AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0102410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0102410 MtrunA17_Chr1g0156581 88.474 616 67 2 1 614 7 620 0.0 1109
Msa0102410 MtrunA17_Chr3g0142621 42.265 627 290 16 24 594 21 631 6.20e-117 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 187 sgRNAs with CRISPR-Local

Find 471 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTCTTTGGGACCAATTT+TGG 0.079863 1_3:+9158606 None:intergenic
CTCAACGAAATTAGTGTATT+TGG 0.082600 1_3:-9152814 Msa0102410:three_prime_UTR
ATTCTATATGTGAAGAAATT+AGG 0.140891 1_3:-9155736 Msa0102410:exon
CTGCTTGCTATCAAAATTTC+TGG 0.147565 1_3:+9157356 None:intergenic
AGAACATCCAAAGAGATTTA+AGG 0.181240 1_3:-9159770 Msa0102410:CDS
CATATTGAGTTCCATATAAT+TGG 0.201785 1_3:+9156042 None:intergenic
TTTGATTTGAATTGCGATTA+TGG 0.202006 1_3:-9152568 Msa0102410:three_prime_UTR
CATCAAGTTCCTTGATAATA+TGG 0.221055 1_3:+9158498 None:intergenic
CCATTTGTTTGTTGAAATCT+TGG 0.225064 1_3:+9153775 Msa0102400:CDS
GAACACACAGATAATGAAAA+AGG 0.229430 1_3:-9155531 Msa0102410:three_prime_UTR
TTCAAGAGGAACATAGTATT+TGG 0.241775 1_3:-9152733 Msa0102410:three_prime_UTR
ATTCTATTCCATTGAACTTA+TGG 0.246157 1_3:+9158781 None:intergenic
TGGTCCCAAAGAGGAGTTTC+TGG 0.248234 1_3:-9158599 Msa0102410:CDS
TTATGAACCTTAAATCTCTT+TGG 0.248483 1_3:+9159763 None:intergenic
TATTATGGTAGCCAATTATA+TGG 0.264395 1_3:-9156053 Msa0102410:CDS
CCTACATCACAAGAAATAAT+TGG 0.264657 1_3:-9155840 Msa0102410:CDS
CTCTGAGAGGGCAAAGTTAT+TGG 0.268120 1_3:-9157740 Msa0102410:CDS
CAATGTCTGCGAACTTGATT+TGG 0.278261 1_3:+9153811 Msa0102400:CDS
CACACAAATAAACTCTTCTT+TGG 0.278338 1_3:-9160036 Msa0102410:CDS
CAGAATCCTAATTGGCAAAA+TGG 0.286029 1_3:-9155921 Msa0102410:CDS
TTGCAACAACCTCGTTATTA+TGG 0.286639 1_3:-9156068 Msa0102410:CDS
TTCGCGACCGCGCTTCTTCA+TGG 0.287658 1_3:+9158833 None:intergenic
TCTTTGGTTTCTTTGAGAAT+TGG 0.294523 1_3:+9159860 None:intergenic
CTCCATTTATCATTCTGTTC+AGG 0.303424 1_3:+9156958 None:intergenic
TCTTTGAATGAAACTATTAA+TGG 0.309949 1_3:-9157772 Msa0102410:CDS
CTTGATCATCTGACTGTTGT+AGG 0.310869 1_3:-9156543 Msa0102410:CDS
AACCTGAACAGAATGATAAA+TGG 0.312337 1_3:-9156960 Msa0102410:CDS
CAATTATATGGAACTCAATA+TGG 0.313814 1_3:-9156041 Msa0102410:CDS
TCCTTGTCAACTGGAAGTTA+TGG 0.329835 1_3:-9156717 Msa0102410:CDS
AACTGGAAGTTATGGATTAA+AGG 0.337379 1_3:-9156709 Msa0102410:CDS
TGTGATATTGACTGAAAATA+AGG 0.338077 1_3:+9156624 None:intergenic
AACAGGAAATTGGCCAAAAT+TGG 0.342250 1_3:-9158619 Msa0102410:CDS
CGACTTTGATGCGTAGGAAT+TGG 0.342514 1_3:+9156585 None:intergenic
ATGCCATTCTTACTTTCATT+AGG 0.351418 1_3:+9156909 None:intergenic
TTCTATATGTGAAGAAATTA+GGG 0.352386 1_3:-9155735 Msa0102410:exon
TCAACGAAATTAGTGTATTT+GGG 0.354296 1_3:-9152813 Msa0102410:three_prime_UTR
GCTTCAACATCTGGAGTATA+TGG 0.354662 1_3:-9156846 Msa0102410:CDS
CGTGGACCCAGAATCCTAAT+TGG 0.355576 1_3:-9155929 Msa0102410:CDS
GAATGAATTCATCAAGTATA+AGG 0.361705 1_3:-9155007 Msa0102410:intron
GTTGTAGACATTCAGAAAGT+TGG 0.365354 1_3:+9155495 Msa0102400:three_prime_UTR
TTCATGACACCCACGAAGAT+TGG 0.367246 1_3:+9157031 None:intergenic
GTATTCGACCTTGTGTTTCT+CGG 0.367660 1_3:-9152760 Msa0102410:three_prime_UTR
CCATTCTTAGAAAGTAGAAT+TGG 0.376515 1_3:-9160100 Msa0102410:five_prime_UTR
CCAATTATTTCTTGTGATGT+AGG 0.376828 1_3:+9155840 Msa0102400:three_prime_UTR
TTGTAGACATTCAGAAAGTT+GGG 0.378542 1_3:+9155496 Msa0102400:three_prime_UTR
ATCGAAGTATCGAGTTCTTT+CGG 0.379175 1_3:-9156991 Msa0102410:CDS
AATGTTAATGCTTCTCTTGA+AGG 0.380928 1_3:-9158428 Msa0102410:intron
GGGTATGAGGAAAGATGATT+TGG 0.386388 1_3:+9155862 Msa0102400:three_prime_UTR
TAGAACCAGAAACTCCTCTT+TGG 0.387132 1_3:+9158594 None:intergenic
AATCTCTTGTCCTTGTCAAC+TGG 0.388105 1_3:-9156726 Msa0102410:CDS
ACTTGATGGAGAACCTTTCA+TGG 0.391137 1_3:-9158483 Msa0102410:CDS
TCTTGCCCATTTGTCTTGGA+TGG 0.392860 1_3:+9155770 Msa0102400:three_prime_UTR
TCTTGTGATGTAGGGGTATG+AGG 0.395732 1_3:+9155849 Msa0102400:three_prime_UTR
TCCAACGATTGAAGTAATCT+TGG 0.396123 1_3:+9155815 Msa0102400:three_prime_UTR
CCAATTCTACTTTCTAAGAA+TGG 0.397710 1_3:+9160100 None:intergenic
TGATGATTTACTATTGCAAT+TGG 0.398465 1_3:+9155367 Msa0102400:three_prime_UTR
AACATAGTATTTGGCTAAAC+GGG 0.399817 1_3:-9152724 Msa0102410:three_prime_UTR
AGAGAGAGAGAACAGTTAAA+GGG 0.412502 1_3:+9160281 None:intergenic
TCACAGGCTGCTTCAACATC+TGG 0.416938 1_3:-9156855 Msa0102410:CDS
CTTGCCCATTTGTCTTGGAT+GGG 0.417595 1_3:+9155771 Msa0102400:three_prime_UTR
CAATTATTTCTTGTGATGTA+GGG 0.418076 1_3:+9155841 Msa0102400:three_prime_UTR
CAGGCTATCATTGAAAGAAT+GGG 0.419258 1_3:+9155285 Msa0102400:intron
GAACATAGTATTTGGCTAAA+CGG 0.419670 1_3:-9152725 Msa0102410:three_prime_UTR
CATATTATCAAGGAACTTGA+TGG 0.420827 1_3:-9158497 Msa0102410:CDS
ATTATAATAAAGTTCGAAGT+AGG 0.427697 1_3:-9156674 Msa0102410:CDS
GGTATGAGGAAAGATGATTT+GGG 0.428294 1_3:+9155863 Msa0102400:three_prime_UTR
GCAGGCTATCATTGAAAGAA+TGG 0.433845 1_3:+9155284 Msa0102400:intron
ATGGTCTGAAAATTTGTAGA+TGG 0.435172 1_3:+9157697 None:intergenic
TCTGAGTTATGTCTAGCAAT+GGG 0.437335 1_3:-9157625 Msa0102410:CDS
ATCTTATTACACCAGTACTT+TGG 0.438490 1_3:+9155705 Msa0102400:three_prime_UTR
TCACCTGAACGTAGCTTCCT+TGG 0.441911 1_3:+9159594 None:intergenic
ACCGCGTCTAATTCAACATC+TGG 0.447105 1_3:+9157469 None:intergenic
ATTATACAGTTCTATATCTC+TGG 0.448782 1_3:-9155596 Msa0102410:three_prime_UTR
CCAAGATTTCAACAAACAAA+TGG 0.450421 1_3:-9153775 Msa0102410:three_prime_UTR
GAAGGCCTTGCATTGTGGCC+AGG 0.455023 1_3:-9157176 Msa0102410:CDS
TATATTCTAGCCTCGGTTCA+AGG 0.456972 1_3:-9157847 Msa0102410:intron
TTGCCCATTTGTCTTGGATG+GGG 0.457853 1_3:+9155772 Msa0102400:three_prime_UTR
AAGAAGAACCATAAGTTCAA+TGG 0.458103 1_3:-9158789 Msa0102410:CDS
CTTCGTGGGTGTCATGAAAC+GGG 0.458795 1_3:-9157026 Msa0102410:CDS
GTAATATACCGGAGATATGC+TGG 0.461155 1_3:+9153692 Msa0102400:CDS
CATTCTGTTGCAGAACAGAC+AGG 0.470525 1_3:+9152695 Msa0102400:CDS
AAGATCTTGCCCATTTGTCT+TGG 0.472158 1_3:+9155766 Msa0102400:three_prime_UTR
TAATCGCAATTCAAATCAAA+TGG 0.474191 1_3:+9152571 Msa0102400:exon
CAGTTAAAGGGAACATGGAA+TGG 0.475209 1_3:+9160293 None:intergenic
TCTTCGTGGGTGTCATGAAA+CGG 0.475577 1_3:-9157027 Msa0102410:CDS
ACAAATAAACTCTTCTTTGG+TGG 0.476631 1_3:-9160033 Msa0102410:intron
TTTACATCAGTCATGCGATT+CGG 0.476699 1_3:-9157091 Msa0102410:CDS
TGGAATAGAATCTCTAGAAA+AGG 0.477113 1_3:-9158769 Msa0102410:CDS
TATTCGTGATTAACCGTCTC+AGG 0.493289 1_3:+9157673 None:intergenic
TGTATCACTCATTGTGAGAC+GGG 0.493371 1_3:-9155628 Msa0102410:three_prime_UTR
AGAACCAGAAACTCCTCTTT+GGG 0.495390 1_3:+9158595 None:intergenic
AGAAATGACTATTCTGCAAT+GGG 0.495928 1_3:-9155897 Msa0102410:CDS
TAATAAAGTTCGAAGTAGGT+TGG 0.496971 1_3:-9156670 Msa0102410:CDS
TCCAAGATTACTTCAATCGT+TGG 0.497011 1_3:-9155816 Msa0102410:CDS
GTCAATATCACAGCAGCAAA+GGG 0.498383 1_3:-9156613 Msa0102410:CDS
ATGTATTATGTACACTTCCA+TGG 0.500745 1_3:+9155449 Msa0102400:three_prime_UTR
