AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0510870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510870 MtrunA17_Chr3g0088441 93.396 530 16 2 1 511 1 530 0.0 1016
Msa0510870 MtrunA17_Chr4g0033311 84.181 531 64 3 1 511 1 531 0.0 932
Msa0510870 MtrunA17_Chr4g0033321 68.665 517 139 4 5 502 4 516 0.0 749
Msa0510870 MtrunA17_Chr4g0033401 71.026 497 124 3 25 502 22 517 0.0 746
Msa0510870 MtrunA17_Chr4g0033331 70.648 494 125 3 25 499 27 519 0.0 742
Msa0510870 MtrunA17_Chr2g0329201 66.342 514 147 3 1 495 1 507 0.0 707
Msa0510870 MtrunA17_Chr6g0482131 64.797 517 159 4 1 497 1 514 0.0 694
Msa0510870 MtrunA17_Chr2g0329191 65.294 510 156 4 6 495 1 509 0.0 694
Msa0510870 MtrunA17_Chr4g0033201 62.695 512 169 3 3 495 4 512 0.0 681
Msa0510870 MtrunA17_Chr6g0482071 64.147 516 163 4 1 496 1 514 0.0 677
Msa0510870 MtrunA17_Chr4g0033341 64.542 502 155 4 14 495 45 543 0.0 676
Msa0510870 MtrunA17_Chr4g0033191 62.903 496 165 2 22 498 27 522 0.0 671
Msa0510870 MtrunA17_Chr4g0033271 62.378 513 170 3 2 495 3 511 0.0 669
Msa0510870 MtrunA17_Chr6g0482081 63.689 515 158 6 6 496 5 514 0.0 654
Msa0510870 MtrunA17_Chr2g0329321 60.895 514 156 3 1 495 1 488 0.0 642
Msa0510870 MtrunA17_Chr4g0033261 58.654 520 165 5 1 496 1 494 0.0 607
Msa0510870 MtrunA17_Chr4g0033231 57.916 499 159 5 23 496 22 494 0.0 586
Msa0510870 MtrunA17_Chr5g0430451 57.824 524 166 5 1 495 1 498 0.0 579
Msa0510870 MtrunA17_Chr4g0010501 55.131 497 198 5 18 495 4 494 0.0 555
Msa0510870 MtrunA17_Chr4g0006111 55.375 493 161 9 34 495 61 525 0.0 524
Msa0510870 MtrunA17_Chr3g0087261 51.765 510 218 8 6 495 8 509 1.38e-178 511
Msa0510870 MtrunA17_Chr4g0006131 54.086 514 170 12 15 494 19 500 2.48e-177 508
Msa0510870 MtrunA17_Chr3g0087271 49.902 511 231 6 4 495 6 510 4.06e-171 493
Msa0510870 MtrunA17_Chr4g0043091 49.287 491 220 8 27 494 18 502 3.83e-168 484
Msa0510870 MtrunA17_Chr4g0042171 48.566 488 226 6 32 497 18 502 8.03e-158 459
Msa0510870 MtrunA17_Chr6g0482941 45.669 508 249 8 8 496 14 513 1.07e-149 438
Msa0510870 MtrunA17_Chr6g0482951 44.854 515 249 9 1 496 15 513 8.61e-148 433
Msa0510870 MtrunA17_Chr2g0301231 54.415 419 135 8 106 495 1 392 2.89e-147 427
Msa0510870 MtrunA17_Chr3g0090111 45.455 484 221 10 38 497 19 483 1.98e-144 424
Msa0510870 MtrunA17_Chr3g0090131 44.792 480 231 9 35 494 18 483 2.08e-142 419
Msa0510870 MtrunA17_Chr4g0074561 43.320 494 243 8 43 507 40 525 3.10e-139 412
Msa0510870 MtrunA17_Chr2g0288071 43.487 522 255 9 6 505 49 552 7.44e-139 412
Msa0510870 MtrunA17_Chr2g0317841 44.050 479 238 8 38 493 32 503 6.74e-135 400
Msa0510870 MtrunA17_Chr4g0074551 44.000 475 241 7 43 496 55 525 3.67e-134 400
Msa0510870 MtrunA17_Chr2g0317821 44.676 479 235 8 38 493 32 503 4.20e-134 399
Msa0510870 MtrunA17_Chr3g0087201 57.975 326 129 3 173 495 24 344 9.84e-133 388
Msa0510870 MtrunA17_Chr2g0288021 42.975 484 251 7 37 499 34 513 1.86e-130 389
Msa0510870 MtrunA17_Chr7g0242691 43.154 482 237 9 37 496 30 496 4.17e-129 385
Msa0510870 MtrunA17_Chr7g0242681 43.182 484 227 11 38 494 38 500 6.33e-127 380
Msa0510870 MtrunA17_Chr5g0428831 42.449 490 234 12 32 494 21 489 1.31e-125 376
Msa0510870 MtrunA17_Chr4g0006971 41.667 492 250 9 37 506 26 502 1.19e-123 372
Msa0510870 MtrunA17_Chr1g0195611 40.546 513 249 11 8 494 6 488 3.60e-121 365
Msa0510870 MtrunA17_Chr7g0234091 40.871 482 242 9 39 498 76 536 1.44e-110 338
Msa0510870 MtrunA17_Chr7g0234111 41.213 478 242 8 39 496 76 534 1.94e-108 333
Msa0510870 MtrunA17_Chr7g0234131 40.000 480 240 9 39 493 76 532 4.14e-105 324
Msa0510870 MtrunA17_Chr5g0418871 51.171 299 124 4 57 336 2 297 1.64e-104 316
Msa0510870 MtrunA17_Chr1g0195641 44.898 392 176 10 39 405 28 404 2.09e-103 316
Msa0510870 MtrunA17_Chr7g0230651 43.597 367 172 7 93 440 26 376 4.88e-87 273
Msa0510870 MtrunA17_Chr3g0087191 67.391 138 45 0 35 172 19 156 1.40e-66 212
Msa0510870 MtrunA17_Chr7g0227561 36.330 267 115 6 40 287 48 278 1.39e-46 164
Msa0510870 MtrunA17_Chr7g0236731 42.128 235 110 4 126 340 27 255 1.78e-45 160
Msa0510870 MtrunA17_Chr5g0418861 50.000 90 44 1 405 493 1 90 2.31e-24 97.1
Msa0510870 MtrunA17_Chr4g0068871 25.672 409 212 14 102 485 183 524 3.21e-24 106
Msa0510870 MtrunA17_Chr8g0352881 38.017 121 62 2 233 340 32 152 4.59e-20 87.4
Msa0510870 MtrunA17_Chr8g0352881 48.571 70 35 1 47 116 7 75 2.19e-13 68.2
Msa0510870 MtrunA17_Chr2g0288031 50.847 59 28 1 173 231 3 60 2.20e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0510870 AT2G44480.3 54.717 477 196 3 36 493 64 539 0.0 545
Msa0510870 AT2G44480.1 54.082 490 203 4 25 493 20 508 0.0 544
Msa0510870 AT5G44640.1 52.930 512 210 6 7 498 6 506 0.0 541
Msa0510870 AT5G42260.1 54.076 503 200 6 7 489 6 497 0.0 539
