AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097980 MtrunA17_Chr1g0156581 86.694 248 30 1 5 249 349 596 8.95e-152 436
Msa0097980 MtrunA17_Chr3g0142621 43.798 258 129 8 6 248 370 626 3.67e-47 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 54 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTGAGTTCCATATAAT+TGG 0.201785 1_3:-3883312 None:intergenic
TATTATGGTAGCCAATTATA+TGG 0.264395 1_3:+3883301 Msa0097980:CDS
CCTACATCACAAGAAATAAT+TGG 0.264657 1_3:+3883514 Msa0097980:CDS
CAGAATCCTAATTGGCAAAA+TGG 0.286029 1_3:+3883433 Msa0097980:CDS
TTGCAACAACCTCGTTATTA+TGG 0.286639 1_3:+3883286 Msa0097980:CDS
CTCCATTTATCATTCTGTTC+AGG 0.303424 1_3:-3882396 None:intergenic
CTTGATCATCTGACTGTTGT+AGG 0.310869 1_3:+3882811 Msa0097980:CDS
AACCTGAACAGAATGATAAA+TGG 0.312337 1_3:+3882394 Msa0097980:CDS
CAATTATATGGAACTCAATA+TGG 0.313814 1_3:+3883313 Msa0097980:CDS
TCCTTGTCAACTGGAAGTTA+TGG 0.329835 1_3:+3882637 Msa0097980:CDS
AACTGGAAGTTATGGATTAA+AGG 0.337379 1_3:+3882645 Msa0097980:CDS
TGTGATATTGACTGAAAATA+AGG 0.338077 1_3:-3882730 None:intergenic
CGACTTTGATGCGTAGGAAT+TGG 0.342514 1_3:-3882769 None:intergenic
ATGCCATTCTTACTTTCATT+AGG 0.351418 1_3:-3882445 None:intergenic
GCTTCAACATCTGGAGTATA+TGG 0.354662 1_3:+3882508 Msa0097980:CDS
CGTGGACCCAGAATCCTAAT+TGG 0.355576 1_3:+3883425 Msa0097980:CDS
TTCATGACACCCACGAAGAT+TGG 0.367246 1_3:-3882323 None:intergenic
CCAATTATTTCTTGTGATGT+AGG 0.376828 1_3:-3883514 Msa0097990:three_prime_UTR
ATCGAAGTATCGAGTTCTTT+CGG 0.379175 1_3:+3882363 Msa0097980:CDS
GGGTATGAGGAAAGATGATT+TGG 0.386388 1_3:-3883492 Msa0097990:three_prime_UTR
AATCTCTTGTCCTTGTCAAC+TGG 0.388105 1_3:+3882628 Msa0097980:CDS
TCTTGTGATGTAGGGGTATG+AGG 0.395732 1_3:-3883505 Msa0097990:three_prime_UTR
TCCAACGATTGAAGTAATCT+TGG 0.396123 1_3:-3883539 Msa0097990:three_prime_UTR
TCACAGGCTGCTTCAACATC+TGG 0.416938 1_3:+3882499 Msa0097980:CDS
CAATTATTTCTTGTGATGTA+GGG 0.418076 1_3:-3883513 Msa0097990:three_prime_UTR
ATTATAATAAAGTTCGAAGT+AGG 0.427697 1_3:+3882680 Msa0097980:CDS
GGTATGAGGAAAGATGATTT+GGG 0.428294 1_3:-3883491 Msa0097990:three_prime_UTR
CTTCGTGGGTGTCATGAAAC+GGG 0.458795 1_3:+3882328 Msa0097980:CDS
TCTTCGTGGGTGTCATGAAA+CGG 0.475577 1_3:+3882327 Msa0097980:CDS
AGAAATGACTATTCTGCAAT+GGG 0.495928 1_3:+3883457 Msa0097980:CDS
TAATAAAGTTCGAAGTAGGT+TGG 0.496971 1_3:+3882684 Msa0097980:CDS
GTCAATATCACAGCAGCAAA+GGG 0.498383 1_3:+3882741 Msa0097980:CDS
AATCCTAATGAAAGTAAGAA+TGG 0.512870 1_3:+3882442 Msa0097980:CDS
CTTGATGAATTCATTCTAGC+GGG 0.516282 1_3:-3884340 Msa0097990:five_prime_UTR
AAGAAATGACTATTCTGCAA+TGG 0.540060 1_3:+3883456 Msa0097980:CDS
GTATGAGGAAAGATGATTTG+GGG 0.565026 1_3:-3883490 Msa0097990:three_prime_UTR
AATTATTTCTTGTGATGTAG+GGG 0.566909 1_3:-3883512 Msa0097990:three_prime_UTR
TGCAACAAGCAGCTCAAGCT+AGG 0.574393 1_3:+3883380 Msa0097980:CDS
