AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166030 MtrunA17_Chr1g0180551 92.213 488 24 1 1 474 70 557 0.0 893
Msa0166030 MtrunA17_Chr1g0180541 73.116 491 108 3 1 474 1 484 0.0 712
Msa0166030 MtrunA17_Chr4g0028411 54.054 481 188 7 13 474 12 478 3.89e-173 499
Msa0166030 MtrunA17_Chr2g0327341 50.418 478 207 8 13 474 12 475 2.76e-154 451
Msa0166030 MtrunA17_Chr1g0157401 39.331 478 266 7 13 474 27 496 2.15e-103 321
Msa0166030 MtrunA17_Chr8g0353341 40.329 486 256 12 13 474 24 499 5.02e-101 314
Msa0166030 MtrunA17_Chr5g0409771 35.700 493 272 9 6 474 20 491 1.61e-92 292
Msa0166030 MtrunA17_Chr4g0039791 37.678 491 271 8 4 474 22 497 1.12e-90 288
Msa0166030 MtrunA17_Chr5g0409791 37.097 496 259 11 4 465 19 495 2.84e-88 282
Msa0166030 MtrunA17_Chr1g0197391 38.994 477 249 13 21 474 45 502 3.26e-87 279
Msa0166030 MtrunA17_Chr4g0072561 38.066 486 258 13 13 474 18 484 1.87e-84 271
Msa0166030 MtrunA17_Chr3g0116271 37.447 470 239 14 32 474 53 494 5.78e-82 265
Msa0166030 MtrunA17_Chr5g0395431 35.614 497 268 15 7 474 50 523 8.57e-82 265
Msa0166030 MtrunA17_Chr1g0186071 38.771 472 239 12 25 474 49 492 2.27e-79 258
Msa0166030 MtrunA17_Chr3g0116251 35.881 471 242 14 32 474 54 492 1.30e-76 251
Msa0166030 MtrunA17_Chr4g0000461 35.185 486 279 11 9 474 8 477 9.44e-75 246
Msa0166030 MtrunA17_Chr3g0102411 31.315 479 280 12 22 474 22 477 7.83e-73 241
Msa0166030 MtrunA17_Chr1g0157431 35.174 344 216 5 13 355 27 364 9.14e-55 192
Msa0166030 MtrunA17_Chr2g0334131 42.922 219 107 4 272 474 3 219 4.81e-44 157
Msa0166030 MtrunA17_Chr2g0292471 26.556 482 276 16 44 472 21 477 1.83e-31 127
Msa0166030 MtrunA17_Chr6g0471921 26.638 473 303 13 56 507 32 481 3.11e-29 120
Msa0166030 MtrunA17_Chr3g0109731 24.056 503 311 16 21 474 3 483 8.90e-26 111
Msa0166030 MtrunA17_Chr5g0396331 25.152 493 302 19 25 476 11 477 1.37e-21 98.2
Msa0166030 MtrunA17_Chr7g0252691 22.343 461 296 14 55 466 205 652 2.20e-21 98.2
Msa0166030 MtrunA17_Chr5g0433241 24.746 493 316 14 23 476 6 482 3.29e-21 97.1
Msa0166030 MtrunA17_Chr8g0370701 28.289 456 254 19 68 476 94 523 1.07e-20 95.5
Msa0166030 MtrunA17_Chr1g0205711 27.609 297 157 12 195 445 259 543 1.26e-20 95.5
Msa0166030 MtrunA17_Chr2g0301671 22.424 495 331 13 19 474 11 491 2.46e-20 94.4
Msa0166030 MtrunA17_Chr5g0433231 25.714 490 303 16 28 476 14 483 8.15e-19 89.7
Msa0166030 MtrunA17_Chr2g0334121 28.837 215 142 5 1 212 1 207 4.19e-18 83.2
Msa0166030 MtrunA17_Chr4g0028451 51.807 83 19 2 410 471 10 92 5.40e-18 79.7
Msa0166030 MtrunA17_Chr5g0396311 23.171 492 315 13 25 476 11 479 1.09e-16 82.8
Msa0166030 MtrunA17_Chr5g0406681 22.958 453 292 16 68 480 80 515 3.22e-16 81.6
Msa0166030 MtrunA17_Chr5g0396711 22.907 454 266 18 57 445 80 514 9.08e-16 80.5
Msa0166030 MtrunA17_Chr4g0068151 22.200 491 337 15 19 474 11 491 1.68e-15 79.3
Msa0166030 MtrunA17_Chr6g0471311 25.255 491 306 16 28 476 14 485 2.51e-15 79.0
Msa0166030 MtrunA17_Chr4g0033141 25.694 288 181 11 195 455 675 956 2.54e-15 79.7
Msa0166030 MtrunA17_Chr5g0396691 22.788 452 269 17 57 445 80 514 5.49e-15 77.8
Msa0166030 MtrunA17_Chr8g0377991 33.083 133 79 3 305 436 445 568 4.67e-14 75.1
Msa0166030 MtrunA17_Chr3g0121951 35.870 92 55 1 344 435 473 560 8.67e-12 67.8
Msa0166030 MtrunA17_Chr4g0028441 64.583 48 15 2 229 276 5 50 1.05e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166030 AT4G05160.1 52.720 478 201 8 13 474 12 480 9.18e-170 491
Msa0166030 AT1G20510.1 38.703 478 265 8 12 474 16 480 1.97e-102 318
Msa0166030 AT1G20510.2 38.641 471 261 8 12 467 16 473 1.75e-100 311
Msa0166030 AT1G20480.1 39.344 488 270 10 3 474 24 501 3.59e-98 308
Msa0166030 AT1G20500.1 39.918 486 248 11 12 474 22 486 5.72e-97 304
Msa0166030 AT4G19010.1 37.854 494 262 12 6 474 25 498 2.52e-94 298
Msa0166030 AT5G38120.3 36.492 496 268 11 3 474 14 486 1.03e-91 290
Msa0166030 AT5G38120.1 36.492 496 268 11 3 474 14 486 2.23e-91 290
Msa0166030 AT1G20510.3 37.931 435 256 7 12 445 16 437 1.89e-90 285
Msa0166030 AT5G38120.4 36.196 489 265 11 3 467 14 479 7.41e-89 281
Msa0166030 AT5G38120.2 36.196 489 265 11 3 467 14 479 7.41e-89 281
Msa0166030 AT1G65060.1 35.306 507 280 12 13 491 35 521 1.21e-84 273
Msa0166030 AT5G63380.1 36.238 505 259 18 6 474 17 494 9.64e-84 270
Msa0166030 AT3G21240.1 35.366 492 282 11 3 474 15 490 2.04e-82 266
Msa0166030 AT3G21240.2 35.537 484 276 11 3 466 15 482 3.88e-82 264
Msa0166030 AT3G21240.3 35.537 484 276 11 3 466 15 482 3.88e-82 264
Msa0166030 AT1G65060.2 35.666 443 255 10 13 445 35 457 3.47e-76 248
Msa0166030 AT1G20490.2 37.530 421 243 10 12 427 22 427 3.87e-75 244
Msa0166030 AT1G20490.1 37.530 421 243 10 12 427 22 427 3.87e-75 244
Msa0166030 AT3G21230.3 36.511 493 263 13 13 473 29 503 4.46e-74 244
Msa0166030 AT3G21230.2 36.626 486 258 13 13 466 29 496 8.65e-74 242
Msa0166030 AT3G21230.1 36.511 493 263 13 13 473 29 503 9.26e-74 244
Msa0166030 AT1G51680.3 34.879 496 278 11 7 474 19 497 2.76e-72 239
Msa0166030 AT1G51680.1 34.879 496 278 11 7 474 19 497 4.98e-72 239
Msa0166030 AT1G51680.2 35.041 488 272 11 7 466 19 489 5.45e-72 237
Msa0166030 AT1G62940.1 31.723 476 285 11 21 474 19 476 5.90e-68 228
Msa0166030 AT3G21230.4 34.856 416 235 12 13 410 29 426 1.33e-49 177
Msa0166030 AT1G30520.2 27.009 448 269 14 68 474 45 475 5.32e-34 135
Msa0166030 AT1G30520.1 27.009 448 269 14 68 474 45 475 5.32e-34 135
Msa0166030 AT3G48990.1 29.424 469 282 15 69 509 45 492 9.56e-31 125
Msa0166030 AT1G30520.3 26.847 406 253 13 68 446 45 433 2.00e-30 124
Msa0166030 AT1G30520.4 26.847 406 253 13 68 446 45 433 2.00e-30 124
Msa0166030 AT3G16170.1 25.097 514 294 19 35 489 72 553 2.03e-26 113
Msa0166030 AT1G65890.1 23.596 534 326 19 26 503 10 517 3.48e-25 109
Msa0166030 AT1G76290.1 25.610 492 294 17 25 474 11 472 3.62e-24 106
Msa0166030 AT1G65880.1 24.547 497 307 18 26 476 10 484 1.28e-23 105
Msa0166030 AT1G77240.1 26.854 499 300 16 22 476 5 482 3.73e-23 103
Msa0166030 AT1G21540.1 26.667 435 276 13 74 476 61 484 6.05e-23 102
Msa0166030 AT1G21530.1 24.943 441 271 14 74 476 61 479 1.74e-22 101
Msa0166030 AT1G21530.2 24.379 443 273 13 74 476 61 481 2.71e-22 100
Msa0166030 AT1G66120.1 23.992 496 311 14 26 476 10 484 2.97e-21 97.8
Msa0166030 AT1G20560.1 24.194 496 309 15 25 476 13 485 5.20e-21 97.1