Msa0510870 AT2G44450.1 55.021 478 191 4 38 496 31 503 0.0 536
Msa0510870 AT3G60130.1 53.878 477 195 5 38 494 30 501 3.04e-180 516
Msa0510870 AT2G25630.1 52.731 476 183 6 38 493 30 483 4.09e-173 497
Msa0510870 AT5G24550.1 50.203 492 213 8 38 502 32 518 3.14e-169 489
Msa0510870 AT1G51470.1 50.208 480 206 9 37 495 44 511 3.19e-166 480
Msa0510870 AT3G60120.1 50.000 484 212 9 37 495 13 491 6.41e-165 478
Msa0510870 AT3G60140.1 45.648 517 246 7 1 495 1 504 1.40e-164 479
Msa0510870 AT1G47600.1 49.167 480 211 9 37 495 44 511 1.31e-162 471
Msa0510870 AT1G47600.2 49.167 480 210 9 37 495 44 510 5.45e-162 469
Msa0510870 AT5G24540.1 47.784 519 237 9 9 500 5 516 1.85e-161 469
Msa0510870 AT1G26560.1 47.870 493 218 8 30 493 24 506 5.35e-161 467
Msa0510870 AT5G54570.1 49.480 481 215 6 37 493 29 505 6.39e-161 468
Msa0510870 AT2G44490.1 48.755 482 222 7 37 494 13 493 8.05e-161 468
Msa0510870 AT2G44470.3 47.500 480 229 6 38 495 29 507 1.03e-160 469
Msa0510870 AT2G44480.2 53.317 407 170 3 106 493 1 406 1.15e-158 457
Msa0510870 AT2G44460.1 47.154 492 236 7 34 503 25 514 1.08e-153 451
Msa0510870 AT3G18080.1 48.148 486 225 8 33 498 34 512 2.44e-153 447
Msa0510870 AT3G18070.3 46.444 478 237 8 33 498 25 495 5.47e-152 443
Msa0510870 AT3G60130.2 52.619 420 174 5 95 494 35 449 7.09e-152 442
Msa0510870 AT5G25980.2 44.592 527 262 11 6 509 19 538 1.46e-151 444
Msa0510870 AT3G18070.1 45.868 484 237 8 33 498 25 501 1.10e-150 440
Msa0510870 AT3G60130.3 51.429 420 168 6 95 494 35 438 3.48e-144 422
Msa0510870 AT5G36890.1 45.720 479 228 6 40 498 18 484 4.70e-144 423
Msa0510870 AT5G36890.2 45.720 479 228 6 40 498 18 484 7.02e-144 422
Msa0510870 AT3G21370.1 44.444 486 237 10 37 494 32 512 2.71e-141 417
Msa0510870 AT3G03640.1 42.004 519 272 7 1 495 1 514 5.79e-139 411
Msa0510870 AT1G75940.1 44.581 489 240 10 38 498 37 522 1.55e-138 410
Msa0510870 AT3G09260.1 43.595 484 247 8 38 498 35 515 2.41e-138 410
Msa0510870 AT5G54570.3 48.592 426 192 5 37 439 29 450 6.82e-138 406
Msa0510870 AT2G32860.1 43.271 483 250 7 38 497 94 575 3.88e-136 407
Msa0510870 AT2G32860.2 42.562 484 255 6 37 497 93 576 1.30e-134 403
Msa0510870 AT2G44470.1 45.390 423 209 5 38 439 29 450 2.61e-134 397
Msa0510870 AT5G26000.1 42.389 519 257 13 7 493 3 511 4.32e-133 397
Msa0510870 AT5G28510.1 42.799 493 251 9 29 493 30 519 6.52e-133 396
Msa0510870 AT1G52400.3 41.333 525 271 13 1 496 2 518 1.10e-132 395
Msa0510870 AT1G52400.1 41.333 525 271 13 1 496 2 518 1.10e-132 395
Msa0510870 AT1G61820.1 42.536 489 256 8 33 499 25 510 1.40e-132 395
Msa0510870 AT5G24540.2 48.349 424 196 6 38 439 32 454 2.16e-132 392
Msa0510870 AT1G66280.1 44.668 497 238 13 26 493 22 510 5.45e-131 391
Msa0510870 AT5G54570.2 48.544 412 184 6 106 493 1 408 6.34e-131 387
Msa0510870 AT1G61810.1 43.606 477 244 7 43 497 38 511 7.58e-131 390
Msa0510870 AT1G66270.1 42.998 507 257 11 24 504 21 521 1.07e-130 390
Msa0510870 AT1G02850.2 43.685 483 232 11 35 494 21 486 8.79e-129 384
Msa0510870 AT5G25980.3 44.079 456 227 9 6 440 19 467 9.51e-128 380
Msa0510870 AT5G25980.1 44.079 456 227 9 6 440 19 467 9.51e-128 380
Msa0510870 AT2G44450.2 52.101 357 147 4 159 496 1 352 1.88e-127 375
Msa0510870 AT1G66270.2 42.604 507 257 12 24 504 21 519 5.04e-127 380
Msa0510870 AT3G60140.2 43.529 425 206 6 1 404 1 412 6.35e-127 378
Msa0510870 AT1G61810.3 43.656 465 235 7 43 482 38 500 7.01e-126 378
Msa0510870 AT4G21760.2 40.154 518 278 9 3 499 21 527 6.39e-125 376
Msa0510870 AT4G27830.1 42.236 483 239 9 34 493 19 484 6.97e-125 375
Msa0510870 AT1G02850.5 41.897 506 231 12 35 494 21 509 2.37e-124 374
Msa0510870 AT1G02850.4 42.209 507 229 13 35 494 21 510 4.77e-123 370
Msa0510870 AT1G60090.2 41.358 486 242 10 38 500 24 489 2.67e-122 368
Msa0510870 AT2G44480.4 55.873 315 117 4 25 318 51 364 4.22e-120 358
Msa0510870 AT4G21760.1 39.729 516 273 10 3 499 21 517 1.05e-118 360
Msa0510870 AT4G27820.1 42.708 480 233 9 37 493 22 482 3.28e-118 357
Msa0510870 AT4G22100.1 41.116 484 244 11 40 500 24 489 3.73e-118 357
Msa0510870 AT1G60090.1 39.796 490 251 11 38 500 24 496 4.16e-118 357
Msa0510870 AT1G02850.1 42.236 483 212 12 35 494 21 459 9.57e-118 355
Msa0510870 AT3G62750.1 40.871 482 234 10 35 493 20 473 3.53e-116 352
Msa0510870 AT3G62750.2 40.039 517 256 12 3 493 11 499 8.28e-116 352
Msa0510870 AT5G26000.2 41.810 464 230 11 7 440 3 456 2.79e-114 345
Msa0510870 AT1G45191.4 40.524 496 246 12 39 511 30 499 1.01e-113 346
Msa0510870 AT2G44470.2 47.164 335 156 4 38 352 29 362 2.76e-112 338
Msa0510870 AT1G45191.2 40.121 496 254 12 39 511 30 505 4.33e-112 342
Msa0510870 AT1G45191.6 39.839 497 259 11 39 511 30 510 4.82e-111 339
Msa0510870 AT1G52400.2 40.685 467 241 12 1 439 2 460 7.55e-110 334
