1_3:47353957-47353976 Msa0121500:intron 60.0%
CCCACCACCCCATGATTTCC+GGG - chr1_3:47353967-47353986 None:intergenic 60.0%
CCCGGAAATCATGGGGTGGT+GGG + chr1_3:47353964-47353983 Msa0121500:intron 60.0%
CGGTCGAATCCTGGGTCATG+AGG - chr1_3:47355420-47355439 None:intergenic 60.0%
CAGCGGCGGAGGAAGTGGAT+TGG - chr1_3:47351389-47351408 None:intergenic 65.0%
! AAGGGCGATGGTGTCAGCGG+CGG - chr1_3:47351403-47351422 None:intergenic 65.0%
!! TTGGGCGTCGGTAAGGGCGA+TGG - chr1_3:47351415-47351434 None:intergenic 65.0%
GCCCTTACCGACGCCCAAAC+CGG + chr1_3:47351417-47351436 Msa0121500:CDS 65.0%
!! CACCGGTTTGGGCGTCGGTA+AGG - chr1_3:47351422-47351441 None:intergenic 65.0%
CACCTATGGCGGCAACAGCG+AGG - chr1_3:47351575-47351594 None:intergenic 65.0%
GCTGAGGAGAGGGAACACGG+TGG + chr1_3:47352058-47352077 Msa0121500:CDS 65.0%
GGAGAAGACTTTGGCGGCGG+TGG + chr1_3:47352106-47352125 Msa0121500:CDS 65.0%
! TGTTGCTCCGCCGGTGATGG+TGG + chr1_3:47352154-47352173 Msa0121500:CDS 65.0%
ACCAGCTCCACCATCACCGG+CGG - chr1_3:47352164-47352183 None:intergenic 65.0%
AAGCGGCGTGAGGTGGTGAG+CGG + chr1_3:47352185-47352204 Msa0121500:CDS 65.0%
TCGTCGCTGAAGCAGCTCGC+CGG + chr1_3:47352218-47352237 Msa0121500:CDS 65.0%
CCCAAGAGGAGCAGCACCAC+CGG - chr1_3:47352240-47352259 None:intergenic 65.0%
!! CCGGTGGTGCTGCTCCTCTT+GGG + chr1_3:47352237-47352256 Msa0121500:CDS 65.0%
CCACCCCATGATTTCCGGGC+AGG - chr1_3:47353963-47353982 None:intergenic 65.0%
CCTGCCCGGAAATCATGGGG+TGG + chr1_3:47353960-47353979 Msa0121500:intron 65.0%
GCCCGGAAATCATGGGGTGG+TGG + chr1_3:47353963-47353982 Msa0121500:intron 65.0%
GGTGTCAGCGGCGGAGGAAG+TGG - chr1_3:47351394-47351413 None:intergenic 70.0%
!! TCCGCCGGTGATGGTGGAGC+TGG + chr1_3:47352160-47352179 Msa0121500:CDS 70.0%
GGAGCTGGTCAAGCGGCGTG+AGG + chr1_3:47352175-47352194 Msa0121500:CDS 70.0%
GCTGGTCAAGCGGCGTGAGG+TGG + chr1_3:47352178-47352197 Msa0121500:CDS 70.0%
TCGCTGAAGCAGCTCGCCGG+TGG + chr1_3:47352221-47352240 Msa0121500:CDS 70.0%
!! GCCGGTGGTGCTGCTCCTCT+TGG + chr1_3:47352236-47352255 Msa0121500:CDS 70.0%
! GGCGATGGTGTCAGCGGCGG+AGG - chr1_3:47351400-47351419 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47351282 47356295 47351282 ID=Msa0121500;Name=Msa0121500
chr1_3 mRNA 47351282 47356295 47351282 ID=Msa0121500-mRNA-1;Parent=Msa0121500;Name=Msa0121500-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.6|0.5|1|1|1|6|216|516
chr1_3 exon 47351282 47352313 47351282 ID=Msa0121500-mRNA-1:exon:14296;Parent=Msa0121500-mRNA-1
chr1_3 exon 47353346 47353541 47353346 ID=Msa0121500-mRNA-1:exon:14297;Parent=Msa0121500-mRNA-1
chr1_3 exon 47353711 47353814 47353711 ID=Msa0121500-mRNA-1:exon:14298;Parent=Msa0121500-mRNA-1
chr1_3 exon 47354363 47354430 47354363 ID=Msa0121500-mRNA-1:exon:14299;Parent=Msa0121500-mRNA-1
chr1_3 exon 47354510 47354529 47354510 ID=Msa0121500-mRNA-1:exon:14300;Parent=Msa0121500-mRNA-1
chr1_3 exon 47355949 47356295 47355949 ID=Msa0121500-mRNA-1:exon:14301;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47351282 47352313 47351282 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47353346 47353541 47353346 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47353711 47353814 47353711 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47354363 47354430 47354363 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47354510 47354529 47354510 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 CDS 47355949 47356079 47355949 ID=Msa0121500-mRNA-1:cds;Parent=Msa0121500-mRNA-1
chr1_3 three_prime_UTR 47356080 47356295 47356080 ID=Msa0121500-mRNA-1:three_prime_utr;Parent=Msa0121500-mRNA-1
Gene Sequence