ATCAAAGAATCCAATCTTCG+TGG 0.575463 1_3:+3882313 Msa0097980:CDS
CTACAACAGTCAGATGATCA+AGG 0.580745 1_3:-3882810 None:intergenic
GCGTAACGACTTTGATGCGT+AGG 0.580775 1_3:-3882775 None:intergenic
AGTCAATATCACAGCAGCAA+AGG 0.582576 1_3:+3882740 Msa0097980:CDS
CCACTATGGTGAAATATCAC+AGG 0.588135 1_3:+3882483 Msa0097980:CDS
TCTGACTGTTGTAGGACCAC+AGG 0.589844 1_3:+3882819 Msa0097980:CDS
CTGTAAATTGCAATATTACG+TGG 0.599616 1_3:+3883407 Msa0097980:CDS
TCAAAGAATCCAATCTTCGT+GGG 0.606393 1_3:+3882314 Msa0097980:CDS
TATGAGGAAAGATGATTTGG+GGG 0.607071 1_3:-3883489 Msa0097990:three_prime_UTR
TCCATAACTTCCAGTTGACA+AGG 0.614158 1_3:-3882638 None:intergenic
CCTGTGATATTTCACCATAG+TGG 0.644154 1_3:-3882483 None:intergenic
ATGATCAAGGTAAACTGTCG+AGG 0.644271 1_3:-3882797 None:intergenic
GGTACATGCAAATTTGACGA+CGG 0.685039 1_3:-3882709 None:intergenic
TAGTTACTTGTGATACTGTG+AGG 0.687877 1_3:+3882419 Msa0097980:CDS
AATTGGCTACCATAATAACG+AGG 0.777976 1_3:-3883295 None:intergenic
ATGAGGAAAGATGATTTGGG+GGG 0.787407 1_3:-3883488 Msa0097990:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTTGATAACTTTTTGTTT+TGG - chr1_3:3882301-3882320 None:intergenic 20.0%
!! ATTATAATAAAGTTCGAAGT+AGG + chr1_3:3882680-3882699 Msa0097980:CDS 20.0%
!! AAACTAGATTTGATAAAAGA+TGG - chr1_3:3883020-3883039 None:intergenic 20.0%
!!! TAAGATACTTTTGTAGTAAT+AGG - chr1_3:3883223-3883242 None:intergenic 20.0%
!! ATTCTATATGTGAAGAAATT+AGG + chr1_3:3883618-3883637 Msa0097980:intron 20.0%
!! TTCTATATGTGAAGAAATTA+GGG + chr1_3:3883619-3883638 Msa0097980:intron 20.0%
!!! TCTTTGATAACTTTTTGTTT+TGG - chr1_3:3882301-3882320 None:intergenic 20.0%
!! ATTATAATAAAGTTCGAAGT+AGG + chr1_3:3882680-3882699 Msa0097980:CDS 20.0%
!! AAACTAGATTTGATAAAAGA+TGG - chr1_3:3883020-3883039 None:intergenic 20.0%
!!! TAAGATACTTTTGTAGTAAT+AGG - chr1_3:3883223-3883242 None:intergenic 20.0%
!! ATTCTATATGTGAAGAAATT+AGG + chr1_3:3883618-3883637 Msa0097980:intron 20.0%
!! TTCTATATGTGAAGAAATTA+GGG + chr1_3:3883619-3883638 Msa0097980:intron 20.0%
! AATCCTAATGAAAGTAAGAA+TGG + chr1_3:3882442-3882461 Msa0097980:CDS 25.0%
! CATAATAAGGATAGTTATCA+GGG - chr1_3:3882599-3882618 None:intergenic 25.0%
!! TGTGATATTGACTGAAAATA+AGG - chr1_3:3882733-3882752 None:intergenic 25.0%
! AACAAATTAATCAATACCTG+TGG - chr1_3:3882838-3882857 None:intergenic 25.0%
! AAACTGAACAAACAAATTCT+AGG + chr1_3:3882871-3882890 Msa0097980:intron 25.0%
! CACTATGCATATATTAAGAA+CGG - chr1_3:3882915-3882934 None:intergenic 25.0%
! ATCAAGGGATATATTTATGA+GGG - chr1_3:3883200-3883219 None:intergenic 25.0%
!! TTTTGTAGTAATAGGATCAA+GGG - chr1_3:3883215-3883234 None:intergenic 25.0%
! TATTATGGTAGCCAATTATA+TGG + chr1_3:3883301-3883320 Msa0097980:CDS 25.0%
! CATATTGAGTTCCATATAAT+TGG - chr1_3:3883315-3883334 None:intergenic 25.0%
! CAATTATATGGAACTCAATA+TGG + chr1_3:3883313-3883332 Msa0097980:CDS 25.0%