Msa0166030 AT5G36880.4 23.077 455 300 13 55 466 147 594 5.98e-21 97.1
Msa0166030 AT1G64400.1 23.494 498 293 20 16 445 38 515 8.71e-21 96.7
Msa0166030 AT5G36880.2 23.077 455 300 13 55 466 197 644 1.05e-20 96.3
Msa0166030 AT5G36880.6 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0166030 AT5G36880.3 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0166030 AT5G36880.5 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0166030 AT5G36880.1 23.077 455 300 13 55 466 147 594 1.13e-20 96.3
Msa0166030 AT5G27600.1 23.941 472 259 18 44 445 105 546 1.44e-19 92.8
Msa0166030 AT4G23850.1 23.810 462 274 19 47 445 69 515 2.87e-18 88.6
Msa0166030 AT2G47240.4 28.197 305 152 13 195 445 162 453 4.49e-18 87.8
Msa0166030 AT2G47240.1 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0166030 AT2G47240.2 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0166030 AT2G47240.3 28.197 305 152 13 195 445 221 512 5.62e-18 87.8
Msa0166030 AT3G05970.1 27.027 296 160 12 195 445 262 546 2.56e-16 82.4
Msa0166030 AT3G23790.1 32.680 153 92 4 286 436 423 566 5.83e-16 81.6
Msa0166030 AT1G20560.2 25.140 358 206 14 156 476 75 407 1.44e-15 79.7
Msa0166030 AT2G17650.1 25.437 515 301 20 17 476 53 539 3.16e-15 79.0
Msa0166030 AT3G16910.1 21.130 478 337 13 29 472 21 492 3.81e-15 78.6
Msa0166030 AT4G11030.1 22.198 455 268 16 57 445 81 515 1.90e-14 76.6
Msa0166030 AT1G75960.1 23.984 492 307 17 28 476 14 481 2.15e-14 76.3
Msa0166030 AT4G14070.1 36.134 119 66 3 319 436 473 582 1.55e-12 70.5

Find 167 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCTGAATGATTTCAATTT+TGG 0.042770 1_4:+47000492 None:intergenic
CGAATCAATTAGGGGAAATT+TGG 0.173843 1_4:-46999293 Msa0166030:CDS
ATGTTTGCAAACTAACAATT+TGG 0.209952 1_4:+46999331 None:intergenic
TGGCGGCGGTGGAGAAGTTT+AGG 0.233984 1_4:-47000669 Msa0166030:CDS
CCCCTTCCACCGAATCAATT+AGG 0.246857 1_4:-46999303 Msa0166030:CDS
TGAGAGCTCTGGCGAGTTTC+CGG 0.259522 1_4:-47000959 Msa0166030:CDS
GGAGCCTTCCTTTCGAATTC+AGG 0.261357 1_4:-46999387 Msa0166030:CDS
GCCGGTGGTGCTGCTCCTCT+TGG 0.301131 1_4:-47000550 Msa0166030:CDS
TGATTTAACTTATATAATAC+TGG 0.302438 1_4:-47001067 Msa0166030:CDS
GGTTAGGGATTCACCGGTTT+GGG 0.304144 1_4:+47001356 None:intergenic
CGTCCAACCCTGATCATTAA+TGG 0.305183 1_4:+46999043 None:intergenic
CCCTTCCACCGAATCAATTA+GGG 0.305642 1_4:-46999302 Msa0166030:CDS
GCCCAAAATTGAAATCATTC+AGG 0.312101 1_4:-47000494 Msa0166030:intron
CTTTCGAATTCAGGTTCAAC+TGG 0.317770 1_4:-46999378 Msa0166030:CDS
GAAAGGAAGGCTCCTTCCTT+TGG 0.318775 1_4:+46999396 None:intergenic
ATCTTTCCCGTGGGTGACTT+TGG 0.320822 1_4:+46996790 None:intergenic
CATCCTGAAATTTCTGATGC+TGG 0.321468 1_4:-46998388 Msa0166030:CDS
ACGAGTTTGTTTCTAATGTT+TGG 0.328406 1_4:-47001011 Msa0166030:CDS
GGAAGGTTGATGGGTGGTCT+TGG 0.333086 1_4:+47001459 None:intergenic
TTTCGAGTTGGCAGAAGGTT+AGG 0.336094 1_4:+47001340 None:intergenic
GATACCGTCACAACAAGTTT+AGG 0.338287 1_4:+47001123 None:intergenic
CATGGCGGGTAGATTTGATT+TGG 0.339507 1_4:-47000701 Msa0166030:CDS
GGCGGCGGTGGAGAAGTTTA+GGG 0.357431 1_4:-47000668 Msa0166030:CDS
GCGGTGATTCTGTATTCTTC+AGG 0.365718 1_4:-47000916 Msa0166030:CDS
CGTCACAACAAGTTTAGGTT+TGG 0.369581 1_4:+47001128 None:intergenic
ACCTAACTCCATACGTTTAC+CGG 0.370893 1_4:-47001244 Msa0166030:CDS
GATCAGGGTTGGACGCTTAC+CGG 0.372482 1_4:-46999035 Msa0166030:CDS
CTGATAAGTGGGAAGGTTGA+TGG 0.381985 1_4:+47001449 None:intergenic
GAAGAATGTGTTCCTTTGTT+TGG 0.382457 1_4:-47000797 Msa0166030:CDS
ATCCTGAAATTTCTGATGCT+GGG 0.385883 1_4:-46998387 Msa0166030:CDS
ATGACCATTGTTACAAGTTA+CGG 0.388411 1_4:+46996630 None:intergenic
TGTTTGCAAACTAACAATTT+GGG 0.388733 1_4:+46999332 None:intergenic
AACTGGAACCTCACCAGCTT+TGG 0.389995 1_4:+46998266 None:intergenic
CACCGGTTTGGGCGTCGGTA+AGG 0.391259 1_4:+47001367 None:intergenic
ATCTTACCTTGCATCATAAC+AGG 0.391547 1_4:+46999261 None:intergenic
ACCTCACCAGCTTTGGCATC+AGG 0.397512 1_4:+46998273 None:intergenic
TGGACGCTTACCGGCGATCT+TGG 0.400441 1_4:-46999026 Msa0166030:CDS
CAAATTTCCCCTAATTGATT+CGG 0.406286 1_4:+46999294 None:intergenic
GTTATAACAAATTAGTGCCT+TGG 0.407796 1_4:-46996722 Msa0166030:exon
GGCGATGGTGTCAGCGGCGG+AGG 0.411671 1_4:+47001389 None:intergenic
GGTGTCAGCGGCGGAGGAAG+TGG 0.414516 1_4:+47001395 None:intergenic
AAAACAGACCATTAATGATC+AGG 0.419353 1_4:-46999051 Msa0166030:CDS
TAATACTGGACGATGAATCT+TGG 0.426049 1_4:-47001053 Msa0166030:CDS
TAACAATGGTCATCAAGATA+TGG 0.427193 1_4:-46996620 Msa0166030:three_prime_UTR
AATAGCAGGAGTGGCGGATC+AGG 0.430936 1_4:-47000836 Msa0166030:CDS
TAGAGAAAGGTTCTGATAAG+TGG 0.433288 1_4:+47001437 None:intergenic
GGGTAATTGTGGCAGGGGTA+TGG 0.436534 1_4:-46999456 Msa0166030:intron
CCGGTGGTGCTGCTCCTCTT+GGG 0.441068 1_4:-47000549 Msa0166030:CDS
CCCAAGAGGAGCAGCACCAC+CGG 0.446490 1_4:+47000549 None:intergenic
ACAATTTGGGATTCTACACT+TGG 0.446736 1_4:+46999345 None:intergenic
AGGCACCACGGGGAAAAGTA+AGG 0.446955 1_4:-47000896 Msa0166030:CDS
ACCGGTTTGGGCGTCGGTAA+GGG 0.447969 1_4:+47001368 None:intergenic
AGGTTAGGGATTCACCGGTT+TGG 0.448089 1_4:+47001355 None:intergenic
GGAGAAGACTTTGGCGGCGG+TGG 0.450963 1_4:-47000680 Msa0166030:CDS
TTCGAGTTGGCAGAAGGTTA+GGG 0.452011 1_4:+47001341 None:intergenic
CCCTAATTGATTCGGTGGAA+GGG 0.455832 1_4:+46999302 None:intergenic
CTGTATTCTTCAGGCACCAC+GGG 0.457302 1_4:-47000907 Msa0166030:CDS
CTCTGCAGATGTCAAAGTTA+TGG 0.458733 1_4:-46996695 Msa0166030:three_prime_UTR
TCCCGCTCATTTCTCAGTCT+CGG 0.460011 1_4:-47001300 Msa0166030:CDS
ACCCCAGCATCAGAAATTTC+AGG 0.460523 1_4:+46998385 None:intergenic
GCCCTTACCGACGCCCAAAC+CGG 0.463330 1_4:-47001369 Msa0166030:CDS
AGGGAACACGGTGGTGTCCA+TGG 0.465521 1_4:-47000719 Msa0166030:CDS
AGAGAAAGGTTCTGATAAGT+GGG 0.471019 1_4:+47001438 None:intergenic
CCCCTAATTGATTCGGTGGA+AGG 0.472230 1_4:+46999301 None:intergenic
GTTTGTTGCTCCGCCGGTGA+TGG 0.473291 1_4:-47000635 Msa0166030:CDS
AACACGGTGGTGTCCATGGC+GGG 0.473934 1_4:-47000715 Msa0166030:CDS
TTGGGCGTCGGTAAGGGCGA+TGG 0.476304 1_4:+47001374 None:intergenic
AACCTTCTGCCAACTCGAAA+CGG 0.477160 1_4:-47001337 Msa0166030:CDS
GACTGAGAAATGAGCGGGAG+AGG 0.478041 1_4:+47001304 None:intergenic
ATTTGATTTGGAGAAGACTT+TGG 0.479820 1_4:-47000689 Msa0166030:CDS
CCTAATTGATTCGGTGGAAG+GGG 0.482338 1_4:+46999303 None:intergenic
TCCGCCGGTGATGGTGGAGC+TGG 0.483210 1_4:-47000626 Msa0166030:CDS