TGGTCTGAAAATTTGTAGAT+GGG 0.502055 1_3:+9157698 None:intergenic
TTTGAAAGTGAACAAAAGTA+AGG 0.502341 1_3:+9152460 Msa0102400:five_prime_UTR
TATTCCAGATTAAATATGAC+TGG 0.510410 1_3:-9157523 Msa0102410:intron
AGGGACAGATTCCAAAGTAC+TGG 0.510784 1_3:-9155716 Msa0102410:three_prime_UTR
AATCCTAATGAAAGTAAGAA+TGG 0.512870 1_3:-9156912 Msa0102410:CDS
CTTGATGAATTCATTCTAGC+GGG 0.516282 1_3:+9155014 Msa0102400:CDS
GTTCCAAGGAAGCTACGTTC+AGG 0.516402 1_3:-9159597 Msa0102410:intron
AGTTAAAGGGAACATGGAAT+GGG 0.525556 1_3:+9160294 None:intergenic
AGCTGAGACTCTGTATGCAT+TGG 0.533537 1_3:-9158549 Msa0102410:CDS
AAGTTCCTTGATAATATGGT+TGG 0.535952 1_3:+9158502 None:intergenic
AAGAAATGACTATTCTGCAA+TGG 0.540060 1_3:-9155898 Msa0102410:CDS
AAGAAGATTTGAACAACGGA+TGG 0.540666 1_3:-9152513 Msa0102410:three_prime_UTR
CTCTGAGTTATGTCTAGCAA+TGG 0.542092 1_3:-9157626 Msa0102410:CDS
GGGAACATGGAATGGGAATG+AGG 0.542529 1_3:+9160301 None:intergenic
CATCAGAAGGCCTTGCATTG+TGG 0.543118 1_3:-9157181 Msa0102410:intron
AAAACAGTCCAGCATATCTC+CGG 0.546650 1_3:-9153700 Msa0102410:three_prime_UTR
TGCCCATTTGTCTTGGATGG+GGG 0.548139 1_3:+9155773 Msa0102400:three_prime_UTR
TATGACACTGAACACAAGCC+TGG 0.552462 1_3:+9157158 None:intergenic
CATTTCAGCAGAGTCACGAC+AGG 0.554284 1_3:+9155337 Msa0102400:three_prime_UTR
TATCACAAAAGATGAGGAAG+AGG 0.554801 1_3:-9158573 Msa0102410:CDS
TGTCGTGAAAGTTGTTTACC+CGG 0.562028 1_3:-9157814 Msa0102410:CDS
GTATGAGGAAAGATGATTTG+GGG 0.565026 1_3:+9155864 Msa0102400:three_prime_UTR
TGTACATAATACATGGCTCA+AGG 0.566144 1_3:-9155440 Msa0102410:three_prime_UTR
AATTATTTCTTGTGATGTAG+GGG 0.566909 1_3:+9155842 Msa0102400:three_prime_UTR
TGAGAGGGCAAAGTTATTGG+TGG 0.568374 1_3:-9157737 Msa0102410:CDS
ACAAGCCTGGCCACAATGCA+AGG 0.568663 1_3:+9157171 None:intergenic
AAATGCAAGACACATGGAAG+AGG 0.570704 1_3:+9160207 None:intergenic
GTTGTGAAGTGAAGTTGAAG+AGG 0.571063 1_3:+9160242 None:intergenic
TGCAACAAGCAGCTCAAGCT+AGG 0.574393 1_3:-9155974 Msa0102410:CDS
ATCAAAGAATCCAATCTTCG+TGG 0.575463 1_3:-9157041 Msa0102410:CDS
GAGAACAGTTAAAGGGAACA+TGG 0.576640 1_3:+9160288 None:intergenic
CATAATACATGGCTCAAGGG+TGG 0.577888 1_3:-9155436 Msa0102410:three_prime_UTR
GTGATTAACCGTCTCAGGCA+TGG 0.580444 1_3:+9157678 None:intergenic
CTACAACAGTCAGATGATCA+AGG 0.580745 1_3:+9156544 None:intergenic
GCGTAACGACTTTGATGCGT+AGG 0.580775 1_3:+9156579 None:intergenic
AGTCAATATCACAGCAGCAA+AGG 0.582576 1_3:-9156614 Msa0102410:CDS
TGGCTCCAACCATATTATCA+AGG 0.585343 1_3:-9158507 Msa0102410:CDS
GCTATGGTGCTTCTGTTCCA+AGG 0.586786 1_3:-9159611 Msa0102410:CDS
TGTTTCTCGGAATCTTCAAG+AGG 0.587461 1_3:-9152747 Msa0102410:three_prime_UTR
AAGACTTTCGCCTTGAACCG+AGG 0.587506 1_3:+9157837 None:intergenic
CCACTATGGTGAAATATCAC+AGG 0.588135 1_3:-9156871 Msa0102410:CDS
TCTGACTGTTGTAGGACCAC+AGG 0.589844 1_3:-9156535 Msa0102410:intron
CTGTAAATTGCAATATTACG+TGG 0.599616 1_3:-9155947 Msa0102410:CDS
CACAAATTTCACAATGCGAG+AGG 0.599720 1_3:-9157495 Msa0102410:CDS
ACACGAGATTTAAGAAACCA+TGG 0.601898 1_3:-9155466 Msa0102410:three_prime_UTR
ACTTGATGAATTCATTCTAG+CGG 0.603094 1_3:+9155013 Msa0102400:CDS
GAAGAAGAAGATTTGAACAA+CGG 0.603244 1_3:-9152517 Msa0102410:three_prime_UTR
TCAAAGAATCCAATCTTCGT+GGG 0.606393 1_3:-9157040 Msa0102410:CDS
TATGAGGAAAGATGATTTGG+GGG 0.607071 1_3:+9155865 Msa0102400:three_prime_UTR
TGTAGACATTCAGAAAGTTG+GGG 0.610223 1_3:+9155497 Msa0102400:three_prime_UTR
ATAATACATGGCTCAAGGGT+GGG 0.610710 1_3:-9155435 Msa0102410:three_prime_UTR
TGACAAAATAACAAACCTTG+TGG 0.613650 1_3:-9153844 Msa0102410:intron
TCCATAACTTCCAGTTGACA+AGG 0.614158 1_3:+9156716 None:intergenic
TGGTTCTATCACAAAAGATG+AGG 0.614760 1_3:-9158579 Msa0102410:CDS
GTACATAATACATGGCTCAA+GGG 0.615332 1_3:-9155439 Msa0102410:three_prime_UTR
CAAATACACTAATTTCGTTG+AGG 0.615858 1_3:+9152815 Msa0102400:CDS
GTACACACAAGGTAATATAC+CGG 0.616996 1_3:+9153681 Msa0102400:CDS
GTGTATCACTCATTGTGAGA+CGG 0.617358 1_3:-9155629 Msa0102410:three_prime_UTR
GGAGTACGACGACGTTATTG+TGG 0.617611 1_3:-9152492 Msa0102410:three_prime_UTR
TGGTCAAGAACTCTCTGAGA+GGG 0.620494 1_3:-9157752 Msa0102410:CDS
AGTGATAAATGCAAGACACA+TGG 0.623060 1_3:+9160201 None:intergenic
GAAACACAAGGTCGAATACG+AGG 0.625603 1_3:+9152764 Msa0102400:CDS
ATGGAAGTGTACATAATACA+TGG 0.629812 1_3:-9155447 Msa0102410:three_prime_UTR
CTAACTACAAAGAAGCACAA+TGG 0.630559 1_3:-9155566 Msa0102410:three_prime_UTR
ACTGCAAGAAACAAGCAAGA+AGG 0.630829 1_3:+9155040 Msa0102400:CDS
TGGGATCTCTATTTACGACA+AGG 0.631018 1_3:-9152794 Msa0102410:three_prime_UTR
GTTGCAGTTTCGTACACACA+AGG 0.632236 1_3:+9153670 Msa0102400:intron
AGGCTATCATTGAAAGAATG+GGG 0.635618 1_3:+9155286 Msa0102400:intron
ATTCTGTTGCAGAACAGACA+GGG 0.638809 1_3:+9152696 Msa0102400:CDS
GGCCAAAATTGGTCCCAAAG+AGG 0.643574 1_3:-9158608 Msa0102410:CDS
CCTGTGATATTTCACCATAG+TGG 0.644154 1_3:+9156871 None:intergenic
ATGATCAAGGTAAACTGTCG+AGG 0.644271 1_3:+9156557 None:intergenic
TGACATCACTGATAATGAGT+TGG 0.649266 1_3:+9153736 Msa0102400:CDS
TGAAGATTCCGAGAAACACA+AGG 0.650445 1_3:+9152752 Msa0102400:CDS
AAGACTCAAAACATGAAGCG+TGG 0.654533 1_3:-9160075 Msa0102410:exon
CTTCATGTCCTGCAAAACTG+AGG 0.654726 1_3:+9158454 None:intergenic
GGTCTGAAAATTTGTAGATG+GGG 0.656195 1_3:+9157699 None:intergenic
GGCTATCATTGAAAGAATGG+GGG 0.667109 1_3:+9155287 Msa0102400:intron
GTATCACTCATTGTGAGACG+GGG 0.677728 1_3:-9155627 Msa0102410:three_prime_UTR
CTGAGTTATGTCTAGCAATG+GGG 0.684708 1_3:-9157624 Msa0102410:intron
GGTACATGCAAATTTGACGA+CGG 0.685039 1_3:+9156645 None:intergenic
TAGTTACTTGTGATACTGTG+AGG 0.687877 1_3:-9156935 Msa0102410:CDS
ATTTCAGCAGAGTCACGACA+GGG 0.688002 1_3:+9155338 Msa0102400:three_prime_UTR
ATGGTCAAGAACTCTCTGAG+AGG 0.701193 1_3:-9157753 Msa0102410:CDS
GCAACAATGTTTCCTCACAG+TGG 0.705825 1_3:-9158527 Msa0102410:CDS
ATATGGTTGGAGCCACTGTG+AGG 0.708280 1_3:+9158515 None:intergenic
ATTACAGCCATGAAGAAGCG+CGG 0.721076 1_3:-9158840 Msa0102410:intron
TATCACTCATTGTGAGACGG+GGG 0.725206 1_3:-9155626 Msa0102410:three_prime_UTR
ACCAGATGTTGAATTAGACG+CGG 0.733787 1_3:-9157470 Msa0102410:intron
AATTGGCTACCATAATAACG+AGG 0.777976 1_3:+9156059 None:intergenic
ATGAGGAAAGATGATTTGGG+GGG 0.787407 1_3:+9155866 Msa0102400:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTCTAAATTTTTA+TGG - chr1_3:9153054-9153073 Msa0102410:intron 10.0%
!!! TTATAAAATTTTAAACTGTA+TGG - chr1_3:9153710-9153729 Msa0102410:three_prime_UTR 10.0%
!!! TATAAAATTTTAAACTGTAT+GGG - chr1_3:9153711-9153730 Msa0102410:three_prime_UTR 10.0%
!! CTTAATATGAATTATTCAAA+TGG + chr1_3:9153507-9153526 Msa0102400:intron 15.0%
!!! TGTTTTTGTTAGTATATTAT+AGG - chr1_3:9153555-9153574 Msa0102410:intron 15.0%
!!! TAATGTTATTTTCAATTTAC+AGG - chr1_3:9153621-9153640 Msa0102410:intron 15.0%
!!! AATGTTATTTTCAATTTACA+GGG - chr1_3:9153622-9153641 Msa0102410:intron 15.0%
!! TCTTATATAATATAGAAGAA+GGG + chr1_3:9154358-9154377 Msa0102400:intron 15.0%
!!! ATTAATCTTTTTTTTTTGTC+AGG + chr1_3:9154499-9154518 Msa0102400:intron 15.0%