!! AATTATTTCTTGTGATGTAG+GGG - chr1_3:3883515-3883534 Msa0097990:three_prime_UTR 25.0%
!! CAATTATTTCTTGTGATGTA+GGG - chr1_3:3883516-3883535 Msa0097990:three_prime_UTR 25.0%
! ATTATACAGTTCTATATCTC+TGG + chr1_3:3883758-3883777 Msa0097980:intron 25.0%
! AACACACAGATAATGAAAAA+GGG + chr1_3:3883824-3883843 Msa0097980:intron 25.0%
! TGATGATTTACTATTGCAAT+TGG - chr1_3:3883990-3884009 Msa0097990:CDS 25.0%
! AATCCTAATGAAAGTAAGAA+TGG + chr1_3:3882442-3882461 Msa0097980:CDS 25.0%
! CATAATAAGGATAGTTATCA+GGG - chr1_3:3882599-3882618 None:intergenic 25.0%
!! TGTGATATTGACTGAAAATA+AGG - chr1_3:3882733-3882752 None:intergenic 25.0%
! AACAAATTAATCAATACCTG+TGG - chr1_3:3882838-3882857 None:intergenic 25.0%
! AAACTGAACAAACAAATTCT+AGG + chr1_3:3882871-3882890 Msa0097980:intron 25.0%
! CACTATGCATATATTAAGAA+CGG - chr1_3:3882915-3882934 None:intergenic 25.0%
! ATCAAGGGATATATTTATGA+GGG - chr1_3:3883200-3883219 None:intergenic 25.0%
!! TTTTGTAGTAATAGGATCAA+GGG - chr1_3:3883215-3883234 None:intergenic 25.0%
! TATTATGGTAGCCAATTATA+TGG + chr1_3:3883301-3883320 Msa0097980:CDS 25.0%
! CATATTGAGTTCCATATAAT+TGG - chr1_3:3883315-3883334 None:intergenic 25.0%
! CAATTATATGGAACTCAATA+TGG + chr1_3:3883313-3883332 Msa0097980:CDS 25.0%
!! AATTATTTCTTGTGATGTAG+GGG - chr1_3:3883515-3883534 Msa0097990:three_prime_UTR 25.0%
!! CAATTATTTCTTGTGATGTA+GGG - chr1_3:3883516-3883535 Msa0097990:three_prime_UTR 25.0%
! ATTATACAGTTCTATATCTC+TGG + chr1_3:3883758-3883777 Msa0097980:intron 25.0%
! AACACACAGATAATGAAAAA+GGG + chr1_3:3883824-3883843 Msa0097980:intron 25.0%
! TGATGATTTACTATTGCAAT+TGG - chr1_3:3883990-3884009 Msa0097990:CDS 25.0%
AACCTGAACAGAATGATAAA+TGG + chr1_3:3882394-3882413 Msa0097980:CDS 30.0%
ATGCCATTCTTACTTTCATT+AGG - chr1_3:3882448-3882467 None:intergenic 30.0%
! AGTAAGATCGAGGTTTATTT+TGG + chr1_3:3882543-3882562 Msa0097980:intron 30.0%
GCATAATAAGGATAGTTATC+AGG - chr1_3:3882600-3882619 None:intergenic 30.0%
GATTGAAACTCTGCATAATA+AGG - chr1_3:3882612-3882631 None:intergenic 30.0%
! AACTGGAAGTTATGGATTAA+AGG + chr1_3:3882645-3882664 Msa0097980:CDS 30.0%
TAATAAAGTTCGAAGTAGGT+TGG + chr1_3:3882684-3882703 Msa0097980:CDS 30.0%
ACTCTAACAACGAAATAACA+TGG + chr1_3:3883158-3883177 Msa0097980:intron 30.0%
GATCAAGGGATATATTTATG+AGG - chr1_3:3883201-3883220 None:intergenic 30.0%
! CTTTTGTAGTAATAGGATCA+AGG - chr1_3:3883216-3883235 None:intergenic 30.0%
TGCAGATAATTTAAGCATCA+TGG - chr1_3:3883259-3883278 None:intergenic 30.0%
CTGTAAATTGCAATATTACG+TGG + chr1_3:3883407-3883426 Msa0097980:CDS 30.0%
! ATTTTGCCAATTAGGATTCT+GGG - chr1_3:3883434-3883453 Msa0097990:three_prime_UTR 30.0%
! TTTCTTCCATTTTGCCAATT+AGG - chr1_3:3883442-3883461 Msa0097990:three_prime_UTR 30.0%
AAGAAATGACTATTCTGCAA+TGG + chr1_3:3883456-3883475 Msa0097980:CDS 30.0%