TCCAGGTTGCACCATACAAA+AGG 0.483621 1_4:-46996843 Msa0166030:intron
TGATAAGTGGGAAGGTTGAT+GGG 0.483728 1_4:+47001450 None:intergenic
AGCAAGTCTTCAAGTTCAGC+AGG 0.491846 1_4:+46998418 None:intergenic
TTCCTCGCTGTTGCCGCCAT+AGG 0.493585 1_4:-47001216 Msa0166030:CDS
ACCGGTAAACGTATGGAGTT+AGG 0.495154 1_4:+47001243 None:intergenic
ATGTCGGATTGCAAAACAAC+CGG 0.496839 1_4:+47000940 None:intergenic
ACATTTGTTTGTTGCTCCGC+CGG 0.502423 1_4:-47000641 Msa0166030:CDS
TTCATAGCGACGGCAATAGC+AGG 0.503335 1_4:-47000850 Msa0166030:CDS
GGATTCACCGGTTTGGGCGT+CGG 0.506800 1_4:+47001362 None:intergenic
GAGAAATGAGCGGGAGAGGT+AGG 0.508726 1_4:+47001308 None:intergenic
GTCAAAGTTATGGTCTCTGC+AGG 0.513064 1_4:-46996685 Msa0166030:three_prime_UTR
AGAGGAATGAAGTTAGAGAA+AGG 0.520769 1_4:+47001424 None:intergenic
CGGAGGAAGTGGATTGGAAG+AGG 0.525231 1_4:+47001406 None:intergenic
GGTGGTAGCAATAGCACCTA+TGG 0.528120 1_4:+47001200 None:intergenic
GCAGAAGGTTAGGGATTCAC+CGG 0.528186 1_4:+47001350 None:intergenic
TCGCTGAAGCAGCTCGCCGG+TGG 0.528672 1_4:-47000565 Msa0166030:CDS
AGGTCTCCTGATGCCAAAGC+TGG 0.530769 1_4:-46998279 Msa0166030:intron
CTTTCTTAAAATCTTTCCCG+TGG 0.531023 1_4:+46996780 None:intergenic
TGTTGCTCCGCCGGTGATGG+TGG 0.535849 1_4:-47000632 Msa0166030:CDS
GACGGTGTACAAAGGACTAC+AGG 0.539868 1_4:+47001179 None:intergenic
TCGTCGCTGAAGCAGCTCGC+CGG 0.540204 1_4:-47000568 Msa0166030:CDS
GATGCATCACGTGATGGGAT+TGG 0.541122 1_4:-47000770 Msa0166030:CDS
TGATTTGGAGAAGACTTTGG+CGG 0.542218 1_4:-47000686 Msa0166030:CDS
GCTGGTCAAGCGGCGTGAGG+TGG 0.543332 1_4:-47000608 Msa0166030:CDS
GGTGCCGATGCATCACGTGA+TGG 0.544878 1_4:-47000776 Msa0166030:CDS
TGGTGCTACGAAGATCTTGT+CGG 0.546238 1_4:-47000991 Msa0166030:CDS
AATCCCATCACGTGATGCAT+CGG 0.546519 1_4:+47000772 None:intergenic
GTGCCGATGCATCACGTGAT+GGG 0.546854 1_4:-47000775 Msa0166030:CDS
TCCGAGACTGAGAAATGAGC+GGG 0.546926 1_4:+47001299 None:intergenic
GAAACAGACCGGTAAACGTA+TGG 0.547736 1_4:+47001236 None:intergenic
GACATCTGCAGAGCCTTCCA+AGG 0.548064 1_4:+46996705 None:intergenic
CAGCGGCGGAGGAAGTGGAT+TGG 0.552751 1_4:+47001400 None:intergenic
ATTTCCCCTAATTGATTCGG+TGG 0.554045 1_4:+46999297 None:intergenic
GGAGAGTTGTGTGAGAGCTC+TGG 0.554408 1_4:-47000970 Msa0166030:CDS
ATCCGTTTCGAGTTGGCAGA+AGG 0.554945 1_4:+47001335 None:intergenic
CAGTTGAACCTGAATTCGAA+AGG 0.558487 1_4:+46999379 None:intergenic
TAACAAATTAGTGCCTTGGA+AGG 0.559737 1_4:-46996718 Msa0166030:exon
TTGACCAGCTCCACCATCAC+CGG 0.560201 1_4:+47000622 None:intergenic
AAGGGCGATGGTGTCAGCGG+CGG 0.563973 1_4:+47001386 None:intergenic
AAACAGACCATTAATGATCA+GGG 0.568415 1_4:-46999050 Msa0166030:CDS
CAAATCAAATCTACCCGCCA+TGG 0.574751 1_4:+47000702 None:intergenic
TCCTGAAATTTCTGATGCTG+GGG 0.576358 1_4:-46998386 Msa0166030:CDS
CAAACCTAAACTTGTTGTGA+CGG 0.577024 1_4:-47001127 Msa0166030:CDS
ATCAAAATATCCAAGATCGC+CGG 0.578056 1_4:+46999016 None:intergenic
TATTCCGTAACTTGTAACAA+TGG 0.582581 1_4:-46996634 Msa0166030:three_prime_UTR
CGAGGACCTGTTATGATGCA+AGG 0.582930 1_4:-46999267 Msa0166030:intron
GTTGATGGGTGGTCTTGGTG+AGG 0.585069 1_4:+47001464 None:intergenic
AAAGGTTCTGATAAGTGGGA+AGG 0.585265 1_4:+47001442 None:intergenic
GGAGCTGGTCAAGCGGCGTG+AGG 0.585465 1_4:-47000611 Msa0166030:CDS
AGGAGACATCCGTTTCGAGT+TGG 0.586270 1_4:+47001328 None:intergenic
TTGCACCATACAAAAGGTTG+CGG 0.587147 1_4:-46996837 Msa0166030:CDS
AGGGAGTGATGTTGACTCAC+GGG 0.587908 1_4:-47000876 Msa0166030:CDS
TGAACCTGAATTCGAAAGGA+AGG 0.588263 1_4:+46999383 None:intergenic
TTTGGAGAAGACTTTGGCGG+CGG 0.592605 1_4:-47000683 Msa0166030:CDS
AGCGACGGCAATAGCAGGAG+TGG 0.599340 1_4:-47000845 Msa0166030:CDS
TCTGTATTCTTCAGGCACCA+CGG 0.602344 1_4:-47000908 Msa0166030:CDS
GCAGCTGAGGAGAGGGAACA+CGG 0.604601 1_4:-47000731 Msa0166030:CDS
TCAAGATATGGTGTTACCAG+TGG 0.605112 1_4:-46996608 Msa0166030:three_prime_UTR
AGACCATTAATGATCAGGGT+TGG 0.605610 1_4:-46999046 Msa0166030:CDS
ACCAGCTCCACCATCACCGG+CGG 0.605994 1_4:+47000625 None:intergenic
TGCATCAAATCTTTCCCAAG+AGG 0.606362 1_4:+47000535 None:intergenic
TATACACGCAGCTGAGGAGA+GGG 0.608385 1_4:-47000738 Msa0166030:CDS
GGCACCACGGGGAAAAGTAA+GGG 0.608988 1_4:-47000895 Msa0166030:CDS
TTGCTTCCTGAGTTCAGAGA+CGG 0.611491 1_4:+47001161 None:intergenic
TTTCTTAAAATCTTTCCCGT+GGG 0.617584 1_4:+46996781 None:intergenic
AAGGGAGTGATGTTGACTCA+CGG 0.619938 1_4:-47000877 Msa0166030:CDS
TGATATTATACACGCAGCTG+AGG 0.621129 1_4:-47000744 Msa0166030:CDS
TTATACACGCAGCTGAGGAG+AGG 0.622735 1_4:-47000739 Msa0166030:CDS
GATGCATCGGCACCAAACAA+AGG 0.622737 1_4:+47000785 None:intergenic
AAGATTCCAAAGTCACCCAC+GGG 0.626293 1_4:-46996796 Msa0166030:CDS
AAGCGGCGTGAGGTGGTGAG+CGG 0.631498 1_4:-47000601 Msa0166030:CDS
CTCAGTCTCGGAATCAAACG+AGG 0.634490 1_4:-47001288 Msa0166030:CDS
TGATGGTGGAGCTGGTCAAG+CGG 0.634922 1_4:-47000618 Msa0166030:CDS
GAAGATTCCAAAGTCACCCA+CGG 0.635112 1_4:-46996797 Msa0166030:CDS
AGTTCAGAGACGGTGTACAA+AGG 0.638197 1_4:+47001171 None:intergenic
TGTACACCGTCTCTGAACTC+AGG 0.639183 1_4:-47001167 Msa0166030:CDS
GCATCACGTGATGGGATTGG+CGG 0.641987 1_4:-47000767 Msa0166030:CDS
GACGGCAATAGCAGGAGTGG+CGG 0.649833 1_4:-47000842 Msa0166030:CDS
GGTAAGGGCGATGGTGTCAG+CGG 0.651773 1_4:+47001383 None:intergenic
GAACACGGTGGTGTCCATGG+CGG 0.655795 1_4:-47000716 Msa0166030:CDS
TCACGGGAACTTCATAGCGA+CGG 0.662847 1_4:-47000860 Msa0166030:CDS
CACCTATGGCGGCAACAGCG+AGG 0.669323 1_4:+47001214 None:intergenic
GGTAGCAATAGCACCTATGG+CGG 0.670387 1_4:+47001203 None:intergenic
TTCCGAGACTGAGAAATGAG+CGG 0.681783 1_4:+47001298 None:intergenic
GCAACAGCGAGGAAACAGAC+CGG 0.684023 1_4:+47001225 None:intergenic
TTAGGGGAAATTTGGCTACG+AGG 0.686700 1_4:-46999285 Msa0166030:CDS
TCTCTGCAGGAACAGTGAGG+AGG 0.692371 1_4:-46996672 Msa0166030:three_prime_UTR
TGTATTCTTCAGGCACCACG+GGG 0.712806 1_4:-47000906 Msa0166030:CDS
TATGGCATGACTGAAGCATG+CGG 0.715652 1_4:-46999438 Msa0166030:CDS
ATACAGAATCACCGCCATGT+CGG 0.718108 1_4:+47000924 None:intergenic
TAAGTGGGAAGGTTGATGGG+TGG 0.720375 1_4:+47001453 None:intergenic
CCTTCCACCGAATCAATTAG+GGG 0.722238 1_4:-46999301 Msa0166030:CDS
GGTGTACAAAGGACTACAGG+TGG 0.723283 1_4:+47001182 None:intergenic
TGGTCTCTGCAGGAACAGTG+AGG 0.724884 1_4:-46996675 Msa0166030:three_prime_UTR