!! CAAATAATCAAAAACTATTA+TGG - chr1_3:9154555-9154574 Msa0102410:intron 15.0%
!!! ATATTACATTTTATATACAG+GGG + chr1_3:9154673-9154692 Msa0102400:intron 15.0%
!!! GATATTACATTTTATATACA+GGG + chr1_3:9154674-9154693 Msa0102400:intron 15.0%
!! AAACATGTTATTAATTACAA+AGG + chr1_3:9155200-9155219 Msa0102400:intron 15.0%
!!! AATAATAGTGGAATATAAAA+GGG + chr1_3:9158676-9158695 None:intergenic 15.0%
!!! AAATAATAGTGGAATATAAA+AGG + chr1_3:9158677-9158696 None:intergenic 15.0%
!! TTTATGATACAAAATAATAG+TGG + chr1_3:9158688-9158707 None:intergenic 15.0%
!! TTAAATAATAACCGTTTAAT+GGG + chr1_3:9159115-9159134 None:intergenic 15.0%
!! AAGTAAATATGCATTATTTA+TGG - chr1_3:9159898-9159917 Msa0102410:intron 15.0%
!!! TTTTGTTCTTAGTTTTTGAA+TGG - chr1_3:9153115-9153134 Msa0102410:intron 20.0%
!!! CTTTCTTTATATTTTTCCAT+AGG - chr1_3:9153242-9153261 Msa0102410:intron 20.0%
!! GTTTGCCATTAAAAAAAAAA+TGG + chr1_3:9153450-9153469 Msa0102400:intron 20.0%
!!! TTTTTTAATGGCAAACATTT+TGG - chr1_3:9153454-9153473 Msa0102410:intron 20.0%
!! ATAATTCATATTAAGCAGTT+AGG - chr1_3:9153512-9153531 Msa0102410:intron 20.0%
!! CAAATTAACATAAACAAACA+AGG + chr1_3:9153661-9153680 Msa0102400:intron 20.0%
!! CTCTTATATAATATAGAAGA+AGG + chr1_3:9154359-9154378 Msa0102400:intron 20.0%
!!! TTTAAAAAGTTTTATGCTGA+TGG + chr1_3:9154531-9154550 Msa0102400:intron 20.0%
!!! GGATATTACATTTTATATAC+AGG + chr1_3:9154675-9154694 Msa0102400:intron 20.0%
!! CAAATATTTGTAATGATTCA+AGG - chr1_3:9154727-9154746 Msa0102410:intron 20.0%
!! ACGAGTTAATAAATAAAGAA+AGG + chr1_3:9154855-9154874 Msa0102400:intron 20.0%
!! TCTTTGAATGAAACTATTAA+TGG - chr1_3:9154979-9154998 Msa0102410:intron 20.0%
!! AAAGTATATAGATTTCAGAA+TGG + chr1_3:9155174-9155193 Msa0102400:intron 20.0%
!! ATGAATGAACAAGTAAAAAA+TGG - chr1_3:9155430-9155449 Msa0102410:three_prime_UTR 20.0%
!!! TCTTTGATAACTTTTTGTTT+TGG + chr1_3:9155698-9155717 Msa0102400:three_prime_UTR 20.0%
!! ATTATAATAAAGTTCGAAGT+AGG - chr1_3:9156077-9156096 Msa0102410:CDS 20.0%
!! AAACTAGATTTGATAAAAGA+TGG + chr1_3:9156417-9156436 None:intergenic 20.0%
!!! TAAGATACTTTTGTAGTAAT+AGG + chr1_3:9156620-9156639 None:intergenic 20.0%
!! ATTCTATATGTGAAGAAATT+AGG - chr1_3:9157015-9157034 Msa0102410:CDS 20.0%
!! TTCTATATGTGAAGAAATTA+GGG - chr1_3:9157016-9157035 Msa0102410:CDS 20.0%
!!! TTTAGTTTTATCTGATTTGA+AGG + chr1_3:9157774-9157793 None:intergenic 20.0%
!!! AAGGACATTTTTCATATATA+TGG - chr1_3:9158251-9158270 Msa0102410:intron 20.0%
!!! TTTTTTAGAACTAAAACATG+TGG - chr1_3:9158450-9158469 Msa0102410:CDS 20.0%
!! GTTAAATAATAACCGTTTAA+TGG + chr1_3:9159116-9159135 None:intergenic 20.0%
! TTATGAACCTTAAATCTCTT+TGG + chr1_3:9152991-9153010 Msa0102400:intron 25.0%
! TTAAAAAAAAAATGGCCCTT+TGG + chr1_3:9153442-9153461 Msa0102400:intron 25.0%
!!! AAGGGCCATTTTTTTTTTAA+TGG - chr1_3:9153442-9153461 Msa0102410:intron 25.0%
! ATTGAAAATAACATTATCCG+CGG + chr1_3:9153617-9153636 Msa0102400:intron 25.0%
!! CTTTTCTTTATCATGTAAGA+TGG + chr1_3:9153945-9153964 Msa0102400:intron 25.0%
! ATTCTATTCCATTGAACTTA+TGG + chr1_3:9153973-9153992 Msa0102400:intron 25.0%
! GTATTCTAATAAGACATTTG+TGG - chr1_3:9154029-9154048 Msa0102410:intron 25.0%
!!! TTTTTTTTCCACCTTTAACT+TGG - chr1_3:9154091-9154110 Msa0102410:intron 25.0%
! AATGCAAAATTCCAAGTTAA+AGG + chr1_3:9154105-9154124 Msa0102400:intron 25.0%
!! ATTTTGCATTTTGTAGAAAC+AGG - chr1_3:9154115-9154134 Msa0102410:intron 25.0%
!! ATTTTGTAGAAACAGGAAAT+TGG - chr1_3:9154122-9154141 Msa0102410:intron 25.0%
!! CATTTTAAATGTAGAGAAGT+GGG + chr1_3:9154453-9154472 Msa0102400:intron 25.0%
!! ACATTTTAAATGTAGAGAAG+TGG + chr1_3:9154454-9154473 Msa0102400:intron 25.0%
!! AATATCCCTTATGACTTTTA+AGG - chr1_3:9154688-9154707 Msa0102410:intron 25.0%
! ATCTACCTTAAAAGTCATAA+GGG + chr1_3:9154696-9154715 Msa0102400:intron 25.0%
! AATATATGGCAAAAGAAAGT+GGG + chr1_3:9154890-9154909 Msa0102400:intron 25.0%
! TATTCCAGATTAAATATGAC+TGG - chr1_3:9155228-9155247 Msa0102410:intron 25.0%
! AAAACAAGAATTTACCACTT+AGG + chr1_3:9155481-9155500 Msa0102400:three_prime_UTR 25.0%
!!! TGTTTTGATCATAAAAACAC+AGG - chr1_3:9155495-9155514 Msa0102410:three_prime_UTR 25.0%
! AATCCTAATGAAAGTAAGAA+TGG - chr1_3:9155839-9155858 Msa0102410:CDS 25.0%
! CATAATAAGGATAGTTATCA+GGG + chr1_3:9155996-9156015 Msa0102400:three_prime_UTR 25.0%
!! TGTGATATTGACTGAAAATA+AGG + chr1_3:9156130-9156149 None:intergenic 25.0%
! AACAAATTAATCAATACCTG+TGG + chr1_3:9156235-9156254 None:intergenic 25.0%
! AAACTGAACAAACAAATTCT+AGG - chr1_3:9156268-9156287 Msa0102410:intron 25.0%
! CACTATGCATATATTAAGAA+CGG + chr1_3:9156312-9156331 None:intergenic 25.0%
! ATCAAGGGATATATTTATGA+GGG + chr1_3:9156597-9156616 None:intergenic 25.0%
!! TTTTGTAGTAATAGGATCAA+GGG + chr1_3:9156612-9156631 None:intergenic 25.0%
! TATTATGGTAGCCAATTATA+TGG - chr1_3:9156698-9156717 Msa0102410:CDS 25.0%
! CATATTGAGTTCCATATAAT+TGG + chr1_3:9156712-9156731 None:intergenic 25.0%
! CAATTATATGGAACTCAATA+TGG - chr1_3:9156710-9156729 Msa0102410:CDS 25.0%
!! AATTATTTCTTGTGATGTAG+GGG + chr1_3:9156912-9156931 None:intergenic 25.0%
!! CAATTATTTCTTGTGATGTA+GGG + chr1_3:9156913-9156932 None:intergenic 25.0%
! ATTATACAGTTCTATATCTC+TGG - chr1_3:9157155-9157174 Msa0102410:CDS 25.0%
! AACACACAGATAATGAAAAA+GGG - chr1_3:9157221-9157240 Msa0102410:intron 25.0%
! TGATGATTTACTATTGCAAT+TGG + chr1_3:9157387-9157406 None:intergenic 25.0%
! GAATGAATTCATCAAGTATA+AGG - chr1_3:9157744-9157763 Msa0102410:CDS 25.0%
! GTATGTTAAATTAGACACAA+TGG - chr1_3:9157965-9157984 Msa0102410:intron 25.0%
!!! TCACTTCTTTCATTTGTTTT+TGG + chr1_3:9158047-9158066 None:intergenic 25.0%
! AAAAATTTGTACACACAACA+AGG - chr1_3:9158196-9158215 Msa0102410:intron 25.0%
! GCAATTGCAAATTATTTACT+AGG - chr1_3:9158286-9158305 Msa0102410:intron 25.0%
! TTTAGATCAAAGTGGAAAAT+GGG - chr1_3:9158414-9158433 Msa0102410:intron 25.0%
! ATTTATAGAAAACGATGTCT+CGG + chr1_3:9158730-9158749 None:intergenic 25.0%
! GTTATCTATCTTTGTATTGT+TGG + chr1_3:9158802-9158821 None:intergenic 25.0%
! TGCTTAGATATTCAAAACAT+TGG + chr1_3:9158837-9158856 None:intergenic 25.0%
!!! TGTTTTTCAGTAATCATGTA+GGG + chr1_3:9158876-9158895 None:intergenic 25.0%
!!! TTGTTTTTCAGTAATCATGT+AGG + chr1_3:9158877-9158896 None:intergenic 25.0%
! CATGATTACTGAAAAACAAA+AGG - chr1_3:9158878-9158897 Msa0102410:intron 25.0%
! AACAAATGTTACCCATTAAA+CGG - chr1_3:9159101-9159120 Msa0102410:intron 25.0%
!! AGATTTTCAACCAATTAACT+AGG - chr1_3:9159404-9159423 Msa0102410:intron 25.0%
! TAATGAGTTCGATACAAATA+TGG + chr1_3:9159848-9159867 None:intergenic 25.0%
! TCAACGAAATTAGTGTATTT+GGG - chr1_3:9159938-9159957 Msa0102410:intron 25.0%
!! ATAAATTAATCTCCCCTTTT+TGG + chr1_3:9160117-9160136 None:intergenic 25.0%
! TAATCGCAATTCAAATCAAA+TGG + chr1_3:9160183-9160202 None:intergenic 25.0%
!!! TTTGATTTGAATTGCGATTA+TGG - chr1_3:9160183-9160202 Msa0102410:five_prime_UTR 25.0%
! TTTGAAAGTGAACAAAAGTA+AGG + chr1_3:9160294-9160313 None:intergenic 25.0%