Msa0510870 AT1G45191.1 39.448 507 259 12 39 511 30 522 6.03e-109 334
Msa0510870 AT1G51490.1 48.837 344 150 6 45 371 27 361 3.04e-108 328
Msa0510870 AT3G62740.1 38.797 482 249 11 35 493 20 478 5.49e-108 331
Msa0510870 AT2G44480.5 51.678 298 140 2 199 493 6 302 9.83e-108 323
Msa0510870 AT1G61810.5 43.066 411 209 7 109 497 4 411 1.46e-106 325
Msa0510870 AT1G02850.3 42.995 414 182 9 35 404 21 424 9.72e-104 318
Msa0510870 AT1G61810.4 42.969 384 195 6 43 404 38 419 2.43e-101 311
Msa0510870 AT3G18070.4 47.059 323 150 5 33 338 25 343 2.62e-100 307
Msa0510870 AT5G48375.1 40.136 441 177 8 38 458 38 411 4.11e-100 308
Msa0510870 AT2G44460.2 46.883 369 173 6 157 503 1 368 6.93e-100 308
Msa0510870 AT3G62750.4 39.140 465 230 11 3 442 11 447 1.36e-98 305
Msa0510870 AT3G18070.2 45.758 330 171 5 173 498 99 424 3.84e-98 303
Msa0510870 AT3G18070.2 48.529 68 34 1 33 100 25 91 1.43e-13 73.2
Msa0510870 AT4G27830.2 40.389 411 207 8 106 493 1 396 5.28e-96 297
Msa0510870 AT3G62740.2 38.642 427 217 10 35 439 20 423 1.32e-92 289
Msa0510870 AT3G18070.7 45.253 316 165 5 187 498 1 312 2.82e-92 284
Msa0510870 AT1G61820.3 41.081 370 194 7 152 499 4 371 4.95e-92 286
Msa0510870 AT3G62750.7 43.402 341 154 7 35 352 20 344 2.14e-91 284
Msa0510870 AT3G62750.8 43.402 341 154 7 35 352 20 344 2.14e-91 284
Msa0510870 AT1G60270.1 43.516 347 166 7 38 362 24 362 2.22e-91 284
Msa0510870 AT1G45191.5 44.828 319 149 5 39 338 30 340 6.27e-91 284
Msa0510870 AT1G45191.3 44.828 319 149 5 39 338 30 340 1.04e-90 283
Msa0510870 AT3G62750.3 43.109 341 155 6 35 352 46 370 1.56e-90 284
Msa0510870 AT4G27820.2 40.633 411 207 8 106 493 1 397 3.72e-89 280
Msa0510870 AT4G27820.3 40.633 411 207 8 106 493 1 397 3.72e-89 280
Msa0510870 AT3G62750.6 38.200 411 208 9 106 493 1 388 9.72e-86 271
Msa0510870 AT3G62750.5 38.200 411 208 9 106 493 1 388 9.72e-86 271
Msa0510870 AT1G61810.2 49.807 259 112 3 43 285 38 294 6.96e-83 259
Msa0510870 AT1G60270.2 42.599 277 133 6 108 362 3 275 7.68e-66 215
Msa0510870 AT3G18070.5 44.726 237 126 3 174 406 100 335 6.86e-64 211
Msa0510870 AT3G18070.5 48.529 68 34 1 33 100 25 91 8.22e-14 73.2
Msa0510870 AT3G18070.6 43.750 224 121 3 187 406 1 223 2.65e-58 193
Msa0510870 AT5G16580.1 35.739 291 151 9 173 450 32 299 1.76e-44 159
Msa0510870 AT3G06510.2 26.652 454 231 19 88 494 146 544 1.39e-23 105
Msa0510870 AT3G06510.1 25.747 435 225 16 88 494 146 510 3.09e-23 103

Find 105 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTCTTTCAGCGGCTTTC+TGG 0.019364 3_4:+60129439 None:intergenic
CTATGCAGAACTTTGCTTTA+AGG 0.085798 3_4:-60129912 Msa0510870:intron
GTTGATTGATTACAGGTTTA+TGG 0.107499 3_4:-60129172 Msa0510870:intron
TATATATACCTGGATATTTA+TGG 0.130865 3_4:+60131048 None:intergenic
CAATTTCATCAATGAGTTAT+TGG 0.144645 3_4:-60130348 Msa0510870:CDS
GAACTTTGCTTTAAGGAATT+TGG 0.144947 3_4:-60129905 Msa0510870:CDS
TTCCCTAAAGGATTTATATT+TGG 0.182303 3_4:-60131390 Msa0510870:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3_4:-60128632 Msa0510870:intron
TTATTCCTATTACACCATTT+TGG 0.239729 3_4:+60129508 None:intergenic
TAGCTACTTGACAGATTCTT+TGG 0.267402 3_4:-60128974 Msa0510870:CDS
GAATCACCACCGGTGCAATT+TGG 0.269114 3_4:+60129776 None:intergenic
GAAAACCAAAATGGTGTAAT+AGG 0.277571 3_4:-60129513 Msa0510870:CDS
GCTCCAAATATAAATCCTTT+AGG 0.278985 3_4:+60131387 None:intergenic
AGCGGCTTTCTGGTCGGATT+TGG 0.284864 3_4:+60129449 None:intergenic
CGGGAAACCTATCGGTATTA+AGG 0.289992 3_4:-60128823 Msa0510870:intron
CTCCAAATATAAATCCTTTA+GGG 0.310613 3_4:+60131388 None:intergenic
ATCAATGAGTTATTGGCTAA+TGG 0.321569 3_4:-60130341 Msa0510870:intron
CCATGGAGTTACAGTCAAAA+TGG 0.331262 3_4:-60129848 Msa0510870:CDS
TTGGTGATAGAGTGAAATAT+TGG 0.342182 3_4:-60129886 Msa0510870:CDS
GTGGTAGAACACCAAGTATA+TGG 0.346943 3_4:-60131082 Msa0510870:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3_4:-60131119 Msa0510870:intron
ATATATACCTGGATATTTAT+GGG 0.366623 3_4:+60131049 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3_4:+60131493 None:intergenic
TGGTAGTGCGTGACAATATA+GGG 0.377896 3_4:+60129743 None:intergenic
TCGGGTTATTCTGTGAGATT+TGG 0.388933 3_4:-60128224 Msa0510870:CDS
CACCAGGTCGTTGTTCTAGT+TGG 0.391277 3_4:-60129805 Msa0510870:CDS
CTTTGTCTTGTACACATTGA+CGG 0.398620 3_4:+60129700 None:intergenic
TTGGTAGTGCGTGACAATAT+AGG 0.399199 3_4:+60129742 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3_4:+60129706 None:intergenic
AAGTGTCCATGAGCGATTCT+TGG 0.413109 3_4:+60128450 None:intergenic
ACATTTGTGGATTACAAGAA+TGG 0.418146 3_4:-60128197 Msa0510870:CDS
TAATTGCAGTTGAGCGAAAC+GGG 0.418763 3_4:-60128842 Msa0510870:intron
GATAATATAGATGACGATAA+TGG 0.420645 3_4:+60128414 None:intergenic
GAATAACCTTGGTAGCTAAC+TGG 0.426224 3_4:-60129491 Msa0510870:CDS