GCTGAGGAGAGGGAACACGG+TGG 0.809300 1_4:-47000728 Msa0166030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTAAAAATAAAAAAATA+TGG + chr1_4:46999459-46999478 None:intergenic 0.0%
!! ATAAATAAGATTAAAATCTA+AGG - chr1_4:46999247-46999266 Msa0166030:intron 10.0%
!! TAAATAAGATTAAAATCTAA+GGG - chr1_4:46999248-46999267 Msa0166030:intron 10.0%
!!! TTGTATAAAATAATTACTTT+TGG - chr1_4:46999866-46999885 Msa0166030:intron 10.0%
!! TTACAAATAAAATTAACATT+AGG - chr1_4:47000311-47000330 Msa0166030:intron 10.0%
!!! ATATTTTAAATTTGACTATA+TGG - chr1_4:47000335-47000354 Msa0166030:intron 10.0%
!!! GTTTAATATTTCATTTTTTT+AGG + chr1_4:47000377-47000396 None:intergenic 10.0%
!!! TAGAAATGAAATTTTAATAT+CGG - chr1_4:47000858-47000877 Msa0166030:CDS 10.0%
!!! TGATTTAACTTATATAATAC+TGG - chr1_4:46996951-46996970 Msa0166030:intron 15.0%
!!! TTTTATCATTCCATAAATTT+AGG - chr1_4:46998310-46998329 Msa0166030:intron 15.0%
!! ATTTCATATCTTAATGATAT+TGG - chr1_4:46998485-46998504 Msa0166030:intron 15.0%
!!! TTATATCACATATTTTTTTC+AGG - chr1_4:46998920-46998939 Msa0166030:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1_4:47000082-47000101 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1_4:47000081-47000100 Msa0166030:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG - chr1_4:47000105-47000124 Msa0166030:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr1_4:47000208-47000227 Msa0166030:intron 15.0%
!!! AAGGTTTTATTTAATATATG+AGG - chr1_4:47000456-47000475 Msa0166030:intron 15.0%
!! AATATCATTCACATTAAATT+AGG + chr1_4:47000524-47000543 None:intergenic 15.0%
!! AATTTAATGTGAATGATATT+CGG - chr1_4:47000524-47000543 Msa0166030:CDS 15.0%
!!! TTTAATTTTGTTTATGTTGA+TGG - chr1_4:47000822-47000841 Msa0166030:CDS 15.0%
!! GAATTATACATACTTAATCA+CGG - chr1_4:46997596-46997615 Msa0166030:intron 20.0%
!! CAAAACATAAAATTTACATG+AGG - chr1_4:46997725-46997744 Msa0166030:intron 20.0%
!!! ATCAGAGTGTTAATTTTTTT+TGG + chr1_4:46997898-46997917 None:intergenic 20.0%
!! TACGCAAATTATTAAAAACT+TGG + chr1_4:46998002-46998021 None:intergenic 20.0%
!! AATTTAGTGTCCTAAATTTA+TGG + chr1_4:46998323-46998342 None:intergenic 20.0%
!!! ATTATATTGGAAGCATAATA+TGG - chr1_4:46998381-46998400 Msa0166030:CDS 20.0%
!!! GTTTTTCCTTTATAAGAAAA+CGG - chr1_4:46999092-46999111 Msa0166030:intron 20.0%
!!! TTATTGGCTAACATTAATTT+CGG + chr1_4:46999163-46999182 None:intergenic 20.0%
!!! TACAAACTTTAACTTTAATG+AGG - chr1_4:46999494-46999513 Msa0166030:intron 20.0%
!!! TCATACACATTTTCATTATT+AGG - chr1_4:46999572-46999591 Msa0166030:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_4:47000091-47000110 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1_4:47000168-47000187 Msa0166030:intron 20.0%
!! TTAGATTGATCTTGAATTAA+AGG - chr1_4:47000764-47000783 Msa0166030:CDS 20.0%
!! GAACTCTTCAAAAATTTTGA+AGG - chr1_4:46996919-46996938 Msa0166030:intron 25.0%
!!! CTTCAAAAATTTTGAAGGAT+TGG - chr1_4:46996924-46996943 Msa0166030:intron 25.0%
!! ACCTGAATGATTTCAATTTT+GGG + chr1_4:46997528-46997547 None:intergenic 25.0%
!! TACCTGAATGATTTCAATTT+TGG + chr1_4:46997529-46997548 None:intergenic 25.0%
! TAAAATTTACATGAGGTATG+AGG - chr1_4:46997732-46997751 Msa0166030:intron 25.0%
! AAAATTTACATGAGGTATGA+GGG - chr1_4:46997733-46997752 Msa0166030:intron 25.0%
! ATAATACTTGACTAACATTG+TGG - chr1_4:46997756-46997775 Msa0166030:intron 25.0%
! TCTTGCATAAGGAAAAAATT+TGG - chr1_4:46998104-46998123 Msa0166030:intron 25.0%
!!! ATTGACTGACTTTTATACAA+CGG - chr1_4:46998183-46998202 Msa0166030:intron 25.0%
! TCAATTTAATCCATTTGTCT+GGG - chr1_4:46998245-46998264 Msa0166030:intron 25.0%
! CTAAATTGACAAATCATGAA+TGG - chr1_4:46998287-46998306 Msa0166030:intron 25.0%
! TCTGAATGAGTGTATTATAT+TGG - chr1_4:46998368-46998387 Msa0166030:intron 25.0%
! TCACAAACAATTCATTACAT+GGG + chr1_4:46998533-46998552 None:intergenic 25.0%
! ATCACAAACAATTCATTACA+TGG + chr1_4:46998534-46998553 None:intergenic 25.0%
! GTAATGAATTGTTTGTGATA+TGG - chr1_4:46998535-46998554 Msa0166030:intron 25.0%
! AATTGTTTGTGATATGGTAT+GGG - chr1_4:46998541-46998560 Msa0166030:intron 25.0%
!!! TGTTTCTTTTGAAAATCCAA+AGG - chr1_4:46998606-46998625 Msa0166030:intron 25.0%
! TGTTTGCAAACTAACAATTT+GGG + chr1_4:46998689-46998708 None:intergenic 25.0%
! ATGTTTGCAAACTAACAATT+TGG + chr1_4:46998690-46998709 None:intergenic 25.0%
! TAAGTTTCATGCAAACTAAT+AGG + chr1_4:46998879-46998898 None:intergenic 25.0%
!!! CTTGGATATTTTGATGAAAA+AGG - chr1_4:46999010-46999029 Msa0166030:CDS 25.0%
!! TATTGGCTAACATTAATTTC+GGG + chr1_4:46999162-46999181 None:intergenic 25.0%
! AAAATGCTAGATATCAAGAA+TGG + chr1_4:46999315-46999334 None:intergenic 25.0%
!! ATATCTAGCATTTTCCAAAA+CGG - chr1_4:46999321-46999340 Msa0166030:CDS 25.0%
!!! TCTCTATATGATTTTGAGTT+AGG - chr1_4:46999346-46999365 Msa0166030:CDS 25.0%
!! CAAAACAAAGTCATATTTTG+TGG - chr1_4:46999402-46999421 Msa0166030:CDS 25.0%
!! TACACATTTTCATTATTAGG+TGG - chr1_4:46999575-46999594 Msa0166030:intron 25.0%
! CTAGATGAAAATATGACTTA+CGG + chr1_4:46999663-46999682 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG - chr1_4:47000048-47000067 Msa0166030:intron 25.0%
!! TTGTTGAAACCATATTGATT+TGG - chr1_4:47000930-47000949 Msa0166030:CDS 25.0%
!!! CATATTGATTTGGTTTAGTT+CGG - chr1_4:47000940-47000959 Msa0166030:CDS 25.0%
!!! TACGGTTTGATTTAGTTTTA+AGG + chr1_4:47001038-47001057 None:intergenic 25.0%
! TATGAGATTAAGAATGTTTG+TGG + chr1_4:47001061-47001080 None:intergenic 25.0%
! ACAATATTGTTTGATCATGA+GGG + chr1_4:47001089-47001108 None:intergenic 25.0%
!! ACGAGTTTGTTTCTAATGTT+TGG - chr1_4:46997007-46997026 Msa0166030:intron 30.0%
!! ATTTGATTTGGAGAAGACTT+TGG - chr1_4:46997329-46997348 Msa0166030:intron 30.0%
ATGAGAGAAACTGAGTTAAA+TGG - chr1_4:46997657-46997676 Msa0166030:intron 30.0%
TTCCAAATTATACCATTGGT+GGG + chr1_4:46997811-46997830 None:intergenic 30.0%
TTTGAACTTGAGACTTCAAT+CGG - chr1_4:46997930-46997949 Msa0166030:intron 30.0%
CGTATTGAATATGTTCGAAA+TGG - chr1_4:46998018-46998037 Msa0166030:intron 30.0%
TGAATATGTTCGAAATGGAT+TGG - chr1_4:46998023-46998042 Msa0166030:intron 30.0%
GCATAAGGAAAAAATTTGGT+TGG - chr1_4:46998108-46998127 Msa0166030:intron 30.0%
TCAATGACTAATCTCTATTG+AGG + chr1_4:46998168-46998187 None:intergenic 30.0%
CTCAATTTAATCCATTTGTC+TGG - chr1_4:46998244-46998263 Msa0166030:intron 30.0%
GACACTAAATTATCCAACTT+AGG - chr1_4:46998332-46998351 Msa0166030:intron 30.0%