AGAAATGACTATTCTGCAAT+GGG + chr1_3:3883457-3883476 Msa0097980:CDS 30.0%
! CCAATTATTTCTTGTGATGT+AGG - chr1_3:3883517-3883536 Msa0097990:three_prime_UTR 30.0%
CCTACATCACAAGAAATAAT+TGG + chr1_3:3883514-3883533 Msa0097980:CDS 30.0%
ATCTTATTACACCAGTACTT+TGG - chr1_3:3883652-3883671 Msa0097990:three_prime_UTR 30.0%
!!! CTTGCTCATTTCACTTTTTA+AGG - chr1_3:3883706-3883725 Msa0097990:three_prime_UTR 30.0%
GAACACACAGATAATGAAAA+AGG + chr1_3:3883823-3883842 Msa0097980:intron 30.0%
TTGTAGACATTCAGAAAGTT+GGG - chr1_3:3883861-3883880 Msa0097990:three_prime_UTR 30.0%
ATGTATTATGTACACTTCCA+TGG - chr1_3:3883908-3883927 Msa0097990:CDS 30.0%
! ATGGAAGTGTACATAATACA+TGG + chr1_3:3883907-3883926 Msa0097980:intron 30.0%
! AACACAAAACAGGTTAGTTA+AGG + chr1_3:3884094-3884113 Msa0097980:intron 30.0%
CATAGGTACCTTATGATTTA+AGG - chr1_3:3884232-3884251 Msa0097990:intron 30.0%
AACCTGAACAGAATGATAAA+TGG + chr1_3:3882394-3882413 Msa0097980:CDS 30.0%
ATGCCATTCTTACTTTCATT+AGG - chr1_3:3882448-3882467 None:intergenic 30.0%
! AGTAAGATCGAGGTTTATTT+TGG + chr1_3:3882543-3882562 Msa0097980:intron 30.0%
GCATAATAAGGATAGTTATC+AGG - chr1_3:3882600-3882619 None:intergenic 30.0%
GATTGAAACTCTGCATAATA+AGG - chr1_3:3882612-3882631 None:intergenic 30.0%
! AACTGGAAGTTATGGATTAA+AGG + chr1_3:3882645-3882664 Msa0097980:CDS 30.0%
TAATAAAGTTCGAAGTAGGT+TGG + chr1_3:3882684-3882703 Msa0097980:CDS 30.0%
ACTCTAACAACGAAATAACA+TGG + chr1_3:3883158-3883177 Msa0097980:intron 30.0%
GATCAAGGGATATATTTATG+AGG - chr1_3:3883201-3883220 None:intergenic 30.0%
! CTTTTGTAGTAATAGGATCA+AGG - chr1_3:3883216-3883235 None:intergenic 30.0%
TGCAGATAATTTAAGCATCA+TGG - chr1_3:3883259-3883278 None:intergenic 30.0%
CTGTAAATTGCAATATTACG+TGG + chr1_3:3883407-3883426 Msa0097980:CDS 30.0%
! ATTTTGCCAATTAGGATTCT+GGG - chr1_3:3883434-3883453 Msa0097990:three_prime_UTR 30.0%
! TTTCTTCCATTTTGCCAATT+AGG - chr1_3:3883442-3883461 Msa0097990:three_prime_UTR 30.0%
AAGAAATGACTATTCTGCAA+TGG + chr1_3:3883456-3883475 Msa0097980:CDS 30.0%
AGAAATGACTATTCTGCAAT+GGG + chr1_3:3883457-3883476 Msa0097980:CDS 30.0%
! CCAATTATTTCTTGTGATGT+AGG - chr1_3:3883517-3883536 Msa0097990:three_prime_UTR 30.0%
CCTACATCACAAGAAATAAT+TGG + chr1_3:3883514-3883533 Msa0097980:CDS 30.0%
ATCTTATTACACCAGTACTT+TGG - chr1_3:3883652-3883671 Msa0097990:three_prime_UTR 30.0%
!!! CTTGCTCATTTCACTTTTTA+AGG - chr1_3:3883706-3883725 Msa0097990:three_prime_UTR 30.0%
GAACACACAGATAATGAAAA+AGG + chr1_3:3883823-3883842 Msa0097980:intron 30.0%
TTGTAGACATTCAGAAAGTT+GGG - chr1_3:3883861-3883880 Msa0097990:three_prime_UTR 30.0%
ATGTATTATGTACACTTCCA+TGG - chr1_3:3883908-3883927 Msa0097990:CDS 30.0%
! ATGGAAGTGTACATAATACA+TGG + chr1_3:3883907-3883926 Msa0097980:intron 30.0%
! AACACAAAACAGGTTAGTTA+AGG + chr1_3:3884094-3884113 Msa0097980:intron 30.0%
CATAGGTACCTTATGATTTA+AGG - chr1_3:3884232-3884251 Msa0097990:intron 30.0%