TGGTGATAGAGTGAAATATT+GGG 0.433375 3_4:-60129885 Msa0510870:CDS
CGATAACTTTGAATGGTGCT+CGG 0.438545 3_4:-60128243 Msa0510870:CDS
AGTAGAAACAGTTTCCCTAA+AGG 0.450974 3_4:-60131402 Msa0510870:CDS
ATATATTATAGGAAGATGTT+AGG 0.454055 3_4:-60130617 Msa0510870:intron
TTTATGGATCCACTTACAAC+AGG 0.454541 3_4:-60129156 Msa0510870:CDS
GGATAATCTCCTGTTGTAAG+TGG 0.456186 3_4:+60129147 None:intergenic
TTTCAGTGATGTAAATCAAC+GGG 0.458785 3_4:+60128636 None:intergenic
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3_4:-60128721 Msa0510870:intron
AGTCAAAATGGCTATGCAAA+TGG 0.462239 3_4:-60129836 Msa0510870:CDS
AAAGGATTTATATTTGGAGC+AGG 0.463085 3_4:-60131384 Msa0510870:CDS
GGTCTAGCATTGCTTAGAAA+TGG 0.463232 3_4:+60128997 None:intergenic
CAAGCTTTAGAAGATGAGTA+TGG 0.466616 3_4:-60130186 Msa0510870:intron
TGTGTACAAGACAAAGTATC+AGG 0.470745 3_4:-60129693 Msa0510870:intron
CATACAGATTCTCCTTATCC+TGG 0.474985 3_4:-60130569 Msa0510870:CDS
ACAATAGATGGAAAGCTTAG+TGG 0.487637 3_4:-60130404 Msa0510870:intron
GAGATTTGGAATGACATTTG+TGG 0.488365 3_4:-60128210 Msa0510870:CDS
AAAAGCATGAGATCCCTTGT+TGG 0.488472 3_4:-60129123 Msa0510870:CDS
AAACAATCTAAGCTACTCAT+TGG 0.490000 3_4:-60129075 Msa0510870:CDS
CCTTGTTCGATAACTTTGAA+TGG 0.491993 3_4:-60128250 Msa0510870:CDS
TTTGAAGGTGCAGCAAATGA+AGG 0.505148 3_4:-60131104 Msa0510870:CDS
TACTCATCTTCTAAAGCTTG+TGG 0.509391 3_4:+60130189 None:intergenic
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3_4:+60131502 None:intergenic
ACTCATCTTCTAAAGCTTGT+GGG 0.518122 3_4:+60130190 None:intergenic
GAGCATCAAGGATATGAACT+TGG 0.519519 3_4:-60130595 Msa0510870:CDS
GATAACTTTGAATGGTGCTC+GGG 0.522492 3_4:-60128242 Msa0510870:CDS
TGGTAGAACACCAAGTATAT+GGG 0.523979 3_4:-60131081 Msa0510870:CDS
CATGTGCAGGAAAACCAAAA+TGG 0.524640 3_4:-60129522 Msa0510870:intron
TCTTTCAGCGGCTTTCTGGT+CGG 0.525701 3_4:+60129443 None:intergenic
TTAATTGCAGTTGAGCGAAA+CGG 0.526539 3_4:-60128843 Msa0510870:intron
AGGACCATACGTAATATCCT+TGG 0.529150 3_4:+60128270 None:intergenic
CTTCGGCATGAGCTAGAAGT+TGG 0.529575 3_4:+60129723 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.530752 3_4:+60131356 None:intergenic
GTAGTTGTGATATGAATCAA+TGG 0.532477 3_4:+60130881 None:intergenic
ATTTGGAATCTGAGAGTGGC+AGG 0.533648 3_4:+60129466 None:intergenic
CAATATTCTAGACCAGGATA+AGG 0.535004 3_4:+60130557 None:intergenic
AGCAGGATCTTCCTCATACC+AGG 0.542249 3_4:-60131367 Msa0510870:intron
GAGCGAAACGGGAAACCTAT+CGG 0.542747 3_4:-60128831 Msa0510870:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3_4:+60128976 None:intergenic
ACTTTCACCCATAAATATCC+AGG 0.543624 3_4:-60131056 Msa0510870:intron
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3_4:+60129109 None:intergenic
ACGAGAAACTTTCTGCATTG+TGG 0.561392 3_4:-60128163 Msa0510870:CDS
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3_4:+60129110 None:intergenic
GCAAATGGACGAATGGCACC+AGG 0.570578 3_4:-60129821 Msa0510870:CDS
ATCGGTCCAAGAATCGCTCA+TGG 0.576413 3_4:-60128456 Msa0510870:CDS
AATGAAGCAACATCAAGAAG+TGG 0.577727 3_4:+60131426 None:intergenic
GTGAAAGTATCCCATATACT+TGG 0.583793 3_4:+60131071 None:intergenic
GTACAGTGATCCTACACTAT+CGG 0.588636 3_4:-60128474 Msa0510870:CDS
TGGCTATGCAAATGGACGAA+TGG 0.589653 3_4:-60129828 Msa0510870:CDS
GCTTAGAAATGGTGCATCTG+AGG 0.591574 3_4:+60129008 None:intergenic
TGGTTGAATCCAAATTGCAC+CGG 0.596108 3_4:-60129785 Msa0510870:CDS
AAAAGATCACGAATTCCTCT+CGG 0.598066 3_4:+60128686 None:intergenic
ACGTCCAAGGATATTACGTA+TGG 0.609802 3_4:-60128274 Msa0510870:CDS
AGTGGTGGCATAAATCAAGA+AGG 0.614322 3_4:-60130386 Msa0510870:CDS
CTCGATCGCAGAATCACCAC+CGG 0.616082 3_4:+60129766 None:intergenic
CAGGTACCAGTTAGCTACCA+AGG 0.618729 3_4:+60129485 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 3_4:+60130551 None:intergenic
CCATTCAAAGTTATCGAACA+AGG 0.619339 3_4:+60128250 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3_4:-60129865 Msa0510870:CDS
AGGCAAGGTGCAAACGTCCA+AGG 0.624303 3_4:-60128287 Msa0510870:CDS
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3_4:-60128701 Msa0510870:CDS
GGAAGATGTTAGGAGCATCA+AGG 0.632838 3_4:-60130607 Msa0510870:CDS
GAAGTCAACAGCTCTTTCAG+CGG 0.637749 3_4:+60129431 None:intergenic
TGGTGTAATAGGAATAACCT+TGG 0.639957 3_4:-60129502 Msa0510870:CDS
TGACATACCTTAATACCGAT+AGG 0.648130 3_4:+60128816 None:intergenic
TGATTCATATCACAACTACA+AGG 0.653125 3_4:-60130877 Msa0510870:intron
ATAGATGGAAAGCTTAGTGG+TGG 0.655536 3_4:-60130401 Msa0510870:intron
GATTCTTGGACCGATAGTGT+AGG 0.670328 3_4:+60128464 None:intergenic
TTGAATCCAAATTGCACCGG+TGG 0.672179 3_4:-60129782 Msa0510870:CDS
GAAGGTGCAGCAAATGAAGG+TGG 0.681013 3_4:-60131101 Msa0510870:CDS
TCGGATTTGGAATCTGAGAG+TGG 0.682668 3_4:+60129462 None:intergenic