! TCACTATTTTCATCCTAAGT+TGG + chr1_4:46998348-46998367 None:intergenic 30.0%
GAATTGTTTGTGATATGGTA+TGG - chr1_4:46998540-46998559 Msa0166030:intron 30.0%
ATTGTTTGTGATATGGTATG+GGG - chr1_4:46998542-46998561 Msa0166030:intron 30.0%
!! TCTTTTGAAAATCCAAAGGA+AGG - chr1_4:46998610-46998629 Msa0166030:intron 30.0%
CAAATTTCCCCTAATTGATT+CGG + chr1_4:46998727-46998746 None:intergenic 30.0%
AAAACAGACCATTAATGATC+AGG - chr1_4:46998967-46998986 Msa0166030:intron 30.0%
AAACAGACCATTAATGATCA+GGG - chr1_4:46998968-46998987 Msa0166030:intron 30.0%
! AAAGAGTTGATCAAGTGTAA+CGG - chr1_4:46999058-46999077 Msa0166030:CDS 30.0%
TGATGAATTCAAGAATGACA+TGG + chr1_4:46999285-46999304 None:intergenic 30.0%
! ATCATATAGAGAAACCGTTT+TGG + chr1_4:46999338-46999357 None:intergenic 30.0%
TTAGGTTCAAATACTTTCTC+TGG - chr1_4:46999364-46999383 Msa0166030:CDS 30.0%
ATAGTGTAAACATGCATAAG+AGG + chr1_4:46999704-46999723 None:intergenic 30.0%
ACTATTCTATTTACCATCTC+AGG - chr1_4:46999719-46999738 Msa0166030:intron 30.0%
CAAGAAATTTGTAGCAAAAG+AGG - chr1_4:46999822-46999841 Msa0166030:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + chr1_4:46999999-47000018 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG - chr1_4:47000000-47000019 Msa0166030:intron 30.0%
AGTGTGAGATAGAAATCTTA+AGG - chr1_4:47000437-47000456 Msa0166030:intron 30.0%
ATGCTTTCGACTTAATAAGT+CGG + chr1_4:47000671-47000690 None:intergenic 30.0%
! TATGTTGATGGATACATTGT+TGG - chr1_4:47000834-47000853 Msa0166030:CDS 30.0%
TCAATATGGTTTCAACAATG+CGG + chr1_4:47000928-47000947 None:intergenic 30.0%
CGAACTAAACCAAATCAATA+TGG + chr1_4:47000942-47000961 None:intergenic 30.0%
GATTAAGAATGTTTGTGGTA+CGG + chr1_4:47001056-47001075 None:intergenic 30.0%
GACAATATTGTTTGATCATG+AGG + chr1_4:47001090-47001109 None:intergenic 30.0%
!! TAGCAAATGAAAGTGTTTGA+AGG - chr1_4:47001111-47001130 Msa0166030:CDS 30.0%
!! AAATGAAAGTGTTTGAAGGT+TGG - chr1_4:47001115-47001134 Msa0166030:CDS 30.0%
TTTCTTAAAATCTTTCCCGT+GGG + chr1_4:47001240-47001259 None:intergenic 30.0%
GTTATAACAAATTAGTGCCT+TGG - chr1_4:47001296-47001315 Msa0166030:CDS 30.0%
! TATTCCGTAACTTGTAACAA+TGG - chr1_4:47001384-47001403 Msa0166030:CDS 30.0%
ATGACCATTGTTACAAGTTA+CGG + chr1_4:47001391-47001410 None:intergenic 30.0%
TAACAATGGTCATCAAGATA+TGG - chr1_4:47001398-47001417 Msa0166030:CDS 30.0%
! AGAGAAAGGTTCTGATAAGT+GGG + chr1_4:46996583-46996602 None:intergenic 35.0%
! TAGAGAAAGGTTCTGATAAG+TGG + chr1_4:46996584-46996603 None:intergenic 35.0%
AGAGGAATGAAGTTAGAGAA+AGG + chr1_4:46996597-46996616 None:intergenic 35.0%
!! CAAACCTAAACTTGTTGTGA+CGG - chr1_4:46996891-46996910 Msa0166030:intron 35.0%
TAATACTGGACGATGAATCT+TGG - chr1_4:46996965-46996984 Msa0166030:intron 35.0%
GAAGAATGTGTTCCTTTGTT+TGG - chr1_4:46997221-46997240 Msa0166030:intron 35.0%
GCCCAAAATTGAAATCATTC+AGG - chr1_4:46997524-46997543 Msa0166030:intron 35.0%
TACTTGACTAACATTGTGGT+TGG - chr1_4:46997760-46997779 Msa0166030:intron 35.0%
TCCAAATTATACCATTGGTG+GGG + chr1_4:46997810-46997829 None:intergenic 35.0%
GTTCCAAATTATACCATTGG+TGG + chr1_4:46997812-46997831 None:intergenic 35.0%
!! ATGGATTGGTCCAAATTGTA+AGG - chr1_4:46998037-46998056 Msa0166030:intron 35.0%
!! TGGATTGGTCCAAATTGTAA+GGG - chr1_4:46998038-46998057 Msa0166030:intron 35.0%
ATCTCTATTGAGGAACTTGT+GGG + chr1_4:46998158-46998177 None:intergenic 35.0%
AATCTCTATTGAGGAACTTG+TGG + chr1_4:46998159-46998178 None:intergenic 35.0%
! ACAATTTGGGATTCTACACT+TGG + chr1_4:46998676-46998695 None:intergenic 35.0%
CGAATCAATTAGGGGAAATT+TGG - chr1_4:46998725-46998744 Msa0166030:intron 35.0%
ATCTTACCTTGCATCATAAC+AGG + chr1_4:46998760-46998779 None:intergenic 35.0%
ATCAAAATATCCAAGATCGC+CGG + chr1_4:46999005-46999024 None:intergenic 35.0%
AAAAGGACAACTATTTGTCG+TGG - chr1_4:46999027-46999046 Msa0166030:CDS 35.0%
! AAGAGTTGATCAAGTGTAAC+GGG - chr1_4:46999059-46999078 Msa0166030:CDS 35.0%
! GCTCAACCGTTTTCTTATAA+AGG + chr1_4:46999101-46999120 None:intergenic 35.0%
AAATACTTTCTCTGGTCTCT+CGG - chr1_4:46999372-46999391 Msa0166030:CDS 35.0%
ATCCTGAAATTTCTGATGCT+GGG - chr1_4:46999631-46999650 Msa0166030:intron 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr1_4:47000130-47000149 Msa0166030:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr1_4:47000134-47000153 Msa0166030:intron 35.0%
! AAGCGACACTCATTTTGAAT+CGG - chr1_4:47000234-47000253 Msa0166030:intron 35.0%
GGTTGCTCTTTGATCTAATA+TGG - chr1_4:47000609-47000628 Msa0166030:CDS 35.0%
!! GAAAGCATTCTTGACAATGA+TGG - chr1_4:47000683-47000702 Msa0166030:CDS 35.0%
! TTAGTTCATTTTCTTCCTCC+AGG - chr1_4:47001158-47001177 Msa0166030:CDS 35.0%
CTTTCTTAAAATCTTTCCCG+TGG + chr1_4:47001241-47001260 None:intergenic 35.0%
!! CACGGGAAAGATTTTAAGAA+AGG - chr1_4:47001239-47001258 Msa0166030:CDS 35.0%
TAACAAATTAGTGCCTTGGA+AGG - chr1_4:47001300-47001319 Msa0166030:CDS 35.0%
! AAAAAAACAAAGCACTCCAC+TGG + chr1_4:47001429-47001448 None:intergenic 35.0%
! AGGAATACGTCAACGTTTTG+AGG + chr1_4:46996537-46996556 None:intergenic 40.0%
! TGATAAGTGGGAAGGTTGAT+GGG + chr1_4:46996571-46996590 None:intergenic 40.0%
! AAAGGTTCTGATAAGTGGGA+AGG + chr1_4:46996579-46996598 None:intergenic 40.0%
ACCTAACTCCATACGTTTAC+CGG - chr1_4:46996774-46996793 Msa0166030:CDS 40.0%
! CGTCACAACAAGTTTAGGTT+TGG + chr1_4:46996893-46996912 None:intergenic 40.0%
GATACCGTCACAACAAGTTT+AGG + chr1_4:46996898-46996917 None:intergenic 40.0%
ATGTCGGATTGCAAAACAAC+CGG + chr1_4:46997081-46997100 None:intergenic 40.0%
TGATATTATACACGCAGCTG+AGG - chr1_4:46997274-46997293 Msa0166030:intron 40.0%
! TGATTTGGAGAAGACTTTGG+CGG - chr1_4:46997332-46997351 Msa0166030:intron 40.0%
TGCATCAAATCTTTCCCAAG+AGG + chr1_4:46997486-46997505 None:intergenic 40.0%
!! AACATTGTGGTTGGTGACAT+TGG - chr1_4:46997769-46997788 Msa0166030:intron 40.0%
! TGACATTGGTGACAACACAA+AGG - chr1_4:46997783-46997802 Msa0166030:intron 40.0%
ACCCCACCAATGGTATAATT+TGG - chr1_4:46997806-46997825 Msa0166030:intron 40.0%
CGGGTTCCAAATTATACCAT+TGG + chr1_4:46997815-46997834 None:intergenic 40.0%
!! GGATTGGTCCAAATTGTAAG+GGG - chr1_4:46998039-46998058 Msa0166030:intron 40.0%
CGATTTCTGTCTCTTGCATA+AGG - chr1_4:46998093-46998112 Msa0166030:intron 40.0%
!! GACTGACTTTTATACAACGG+TGG - chr1_4:46998186-46998205 Msa0166030:intron 40.0%