! CCAATTCTACTTTCTAAGAA+TGG + chr1_3:9152654-9152673 Msa0102400:intron 30.0%
CCATTCTTAGAAAGTAGAAT+TGG - chr1_3:9152651-9152670 Msa0102410:intron 30.0%
CACACAAATAAACTCTTCTT+TGG - chr1_3:9152715-9152734 Msa0102410:three_prime_UTR 30.0%
ACAAATAAACTCTTCTTTGG+TGG - chr1_3:9152718-9152737 Msa0102410:three_prime_UTR 30.0%
ACCAAACAAAACTCATTTGT+CGG - chr1_3:9152776-9152795 Msa0102410:three_prime_UTR 30.0%
! TCTTTGGTTTCTTTGAGAAT+TGG + chr1_3:9152894-9152913 Msa0102400:intron 30.0%
!! CTAACTTTTTCTTGCTTCTT+TGG + chr1_3:9152910-9152929 Msa0102400:intron 30.0%
AGAACATCCAAAGAGATTTA+AGG - chr1_3:9152981-9153000 Msa0102410:intron 30.0%
! TAGTTTTTGAATGGATGCTA+TGG - chr1_3:9153124-9153143 Msa0102410:intron 30.0%
TAAAACTCATAGAGTTCCTA+TGG + chr1_3:9153261-9153280 Msa0102400:intron 30.0%
!!! TACTTACAAAAGTGCTTTTG+TGG - chr1_3:9153772-9153791 Msa0102410:three_prime_UTR 30.0%
TTCATGGCTGTAATTTCAAA+AGG + chr1_3:9153905-9153924 Msa0102400:intron 30.0%
AAGAAGAACCATAAGTTCAA+TGG - chr1_3:9153962-9153981 Msa0102410:intron 30.0%
! TGGAATAGAATCTCTAGAAA+AGG - chr1_3:9153982-9154001 Msa0102410:intron 30.0%
TACTTAGAAGACAAAGCAAA+AGG + chr1_3:9154069-9154088 Msa0102400:intron 30.0%
! AAGTTCCTTGATAATATGGT+TGG + chr1_3:9154252-9154271 Msa0102400:intron 30.0%
! CATCAAGTTCCTTGATAATA+TGG + chr1_3:9154256-9154275 Msa0102400:intron 30.0%
CATATTATCAAGGAACTTGA+TGG - chr1_3:9154254-9154273 Msa0102410:intron 30.0%
AATGTTAATGCTTCTCTTGA+AGG - chr1_3:9154323-9154342 Msa0102410:intron 30.0%
AGACATTGCATAATATATGC+AGG - chr1_3:9154421-9154440 Msa0102410:intron 30.0%
GACATTGCATAATATATGCA+GGG - chr1_3:9154422-9154441 Msa0102410:intron 30.0%
ACATTGCATAATATATGCAG+GGG - chr1_3:9154423-9154442 Msa0102410:intron 30.0%
ACAATTTAATTGTGGAGAAG+TGG - chr1_3:9154624-9154643 Msa0102410:intron 30.0%
GATCTACCTTAAAAGTCATA+AGG + chr1_3:9154697-9154716 Msa0102400:intron 30.0%
GAATATATGGCAAAAGAAAG+TGG + chr1_3:9154891-9154910 Msa0102400:intron 30.0%
TGGTCTGAAAATTTGTAGAT+GGG + chr1_3:9155056-9155075 Msa0102400:intron 30.0%
ATGGTCTGAAAATTTGTAGA+TGG + chr1_3:9155057-9155076 Msa0102400:intron 30.0%
TTGTCCAGTCATATTTAATC+TGG + chr1_3:9155235-9155254 Msa0102400:intron 30.0%
!! GCTATTAGTACTGATGTTAT+TGG - chr1_3:9155350-9155369 Msa0102410:three_prime_UTR 30.0%
!! TAGGACAATTTGTTGTTTGT+GGG + chr1_3:9155462-9155481 Msa0102400:three_prime_UTR 30.0%
!! TTAGGACAATTTGTTGTTTG+TGG + chr1_3:9155463-9155482 Msa0102400:three_prime_UTR 30.0%
AAACAACAAATTGTCCTAAG+TGG - chr1_3:9155464-9155483 Msa0102410:three_prime_UTR 30.0%
AACCTGAACAGAATGATAAA+TGG - chr1_3:9155791-9155810 Msa0102410:CDS 30.0%
ATGCCATTCTTACTTTCATT+AGG + chr1_3:9155845-9155864 Msa0102400:three_prime_UTR 30.0%
! AGTAAGATCGAGGTTTATTT+TGG - chr1_3:9155940-9155959 Msa0102410:CDS 30.0%
GCATAATAAGGATAGTTATC+AGG + chr1_3:9155997-9156016 Msa0102400:three_prime_UTR 30.0%
GATTGAAACTCTGCATAATA+AGG + chr1_3:9156009-9156028 Msa0102400:three_prime_UTR 30.0%
! AACTGGAAGTTATGGATTAA+AGG - chr1_3:9156042-9156061 Msa0102410:CDS 30.0%
TAATAAAGTTCGAAGTAGGT+TGG - chr1_3:9156081-9156100 Msa0102410:intron 30.0%
ACTCTAACAACGAAATAACA+TGG - chr1_3:9156555-9156574 Msa0102410:CDS 30.0%
GATCAAGGGATATATTTATG+AGG + chr1_3:9156598-9156617 None:intergenic 30.0%
! CTTTTGTAGTAATAGGATCA+AGG + chr1_3:9156613-9156632 None:intergenic 30.0%
TGCAGATAATTTAAGCATCA+TGG + chr1_3:9156656-9156675 None:intergenic 30.0%
CTGTAAATTGCAATATTACG+TGG - chr1_3:9156804-9156823 Msa0102410:intron 30.0%
! ATTTTGCCAATTAGGATTCT+GGG + chr1_3:9156831-9156850 None:intergenic 30.0%
! TTTCTTCCATTTTGCCAATT+AGG + chr1_3:9156839-9156858 None:intergenic 30.0%
AAGAAATGACTATTCTGCAA+TGG - chr1_3:9156853-9156872 Msa0102410:CDS 30.0%
AGAAATGACTATTCTGCAAT+GGG - chr1_3:9156854-9156873 Msa0102410:CDS 30.0%
! CCAATTATTTCTTGTGATGT+AGG + chr1_3:9156914-9156933 None:intergenic 30.0%
CCTACATCACAAGAAATAAT+TGG - chr1_3:9156911-9156930 Msa0102410:CDS 30.0%
ATCTTATTACACCAGTACTT+TGG + chr1_3:9157049-9157068 None:intergenic 30.0%
!!! CTTGCTCATTTCACTTTTTA+AGG + chr1_3:9157103-9157122 None:intergenic 30.0%
GAACACACAGATAATGAAAA+AGG - chr1_3:9157220-9157239 Msa0102410:intron 30.0%
TTGTAGACATTCAGAAAGTT+GGG + chr1_3:9157258-9157277 None:intergenic 30.0%
ATGTATTATGTACACTTCCA+TGG + chr1_3:9157305-9157324 None:intergenic 30.0%
! ATGGAAGTGTACATAATACA+TGG - chr1_3:9157304-9157323 Msa0102410:intron 30.0%
! AACACAAAACAGGTTAGTTA+AGG - chr1_3:9157491-9157510 Msa0102410:CDS 30.0%
CATAGGTACCTTATGATTTA+AGG + chr1_3:9157629-9157648 None:intergenic 30.0%
ACTTGATGAATTCATTCTAG+CGG + chr1_3:9157741-9157760 None:intergenic 30.0%
CAGATAAAACTAAATGAGCA+AGG - chr1_3:9157780-9157799 Msa0102410:CDS 30.0%
GTGTCTAATTTAACATACAG+CGG + chr1_3:9157963-9157982 None:intergenic 30.0%
TATATGAAAAATGTCCTTGC+AGG + chr1_3:9158249-9158268 None:intergenic 30.0%
TTCATATATATGGCAGCAAA+TGG - chr1_3:9158261-9158280 Msa0102410:intron 30.0%
GAAGTTGGATCTAGTATTTA+CGG - chr1_3:9158319-9158338 Msa0102410:intron 30.0%
CTTTAGATCAAAGTGGAAAA+TGG - chr1_3:9158413-9158432 Msa0102410:intron 30.0%
TTAGATCAAAGTGGAAAATG+GGG - chr1_3:9158415-9158434 Msa0102410:intron 30.0%
GCAAAAGTTGAAATACATGA+TGG + chr1_3:9158572-9158591 None:intergenic 30.0%
!!! GAAGAATCTGAGTGTTTTTT+AGG + chr1_3:9158624-9158643 None:intergenic 30.0%
ATATAAAAGGGTAGATGGAT+GGG + chr1_3:9158664-9158683 None:intergenic 30.0%
AATATAAAAGGGTAGATGGA+TGG + chr1_3:9158665-9158684 None:intergenic 30.0%
GGTAATGCTATGATGATATT+GGG + chr1_3:9158781-9158800 None:intergenic 30.0%
! TGGTAATGCTATGATGATAT+TGG + chr1_3:9158782-9158801 None:intergenic 30.0%
!! GTTTTTCAGTAATCATGTAG+GGG + chr1_3:9158875-9158894 None:intergenic 30.0%
TGACAAAATAACAAACCTTG+TGG - chr1_3:9158907-9158926 Msa0102410:intron 30.0%
!!! TTTGGTTTTTAACTTCCACA+AGG + chr1_3:9158925-9158944 None:intergenic 30.0%
! CCATTTGTTTGTTGAAATCT+TGG + chr1_3:9158979-9158998 None:intergenic 30.0%
CCAAGATTTCAACAAACAAA+TGG - chr1_3:9158976-9158995 Msa0102410:intron 30.0%
! GAAGCTGTAGTTCTATATAT+TGG + chr1_3:9159158-9159177 None:intergenic 30.0%
TGTGAACAGTAATTTATCTG+TGG + chr1_3:9159238-9159257 None:intergenic 30.0%
AAATTACTGTTCACAGATGA+TGG - chr1_3:9159243-9159262 Msa0102410:intron 30.0%
AATTACTGTTCACAGATGAT+GGG - chr1_3:9159244-9159263 Msa0102410:intron 30.0%
TTGAAGGATTCCAAGTTAAT+TGG + chr1_3:9159583-9159602 None:intergenic 30.0%
TACAAAGTTAGGGACTAATT+TGG + chr1_3:9159673-9159692 None:intergenic 30.0%
AAATTAGTCCCTAACTTTGT+AGG - chr1_3:9159672-9159691 Msa0102410:intron 30.0%
AATTAGTCCCTAACTTTGTA+GGG - chr1_3:9159673-9159692 Msa0102410:intron 30.0%
GACAATTTATCCCACTAAAT+GGG - chr1_3:9159774-9159793 Msa0102410:CDS 30.0%
ACAATTTATCCCACTAAATG+GGG - chr1_3:9159775-9159794 Msa0102410:CDS 30.0%
CAAATACACTAATTTCGTTG+AGG + chr1_3:9159939-9159958 None:intergenic 30.0%
CTCAACGAAATTAGTGTATT+TGG - chr1_3:9159937-9159956 Msa0102410:intron 30.0%
TTCAAGAGGAACATAGTATT+TGG - chr1_3:9160018-9160037 Msa0102410:intron 30.0%