AACCAACTAGAACAACGACC+TGG 0.698527 3_4:+60129803 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCTTTCTATTTTAATTA+TGG - chr3_4:60128870-60128889 Msa0510870:intron 10.0%
!! ATATTGTTCATATATATTAT+AGG - chr3_4:60128979-60128998 Msa0510870:CDS 10.0%
!!! ATAAAATTGTCAATAATTTT+AGG - chr3_4:60129358-60129377 Msa0510870:intron 10.0%
!!! TTTCTTTATATTTCTATTTA+AGG - chr3_4:60130028-60130047 Msa0510870:intron 10.0%
!!! TTTATTTATGATTAGTTTGA+AGG - chr3_4:60128488-60128507 Msa0510870:intron 15.0%
!!! GTAAATTTTATATATATACC+TGG + chr3_4:60128572-60128591 None:intergenic 15.0%
!! CTTAAATGTCTATTATAAAT+AGG + chr3_4:60129522-60129541 None:intergenic 15.0%
!! TTCTATTTAAGGATATTAAA+TGG - chr3_4:60130039-60130058 Msa0510870:intron 15.0%
!! AATAAATTAAAAAGAGTGAT+GGG + chr3_4:60130228-60130247 None:intergenic 15.0%
!! AAATAAATTAAAAAGAGTGA+TGG + chr3_4:60130229-60130248 None:intergenic 15.0%
!!! TACATATTTTGATTTAAAGA+AGG - chr3_4:60130261-60130280 Msa0510870:intron 15.0%
!! TGTTACAAAAGATAAAAATA+TGG - chr3_4:60130299-60130318 Msa0510870:intron 15.0%
!!! TAAAAATATGGATTAACATT+AGG - chr3_4:60130311-60130330 Msa0510870:intron 15.0%
!!! AAAAATATGGATTAACATTA+GGG - chr3_4:60130312-60130331 Msa0510870:intron 15.0%
!! ACTAAATATGATATATAGTT+AGG + chr3_4:60131009-60131028 None:intergenic 15.0%
!!! CTCATTTTAAATCATCAAAT+TGG + chr3_4:60128278-60128297 None:intergenic 20.0%
!! ATATATACCTGGATATTTAT+GGG + chr3_4:60128561-60128580 None:intergenic 20.0%
!! TATATATACCTGGATATTTA+TGG + chr3_4:60128562-60128581 None:intergenic 20.0%
!!! GTAATTTTGATATTGAGTTT+TGG - chr3_4:60128938-60128957 Msa0510870:intron 20.0%
!! ATATATTATAGGAAGATGTT+AGG - chr3_4:60128990-60129009 Msa0510870:CDS 20.0%
!! GTAATTTATCAAAACTTACT+TGG + chr3_4:60129076-60129095 None:intergenic 20.0%
!! AATTATTTACCTACAATAGA+TGG - chr3_4:60129191-60129210 Msa0510870:intron 20.0%
!! ATCATCAACAACAAAATATA+GGG + chr3_4:60129335-60129354 None:intergenic 20.0%
!!! AATTTTAGGTATAAAACCAT+TGG - chr3_4:60129372-60129391 Msa0510870:intron 20.0%
!!! AAAACATTAAGCTATTGTTT+TGG + chr3_4:60129479-60129498 None:intergenic 20.0%
!! GATGTATTTGGTTAAAAAAT+TGG + chr3_4:60129566-60129585 None:intergenic 20.0%
!! TGAACAAAAATTGATGTATT+TGG + chr3_4:60129578-60129597 None:intergenic 20.0%
!! CCTATTTATAAGAGAAATTT+AGG + chr3_4:60129601-60129620 None:intergenic 20.0%
!! CCTAAATTTCTCTTATAAAT+AGG - chr3_4:60129598-60129617 Msa0510870:intron 20.0%
!! TTAAGGATATTAAATGGTAA+TGG - chr3_4:60130045-60130064 Msa0510870:intron 20.0%
!! TAAGGTTTATAAACATTTCA+AGG - chr3_4:60130355-60130374 Msa0510870:CDS 20.0%
!!! GTCATATATTTTTTGTGATA+TGG - chr3_4:60130377-60130396 Msa0510870:CDS 20.0%
!!! TCAACTTTTGATTCAATATT+TGG + chr3_4:60130420-60130439 None:intergenic 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG - chr3_4:60130550-60130569 Msa0510870:intron 20.0%
! TTCCCTAAAGGATTTATATT+TGG - chr3_4:60128217-60128236 Msa0510870:CDS 25.0%
! CTCCAAATATAAATCCTTTA+GGG + chr3_4:60128222-60128241 None:intergenic 25.0%
! AATTGGAGTAATTAATTACC+TGG + chr3_4:60128261-60128280 None:intergenic 25.0%
! CAATTTCATCAATGAGTTAT+TGG - chr3_4:60129259-60129278 Msa0510870:intron 25.0%
! GATCATCAACAACAAAATAT+AGG + chr3_4:60129336-60129355 None:intergenic 25.0%
!! TTTTCATAGAAAATACTCGT+CGG - chr3_4:60129495-60129514 Msa0510870:CDS 25.0%
! AAGTCAAAAGTTTATGTATC+TGG - chr3_4:60129539-60129558 Msa0510870:intron 25.0%
! ATTTCTCTTATAAATAGGAC+CGG - chr3_4:60129603-60129622 Msa0510870:intron 25.0%
!! GATATATATTTTACTTCCTC+CGG + chr3_4:60129625-60129644 None:intergenic 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG + chr3_4:60129672-60129691 None:intergenic 25.0%
! AGTACATGATTTATCGATAA+CGG - chr3_4:60130005-60130024 Msa0510870:intron 25.0%
!! TTATTCCTATTACACCATTT+TGG + chr3_4:60130102-60130121 None:intergenic 25.0%
!!! TTGATATCATTGGTTTTCTA+AGG - chr3_4:60130337-60130356 Msa0510870:intron 25.0%
! GATATGGTTAAATGAATTTG+TGG - chr3_4:60130393-60130412 Msa0510870:CDS 25.0%
!! ATCAAAAGTTGATTGATTAC+AGG - chr3_4:60130428-60130447 Msa0510870:intron 25.0%
!!! GATTGTTTTGCATTGAATTT+TGG + chr3_4:60130520-60130539 None:intergenic 25.0%
!! TTGCATATCTTTTCTATTTG+TGG - chr3_4:60130741-60130760 Msa0510870:intron 25.0%
!! TGATCTTTTATTATACACCA+AGG - chr3_4:60130935-60130954 Msa0510870:intron 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG + chr3_4:60130975-60130994 None:intergenic 25.0%
! TTGATTTACATCACTGAAAA+TGG - chr3_4:60130975-60130994 Msa0510870:intron 25.0%
! GATAATATAGATGACGATAA+TGG + chr3_4:60131196-60131215 None:intergenic 25.0%
! TAGAACATCGTTAAAATGAT+TGG + chr3_4:60131277-60131296 None:intergenic 25.0%
GCTCCAAATATAAATCCTTT+AGG + chr3_4:60128223-60128242 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG - chr3_4:60128223-60128242 Msa0510870:CDS 30.0%