ATCTTAGACTCCCAGACAAA+TGG + chr1_4:46998258-46998277 None:intergenic 40.0%
AGATGCATACTACATCATGC+AGG - chr1_4:46998418-46998437 Msa0166030:CDS 40.0%
GATATGGTATGGGGTAATTG+TGG - chr1_4:46998551-46998570 Msa0166030:intron 40.0%
TGAACCTGAATTCGAAAGGA+AGG + chr1_4:46998638-46998657 None:intergenic 40.0%
CAGTTGAACCTGAATTCGAA+AGG + chr1_4:46998642-46998661 None:intergenic 40.0%
! CTTTCGAATTCAGGTTCAAC+TGG - chr1_4:46998640-46998659 Msa0166030:intron 40.0%
!! ATTTCCCCTAATTGATTCGG+TGG + chr1_4:46998724-46998743 None:intergenic 40.0%
!! ATGGTCTGTTTTGTTGCTTC+TGG + chr1_4:46998959-46998978 None:intergenic 40.0%
AGACCATTAATGATCAGGGT+TGG - chr1_4:46998972-46998991 Msa0166030:intron 40.0%
CATCCTGAAATTTCTGATGC+TGG - chr1_4:46999630-46999649 Msa0166030:intron 40.0%
TCCTGAAATTTCTGATGCTG+GGG - chr1_4:46999632-46999651 Msa0166030:intron 40.0%
!! GGATGGAGTATTTTCAAGAG+AGG + chr1_4:46999978-46999997 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+TGG + chr1_4:46999995-47000014 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr1_4:47000133-47000152 Msa0166030:intron 40.0%
! GACACTCATTTTGAATCGGA+GGG - chr1_4:47000238-47000257 Msa0166030:intron 40.0%
TGTGGTTGCTCTTGATTATG+TGG - chr1_4:47000493-47000512 Msa0166030:intron 40.0%
! GGATTTTCCTCATGACTCAA+AGG - chr1_4:47000545-47000564 Msa0166030:CDS 40.0%
CTCAAAACCTTTGAGTCATG+AGG + chr1_4:47000555-47000574 None:intergenic 40.0%
TGATGTTTCTCTCACTTGTG+TGG - chr1_4:47000588-47000607 Msa0166030:CDS 40.0%
TAATAAGTCGGTCGAATCCT+GGG + chr1_4:47000659-47000678 None:intergenic 40.0%
TTAATAAGTCGGTCGAATCC+TGG + chr1_4:47000660-47000679 None:intergenic 40.0%
ACATGTCTCGTTGATGTGAA+TGG - chr1_4:47000713-47000732 Msa0166030:CDS 40.0%
ATGGTTTCAACAATGCGGTT+TGG + chr1_4:47000923-47000942 None:intergenic 40.0%
TTGCACCATACAAAAGGTTG+CGG - chr1_4:47001181-47001200 Msa0166030:CDS 40.0%
CTCTGCAGATGTCAAAGTTA+TGG - chr1_4:47001323-47001342 Msa0166030:CDS 40.0%
!! TCAAGATATGGTGTTACCAG+TGG - chr1_4:47001410-47001429 Msa0166030:CDS 40.0%
CTGATAAGTGGGAAGGTTGA+TGG + chr1_4:46996572-46996591 None:intergenic 45.0%
!! TTCGAGTTGGCAGAAGGTTA+GGG + chr1_4:46996680-46996699 None:intergenic 45.0%
!! TTTCGAGTTGGCAGAAGGTT+AGG + chr1_4:46996681-46996700 None:intergenic 45.0%
AACCTTCTGCCAACTCGAAA+CGG - chr1_4:46996681-46996700 Msa0166030:three_prime_UTR 45.0%
TTCCGAGACTGAGAAATGAG+CGG + chr1_4:46996723-46996742 None:intergenic 45.0%
ACCGGTAAACGTATGGAGTT+AGG + chr1_4:46996778-46996797 None:intergenic 45.0%
GAAACAGACCGGTAAACGTA+TGG + chr1_4:46996785-46996804 None:intergenic 45.0%
AGTTCAGAGACGGTGTACAA+AGG + chr1_4:46996850-46996869 None:intergenic 45.0%
TTGCTTCCTGAGTTCAGAGA+CGG + chr1_4:46996860-46996879 None:intergenic 45.0%
!! TGGTGCTACGAAGATCTTGT+CGG - chr1_4:46997027-46997046 Msa0166030:intron 45.0%
!! GGTTGTTTTGCAATCCGACA+TGG - chr1_4:46997080-46997099 Msa0166030:intron 45.0%
! TGTTTTGCAATCCGACATGG+CGG - chr1_4:46997083-46997102 Msa0166030:intron 45.0%
ATACAGAATCACCGCCATGT+CGG + chr1_4:46997097-46997116 None:intergenic 45.0%
GCGGTGATTCTGTATTCTTC+AGG - chr1_4:46997102-46997121 Msa0166030:intron 45.0%
TCTGTATTCTTCAGGCACCA+CGG - chr1_4:46997110-46997129 Msa0166030:intron 45.0%
!! AAGGGAGTGATGTTGACTCA+CGG - chr1_4:46997141-46997160 Msa0166030:intron 45.0%
!!! GTGGCGGATCAGGATTTTTA+CGG - chr1_4:46997192-46997211 Msa0166030:intron 45.0%
! GATCAGGATTTTTACGGCGA+GGG - chr1_4:46997198-46997217 Msa0166030:intron 45.0%
! ATCAGGATTTTTACGGCGAG+GGG - chr1_4:46997199-46997218 Msa0166030:intron 45.0%
AATCCCATCACGTGATGCAT+CGG + chr1_4:46997249-46997268 None:intergenic 45.0%
CAAATCAAATCTACCCGCCA+TGG + chr1_4:46997319-46997338 None:intergenic 45.0%
!! CATGGCGGGTAGATTTGATT+TGG - chr1_4:46997317-46997336 Msa0166030:intron 45.0%
! ACATTTGTTTGTTGCTCCGC+CGG - chr1_4:46997377-46997396 Msa0166030:intron 45.0%
CTTGTGACGGTAGAGAATTC+GGG + chr1_4:46997834-46997853 None:intergenic 45.0%
GCTTGTGACGGTAGAGAATT+CGG + chr1_4:46997835-46997854 None:intergenic 45.0%
TCTTGACCATGTGCTTGTGA+CGG + chr1_4:46997847-46997866 None:intergenic 45.0%
AGACTTCAATCGGACGATCA+TGG - chr1_4:46997940-46997959 Msa0166030:intron 45.0%
TGACTTTGTGTCGCAAGTGA+CGG - chr1_4:46997968-46997987 Msa0166030:intron 45.0%
GTCCAAATTGTAAGGGGCTT+GGG - chr1_4:46998045-46998064 Msa0166030:intron 45.0%
AGGAACTTGTGGGACACATA+AGG + chr1_4:46998148-46998167 None:intergenic 45.0%
TATGGCATGACTGAAGCATG+CGG - chr1_4:46998580-46998599 Msa0166030:intron 45.0%
!! CCTAATTGATTCGGTGGAAG+GGG + chr1_4:46998718-46998737 None:intergenic 45.0%
!! CCCTAATTGATTCGGTGGAA+GGG + chr1_4:46998719-46998738 None:intergenic 45.0%
CCCTTCCACCGAATCAATTA+GGG - chr1_4:46998716-46998735 Msa0166030:intron 45.0%
CCTTCCACCGAATCAATTAG+GGG - chr1_4:46998717-46998736 Msa0166030:intron 45.0%
TTAGGGGAAATTTGGCTACG+AGG - chr1_4:46998733-46998752 Msa0166030:intron 45.0%
CGTCCAACCCTGATCATTAA+TGG + chr1_4:46998978-46998997 None:intergenic 45.0%
CAATAAAATCTCAGCCTGCC+CGG - chr1_4:46999177-46999196 Msa0166030:intron 45.0%
! AGCAAGTCTTCAAGTTCAGC+AGG + chr1_4:46999603-46999622 None:intergenic 45.0%
ACCCCAGCATCAGAAATTTC+AGG + chr1_4:46999636-46999655 None:intergenic 45.0%
GAGCGAACAACAAAAGCAAC+TGG + chr1_4:46999772-46999791 None:intergenic 45.0%
! CGACACTCATTTTGAATCGG+AGG - chr1_4:47000237-47000256 Msa0166030:intron 45.0%
GAGGTGTATAACTCACTGTG+TGG - chr1_4:47000475-47000494 Msa0166030:intron 45.0%
! TTTTGTATGGTGCAACCTGG+AGG + chr1_4:47001176-47001195 None:intergenic 45.0%
TCCAGGTTGCACCATACAAA+AGG - chr1_4:47001175-47001194 Msa0166030:CDS 45.0%
! ACCTTTTGTATGGTGCAACC+TGG + chr1_4:47001179-47001198 None:intergenic 45.0%
GAAGATTCCAAAGTCACCCA+CGG - chr1_4:47001221-47001240 Msa0166030:CDS 45.0%
AAGATTCCAAAGTCACCCAC+GGG - chr1_4:47001222-47001241 Msa0166030:CDS 45.0%
GTCAAAGTTATGGTCTCTGC+AGG - chr1_4:47001333-47001352 Msa0166030:CDS 45.0%
!!! TTTAATATTTCATTTTTTTA+GGG + chr1_4:47000376-47000395 None:intergenic 5.0%
!! TAAGTGGGAAGGTTGATGGG+TGG + chr1_4:46996568-46996587 None:intergenic 50.0%
!! GGTTAGGGATTCACCGGTTT+GGG + chr1_4:46996665-46996684 None:intergenic 50.0%
! AGGTTAGGGATTCACCGGTT+TGG + chr1_4:46996666-46996685 None:intergenic 50.0%
GCAGAAGGTTAGGGATTCAC+CGG + chr1_4:46996671-46996690 None:intergenic 50.0%
!! ATCCGTTTCGAGTTGGCAGA+AGG + chr1_4:46996686-46996705 None:intergenic 50.0%