GAACATAGTATTTGGCTAAA+CGG - chr1_3:9160026-9160045 Msa0102410:intron 30.0%
AACATAGTATTTGGCTAAAC+GGG - chr1_3:9160027-9160046 Msa0102410:intron 30.0%
GAAGAAGAAGATTTGAACAA+CGG - chr1_3:9160234-9160253 Msa0102410:five_prime_UTR 30.0%
AGTTAAAGGGAACATGGAAT+GGG + chr1_3:9152460-9152479 Msa0102400:five_prime_UTR 35.0%
AGAGAGAGAGAACAGTTAAA+GGG + chr1_3:9152473-9152492 Msa0102400:five_prime_UTR 35.0%
AGTGATAAATGCAAGACACA+TGG + chr1_3:9152553-9152572 Msa0102400:five_prime_UTR 35.0%
!!! ACCGACAAATGAGTTTTGTT+TGG + chr1_3:9152780-9152799 Msa0102400:CDS 35.0%
!! AGCAGCTTTTGATTAACCAA+AGG - chr1_3:9153423-9153442 Msa0102410:intron 35.0%
!! GCAGCTTTTGATTAACCAAA+GGG - chr1_3:9153424-9153443 Msa0102410:intron 35.0%
! TCACGAATAATTTTTGTCCG+CGG - chr1_3:9153597-9153616 Msa0102410:intron 35.0%
GCAAAATTCCAAGTTAAAGG+TGG + chr1_3:9154102-9154121 Msa0102400:intron 35.0%
AACAGGAAATTGGCCAAAAT+TGG - chr1_3:9154132-9154151 Msa0102410:intron 35.0%
! TGGTTCTATCACAAAAGATG+AGG - chr1_3:9154172-9154191 Msa0102410:intron 35.0%
TATCACAAAAGATGAGGAAG+AGG - chr1_3:9154178-9154197 Msa0102410:intron 35.0%
TTAAATGTAGAGAAGTGGGT+CGG + chr1_3:9154449-9154468 Msa0102400:intron 35.0%
GGCTACTTGGCAAAAAAAAA+GGG + chr1_3:9154587-9154606 Msa0102400:intron 35.0%
AGGCTACTTGGCAAAAAAAA+AGG + chr1_3:9154588-9154607 Msa0102400:intron 35.0%
GAGCTCACACAATTTAATTG+TGG - chr1_3:9154616-9154635 Msa0102410:intron 35.0%
! TACATTTTATATACAGGGGC+CGG + chr1_3:9154669-9154688 Msa0102400:intron 35.0%
TTTGCCATATATTCTAGCCT+CGG - chr1_3:9154897-9154916 Msa0102410:intron 35.0%
!! GTGATTTTTGAAGATTCTCC+GGG + chr1_3:9154958-9154977 Msa0102400:intron 35.0%
!! CGTGATTTTTGAAGATTCTC+CGG + chr1_3:9154959-9154978 Msa0102400:intron 35.0%
GGTCTGAAAATTTGTAGATG+GGG + chr1_3:9155055-9155074 Msa0102400:intron 35.0%
ATATCGCGAAAAAGTTGCAT+TGG - chr1_3:9155098-9155117 Msa0102410:intron 35.0%
TCTGAGTTATGTCTAGCAAT+GGG - chr1_3:9155126-9155145 Msa0102410:intron 35.0%
!! CTGCTTGCTATCAAAATTTC+TGG + chr1_3:9155398-9155417 Msa0102400:three_prime_UTR 35.0%
!! CTTTCTGTTGTTTCATCAGA+AGG - chr1_3:9155557-9155576 Msa0102410:three_prime_UTR 35.0%
TTTACATCAGTCATGCGATT+CGG - chr1_3:9155660-9155679 Msa0102410:three_prime_UTR 35.0%
ATCAAAGAATCCAATCTTCG+TGG - chr1_3:9155710-9155729 Msa0102410:three_prime_UTR 35.0%
TCAAAGAATCCAATCTTCGT+GGG - chr1_3:9155711-9155730 Msa0102410:three_prime_UTR 35.0%
!! ATCGAAGTATCGAGTTCTTT+CGG - chr1_3:9155760-9155779 Msa0102410:CDS 35.0%
CTCCATTTATCATTCTGTTC+AGG + chr1_3:9155796-9155815 Msa0102400:three_prime_UTR 35.0%
TAGTTACTTGTGATACTGTG+AGG - chr1_3:9155816-9155835 Msa0102410:CDS 35.0%
ATCAAAAGCAAGTAAGATCG+AGG - chr1_3:9155930-9155949 Msa0102410:CDS 35.0%
TACTCTACTATGAGTCACTA+TGG - chr1_3:9156436-9156455 Msa0102410:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG - chr1_3:9156437-9156456 Msa0102410:intron 35.0%
TAGCTGATCACTATGAAATG+AGG - chr1_3:9156494-9156513 Msa0102410:intron 35.0%
TTGCAACAACCTCGTTATTA+TGG - chr1_3:9156683-9156702 Msa0102410:CDS 35.0%
AATTGGCTACCATAATAACG+AGG + chr1_3:9156695-9156714 None:intergenic 35.0%
!! AACAAGAGCACCAAAAATTG+TGG - chr1_3:9156750-9156769 Msa0102410:intron 35.0%
!! ACAAGAGCACCAAAAATTGT+GGG - chr1_3:9156751-9156770 Msa0102410:intron 35.0%
! CATTTTGCCAATTAGGATTC+TGG + chr1_3:9156832-9156851 None:intergenic 35.0%
CAGAATCCTAATTGGCAAAA+TGG - chr1_3:9156830-9156849 Msa0102410:intron 35.0%
! TATGAGGAAAGATGATTTGG+GGG + chr1_3:9156889-9156908 None:intergenic 35.0%
GTATGAGGAAAGATGATTTG+GGG + chr1_3:9156890-9156909 None:intergenic 35.0%
GGTATGAGGAAAGATGATTT+GGG + chr1_3:9156891-9156910 None:intergenic 35.0%
TCCAAGATTACTTCAATCGT+TGG - chr1_3:9156935-9156954 Msa0102410:CDS 35.0%
TCCAACGATTGAAGTAATCT+TGG + chr1_3:9156939-9156958 None:intergenic 35.0%
! CTAACTACAAAGAAGCACAA+TGG - chr1_3:9157185-9157204 Msa0102410:intron 35.0%
TGTAGACATTCAGAAAGTTG+GGG + chr1_3:9157257-9157276 None:intergenic 35.0%
GTTGTAGACATTCAGAAAGT+TGG + chr1_3:9157259-9157278 None:intergenic 35.0%
ACACGAGATTTAAGAAACCA+TGG - chr1_3:9157285-9157304 Msa0102410:intron 35.0%
TGTACATAATACATGGCTCA+AGG - chr1_3:9157311-9157330 Msa0102410:intron 35.0%
GTACATAATACATGGCTCAA+GGG - chr1_3:9157312-9157331 Msa0102410:intron 35.0%
AGGCTATCATTGAAAGAATG+GGG + chr1_3:9157468-9157487 None:intergenic 35.0%
CAGGCTATCATTGAAAGAAT+GGG + chr1_3:9157469-9157488 None:intergenic 35.0%
! ACAGGTTAGTTAAGGAATTG+TGG - chr1_3:9157499-9157518 Msa0102410:CDS 35.0%
TCGATTTCCTTTGCTTCTTT+GGG + chr1_3:9157598-9157617 None:intergenic 35.0%
CAGTTAGGCCTTAAATCATA+AGG - chr1_3:9157618-9157637 Msa0102410:intron 35.0%
! GACATGTGATTGCTAGTTTA+AGG + chr1_3:9157661-9157680 None:intergenic 35.0%
CTTGATGAATTCATTCTAGC+GGG + chr1_3:9157740-9157759 None:intergenic 35.0%
ATGAAGTTTGTGATTGCTGA+GGG + chr1_3:9157883-9157902 None:intergenic 35.0%
AATGAAGTTTGTGATTGCTG+AGG + chr1_3:9157884-9157903 None:intergenic 35.0%
CAGCAATCACAAACTTCATT+TGG - chr1_3:9157884-9157903 Msa0102410:intron 35.0%
TGCTCAATTAGAAACTCAAC+AGG - chr1_3:9158007-9158026 Msa0102410:intron 35.0%
AAGTGAGAATAAGGTTGCTT+TGG - chr1_3:9158102-9158121 Msa0102410:intron 35.0%
!! TAAGGTTGCTTTGGATCTTT+TGG - chr1_3:9158111-9158130 Msa0102410:intron 35.0%
!! AAGGTTGCTTTGGATCTTTT+GGG - chr1_3:9158112-9158131 Msa0102410:intron 35.0%
AACAAGGCTTGTATTGAAGA+CGG - chr1_3:9158212-9158231 Msa0102410:intron 35.0%
TAGACTCACTATTCAACTGT+AGG + chr1_3:9158485-9158504 None:intergenic 35.0%
TGTCAGAATTAGAATTAGCG+GGG + chr1_3:9158532-9158551 None:intergenic 35.0%
GTGTCAGAATTAGAATTAGC+GGG + chr1_3:9158533-9158552 None:intergenic 35.0%
GGTGTCAGAATTAGAATTAG+CGG + chr1_3:9158534-9158553 None:intergenic 35.0%
GTGGAATATAAAAGGGTAGA+TGG + chr1_3:9158669-9158688 None:intergenic 35.0%
CTCGGAAATCGAGATAAATT+AGG + chr1_3:9158712-9158731 None:intergenic 35.0%
! TGACATCACTGATAATGAGT+TGG + chr1_3:9159018-9159037 None:intergenic 35.0%
GTACACACAAGGTAATATAC+CGG + chr1_3:9159073-9159092 None:intergenic 35.0%
!!! AGCATTCTGCTGTTTTAAAG+TGG + chr1_3:9159183-9159202 None:intergenic 35.0%
TGATGGGAAAATCAAACATG+AGG - chr1_3:9159260-9159279 Msa0102410:intron 35.0%
ATTTCATCCCAAAAGCTTCA+CGG - chr1_3:9159379-9159398 Msa0102410:intron 35.0%
! AATCTATCCGTGAAGCTTTT+GGG + chr1_3:9159389-9159408 None:intergenic 35.0%
! AAATCTATCCGTGAAGCTTT+TGG + chr1_3:9159390-9159409 None:intergenic 35.0%
CTTGAAAGGTCCTAGTTAAT+TGG + chr1_3:9159417-9159436 None:intergenic 35.0%
CAATTAACTAGGACCTTTCA+AGG - chr1_3:9159415-9159434 Msa0102410:intron 35.0%
ATAAAGGACATTCAAGGTCT+TGG - chr1_3:9159458-9159477 Msa0102410:intron 35.0%
TTAGACCTTACTGTTGTCAT+TGG + chr1_3:9159488-9159507 None:intergenic 35.0%
AGGTCTAAGAAGGCAAAAAA+AGG - chr1_3:9159500-9159519 Msa0102410:intron 35.0%
TGTTCTCCAACCAATTAACT+TGG - chr1_3:9159570-9159589 Msa0102410:intron 35.0%
AGGATTCCAAGTTAATTGGT+TGG + chr1_3:9159579-9159598 None:intergenic 35.0%
ACGTGAAAATGACTGTTTGA+AGG + chr1_3:9159599-9159618 None:intergenic 35.0%