GTAATTAATTACCTGGTATG+AGG + chr3_4:60128254-60128273 None:intergenic 30.0%
GTAGTTGTGATATGAATCAA+TGG + chr3_4:60128729-60128748 None:intergenic 30.0%
TGATTCATATCACAACTACA+AGG - chr3_4:60128730-60128749 Msa0510870:intron 30.0%
! ATCAATGAGTTATTGGCTAA+TGG - chr3_4:60129266-60129285 Msa0510870:intron 30.0%
!! ATTGGTGACTCTTTTTCATT+GGG - chr3_4:60129390-60129409 Msa0510870:intron 30.0%
!! GAACTTTGCTTTAAGGAATT+TGG - chr3_4:60129702-60129721 Msa0510870:CDS 30.0%
! TTGGTGATAGAGTGAAATAT+TGG - chr3_4:60129721-60129740 Msa0510870:CDS 30.0%
TGGTGATAGAGTGAAATATT+GGG - chr3_4:60129722-60129741 Msa0510870:CDS 30.0%
CTAAAATATGTTACATGTGC+AGG - chr3_4:60130072-60130091 Msa0510870:intron 30.0%
GAAAACCAAAATGGTGTAAT+AGG - chr3_4:60130094-60130113 Msa0510870:intron 30.0%
!! CATTAGGGTTTTGATATCAT+TGG - chr3_4:60130327-60130346 Msa0510870:intron 30.0%
GTTGATTGATTACAGGTTTA+TGG - chr3_4:60130435-60130454 Msa0510870:intron 30.0%
AAACAATCTAAGCTACTCAT+TGG - chr3_4:60130532-60130551 Msa0510870:intron 30.0%
! GAAATTAGTTTCTTACATGC+TGG + chr3_4:60130664-60130683 None:intergenic 30.0%
TAGTAAGAGAACTCATAGAA+TGG + chr3_4:60130689-60130708 None:intergenic 30.0%
TTTCAGTGATGTAAATCAAC+GGG + chr3_4:60130974-60130993 None:intergenic 30.0%
GACGTGCATAATTTACTTAT+AGG - chr3_4:60131101-60131120 Msa0510870:CDS 30.0%
TAGTCTCTTACATCTCTAAA+AGG - chr3_4:60131237-60131256 Msa0510870:intron 30.0%
CTGTCATACATAAAGGAAAA+TGG + chr3_4:60131302-60131321 None:intergenic 30.0%
! CATTTTCCTTTATGTATGAC+AGG - chr3_4:60131300-60131319 Msa0510870:intron 30.0%
! ACATTTGTGGATTACAAGAA+TGG - chr3_4:60131410-60131429 Msa0510870:CDS 30.0%
AATGAAGCAACATCAAGAAG+TGG + chr3_4:60128184-60128203 None:intergenic 35.0%
AGTAGAAACAGTTTCCCTAA+AGG - chr3_4:60128205-60128224 Msa0510870:CDS 35.0%
TGGTAGAACACCAAGTATAT+GGG - chr3_4:60128526-60128545 Msa0510870:intron 35.0%
!! GTGAAAGTATCCCATATACT+TGG + chr3_4:60128539-60128558 None:intergenic 35.0%
ACTTTCACCCATAAATATCC+AGG - chr3_4:60128551-60128570 Msa0510870:intron 35.0%
CAATATTCTAGACCAGGATA+AGG + chr3_4:60129053-60129072 None:intergenic 35.0%
CTAAGCTTTCCATCTATTGT+AGG + chr3_4:60129203-60129222 None:intergenic 35.0%
ACAATAGATGGAAAGCTTAG+TGG - chr3_4:60129203-60129222 Msa0510870:intron 35.0%
CAATGAAAAAGAGTCACCAA+TGG + chr3_4:60129391-60129410 None:intergenic 35.0%
!! CATTGGTGACTCTTTTTCAT+TGG - chr3_4:60129389-60129408 Msa0510870:intron 35.0%
!! ACTCATCTTCTAAAGCTTGT+GGG + chr3_4:60129420-60129439 None:intergenic 35.0%
!! TACTCATCTTCTAAAGCTTG+TGG + chr3_4:60129421-60129440 None:intergenic 35.0%
!! CAAGCTTTAGAAGATGAGTA+TGG - chr3_4:60129421-60129440 Msa0510870:intron 35.0%
CTATGCAGAACTTTGCTTTA+AGG - chr3_4:60129695-60129714 Msa0510870:CDS 35.0%
AGTCAAAATGGCTATGCAAA+TGG - chr3_4:60129771-60129790 Msa0510870:CDS 35.0%
CTTTGTCTTGTACACATTGA+CGG + chr3_4:60129910-60129929 None:intergenic 35.0%
! TGTGTACAAGACAAAGTATC+AGG - chr3_4:60129914-60129933 Msa0510870:intron 35.0%
TGGTGTAATAGGAATAACCT+TGG - chr3_4:60130105-60130124 Msa0510870:intron 35.0%
TTTATGGATCCACTTACAAC+AGG - chr3_4:60130451-60130470 Msa0510870:intron 35.0%
AAAGAATCTGTCAAGTAGCT+AGG + chr3_4:60130634-60130653 None:intergenic 35.0%
TAGCTACTTGACAGATTCTT+TGG - chr3_4:60130633-60130652 Msa0510870:intron 35.0%
TTAATTGCAGTTGAGCGAAA+CGG - chr3_4:60130764-60130783 Msa0510870:intron 35.0%
TGACATACCTTAATACCGAT+AGG + chr3_4:60130794-60130813 None:intergenic 35.0%
TTATGCAGATTGCTTCTGAT+TGG - chr3_4:60130886-60130905 Msa0510870:CDS 35.0%
AAAAGATCACGAATTCCTCT+CGG + chr3_4:60130924-60130943 None:intergenic 35.0%
CCATTCAAAGTTATCGAACA+AGG + chr3_4:60131360-60131379 None:intergenic 35.0%
CCTTGTTCGATAACTTTGAA+TGG - chr3_4:60131357-60131376 Msa0510870:intron 35.0%
! GAGATTTGGAATGACATTTG+TGG - chr3_4:60131397-60131416 Msa0510870:CDS 35.0%
CAAAAGCAATTAGGCAGAGA+AGG + chr3_4:60128108-60128127 None:intergenic 40.0%
GCACAAGTGCAAAAGCAATT+AGG + chr3_4:60128117-60128136 None:intergenic 40.0%
! TTTGAAGGTGCAGCAAATGA+AGG - chr3_4:60128503-60128522 Msa0510870:intron 40.0%
GTGGTAGAACACCAAGTATA+TGG - chr3_4:60128525-60128544 Msa0510870:intron 40.0%
GAGCATCAAGGATATGAACT+TGG - chr3_4:60129012-60129031 Msa0510870:CDS 40.0%
CATACAGATTCTCCTTATCC+TGG - chr3_4:60129038-60129057 Msa0510870:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG + chr3_4:60129059-60129078 None:intergenic 40.0%
ATAGATGGAAAGCTTAGTGG+TGG - chr3_4:60129206-60129225 Msa0510870:intron 40.0%
AGTGGTGGCATAAATCAAGA+AGG - chr3_4:60129221-60129240 Msa0510870:intron 40.0%
!! GCTTTAGAAGATGAGTATGG+TGG - chr3_4:60129424-60129443 Msa0510870:intron 40.0%
TGGAAACTCACACTATGAGA+GGG + chr3_4:60129459-60129478 None:intergenic 40.0%