ATCAAAGAATCCAATCTTCG+TGG + chr1_3:3882313-3882332 Msa0097980:CDS 35.0%
TCAAAGAATCCAATCTTCGT+GGG + chr1_3:3882314-3882333 Msa0097980:CDS 35.0%
!! ATCGAAGTATCGAGTTCTTT+CGG + chr1_3:3882363-3882382 Msa0097980:CDS 35.0%
CTCCATTTATCATTCTGTTC+AGG - chr1_3:3882399-3882418 None:intergenic 35.0%
TAGTTACTTGTGATACTGTG+AGG + chr1_3:3882419-3882438 Msa0097980:CDS 35.0%
ATCAAAAGCAAGTAAGATCG+AGG + chr1_3:3882533-3882552 Msa0097980:intron 35.0%
TACTCTACTATGAGTCACTA+TGG + chr1_3:3883039-3883058 Msa0097980:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG + chr1_3:3883040-3883059 Msa0097980:intron 35.0%
TAGCTGATCACTATGAAATG+AGG + chr1_3:3883097-3883116 Msa0097980:intron 35.0%
TTGCAACAACCTCGTTATTA+TGG + chr1_3:3883286-3883305 Msa0097980:CDS 35.0%
AATTGGCTACCATAATAACG+AGG - chr1_3:3883298-3883317 None:intergenic 35.0%
!! AACAAGAGCACCAAAAATTG+TGG + chr1_3:3883353-3883372 Msa0097980:CDS 35.0%
!! ACAAGAGCACCAAAAATTGT+GGG + chr1_3:3883354-3883373 Msa0097980:CDS 35.0%
! CATTTTGCCAATTAGGATTC+TGG - chr1_3:3883435-3883454 Msa0097990:three_prime_UTR 35.0%
CAGAATCCTAATTGGCAAAA+TGG + chr1_3:3883433-3883452 Msa0097980:CDS 35.0%
! TATGAGGAAAGATGATTTGG+GGG - chr1_3:3883492-3883511 Msa0097990:three_prime_UTR 35.0%
GTATGAGGAAAGATGATTTG+GGG - chr1_3:3883493-3883512 Msa0097990:three_prime_UTR 35.0%
GGTATGAGGAAAGATGATTT+GGG - chr1_3:3883494-3883513 Msa0097990:three_prime_UTR 35.0%
TCCAAGATTACTTCAATCGT+TGG + chr1_3:3883538-3883557 Msa0097980:intron 35.0%
TCCAACGATTGAAGTAATCT+TGG - chr1_3:3883542-3883561 Msa0097990:three_prime_UTR 35.0%
! CTAACTACAAAGAAGCACAA+TGG + chr1_3:3883788-3883807 Msa0097980:intron 35.0%
TGTAGACATTCAGAAAGTTG+GGG - chr1_3:3883860-3883879 Msa0097990:three_prime_UTR 35.0%
GTTGTAGACATTCAGAAAGT+TGG - chr1_3:3883862-3883881 Msa0097990:three_prime_UTR 35.0%
ACACGAGATTTAAGAAACCA+TGG + chr1_3:3883888-3883907 Msa0097980:intron 35.0%
TGTACATAATACATGGCTCA+AGG + chr1_3:3883914-3883933 Msa0097980:intron 35.0%
GTACATAATACATGGCTCAA+GGG + chr1_3:3883915-3883934 Msa0097980:intron 35.0%
AGGCTATCATTGAAAGAATG+GGG - chr1_3:3884071-3884090 Msa0097990:intron 35.0%
CAGGCTATCATTGAAAGAAT+GGG - chr1_3:3884072-3884091 Msa0097990:intron 35.0%
! ACAGGTTAGTTAAGGAATTG+TGG + chr1_3:3884102-3884121 Msa0097980:intron 35.0%
TCGATTTCCTTTGCTTCTTT+GGG - chr1_3:3884201-3884220 Msa0097990:intron 35.0%
CAGTTAGGCCTTAAATCATA+AGG + chr1_3:3884221-3884240 Msa0097980:intron 35.0%
! GACATGTGATTGCTAGTTTA+AGG - chr1_3:3884264-3884283 Msa0097990:intron 35.0%
ATCAAAGAATCCAATCTTCG+TGG + chr1_3:3882313-3882332 Msa0097980:CDS 35.0%
TCAAAGAATCCAATCTTCGT+GGG + chr1_3:3882314-3882333 Msa0097980:CDS 35.0%
!! ATCGAAGTATCGAGTTCTTT+CGG + chr1_3:3882363-3882382 Msa0097980:CDS 35.0%
CTCCATTTATCATTCTGTTC+AGG - chr1_3:3882399-3882418 None:intergenic 35.0%