!! AGTCATTTTCACGTGTGATA+TGG - chr1_3:9159605-9159624 Msa0102410:CDS 35.0%
!! GTCATTTTCACGTGTGATAT+GGG - chr1_3:9159606-9159625 Msa0102410:CDS 35.0%
AAAGTTAGGGACTAATTTGG+TGG + chr1_3:9159670-9159689 None:intergenic 35.0%
CGACAATTTATCCCACTAAA+TGG - chr1_3:9159773-9159792 Msa0102410:CDS 35.0%
ACACTAATTTCGTTGAGGTA+TGG + chr1_3:9159934-9159953 None:intergenic 35.0%
TGTTCTGCAACAGAATGAAT+CGG - chr1_3:9160062-9160081 Msa0102410:CDS 35.0%
AAACACGATCCAATCCAAAA+AGG - chr1_3:9160100-9160119 Msa0102410:five_prime_UTR 35.0%
AACACGATCCAATCCAAAAA+GGG - chr1_3:9160101-9160120 Msa0102410:five_prime_UTR 35.0%
! TTAATCTCCCCTTTTTGGAT+TGG + chr1_3:9160112-9160131 None:intergenic 35.0%
AAGAAGATTTGAACAACGGA+TGG - chr1_3:9160238-9160257 Msa0102410:five_prime_UTR 35.0%
CAGTTAAAGGGAACATGGAA+TGG + chr1_3:9152461-9152480 Msa0102400:five_prime_UTR 40.0%
GAGAACAGTTAAAGGGAACA+TGG + chr1_3:9152466-9152485 Msa0102400:five_prime_UTR 40.0%
GAGAGAGAGAGAACAGTTAA+AGG + chr1_3:9152474-9152493 Msa0102400:five_prime_UTR 40.0%
GTTGTGAAGTGAAGTTGAAG+AGG + chr1_3:9152512-9152531 Msa0102400:five_prime_UTR 40.0%
AAATGCAAGACACATGGAAG+AGG + chr1_3:9152547-9152566 Msa0102400:five_prime_UTR 40.0%
AAGACTCAAAACATGAAGCG+TGG - chr1_3:9152676-9152695 Msa0102410:intron 40.0%
AGAACCAGAAACTCCTCTTT+GGG + chr1_3:9154159-9154178 Msa0102400:intron 40.0%
TAGAACCAGAAACTCCTCTT+TGG + chr1_3:9154160-9154179 Msa0102400:intron 40.0%
TGGCTCCAACCATATTATCA+AGG - chr1_3:9154244-9154263 Msa0102410:intron 40.0%
ACTTGATGGAGAACCTTTCA+TGG - chr1_3:9154268-9154287 Msa0102410:intron 40.0%
! ACTGAGGAGTTTTCCATGAA+AGG + chr1_3:9154284-9154303 Msa0102400:intron 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG + chr1_3:9154488-9154507 Msa0102400:intron 40.0%
!!! TTTTTTGCCAAGTAGCCTAG+TGG - chr1_3:9154590-9154609 Msa0102410:intron 40.0%
! ACATTTTATATACAGGGGCC+GGG + chr1_3:9154668-9154687 Msa0102400:intron 40.0%
TGAACCGAGGCTAGAATATA+TGG + chr1_3:9154904-9154923 Msa0102400:intron 40.0%
TATATTCTAGCCTCGGTTCA+AGG - chr1_3:9154904-9154923 Msa0102410:intron 40.0%
TGTCGTGAAAGTTGTTTACC+CGG - chr1_3:9154937-9154956 Msa0102410:intron 40.0%
TATTCGTGATTAACCGTCTC+AGG + chr1_3:9155081-9155100 Msa0102400:intron 40.0%
CTCTGAGTTATGTCTAGCAA+TGG - chr1_3:9155125-9155144 Msa0102410:intron 40.0%
CTGAGTTATGTCTAGCAATG+GGG - chr1_3:9155127-9155146 Msa0102410:intron 40.0%
CACAAATTTCACAATGCGAG+AGG - chr1_3:9155256-9155275 Msa0102410:intron 40.0%
ACCAGATGTTGAATTAGACG+CGG - chr1_3:9155281-9155300 Msa0102410:intron 40.0%
CCTGTGATATTTCACCATAG+TGG + chr1_3:9155883-9155902 Msa0102400:three_prime_UTR 40.0%
CCACTATGGTGAAATATCAC+AGG - chr1_3:9155880-9155899 Msa0102410:CDS 40.0%
! GCTTCAACATCTGGAGTATA+TGG - chr1_3:9155905-9155924 Msa0102410:CDS 40.0%
ATAGTTATCAGGGCGTGAAA+GGG + chr1_3:9155986-9156005 Msa0102400:three_prime_UTR 40.0%
AATCTCTTGTCCTTGTCAAC+TGG - chr1_3:9156025-9156044 Msa0102410:CDS 40.0%
TCCTTGTCAACTGGAAGTTA+TGG - chr1_3:9156034-9156053 Msa0102410:CDS 40.0%
TCCATAACTTCCAGTTGACA+AGG + chr1_3:9156038-9156057 Msa0102400:three_prime_UTR 40.0%
GGTACATGCAAATTTGACGA+CGG + chr1_3:9156109-9156128 None:intergenic 40.0%
AGTCAATATCACAGCAGCAA+AGG - chr1_3:9156137-9156156 Msa0102410:intron 40.0%
GTCAATATCACAGCAGCAAA+GGG - chr1_3:9156138-9156157 Msa0102410:intron 40.0%
ATGATCAAGGTAAACTGTCG+AGG + chr1_3:9156197-9156216 None:intergenic 40.0%
CTACAACAGTCAGATGATCA+AGG + chr1_3:9156210-9156229 None:intergenic 40.0%
CTTGATCATCTGACTGTTGT+AGG - chr1_3:9156208-9156227 Msa0102410:intron 40.0%
GAACGGAGTATAGAAGAGTT+AGG + chr1_3:9156295-9156314 None:intergenic 40.0%
TGCATAGTGTTTGAGAAGCT+TGG - chr1_3:9156323-9156342 Msa0102410:intron 40.0%
GAGCATAGGTGTATTCATGT+GGG + chr1_3:9156468-9156487 None:intergenic 40.0%
AGAGCATAGGTGTATTCATG+TGG + chr1_3:9156469-9156488 None:intergenic 40.0%
! ATCAGCTAGAAAGAGAGCAT+AGG + chr1_3:9156482-9156501 None:intergenic 40.0%
!! CAAGAGCACCAAAAATTGTG+GGG - chr1_3:9156752-9156771 Msa0102410:intron 40.0%
!! AAGAGCACCAAAAATTGTGG+GGG - chr1_3:9156753-9156772 Msa0102410:intron 40.0%
! ATGAGGAAAGATGATTTGGG+GGG + chr1_3:9156888-9156907 None:intergenic 40.0%
GGGTATGAGGAAAGATGATT+TGG + chr1_3:9156892-9156911 None:intergenic 40.0%
AAGATCTTGCCCATTTGTCT+TGG + chr1_3:9156988-9157007 None:intergenic 40.0%
GTGTATCACTCATTGTGAGA+CGG - chr1_3:9157122-9157141 Msa0102410:CDS 40.0%
TGTATCACTCATTGTGAGAC+GGG - chr1_3:9157123-9157142 Msa0102410:CDS 40.0%
ATAATACATGGCTCAAGGGT+GGG - chr1_3:9157316-9157335 Msa0102410:intron 40.0%
GGCTATCATTGAAAGAATGG+GGG + chr1_3:9157467-9157486 None:intergenic 40.0%
GCAGGCTATCATTGAAAGAA+TGG + chr1_3:9157470-9157489 None:intergenic 40.0%
ATAGCCTGCAAACACAAAAC+AGG - chr1_3:9157481-9157500 Msa0102410:CDS 40.0%
! CTAACCTGTTTTGTGTTTGC+AGG + chr1_3:9157488-9157507 None:intergenic 40.0%
TTCTCTGCTTACGACAATTG+CGG + chr1_3:9157570-9157589 None:intergenic 40.0%
AAATGTGCCCAAAGAAGCAA+AGG - chr1_3:9157588-9157607 Msa0102410:intron 40.0%
! GTCGATTTCCTTTGCTTCTT+TGG + chr1_3:9157599-9157618 None:intergenic 40.0%
AGCAAAGGAAATCGACAGTT+AGG - chr1_3:9157603-9157622 Msa0102410:intron 40.0%
ACTGCAAGAAACAAGCAAGA+AGG + chr1_3:9157714-9157733 None:intergenic 40.0%
CGTAGTGAACAGTAAGACTT+AGG - chr1_3:9157922-9157941 Msa0102410:intron 40.0%
!! AGGTTGCTTTGGATCTTTTG+GGG - chr1_3:9158113-9158132 Msa0102410:intron 40.0%
! CGGAATCAAATTTTCCTGCA+AGG - chr1_3:9158232-9158251 Msa0102410:intron 40.0%
CTAGGTCTTCTACAAGAAGT+TGG - chr1_3:9158304-9158323 Msa0102410:intron 40.0%
!! GATGCTGCTTTAGATCAAAG+TGG - chr1_3:9158406-9158425 Msa0102410:intron 40.0%
CAATGTCTGCGAACTTGATT+TGG + chr1_3:9158943-9158962 None:intergenic 40.0%
AAAACAGTCCAGCATATCTC+CGG - chr1_3:9159051-9159070 Msa0102410:intron 40.0%
GTAATATACCGGAGATATGC+TGG + chr1_3:9159062-9159081 None:intergenic 40.0%
ACATGAGGAAGCAAAAGAGA+TGG - chr1_3:9159275-9159294 Msa0102410:intron 40.0%
CATGAGGAAGCAAAAGAGAT+GGG - chr1_3:9159276-9159295 Msa0102410:intron 40.0%
TGGGAGAAAAAACTGATGCA+CGG - chr1_3:9159295-9159314 Msa0102410:intron 40.0%
GATGCACGGTTACTAAACAA+CGG - chr1_3:9159309-9159328 Msa0102410:intron 40.0%
! GGAAGCATAAAGGACATTCA+AGG - chr1_3:9159452-9159471 Msa0102410:intron 40.0%
GATCTCCAATGACAACAGTA+AGG - chr1_3:9159480-9159499 Msa0102410:intron 40.0%
GACAACAGTAAGGTCTAAGA+AGG - chr1_3:9159490-9159509 Msa0102410:intron 40.0%
! AGAGCTAAATCACGTTTTGC+TGG + chr1_3:9159544-9159563 None:intergenic 40.0%
TCTGTTCTCTAACTCCTAGA+AGG - chr1_3:9159740-9159759 Msa0102410:intron 40.0%
CAGCTACATGGATCAATCAA+AGG - chr1_3:9159799-9159818 Msa0102410:CDS 40.0%
TGGGATCTCTATTTACGACA+AGG - chr1_3:9159957-9159976 Msa0102410:intron 40.0%
GTATTCGACCTTGTGTTTCT+CGG - chr1_3:9159991-9160010 Msa0102410:intron 40.0%
TGAAGATTCCGAGAAACACA+AGG + chr1_3:9160002-9160021 None:intergenic 40.0%
TGTTTCTCGGAATCTTCAAG+AGG - chr1_3:9160004-9160023 Msa0102410:intron 40.0%
ATTCTGTTGCAGAACAGACA+GGG + chr1_3:9160058-9160077 None:intergenic 40.0%