! AGGAGACATCCGTTTCGAGT+TGG + chr1_4:46996693-46996712 None:intergenic 50.0%
TCCCGCTCATTTCTCAGTCT+CGG - chr1_4:46996718-46996737 Msa0166030:exon 50.0%
TCCGAGACTGAGAAATGAGC+GGG + chr1_4:46996722-46996741 None:intergenic 50.0%
CTCAGTCTCGGAATCAAACG+AGG - chr1_4:46996730-46996749 Msa0166030:CDS 50.0%
GGTAGCAATAGCACCTATGG+CGG + chr1_4:46996818-46996837 None:intergenic 50.0%
GGTGGTAGCAATAGCACCTA+TGG + chr1_4:46996821-46996840 None:intergenic 50.0%
GGTGTACAAAGGACTACAGG+TGG + chr1_4:46996839-46996858 None:intergenic 50.0%
GACGGTGTACAAAGGACTAC+AGG + chr1_4:46996842-46996861 None:intergenic 50.0%
TGTACACCGTCTCTGAACTC+AGG - chr1_4:46996851-46996870 Msa0166030:intron 50.0%
CTGTATTCTTCAGGCACCAC+GGG - chr1_4:46997111-46997130 Msa0166030:intron 50.0%
TGTATTCTTCAGGCACCACG+GGG - chr1_4:46997112-46997131 Msa0166030:intron 50.0%
!! AGGGAGTGATGTTGACTCAC+GGG - chr1_4:46997142-46997161 Msa0166030:intron 50.0%
TCACGGGAACTTCATAGCGA+CGG - chr1_4:46997158-46997177 Msa0166030:intron 50.0%
TTCATAGCGACGGCAATAGC+AGG - chr1_4:46997168-46997187 Msa0166030:intron 50.0%
! GGATCAGGATTTTTACGGCG+AGG - chr1_4:46997197-46997216 Msa0166030:intron 50.0%
! GATGCATCGGCACCAAACAA+AGG + chr1_4:46997236-46997255 None:intergenic 50.0%
! GATGCATCACGTGATGGGAT+TGG - chr1_4:46997248-46997267 Msa0166030:intron 50.0%
TTATACACGCAGCTGAGGAG+AGG - chr1_4:46997279-46997298 Msa0166030:intron 50.0%
TATACACGCAGCTGAGGAGA+GGG - chr1_4:46997280-46997299 Msa0166030:intron 50.0%
TTTGGAGAAGACTTTGGCGG+CGG - chr1_4:46997335-46997354 Msa0166030:intron 50.0%
AACACAAAGGACCCCACCAA+TGG - chr1_4:46997796-46997815 Msa0166030:intron 50.0%
TCTCTACCGTCACAAGCACA+TGG - chr1_4:46997838-46997857 Msa0166030:intron 50.0%
GACTTTGTGTCGCAAGTGAC+GGG - chr1_4:46997969-46997988 Msa0166030:intron 50.0%
GGTCCAAATTGTAAGGGGCT+TGG - chr1_4:46998044-46998063 Msa0166030:intron 50.0%
AGCCCAAGCCCCTTACAATT+TGG + chr1_4:46998050-46998069 None:intergenic 50.0%
TGGTATGGGGTAATTGTGGC+AGG - chr1_4:46998555-46998574 Msa0166030:intron 50.0%
GGTATGGGGTAATTGTGGCA+GGG - chr1_4:46998556-46998575 Msa0166030:intron 50.0%
GTATGGGGTAATTGTGGCAG+GGG - chr1_4:46998557-46998576 Msa0166030:intron 50.0%
GAAAGGAAGGCTCCTTCCTT+TGG + chr1_4:46998625-46998644 None:intergenic 50.0%
GGAGCCTTCCTTTCGAATTC+AGG - chr1_4:46998631-46998650 Msa0166030:intron 50.0%
CCCCTTCCACCGAATCAATT+AGG - chr1_4:46998715-46998734 Msa0166030:intron 50.0%
!! CCCCTAATTGATTCGGTGGA+AGG + chr1_4:46998720-46998739 None:intergenic 50.0%
CGAGGACCTGTTATGATGCA+AGG - chr1_4:46998751-46998770 Msa0166030:intron 50.0%
! CGGGCAGGCTGAGATTTTAT+TGG + chr1_4:46999179-46999198 None:intergenic 50.0%
AACTGGAACCTCACCAGCTT+TGG + chr1_4:46999755-46999774 None:intergenic 50.0%
!! TGGGTCATGAGGAGCATTTG+GGG + chr1_4:47000640-47000659 None:intergenic 50.0%
!! CTGGGTCATGAGGAGCATTT+GGG + chr1_4:47000641-47000660 None:intergenic 50.0%
! ACTCGCCGCAACCTTTTGTA+TGG + chr1_4:47001189-47001208 None:intergenic 50.0%
ATCTTTCCCGTGGGTGACTT+TGG + chr1_4:47001231-47001250 None:intergenic 50.0%
! GTTGATGGGTGGTCTTGGTG+AGG + chr1_4:46996557-46996576 None:intergenic 55.0%
!! GGAAGGTTGATGGGTGGTCT+TGG + chr1_4:46996562-46996581 None:intergenic 55.0%
!! CGGAGGAAGTGGATTGGAAG+AGG + chr1_4:46996615-46996634 None:intergenic 55.0%
GAGAAATGAGCGGGAGAGGT+AGG + chr1_4:46996713-46996732 None:intergenic 55.0%
GACTGAGAAATGAGCGGGAG+AGG + chr1_4:46996717-46996736 None:intergenic 55.0%
GCAACAGCGAGGAAACAGAC+CGG + chr1_4:46996796-46996815 None:intergenic 55.0%
GGAGAGTTGTGTGAGAGCTC+TGG - chr1_4:46997048-46997067 Msa0166030:intron 55.0%
! TGAGAGCTCTGGCGAGTTTC+CGG - chr1_4:46997059-46997078 Msa0166030:intron 55.0%
AGGCACCACGGGGAAAAGTA+AGG - chr1_4:46997122-46997141 Msa0166030:intron 55.0%
GGCACCACGGGGAAAAGTAA+GGG - chr1_4:46997123-46997142 Msa0166030:intron 55.0%
!! CACTCCCTTACTTTTCCCCG+TGG + chr1_4:46997130-46997149 None:intergenic 55.0%
!! AATAGCAGGAGTGGCGGATC+AGG - chr1_4:46997182-46997201 Msa0166030:intron 55.0%
! GTGCCGATGCATCACGTGAT+GGG - chr1_4:46997243-46997262 Msa0166030:intron 55.0%
! GCATCACGTGATGGGATTGG+CGG - chr1_4:46997251-46997270 Msa0166030:intron 55.0%
TTGACCAGCTCCACCATCAC+CGG + chr1_4:46997399-46997418 None:intergenic 55.0%
!! TGATGGTGGAGCTGGTCAAG+CGG - chr1_4:46997400-46997419 Msa0166030:intron 55.0%
! TTTGTGTCGCAAGTGACGGG+AGG - chr1_4:46997972-46997991 Msa0166030:intron 55.0%
! TTGTGTCGCAAGTGACGGGA+GGG - chr1_4:46997973-46997992 Msa0166030:intron 55.0%
GGGTAATTGTGGCAGGGGTA+TGG - chr1_4:46998562-46998581 Msa0166030:intron 55.0%
GATCAGGGTTGGACGCTTAC+CGG - chr1_4:46998983-46999002 Msa0166030:intron 55.0%
TCAGCCTGCCCGGAAATCAT+GGG - chr1_4:46999187-46999206 Msa0166030:intron 55.0%
ACCCACCACCCCATGATTTC+CGG + chr1_4:46999199-46999218 None:intergenic 55.0%
TGGCATCAGGAGACCTGAGA+TGG + chr1_4:46999735-46999754 None:intergenic 55.0%
AGGTCTCCTGATGCCAAAGC+TGG - chr1_4:46999739-46999758 Msa0166030:intron 55.0%
TCCTGATGCCAAAGCTGGTG+AGG - chr1_4:46999744-46999763 Msa0166030:intron 55.0%
! ACCTCACCAGCTTTGGCATC+AGG + chr1_4:46999748-46999767 None:intergenic 55.0%
!! CCTGGGTCATGAGGAGCATT+TGG + chr1_4:47000642-47000661 None:intergenic 55.0%
CCAAATGCTCCTCATGACCC+AGG - chr1_4:47000639-47000658 Msa0166030:CDS 55.0%
GACATCTGCAGAGCCTTCCA+AGG + chr1_4:47001316-47001335 None:intergenic 55.0%
TGGTCTCTGCAGGAACAGTG+AGG - chr1_4:47001343-47001362 Msa0166030:CDS 55.0%
TCTCTGCAGGAACAGTGAGG+AGG - chr1_4:47001346-47001365 Msa0166030:CDS 55.0%
! GGTAAGGGCGATGGTGTCAG+CGG + chr1_4:46996638-46996657 None:intergenic 60.0%
!! ACCGGTTTGGGCGTCGGTAA+GGG + chr1_4:46996653-46996672 None:intergenic 60.0%
!! GGATTCACCGGTTTGGGCGT+CGG + chr1_4:46996659-46996678 None:intergenic 60.0%
TTCCTCGCTGTTGCCGCCAT+AGG - chr1_4:46996802-46996821 Msa0166030:CDS 60.0%
AGCGACGGCAATAGCAGGAG+TGG - chr1_4:46997173-46997192 Msa0166030:intron 60.0%
GACGGCAATAGCAGGAGTGG+CGG - chr1_4:46997176-46997195 Msa0166030:intron 60.0%
!! GGTGCCGATGCATCACGTGA+TGG - chr1_4:46997242-46997261 Msa0166030:intron 60.0%
GCAGCTGAGGAGAGGGAACA+CGG - chr1_4:46997287-46997306 Msa0166030:intron 60.0%
AGGGAACACGGTGGTGTCCA+TGG - chr1_4:46997299-46997318 Msa0166030:intron 60.0%
GAACACGGTGGTGTCCATGG+CGG - chr1_4:46997302-46997321 Msa0166030:intron 60.0%
AACACGGTGGTGTCCATGGC+GGG - chr1_4:46997303-46997322 Msa0166030:intron 60.0%