TAGTTACTTGTGATACTGTG+AGG + chr1_3:3882419-3882438 Msa0097980:CDS 35.0%
ATCAAAAGCAAGTAAGATCG+AGG + chr1_3:3882533-3882552 Msa0097980:intron 35.0%
TACTCTACTATGAGTCACTA+TGG + chr1_3:3883039-3883058 Msa0097980:intron 35.0%
ACTCTACTATGAGTCACTAT+GGG + chr1_3:3883040-3883059 Msa0097980:intron 35.0%
TAGCTGATCACTATGAAATG+AGG + chr1_3:3883097-3883116 Msa0097980:intron 35.0%
TTGCAACAACCTCGTTATTA+TGG + chr1_3:3883286-3883305 Msa0097980:CDS 35.0%
AATTGGCTACCATAATAACG+AGG - chr1_3:3883298-3883317 None:intergenic 35.0%
!! AACAAGAGCACCAAAAATTG+TGG + chr1_3:3883353-3883372 Msa0097980:CDS 35.0%
!! ACAAGAGCACCAAAAATTGT+GGG + chr1_3:3883354-3883373 Msa0097980:CDS 35.0%
! CATTTTGCCAATTAGGATTC+TGG - chr1_3:3883435-3883454 Msa0097990:three_prime_UTR 35.0%
CAGAATCCTAATTGGCAAAA+TGG + chr1_3:3883433-3883452 Msa0097980:CDS 35.0%
! TATGAGGAAAGATGATTTGG+GGG - chr1_3:3883492-3883511 Msa0097990:three_prime_UTR 35.0%
GTATGAGGAAAGATGATTTG+GGG - chr1_3:3883493-3883512 Msa0097990:three_prime_UTR 35.0%
GGTATGAGGAAAGATGATTT+GGG - chr1_3:3883494-3883513 Msa0097990:three_prime_UTR 35.0%
TCCAAGATTACTTCAATCGT+TGG + chr1_3:3883538-3883557 Msa0097980:intron 35.0%
TCCAACGATTGAAGTAATCT+TGG - chr1_3:3883542-3883561 Msa0097990:three_prime_UTR 35.0%
! CTAACTACAAAGAAGCACAA+TGG + chr1_3:3883788-3883807 Msa0097980:intron 35.0%
TGTAGACATTCAGAAAGTTG+GGG - chr1_3:3883860-3883879 Msa0097990:three_prime_UTR 35.0%
GTTGTAGACATTCAGAAAGT+TGG - chr1_3:3883862-3883881 Msa0097990:three_prime_UTR 35.0%
ACACGAGATTTAAGAAACCA+TGG + chr1_3:3883888-3883907 Msa0097980:intron 35.0%
TGTACATAATACATGGCTCA+AGG + chr1_3:3883914-3883933 Msa0097980:intron 35.0%
GTACATAATACATGGCTCAA+GGG + chr1_3:3883915-3883934 Msa0097980:intron 35.0%
AGGCTATCATTGAAAGAATG+GGG - chr1_3:3884071-3884090 Msa0097990:intron 35.0%
CAGGCTATCATTGAAAGAAT+GGG - chr1_3:3884072-3884091 Msa0097990:intron 35.0%
! ACAGGTTAGTTAAGGAATTG+TGG + chr1_3:3884102-3884121 Msa0097980:intron 35.0%
TCGATTTCCTTTGCTTCTTT+GGG - chr1_3:3884201-3884220 Msa0097990:intron 35.0%
CAGTTAGGCCTTAAATCATA+AGG + chr1_3:3884221-3884240 Msa0097980:intron 35.0%
! GACATGTGATTGCTAGTTTA+AGG - chr1_3:3884264-3884283 Msa0097990:intron 35.0%
CCTGTGATATTTCACCATAG+TGG - chr1_3:3882486-3882505 None:intergenic 40.0%
CCACTATGGTGAAATATCAC+AGG + chr1_3:3882483-3882502 Msa0097980:CDS 40.0%
! GCTTCAACATCTGGAGTATA+TGG + chr1_3:3882508-3882527 Msa0097980:CDS 40.0%
ATAGTTATCAGGGCGTGAAA+GGG - chr1_3:3882589-3882608 None:intergenic 40.0%
AATCTCTTGTCCTTGTCAAC+TGG + chr1_3:3882628-3882647 Msa0097980:CDS 40.0%
TCCTTGTCAACTGGAAGTTA+TGG + chr1_3:3882637-3882656 Msa0097980:CDS 40.0%
TCCATAACTTCCAGTTGACA+AGG - chr1_3:3882641-3882660 None:intergenic 40.0%
GGTACATGCAAATTTGACGA+CGG - chr1_3:3882712-3882731 None:intergenic 40.0%
AGTCAATATCACAGCAGCAA+AGG + chr1_3:3882740-3882759 Msa0097980:CDS 40.0%