TTGGAAACTCACACTATGAG+AGG + chr3_4:60129460-60129479 None:intergenic 40.0%
TCTCTTATAAATAGGACCGG+AGG - chr3_4:60129606-60129625 Msa0510870:intron 40.0%
AGCAAAGTTCTGCATAGTCT+TGG + chr3_4:60129692-60129711 None:intergenic 40.0%
! GGGTTACTTTGAATGAACCA+TGG - chr3_4:60129742-60129761 Msa0510870:CDS 40.0%
!!! CCATTTTGACTGTAACTCCA+TGG + chr3_4:60129762-60129781 None:intergenic 40.0%
CCATGGAGTTACAGTCAAAA+TGG - chr3_4:60129759-60129778 Msa0510870:CDS 40.0%
TGGTTGAATCCAAATTGCAC+CGG - chr3_4:60129822-60129841 Msa0510870:CDS 40.0%
! TGGTAGTGCGTGACAATATA+GGG + chr3_4:60129867-60129886 None:intergenic 40.0%
!! TTGGTAGTGCGTGACAATAT+AGG + chr3_4:60129868-60129887 None:intergenic 40.0%
CATGTGCAGGAAAACCAAAA+TGG - chr3_4:60130085-60130104 Msa0510870:intron 40.0%
! GAATAACCTTGGTAGCTAAC+TGG - chr3_4:60130116-60130135 Msa0510870:intron 40.0%
!! AGAGCTGTTGACTTCATGTA+TGG - chr3_4:60130184-60130203 Msa0510870:intron 40.0%
!! CTGTTGACTTCATGTATGGA+TGG - chr3_4:60130188-60130207 Msa0510870:CDS 40.0%
GGATAATCTCCTGTTGTAAG+TGG + chr3_4:60130463-60130482 None:intergenic 40.0%
! ACAAGGGATCTCATGCTTTT+AGG + chr3_4:60130484-60130503 None:intergenic 40.0%
! AAAAGCATGAGATCCCTTGT+TGG - chr3_4:60130484-60130503 Msa0510870:intron 40.0%
TGGTAATCTTGCTCCAACAA+GGG + chr3_4:60130500-60130519 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG + chr3_4:60130501-60130520 None:intergenic 40.0%
GGTCTAGCATTGCTTAGAAA+TGG + chr3_4:60130613-60130632 None:intergenic 40.0%
TAATTGCAGTTGAGCGAAAC+GGG - chr3_4:60130765-60130784 Msa0510870:intron 40.0%
CAGCAAGATCGTTAGAAGAA+AGG + chr3_4:60130823-60130842 None:intergenic 40.0%
CTTTCTTCTAACGATCTTGC+TGG - chr3_4:60130821-60130840 Msa0510870:intron 40.0%
TGGTTGTATGTTTATCCGAG+AGG - chr3_4:60130906-60130925 Msa0510870:CDS 40.0%
GTACAGTGATCCTACACTAT+CGG - chr3_4:60131133-60131152 Msa0510870:intron 40.0%
TCCTTTATGTATGACAGGCA+AGG - chr3_4:60131305-60131324 Msa0510870:intron 40.0%
ACCTTGCCTGTCATACATAA+AGG + chr3_4:60131309-60131328 None:intergenic 40.0%
ACGTCCAAGGATATTACGTA+TGG - chr3_4:60131333-60131352 Msa0510870:intron 40.0%
AGGACCATACGTAATATCCT+TGG + chr3_4:60131340-60131359 None:intergenic 40.0%
CGATAACTTTGAATGGTGCT+CGG - chr3_4:60131364-60131383 Msa0510870:intron 40.0%
GATAACTTTGAATGGTGCTC+GGG - chr3_4:60131365-60131384 Msa0510870:intron 40.0%
TCGGGTTATTCTGTGAGATT+TGG - chr3_4:60131383-60131402 Msa0510870:CDS 40.0%
ACGAGAAACTTTCTGCATTG+TGG - chr3_4:60131444-60131463 Msa0510870:CDS 40.0%
!! GGAAGATGTTAGGAGCATCA+AGG - chr3_4:60129000-60129019 Msa0510870:CDS 45.0%
TGGCTATGCAAATGGACGAA+TGG - chr3_4:60129779-60129798 Msa0510870:CDS 45.0%
AACCAACTAGAACAACGACC+TGG + chr3_4:60129807-60129826 None:intergenic 45.0%
TTGAATCCAAATTGCACCGG+TGG - chr3_4:60129825-60129844 Msa0510870:CDS 45.0%
CTTGTACACATTGACGGCTT+CGG + chr3_4:60129904-60129923 None:intergenic 45.0%
! ATTTGGAATCTGAGAGTGGC+AGG + chr3_4:60130144-60130163 None:intergenic 45.0%
! TCGGATTTGGAATCTGAGAG+TGG + chr3_4:60130148-60130167 None:intergenic 45.0%
GAAGTCAACAGCTCTTTCAG+CGG + chr3_4:60130179-60130198 None:intergenic 45.0%
GCTTAGAAATGGTGCATCTG+AGG + chr3_4:60130602-60130621 None:intergenic 45.0%
CGGGAAACCTATCGGTATTA+AGG - chr3_4:60130784-60130803 Msa0510870:intron 45.0%
! CGGGTTGTTGTACTTTTCCT+TGG + chr3_4:60130955-60130974 None:intergenic 45.0%
GATTCTTGGACCGATAGTGT+AGG + chr3_4:60131146-60131165 None:intergenic 45.0%
AAGTGTCCATGAGCGATTCT+TGG + chr3_4:60131160-60131179 None:intergenic 45.0%
!!! ATTATTTTTATTTTTTTGAA+AGG + chr3_4:60129121-60129140 None:intergenic 5.0%
AGCAGGATCTTCCTCATACC+AGG - chr3_4:60128240-60128259 Msa0510870:CDS 50.0%
! GAAGGTGCAGCAAATGAAGG+TGG - chr3_4:60128506-60128525 Msa0510870:intron 50.0%
CACCAGGTCGTTGTTCTAGT+TGG - chr3_4:60129802-60129821 Msa0510870:CDS 50.0%
GAATCACCACCGGTGCAATT+TGG + chr3_4:60129834-60129853 None:intergenic 50.0%
CTTCGGCATGAGCTAGAAGT+TGG + chr3_4:60129887-60129906 None:intergenic 50.0%
CAGGTACCAGTTAGCTACCA+AGG + chr3_4:60130125-60130144 None:intergenic 50.0%
! TCTTTCAGCGGCTTTCTGGT+CGG + chr3_4:60130167-60130186 None:intergenic 50.0%
GAGCGAAACGGGAAACCTAT+CGG - chr3_4:60130776-60130795 Msa0510870:intron 50.0%
ATCGGTCCAAGAATCGCTCA+TGG - chr3_4:60131151-60131170 Msa0510870:intron 50.0%
GCAAATGGACGAATGGCACC+AGG - chr3_4:60129786-60129805 Msa0510870:CDS 55.0%
CTCGATCGCAGAATCACCAC+CGG + chr3_4:60129844-60129863 None:intergenic 55.0%
! AGCGGCTTTCTGGTCGGATT+TGG + chr3_4:60130161-60130180 None:intergenic 55.0%
CAGCTCTTTCAGCGGCTTTC+TGG + chr3_4:60130171-60130190 None:intergenic 55.0%
AGGCAAGGTGCAAACGTCCA+AGG - chr3_4:60131320-60131339 Msa0510870:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 60128091 60131538 60128091 ID=Msa0510870;Name=Msa0510870