TGGCGGCGGTGGAGAAGTTT+AGG - chr1_4:46997349-46997368 Msa0166030:intron 60.0%
GGCGGCGGTGGAGAAGTTTA+GGG - chr1_4:46997350-46997369 Msa0166030:intron 60.0%
! GTTTGTTGCTCCGCCGGTGA+TGG - chr1_4:46997383-46997402 Msa0166030:intron 60.0%
TGGACGCTTACCGGCGATCT+TGG - chr1_4:46998992-46999011 Msa0166030:intron 60.0%
CTCAGCCTGCCCGGAAATCA+TGG - chr1_4:46999186-46999205 Msa0166030:intron 60.0%
CAGCCTGCCCGGAAATCATG+GGG - chr1_4:46999188-46999207 Msa0166030:intron 60.0%
CCCACCACCCCATGATTTCC+GGG + chr1_4:46999198-46999217 None:intergenic 60.0%
CCCGGAAATCATGGGGTGGT+GGG - chr1_4:46999195-46999214 Msa0166030:intron 60.0%
CGGTCGAATCCTGGGTCATG+AGG + chr1_4:47000651-47000670 None:intergenic 60.0%
CAGCGGCGGAGGAAGTGGAT+TGG + chr1_4:46996621-46996640 None:intergenic 65.0%
! AAGGGCGATGGTGTCAGCGG+CGG + chr1_4:46996635-46996654 None:intergenic 65.0%
!! TTGGGCGTCGGTAAGGGCGA+TGG + chr1_4:46996647-46996666 None:intergenic 65.0%
GCCCTTACCGACGCCCAAAC+CGG - chr1_4:46996649-46996668 Msa0166030:three_prime_UTR 65.0%
!! CACCGGTTTGGGCGTCGGTA+AGG + chr1_4:46996654-46996673 None:intergenic 65.0%
CACCTATGGCGGCAACAGCG+AGG + chr1_4:46996807-46996826 None:intergenic 65.0%
GCTGAGGAGAGGGAACACGG+TGG - chr1_4:46997290-46997309 Msa0166030:intron 65.0%
GGAGAAGACTTTGGCGGCGG+TGG - chr1_4:46997338-46997357 Msa0166030:intron 65.0%
! TGTTGCTCCGCCGGTGATGG+TGG - chr1_4:46997386-46997405 Msa0166030:intron 65.0%
ACCAGCTCCACCATCACCGG+CGG + chr1_4:46997396-46997415 None:intergenic 65.0%
AAGCGGCGTGAGGTGGTGAG+CGG - chr1_4:46997417-46997436 Msa0166030:intron 65.0%
TCGTCGCTGAAGCAGCTCGC+CGG - chr1_4:46997450-46997469 Msa0166030:intron 65.0%
CCCAAGAGGAGCAGCACCAC+CGG + chr1_4:46997472-46997491 None:intergenic 65.0%
!! CCGGTGGTGCTGCTCCTCTT+GGG - chr1_4:46997469-46997488 Msa0166030:intron 65.0%
CCACCCCATGATTTCCGGGC+AGG + chr1_4:46999194-46999213 None:intergenic 65.0%
CCTGCCCGGAAATCATGGGG+TGG - chr1_4:46999191-46999210 Msa0166030:intron 65.0%
GCCCGGAAATCATGGGGTGG+TGG - chr1_4:46999194-46999213 Msa0166030:intron 65.0%
GGTGTCAGCGGCGGAGGAAG+TGG + chr1_4:46996626-46996645 None:intergenic 70.0%
!! TCCGCCGGTGATGGTGGAGC+TGG - chr1_4:46997392-46997411 Msa0166030:intron 70.0%
GGAGCTGGTCAAGCGGCGTG+AGG - chr1_4:46997407-46997426 Msa0166030:intron 70.0%
GCTGGTCAAGCGGCGTGAGG+TGG - chr1_4:46997410-46997429 Msa0166030:intron 70.0%
TCGCTGAAGCAGCTCGCCGG+TGG - chr1_4:46997453-46997472 Msa0166030:intron 70.0%
!! GCCGGTGGTGCTGCTCCTCT+TGG - chr1_4:46997468-46997487 Msa0166030:intron 70.0%
! GGCGATGGTGTCAGCGGCGG+AGG + chr1_4:46996632-46996651 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 46996514 47001526 46996514 ID=Msa0166030;Name=Msa0166030
chr1_4 mRNA 46996514 47001526 46996514 ID=Msa0166030-mRNA-1;Parent=Msa0166030;Name=Msa0166030-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.6|0.5|1|1|1|6|216|516
chr1_4 exon 46996514 46996860 46996514 ID=Msa0166030-mRNA-1:exon:13586;Parent=Msa0166030-mRNA-1
chr1_4 exon 46998280 46998299 46998280 ID=Msa0166030-mRNA-1:exon:13585;Parent=Msa0166030-mRNA-1
chr1_4 exon 46998379 46998446 46998379 ID=Msa0166030-mRNA-1:exon:13584;Parent=Msa0166030-mRNA-1
chr1_4 exon 46998995 46999098 46998995 ID=Msa0166030-mRNA-1:exon:13583;Parent=Msa0166030-mRNA-1
chr1_4 exon 46999268 46999463 46999268 ID=Msa0166030-mRNA-1:exon:13582;Parent=Msa0166030-mRNA-1
chr1_4 exon 47000495 47001526 47000495 ID=Msa0166030-mRNA-1:exon:13581;Parent=Msa0166030-mRNA-1
chr1_4 CDS 47000495 47001526 47000495 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 CDS 46999268 46999463 46999268 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 CDS 46998995 46999098 46998995 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 CDS 46998379 46998446 46998379 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 CDS 46998280 46998299 46998280 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 CDS 46996730 46996860 46996730 ID=Msa0166030-mRNA-1:cds;Parent=Msa0166030-mRNA-1
chr1_4 three_prime_UTR 46996514 46996729 46996514 ID=Msa0166030-mRNA-1:three_prime_utr;Parent=Msa0166030-mRNA-1
Gene Sequence

>Msa0166030

ATGGCGAAAAACTGCTTCAACCTCAAAACGTTGACGTATTCCTCACCAAGACCACCCATCAACCTTCCCACTTATCAGAACCTTTCTCTAACTTCATTCCTCTTCCAATCCACTTCCTCCGCCGCTGACACCATCGCCCTTACCGACGCCCAAACCGGTGAATCCCTAACCTTCTGCCAACTCGAAACGGATGTCTCCTACCTCTCCCGCTCATTTCTCAGTCTCGGAATCAAACGAGGTGACGTCGTTATGCTATACGCACCTAACTCCATACGTTTACCGGTCTGTTTCCTCGCTGTTGCCGCCATAGGTGCTATTGCTACCACCTGTAGTCCTTTGTACACCGTCTCTGAACTCAGGAAGCAACTTGAAGATTCCAAACCTAAACTTGTTGTGACGGTATCAGAACTCTTCAAAAATTTTGAAGGATTGGACTTTGATTTAACTTATATAATACTGGACGATGAATCTTGGACTCGCAGATATACATCAGACGAGTTTGTTTCTAATGTTTGGTGCTACGAAGATCTTGTCGGAGAGTTGTGTGAGAGCTCTGGCGAGTTTCCGGTTGTTTTGCAATCCGACATGGCGGTGATTCTGTATTCTTCAGGCACCACGGGGAAAAGTAAGGGAGTGATGTTGACTCACGGGAACTTCATAGCGACGGCAATAGCAGGAGTGGCGGATCAGGATTTTTACGGCGAGGGGAAGAATGTGTTCCTTTGTTTGGTGCCGATGCATCACGTGATGGGATTGGCGGTGATATTATACACGCAGCTGAGGAGAGGGAACACGGTGGTGTCCATGGCGGGTAGATTTGATTTGGAGAAGACTTTGGCGGCGGTGGAGAAGTTTAGGGTGACACATTTGTTTGTTGCTCCGCCGGTGATGGTGGAGCTGGTCAAGCGGCGTGAGGTGGTGAGCGGTTATGATTTGTCGTCGCTGAAGCAGCTCGCCGGTGGTGCTGCTCCTCTTGGGAAAGATTTGATGCAAGCATGTGCTGAGATTCTGCCCAAAATTGAAATCATTCAGGGGTATGGCATGACTGAAGCATGCGGACTTGTTTCTTTTGAAAATCCAAAGGAAGGAGCCTTCCTTTCGAATTCAGGTTCAACTGGAAAACTAGTTCCAAGTGTAGAATCCCAAATTGTTAGTTTGCAAACATCGAAGCCCCTTCCACCGAATCAATTAGGGGAAATTTGGCTACGAGGACCTGTTATGATGCAAGGATACTTTAACAATCCAGAAGCAACAAAACAGACCATTAATGATCAGGGTTGGACGCTTACCGGCGATCTTGGATATTTTGATGAAAAAGGACAACTATTTGTCGTGGCACCTGCTGAACTTGAAGACTTGCTAATTTCTCATCCTGAAATTTCTGATGCTGGGGTGATTCCGTCTCCTGATGCCAAAGCTGGTTGCACCATACAAAAGGTTGCGGCGAGTGACTTTTATAGAGAAGATTCCAAAGTCACCCACGGGAAAGATTTTAAGAAAGGATCTCGTAATTTTAGATCGACAAATGATATCAAAGTTATAACAAATTAG
Protein sequence

>Msa0166030

MAKNCFNLKTLTYSSPRPPINLPTYQNLSLTSFLFQSTSSAADTIALTDAQTGESLTFCQLETDVSYLSRSFLSLGIKRGDVVMLYAPNSIRLPVCFLAVAAIGAIATTCSPLYTVSELRKQLEDSKPKLVVTVSELFKNFEGLDFDLTYIILDDESWTRRYTSDEFVSNVWCYEDLVGELCESSGEFPVVLQSDMAVILYSSGTTGKSKGVMLTHGNFIATAIAGVADQDFYGEGKNVFLCLVPMHHVMGLAVILYTQLRRGNTVVSMAGRFDLEKTLAAVEKFRVTHLFVAPPVMVELVKRREVVSGYDLSSLKQLAGGAAPLGKDLMQACAEILPKIEIIQGYGMTEACGLVSFENPKEGAFLSNSGSTGKLVPSVESQIVSLQTSKPLPPNQLGEIWLRGPVMMQGYFNNPEATKQTINDQGWTLTGDLGYFDEKGQLFVVAPAELEDLLISHPEISDAGVIPSPDAKAGCTIQKVAASDFYREDSKVTHGKDFKKGSRNFRSTNDIKVITN*