GTCAATATCACAGCAGCAAA+GGG + chr1_3:3882741-3882760 Msa0097980:CDS 40.0%
ATGATCAAGGTAAACTGTCG+AGG - chr1_3:3882800-3882819 None:intergenic 40.0%
CTACAACAGTCAGATGATCA+AGG - chr1_3:3882813-3882832 None:intergenic 40.0%
CTTGATCATCTGACTGTTGT+AGG + chr1_3:3882811-3882830 Msa0097980:CDS 40.0%
GAACGGAGTATAGAAGAGTT+AGG - chr1_3:3882898-3882917 None:intergenic 40.0%
TGCATAGTGTTTGAGAAGCT+TGG + chr1_3:3882926-3882945 Msa0097980:intron 40.0%
GAGCATAGGTGTATTCATGT+GGG - chr1_3:3883071-3883090 None:intergenic 40.0%
AGAGCATAGGTGTATTCATG+TGG - chr1_3:3883072-3883091 None:intergenic 40.0%
! ATCAGCTAGAAAGAGAGCAT+AGG - chr1_3:3883085-3883104 None:intergenic 40.0%
!! CAAGAGCACCAAAAATTGTG+GGG + chr1_3:3883355-3883374 Msa0097980:CDS 40.0%
!! AAGAGCACCAAAAATTGTGG+GGG + chr1_3:3883356-3883375 Msa0097980:CDS 40.0%
! ATGAGGAAAGATGATTTGGG+GGG - chr1_3:3883491-3883510 Msa0097990:three_prime_UTR 40.0%
GGGTATGAGGAAAGATGATT+TGG - chr1_3:3883495-3883514 Msa0097990:three_prime_UTR 40.0%
AAGATCTTGCCCATTTGTCT+TGG - chr1_3:3883591-3883610 Msa0097990:three_prime_UTR 40.0%
GTGTATCACTCATTGTGAGA+CGG + chr1_3:3883725-3883744 Msa0097980:intron 40.0%
TGTATCACTCATTGTGAGAC+GGG + chr1_3:3883726-3883745 Msa0097980:intron 40.0%
ATAATACATGGCTCAAGGGT+GGG + chr1_3:3883919-3883938 Msa0097980:intron 40.0%
GGCTATCATTGAAAGAATGG+GGG - chr1_3:3884070-3884089 Msa0097990:intron 40.0%
GCAGGCTATCATTGAAAGAA+TGG - chr1_3:3884073-3884092 Msa0097990:intron 40.0%
ATAGCCTGCAAACACAAAAC+AGG + chr1_3:3884084-3884103 Msa0097980:intron 40.0%
! CTAACCTGTTTTGTGTTTGC+AGG - chr1_3:3884091-3884110 Msa0097990:intron 40.0%
TTCTCTGCTTACGACAATTG+CGG - chr1_3:3884173-3884192 Msa0097990:intron 40.0%
AAATGTGCCCAAAGAAGCAA+AGG + chr1_3:3884191-3884210 Msa0097980:intron 40.0%
! GTCGATTTCCTTTGCTTCTT+TGG - chr1_3:3884202-3884221 Msa0097990:intron 40.0%
AGCAAAGGAAATCGACAGTT+AGG + chr1_3:3884206-3884225 Msa0097980:intron 40.0%
ACTGCAAGAAACAAGCAAGA+AGG - chr1_3:3884317-3884336 Msa0097990:five_prime_UTR 40.0%
CCTGTGATATTTCACCATAG+TGG - chr1_3:3882486-3882505 None:intergenic 40.0%
CCACTATGGTGAAATATCAC+AGG + chr1_3:3882483-3882502 Msa0097980:CDS 40.0%
! GCTTCAACATCTGGAGTATA+TGG + chr1_3:3882508-3882527 Msa0097980:CDS 40.0%
ATAGTTATCAGGGCGTGAAA+GGG - chr1_3:3882589-3882608 None:intergenic 40.0%
AATCTCTTGTCCTTGTCAAC+TGG + chr1_3:3882628-3882647 Msa0097980:CDS 40.0%
TCCTTGTCAACTGGAAGTTA+TGG + chr1_3:3882637-3882656 Msa0097980:CDS 40.0%
TCCATAACTTCCAGTTGACA+AGG - chr1_3:3882641-3882660 None:intergenic 40.0%
GGTACATGCAAATTTGACGA+CGG - chr1_3:3882712-3882731 None:intergenic 40.0%
AGTCAATATCACAGCAGCAA+AGG + chr1_3:3882740-3882759 Msa0097980:CDS 40.0%
GTCAATATCACAGCAGCAAA+GGG + chr1_3:3882741-3882760 Msa0097980:CDS 40.0%
ATGATCAAGGTAAACTGTCG+AGG - chr1_3:3882800-3882819 None:intergenic 40.0%