ACACGATCCAATCCAAAAAG+GGG - chr1_3:9160102-9160121 Msa0102410:five_prime_UTR 40.0%
ATTACAGCCATGAAGAAGCG+CGG - chr1_3:9153911-9153930 Msa0102410:intron 45.0%
!!! CTCCTCTTTGGGACCAATTT+TGG + chr1_3:9154148-9154167 Msa0102400:intron 45.0%
AGCTGAGACTCTGTATGCAT+TGG - chr1_3:9154202-9154221 Msa0102410:intron 45.0%
GCAACAATGTTTCCTCACAG+TGG - chr1_3:9154224-9154243 Msa0102410:intron 45.0%
! GGAAAACTCCTCAGTTTTGC+AGG - chr1_3:9154289-9154308 Msa0102410:intron 45.0%
CTTCATGTCCTGCAAAACTG+AGG + chr1_3:9154300-9154319 Msa0102400:intron 45.0%
! CTCAGTTTTGCAGGACATGA+AGG - chr1_3:9154298-9154317 Msa0102410:intron 45.0%
TGCCAATTGAGCTAAGCTCA+CGG + chr1_3:9154400-9154419 Msa0102400:intron 45.0%
! CATTTTATATACAGGGGCCG+GGG + chr1_3:9154667-9154686 Msa0102400:intron 45.0%
ATGGTCAAGAACTCTCTGAG+AGG - chr1_3:9154998-9155017 Msa0102410:intron 45.0%
! TGGTCAAGAACTCTCTGAGA+GGG - chr1_3:9154999-9155018 Msa0102410:intron 45.0%
! CTCTGAGAGGGCAAAGTTAT+TGG - chr1_3:9155011-9155030 Msa0102410:three_prime_UTR 45.0%
TGAGAGGGCAAAGTTATTGG+TGG - chr1_3:9155014-9155033 Msa0102410:three_prime_UTR 45.0%
! TTTTCAGACCATGCCTGAGA+CGG - chr1_3:9155065-9155084 Msa0102410:intron 45.0%
ACCGCGTCTAATTCAACATC+TGG + chr1_3:9155285-9155304 Msa0102400:intron 45.0%
GATGTTGAATTAGACGCGGT+AGG - chr1_3:9155285-9155304 Msa0102410:intron 45.0%
GTACCATGCGTTCACATTTC+AGG - chr1_3:9155372-9155391 Msa0102410:three_prime_UTR 45.0%
TATGACACTGAACACAAGCC+TGG + chr1_3:9155596-9155615 Msa0102400:three_prime_UTR 45.0%
TTCATGACACCCACGAAGAT+TGG + chr1_3:9155723-9155742 Msa0102400:three_prime_UTR 45.0%
! TCTTCGTGGGTGTCATGAAA+CGG - chr1_3:9155724-9155743 Msa0102410:three_prime_UTR 45.0%
! CTTTTGCAGCAATGCCACTA+TGG - chr1_3:9155866-9155885 Msa0102410:CDS 45.0%
TAGTTATCAGGGCGTGAAAG+GGG + chr1_3:9155985-9156004 Msa0102400:three_prime_UTR 45.0%
GATAGTTATCAGGGCGTGAA+AGG + chr1_3:9155987-9156006 Msa0102400:three_prime_UTR 45.0%
CGACTTTGATGCGTAGGAAT+TGG + chr1_3:9156169-9156188 None:intergenic 45.0%
! GTTGCATCCCCCACAATTTT+TGG + chr1_3:9156763-9156782 None:intergenic 45.0%
! TCTTGTGATGTAGGGGTATG+AGG + chr1_3:9156905-9156924 None:intergenic 45.0%
TTTCCCCCATCCAAGACAAA+TGG - chr1_3:9156975-9156994 Msa0102410:CDS 45.0%
TTCCCCCATCCAAGACAAAT+GGG - chr1_3:9156976-9156995 Msa0102410:CDS 45.0%
TTGCCCATTTGTCTTGGATG+GGG + chr1_3:9156982-9157001 None:intergenic 45.0%
CTTGCCCATTTGTCTTGGAT+GGG + chr1_3:9156983-9157002 None:intergenic 45.0%
TCTTGCCCATTTGTCTTGGA+TGG + chr1_3:9156984-9157003 None:intergenic 45.0%
AGGGACAGATTCCAAAGTAC+TGG - chr1_3:9157035-9157054 Msa0102410:CDS 45.0%
GTATCACTCATTGTGAGACG+GGG - chr1_3:9157124-9157143 Msa0102410:CDS 45.0%
TATCACTCATTGTGAGACGG+GGG - chr1_3:9157125-9157144 Msa0102410:CDS 45.0%
CATAATACATGGCTCAAGGG+TGG - chr1_3:9157315-9157334 Msa0102410:intron 45.0%
ATTTCAGCAGAGTCACGACA+GGG + chr1_3:9157416-9157435 None:intergenic 45.0%
! GTTTAAGGCTTGAGCTGCAT+AGG + chr1_3:9157646-9157665 None:intergenic 45.0%
GTTTGTGATTGCTGAGGGTT+GGG + chr1_3:9157878-9157897 None:intergenic 45.0%
AGTTTGTGATTGCTGAGGGT+TGG + chr1_3:9157879-9157898 None:intergenic 45.0%
ACTGCAGCGAAGTGAGAATA+AGG - chr1_3:9158093-9158112 Msa0102410:intron 45.0%
CAAAGTGGAAAATGGGGCAA+AGG - chr1_3:9158421-9158440 Msa0102410:intron 45.0%
TGATGGCACAAAAAGAGCTG+AGG + chr1_3:9158555-9158574 None:intergenic 45.0%
GGATGGGTGGATATGGAATA+GGG + chr1_3:9158648-9158667 None:intergenic 45.0%
TGGATGGGTGGATATGGAAT+AGG + chr1_3:9158649-9158668 None:intergenic 45.0%
TAAAAGGGTAGATGGATGGG+TGG + chr1_3:9158661-9158680 None:intergenic 45.0%
GTTGCAGTTTCGTACACACA+AGG + chr1_3:9159084-9159103 None:intergenic 45.0%
AGGACCTTTCAAGGAAAACG+CGG - chr1_3:9159424-9159443 Msa0102410:intron 45.0%
!! GAGAGTGCCCTACAAAGTTA+GGG + chr1_3:9159683-9159702 None:intergenic 45.0%
!! TGAGAGTGCCCTACAAAGTT+AGG + chr1_3:9159684-9159703 None:intergenic 45.0%
GTCGTTGTTGTAGTCCTTCT+AGG + chr1_3:9159757-9159776 None:intergenic 45.0%
TGTAGCTGACCCCATTTAGT+GGG + chr1_3:9159787-9159806 None:intergenic 45.0%
ATGTAGCTGACCCCATTTAG+TGG + chr1_3:9159788-9159807 None:intergenic 45.0%
ACTAAATGGGGTCAGCTACA+TGG - chr1_3:9159787-9159806 Msa0102410:CDS 45.0%
GAAACACAAGGTCGAATACG+AGG + chr1_3:9159990-9160009 None:intergenic 45.0%
CATTCTGTTGCAGAACAGAC+AGG + chr1_3:9160059-9160078 None:intergenic 45.0%
!! TGATTTAATATATTATAAAT+TGG + chr1_3:9158508-9158527 None:intergenic 5.0%
GCTATGGTGCTTCTGTTCCA+AGG - chr1_3:9153140-9153159 Msa0102410:intron 50.0%
GTTCCAAGGAAGCTACGTTC+AGG - chr1_3:9153154-9153173 Msa0102410:intron 50.0%
TCACCTGAACGTAGCTTCCT+TGG + chr1_3:9153160-9153179 Msa0102400:intron 50.0%
GGCCAAAATTGGTCCCAAAG+AGG - chr1_3:9154143-9154162 Msa0102410:intron 50.0%
TGGTCCCAAAGAGGAGTTTC+TGG - chr1_3:9154152-9154171 Msa0102410:intron 50.0%
ATATGGTTGGAGCCACTGTG+AGG + chr1_3:9154239-9154258 Msa0102400:intron 50.0%
CCAATTGAGCTAAGCTCACG+GGG + chr1_3:9154398-9154417 Msa0102400:intron 50.0%
GCCAATTGAGCTAAGCTCAC+GGG + chr1_3:9154399-9154418 Msa0102400:intron 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + chr1_3:9154608-9154627 Msa0102400:intron 50.0%
AAGACTTTCGCCTTGAACCG+AGG + chr1_3:9154917-9154936 Msa0102400:intron 50.0%
GTGATTAACCGTCTCAGGCA+TGG + chr1_3:9155076-9155095 Msa0102400:intron 50.0%
TGGCCTGAAATGTGAACGCA+TGG + chr1_3:9155378-9155397 Msa0102400:three_prime_UTR 50.0%
CATCAGAAGGCCTTGCATTG+TGG - chr1_3:9155570-9155589 Msa0102410:three_prime_UTR 50.0%
! CTTCGTGGGTGTCATGAAAC+GGG - chr1_3:9155725-9155744 Msa0102410:three_prime_UTR 50.0%
TCACAGGCTGCTTCAACATC+TGG - chr1_3:9155896-9155915 Msa0102410:CDS 50.0%
GCGTAACGACTTTGATGCGT+AGG + chr1_3:9156175-9156194 None:intergenic 50.0%
TCTGACTGTTGTAGGACCAC+AGG - chr1_3:9156216-9156235 Msa0102410:intron 50.0%
TGCAACAAGCAGCTCAAGCT+AGG - chr1_3:9156777-9156796 Msa0102410:intron 50.0%
CGTGGACCCAGAATCCTAAT+TGG - chr1_3:9156822-9156841 Msa0102410:intron 50.0%
! AAGATGATTTGGGGGGCACA+TGG + chr1_3:9156881-9156900 None:intergenic 50.0%
TGCCCATTTGTCTTGGATGG+GGG + chr1_3:9156981-9157000 None:intergenic 50.0%
CATTTCAGCAGAGTCACGAC+AGG + chr1_3:9157417-9157436 None:intergenic 50.0%
CATCAGAAGATGGTCGGATG+TGG + chr1_3:9158594-9158613 None:intergenic 50.0%
CATCCGACCATCTTCTGATG+TGG - chr1_3:9158594-9158613 Msa0102410:CDS 50.0%
GTGCCACATCAGAAGATGGT+CGG + chr1_3:9158600-9158619 None:intergenic 50.0%
!! AGGAGTGCCACATCAGAAGA+TGG + chr1_3:9158604-9158623 None:intergenic 50.0%
GGTAGATGGATGGGTGGATA+TGG + chr1_3:9158655-9158674 None:intergenic 50.0%
ACCTTTCAAGGAAAACGCGG+AGG - chr1_3:9159427-9159446 Msa0102410:intron 50.0%
CCTTTCAAGGAAAACGCGGA+GGG - chr1_3:9159428-9159447 Msa0102410:intron 50.0%
GGAGTACGACGACGTTATTG+TGG - chr1_3:9160259-9160278 Msa0102410:five_prime_UTR 50.0%
CCCCGTGAGCTTAGCTCAAT+TGG - chr1_3:9154395-9154414 Msa0102410:intron 55.0%
ATGTGTGAGCTCCAGCCACT+AGG - chr1_3:9154470-9154489 Msa0102410:intron 55.0%
TTGTCAGGTAGCCTAGTGGC+TGG + chr1_3:9154484-9154503 Msa0102400:intron 55.0%