chr3_4 mRNA 60128091 60131538 60128091 ID=Msa0510870-mRNA-1;Parent=Msa0510870;Name=Msa0510870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|0.91|0.92|13|0|511
chr3_4 exon 60131368 60131538 60131368 ID=Msa0510870-mRNA-1:exon:14305;Parent=Msa0510870-mRNA-1
chr3_4 exon 60131057 60131126 60131057 ID=Msa0510870-mRNA-1:exon:14304;Parent=Msa0510870-mRNA-1
chr3_4 exon 60130878 60130936 60130878 ID=Msa0510870-mRNA-1:exon:14303;Parent=Msa0510870-mRNA-1
chr3_4 exon 60130553 60130628 60130553 ID=Msa0510870-mRNA-1:exon:14302;Parent=Msa0510870-mRNA-1
chr3_4 exon 60130342 60130419 60130342 ID=Msa0510870-mRNA-1:exon:14301;Parent=Msa0510870-mRNA-1
chr3_4 exon 60130187 60130249 60130187 ID=Msa0510870-mRNA-1:exon:14300;Parent=Msa0510870-mRNA-1
chr3_4 exon 60129694 60129926 60129694 ID=Msa0510870-mRNA-1:exon:14299;Parent=Msa0510870-mRNA-1
chr3_4 exon 60129429 60129535 60129429 ID=Msa0510870-mRNA-1:exon:14298;Parent=Msa0510870-mRNA-1
chr3_4 exon 60128962 60129179 60128962 ID=Msa0510870-mRNA-1:exon:14297;Parent=Msa0510870-mRNA-1
chr3_4 exon 60128824 60128855 60128824 ID=Msa0510870-mRNA-1:exon:14296;Parent=Msa0510870-mRNA-1
chr3_4 exon 60128633 60128735 60128633 ID=Msa0510870-mRNA-1:exon:14295;Parent=Msa0510870-mRNA-1
chr3_4 exon 60128398 60128506 60128398 ID=Msa0510870-mRNA-1:exon:14294;Parent=Msa0510870-mRNA-1
chr3_4 exon 60128091 60128307 60128091 ID=Msa0510870-mRNA-1:exon:14293;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60131368 60131538 60131368 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60131057 60131126 60131057 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60130878 60130936 60130878 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60130553 60130628 60130553 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60130342 60130419 60130342 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60130187 60130249 60130187 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60129694 60129926 60129694 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60129429 60129535 60129429 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60128962 60129179 60128962 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60128824 60128855 60128824 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60128633 60128735 60128633 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60128398 60128506 60128398 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
chr3_4 CDS 60128091 60128307 60128091 ID=Msa0510870-mRNA-1:cds;Parent=Msa0510870-mRNA-1
Gene Sequence

>Msa0510870

ATGGCATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACTATTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCTAAAGGATTTATATTTGGAGCAGGATCTTCCTCATACCAGTTTGAAGGTGCAGCAAATGAAGGTGGTAGAACACCAAGTATATGGGATACTTTCACCCATAAATATCCAGAAAAGATCAAAGATAGAAGCAATGCAGATGAAGCCATTGATTCATATCACAACTACAAGGAAGATGTTAGGAGCATCAAGGATATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAATGGAAAGCTTAGTGGTGGCATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAATGAGTTATTGGCTAATGGTATAAAACCATTGGTGACTCTTTTTCATTGGGATCTCCCACAAGCTTTAGAAGATGAGTATGAACTTTGCTTTAAGGAATTTGGTGATAGAGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTACAGTCAAAATGGCTATGCAAATGGACGAATGGCACCAGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGCGATCGAGCCCTATATTGTCACGCACTACCAACTTCTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGAAAACCAAAATGGTGTAATAGGAATAACCTTGGTAGCTAACTGGTACCTGCCACTCTCAGATTCCAAATCCGACCAGAAAGCCGCTGAAAGAGCTGTTGACTTCATGTTTATGGATCCACTTACAACAGGAGATTATCCTAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAATCTAAGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACATATGCCTCAGATGCACCATTTCTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCAGCATTTGAGCGAAACGGGAAACCTATCGGTATTAAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTTTATTATACACCAAGGAAAAGTACAACAACCCGTTGATTTACATCACTGAAAATGGTATTAACGAGTACAGTGATCCTACACTATCGGTCCAAGAATCGCTCATGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGCAAGGTGCAAACGTCCAAGGATATTACGTATGGTCCTTGTTCGATAACTTTGAATGGTGCTCGGGTTATTCTGTGAGATTTGGAATGACATTTGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCATTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATTACTTTTATTCATTAA
Protein sequence

>Msa0510870

MAFNYLLCLIAFALVLSKTNVNCIETIEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEGGRTPSIWDTFTHKYPEKIKDRSNADEAIDSYHNYKEDVRSIKDMNLDSYRFSLSWSRILPNGKLSGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQALEDEYELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQENQNGVIGITLVANWYLPLSDSKSDQKAAERAVDFMFMDPLTTGDYPKSMRSLVGARLPKFNAKQSKLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYVWSLFDNFEWCSGYSVRFGMTFVDYKNGLKRYEKLSALWFKNFLRKETKLMFLVRKVITFIH*