>Msa0121500

ATGGCGAAAAACTGCTTCAACCTCAAAACGTTGACGTATTCCTCACCAAGACCACCCATCAACCTTCCCACTTATCAGAACCTTTCTCTAACTTCATTCCTCTTCCAATCCACTTCCTCCGCCGCTGACACCATCGCCCTTACCGACGCCCAAACCGGTGAATCCCTAACCTTCTGCCAACTCGAAACGGATGTCTCCTACCTCTCCCGCTCATTTCTCAGTCTCGGAATCAAACGAGGTGACGTCGTTATGCTATACGCACCTAACTCCATACGTTTACCGGTCTGTTTCCTCGCTGTTGCCGCCATAGGTGCTATTGCTACCACCTGTAGTCCTTTGTACACCGTCTCTGAACTCAGGAAGCAACTTGAAGATTCCAAACCTAAACTTGTTGTGACGGTATCAGAACTCTTCAAAAATTTTGAAGGATTGGACTTTGATTTAACTTATATAATACTGGACGATGAATCTTGGACTCGCAGATATACATCAGACGAGTTTGTTTCTAATGTTTGGTGCTACGAAGATCTTGTCGGAGAGTTGTGTGAGAGCTCTGGCGAGTTTCCGGTTGTTTTGCAATCCGACATGGCGGTGATTCTGTATTCTTCAGGCACCACGGGGAAAAGTAAGGGAGTGATGTTGACTCACGGGAACTTCATAGCGACGGCAATAGCAGGAGTGGCGGATCAGGATTTTTACGGCGAGGGGAAGAATGTGTTCCTTTGTTTGGTGCCGATGCATCACGTGATGGGATTGGCGGTGATATTATACACGCAGCTGAGGAGAGGGAACACGGTGGTGTCCATGGCGGGTAGATTTGATTTGGAGAAGACTTTGGCGGCGGTGGAGAAGTTTAGGGTGACACATTTGTTTGTTGCTCCGCCGGTGATGGTGGAGCTGGTCAAGCGGCGTGAGGTGGTGAGCGGTTATGATTTGTCGTCGCTGAAGCAGCTCGCCGGTGGTGCTGCTCCTCTTGGGAAAGATTTGATGCAAGCATGTGCTGAGATTCTGCCCAAAATTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGCGGACTTGTTTCTTTTGAAAATCCAAAGGAAGGAGCCTTCCTTTCGAATTCAGGTTCAACTGGAAAACTAGTTCCAAGTGTAGAATCCCAAATTGTTAGTTTGCAAACATCGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTGTTATGATGCAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATCAGGGTTGGACGCTTACCGGCGATCTTGGATATTTTGATGAAAAAGGACAACTATTTGTCGTGGCACCTGCTGAACTTGAAGACTTGCTAATTTCTCATCCTGAAATTTCTGATGCTGGGGTGATTCCGTCTCCTGATGCCAAAGCTGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAGAGAAGATTCCAAAGTCACCCACGGGAAAGATTTTAAGAAAGGATCTCGTAATTTTAGATCGACAAATGATATCAAAGTTATAACAAATTAG
Protein sequence

>Msa0121500

MAKNCFNLKTLTYSSPRPPINLPTYQNLSLTSFLFQSTSSAADTIALTDAQTGESLTFCQLETDVSYLSRSFLSLGIKRGDVVMLYAPNSIRLPVCFLAVAAIGAIATTCSPLYTVSELRKQLEDSKPKLVVTVSELFKNFEGLDFDLTYIILDDESWTRRYTSDEFVSNVWCYEDLVGELCESSGEFPVVLQSDMAVILYSSGTTGKSKGVMLTHGNFIATAIAGVADQDFYGEGKNVFLCLVPMHHVMGLAVILYTQLRRGNTVVSMAGRFDLEKTLAAVEKFRVTHLFVAPPVMVELVKRREVVSGYDLSSLKQLAGGAAPLGKDLMQACAEILPKIEIIQGYGMTEACGLVSFENPKEGAFLSNSGSTGKLVPSVESQIVSLQTSKPLPPNQLGEIWLRGPVMMQGYFNNPEATKQTINDQGWTLTGDLGYFDEKGQLFVVAPAELEDLLISHPEISDAGVIPSPDAKAGCTIQKVAASDFYREDSKVTHGKDFKKGSRNFRSTNDIKVITN*