GCTCTAGCCACTAGGCTACT+TGG + chr1_3:9154600-9154619 Msa0102400:intron 55.0%
GTGGAGAAGTGGTGTGTCTG+AGG - chr1_3:9154635-9154654 Msa0102410:intron 55.0%
! TGTGTCTGAGGTTCGAACCC+CGG - chr1_3:9154647-9154666 Msa0102410:intron 55.0%
ACAAGCCTGGCCACAATGCA+AGG + chr1_3:9155583-9155602 Msa0102400:three_prime_UTR 55.0%
AGGGCGTGAAAGGGGATAAG+GGG + chr1_3:9155977-9155996 Msa0102400:three_prime_UTR 55.0%
CAGGGCGTGAAAGGGGATAA+GGG + chr1_3:9155978-9155997 Msa0102400:three_prime_UTR 55.0%
TCAGGGCGTGAAAGGGGATA+AGG + chr1_3:9155979-9155998 Msa0102400:three_prime_UTR 55.0%
GTGATTGCTGAGGGTTGGGT+TGG + chr1_3:9157874-9157893 None:intergenic 55.0%
! CCCTCCGCGTTTTCCTTGAA+AGG + chr1_3:9159431-9159450 None:intergenic 55.0%
TTCAAGGAAAACGCGGAGGG+AGG - chr1_3:9159431-9159450 Msa0102410:intron 55.0%
TTCGCGACCGCGCTTCTTCA+TGG + chr1_3:9153921-9153940 Msa0102400:intron 60.0%
GAAGGCCTTGCATTGTGGCC+AGG - chr1_3:9155575-9155594 Msa0102410:three_prime_UTR 60.0%
!! TGCTGAGGGTTGGGTTGGAG+TGG + chr1_3:9157869-9157888 None:intergenic 60.0%
! CGCGGAGGGAGGAAGCATAA+AGG - chr1_3:9159442-9159461 Msa0102410:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 9152453 9160320 9152453 ID=Msa0102410;Name=Msa0102410
chr1_3 mRNA 9152453 9160320 9152453 ID=Msa0102410-mRNA-1;Parent=Msa0102410;Name=Msa0102410-mRNA-1;_AED=0.07;_eAED=0.07;_QI=235|1|1|1|0.71|0.66|15|983|614
chr1_3 exon 9152453 9152607 9152453 ID=Msa0102410-mRNA-1:exon:3701;Parent=Msa0102410-mRNA-1
chr1_3 exon 9152699 9152836 9152699 ID=Msa0102410-mRNA-1:exon:3700;Parent=Msa0102410-mRNA-1
chr1_3 exon 9153677 9153855 9153677 ID=Msa0102410-mRNA-1:exon:3699;Parent=Msa0102410-mRNA-1
chr1_3 exon 9155008 9155065 9155008 ID=Msa0102410-mRNA-1:exon:3698;Parent=Msa0102410-mRNA-1
chr1_3 exon 9155293 9156096 9155293 ID=Msa0102410-mRNA-1:exon:3697;Parent=Msa0102410-mRNA-1
chr1_3 exon 9156536 9156754 9156536 ID=Msa0102410-mRNA-1:exon:3696;Parent=Msa0102410-mRNA-1
chr1_3 exon 9156833 9157197 9156833 ID=Msa0102410-mRNA-1:exon:3695;Parent=Msa0102410-mRNA-1
chr1_3 exon 9157322 9157379 9157322 ID=Msa0102410-mRNA-1:exon:3694;Parent=Msa0102410-mRNA-1
chr1_3 exon 9157471 9157537 9157471 ID=Msa0102410-mRNA-1:exon:3693;Parent=Msa0102410-mRNA-1
chr1_3 exon 9157625 9157859 9157625 ID=Msa0102410-mRNA-1:exon:3692;Parent=Msa0102410-mRNA-1
chr1_3 exon 9158429 9158642 9158429 ID=Msa0102410-mRNA-1:exon:3691;Parent=Msa0102410-mRNA-1
chr1_3 exon 9158749 9158855 9158749 ID=Msa0102410-mRNA-1:exon:3690;Parent=Msa0102410-mRNA-1
chr1_3 exon 9159598 9159646 9159598 ID=Msa0102410-mRNA-1:exon:3689;Parent=Msa0102410-mRNA-1
chr1_3 exon 9159759 9159886 9159759 ID=Msa0102410-mRNA-1:exon:3688;Parent=Msa0102410-mRNA-1
chr1_3 exon 9160034 9160320 9160034 ID=Msa0102410-mRNA-1:exon:3687;Parent=Msa0102410-mRNA-1
chr1_3 five_prime_UTR 9160086 9160320 9160086 ID=Msa0102410-mRNA-1:five_prime_utr;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9160034 9160085 9160034 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9159759 9159886 9159759 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9159598 9159646 9159598 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9158749 9158855 9158749 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9158429 9158642 9158429 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9157625 9157859 9157625 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9157471 9157537 9157471 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9157322 9157379 9157322 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9156833 9157197 9156833 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9156536 9156754 9156536 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 CDS 9155746 9156096 9155746 ID=Msa0102410-mRNA-1:cds;Parent=Msa0102410-mRNA-1
chr1_3 three_prime_UTR 9155293 9155745 9155293 ID=Msa0102410-mRNA-1:three_prime_utr;Parent=Msa0102410-mRNA-1
chr1_3 three_prime_UTR 9155008 9155065 9155008 ID=Msa0102410-mRNA-1:three_prime_utr;Parent=Msa0102410-mRNA-1
chr1_3 three_prime_UTR 9153677 9153855 9153677 ID=Msa0102410-mRNA-1:three_prime_utr;Parent=Msa0102410-mRNA-1
chr1_3 three_prime_UTR 9152699 9152836 9152699 ID=Msa0102410-mRNA-1:three_prime_utr;Parent=Msa0102410-mRNA-1
chr1_3 three_prime_UTR 9152453 9152607 9152453 ID=Msa0102410-mRNA-1:three_prime_utr;Parent=Msa0102410-mRNA-1
Gene Sequence

>Msa0102410

ATGAAGCGTGGAGCTAAGAAGCAAAGACACACAAATAAACTCTTCTTTGGTGCTTTCCAATTCTCAAAGAAACCAAAGAAGCAAGAAAAAGTTAGAAGCTTAAGTGCTGTTACTCAAATGAGTTGTCATGTTTCTGAAAAACAACAAGAACATCCAAAGAGATTTAAGGTTCATAATAATTTTTTGAATGGATGCTATGGTGCTTCTGTTCCAAGGAAGCTACGTTCAGCCATGAAGAAGCGCGGTCGCGAATCCATCTTACATGATAAAGAAAAGAAGAACCATAAGTTCAATGGAATAGAATCTCTAGAAAAGGATAATGTAAAGAAGTCAAAAAAACAGGAAATTGGCCAAAATTGGTCCCAAAGAGGAGTTTCTGGTTCTATCACAAAAGATGAGGAAGAGGTAGCTGAGACTCTGTATGCATTGGCAACAATGTTTCCTCACAGTGGCTCCAACCATATTATCAAGGAACTTGATGGAGAACCTTTCATGGAAAACTCCTCAGTTTTGCAGGACATGAAGGAGAATGTTAATGCTTCTCTTGAAGCCTCGGTTCAAGGCGAAAGTCTTTGTCGTGAAAGTTGTTTACCCGGAGAATCTTCAAAAATCACGTCTTTGAATGAAACTATTAATGGTCAAGAACTCTCTGAGAGGGCAAAGTTATTGGTGGCATCTCATAGCACAACCCCATCTACAAATTTTCAGACCATGCCTGAGACGGTTAATCACGAATATCGCGAAAAAGTTGCATTGGATGACTCTGAGTTATGTCTAGCAATGGGATTAAATATGACTGGACAATCACAAATTTCACAATGCGAGAGGAAACCAGATGTTGAATTAGACGCGGCCAGAAATTTTGATAGCAAGCAGAAACAGCAGTTGATGAATGAACAAGTAAAAAATGAAGGCCTTGCATTGTGGCCAGGCTTGTGTTCAGTGTCATATGATGTTAGTCATAAAAGATCATGTAAAAGATGTGCAACTCATGTTTACATCAGTCATGCGATTCGGAGTTTAGAGTCGCCAAAACAAAAAGTTATCAAAGAATCCAATCTTCGTGGGTGTCATGAAACGGGAGCAAGCGAAAGATCGAAGTATCGAGTTCTTTCGGAAGTACAAAACCTGAACAGAATGATAAATGGAGTAGTTACTTGTGATACTGTGAGGAATCCTAATGAAAGTAAGAATGGCATTCTTTTGCAGCAATGCCACTATGGTGAAATATCACAGGCTGCTTCAACATCTGGAGTATATGGTCATCAAAAGCAAAGTTTCAATCTCTTGTCCTTGTCAACTGGAAGTTATGGATTAAAGGTCGACAACAATAATTATAATAAAGTTCGAAGTAGGTTGGAACCGTCGTCAAATTTGCATGTACCTTATTTTCAGTCAATATCACAGCAGCAAAGGGTAATGCCAATTCCTACGCATCAAAGTCGTTACGCCTCGACAGTTTACCTTGATCATCTGACTGTTGTAGGACCACAGCTTCAGTTGCAACAACCTCGTTATTATGGTAGCCAATTATATGGAACTCAATATGGTTCAACAGTCTCAAATAAACAAGAGCACCAAAAATTGTGGGGGATGCAACAAGCAGCTCAAGCTAGGTCATCTGTAAATTGCAATATTACGTGGACCCAGAATCCTAATTGGCAAAATGGAAGAAATGACTATTCTGCAATGGGTCCATGTGCCCCCCAAATCATCTTTCCTCATACCCCTACATCACAAGAAATAATTGGATCCAAGATTACTTCAATCGTTGGACAACAGCAGCAGCTCATTTCCCCCATCCAAGACAAATGGGCAAGATCTTCATCTCAATTCTATATGTGA

Protein sequence

>Msa0102410

MKRGAKKQRHTNKLFFGAFQFSKKPKKQEKVRSLSAVTQMSCHVSEKQQEHPKRFKVHNNFLNGCYGASVPRKLRSAMKKRGRESILHDKEKKNHKFNGIESLEKDNVKKSKKQEIGQNWSQRGVSGSITKDEEEVAETLYALATMFPHSGSNHIIKELDGEPFMENSSVLQDMKENVNASLEASVQGESLCRESCLPGESSKITSLNETINGQELSERAKLLVASHSTTPSTNFQTMPETVNHEYREKVALDDSELCLAMGLNMTGQSQISQCERKPDVELDAARNFDSKQKQQLMNEQVKNEGLALWPGLCSVSYDVSHKRSCKRCATHVYISHAIRSLESPKQKVIKESNLRGCHETGASERSKYRVLSEVQNLNRMINGVVTCDTVRNPNESKNGILLQQCHYGEISQAASTSGVYGHQKQSFNLLSLSTGSYGLKVDNNNYNKVRSRLEPSSNLHVPYFQSISQQQRVMPIPTHQSRYASTVYLDHLTVVGPQLQLQQPRYYGSQLYGTQYGSTVSNKQEHQKLWGMQQAAQARSSVNCNITWTQNPNWQNGRNDYSAMGPCAPQIIFPHTPTSQEIIGSKITSIVGQQQQLISPIQDKWARSSSQFYM*