CTACAACAGTCAGATGATCA+AGG - chr1_3:3882813-3882832 None:intergenic 40.0%
CTTGATCATCTGACTGTTGT+AGG + chr1_3:3882811-3882830 Msa0097980:CDS 40.0%
GAACGGAGTATAGAAGAGTT+AGG - chr1_3:3882898-3882917 None:intergenic 40.0%
TGCATAGTGTTTGAGAAGCT+TGG + chr1_3:3882926-3882945 Msa0097980:intron 40.0%
GAGCATAGGTGTATTCATGT+GGG - chr1_3:3883071-3883090 None:intergenic 40.0%
AGAGCATAGGTGTATTCATG+TGG - chr1_3:3883072-3883091 None:intergenic 40.0%
! ATCAGCTAGAAAGAGAGCAT+AGG - chr1_3:3883085-3883104 None:intergenic 40.0%
!! CAAGAGCACCAAAAATTGTG+GGG + chr1_3:3883355-3883374 Msa0097980:CDS 40.0%
!! AAGAGCACCAAAAATTGTGG+GGG + chr1_3:3883356-3883375 Msa0097980:CDS 40.0%
! ATGAGGAAAGATGATTTGGG+GGG - chr1_3:3883491-3883510 Msa0097990:three_prime_UTR 40.0%
GGGTATGAGGAAAGATGATT+TGG - chr1_3:3883495-3883514 Msa0097990:three_prime_UTR 40.0%
AAGATCTTGCCCATTTGTCT+TGG - chr1_3:3883591-3883610 Msa0097990:three_prime_UTR 40.0%
GTGTATCACTCATTGTGAGA+CGG + chr1_3:3883725-3883744 Msa0097980:intron 40.0%
TGTATCACTCATTGTGAGAC+GGG + chr1_3:3883726-3883745 Msa0097980:intron 40.0%
ATAATACATGGCTCAAGGGT+GGG + chr1_3:3883919-3883938 Msa0097980:intron 40.0%
GGCTATCATTGAAAGAATGG+GGG - chr1_3:3884070-3884089 Msa0097990:intron 40.0%
GCAGGCTATCATTGAAAGAA+TGG - chr1_3:3884073-3884092 Msa0097990:intron 40.0%
ATAGCCTGCAAACACAAAAC+AGG + chr1_3:3884084-3884103 Msa0097980:intron 40.0%
! CTAACCTGTTTTGTGTTTGC+AGG - chr1_3:3884091-3884110 Msa0097990:intron 40.0%
TTCTCTGCTTACGACAATTG+CGG - chr1_3:3884173-3884192 Msa0097990:intron 40.0%
AAATGTGCCCAAAGAAGCAA+AGG + chr1_3:3884191-3884210 Msa0097980:intron 40.0%
! GTCGATTTCCTTTGCTTCTT+TGG - chr1_3:3884202-3884221 Msa0097990:intron 40.0%
AGCAAAGGAAATCGACAGTT+AGG + chr1_3:3884206-3884225 Msa0097980:intron 40.0%
ACTGCAAGAAACAAGCAAGA+AGG - chr1_3:3884317-3884336 Msa0097990:five_prime_UTR 40.0%
TTCATGACACCCACGAAGAT+TGG - chr1_3:3882326-3882345 None:intergenic 45.0%
! TCTTCGTGGGTGTCATGAAA+CGG + chr1_3:3882327-3882346 Msa0097980:CDS 45.0%
! CTTTTGCAGCAATGCCACTA+TGG + chr1_3:3882469-3882488 Msa0097980:CDS 45.0%
TAGTTATCAGGGCGTGAAAG+GGG - chr1_3:3882588-3882607 None:intergenic 45.0%
GATAGTTATCAGGGCGTGAA+AGG - chr1_3:3882590-3882609 None:intergenic 45.0%
CGACTTTGATGCGTAGGAAT+TGG - chr1_3:3882772-3882791 None:intergenic 45.0%
! GTTGCATCCCCCACAATTTT+TGG - chr1_3:3883366-3883385 Msa0097990:three_prime_UTR 45.0%
! TCTTGTGATGTAGGGGTATG+AGG - chr1_3:3883508-3883527 Msa0097990:three_prime_UTR 45.0%
TTTCCCCCATCCAAGACAAA+TGG + chr1_3:3883578-3883597 Msa0097980:intron 45.0%
TTCCCCCATCCAAGACAAAT+GGG + chr1_3:3883579-3883598 Msa0097980:intron 45.0%
TTGCCCATTTGTCTTGGATG+GGG - chr1_3:3883585-3883604 Msa0097990:three_prime_UTR 45.0%
CTTGCCCATTTGTCTTGGAT+GGG - chr1_3:3883586-3883605 Msa0097990:three_prime_UTR 45.0%
TCTTGCCCATTTGTCTTGGA+TGG - chr1_3:3883587-3883606 Msa0097990:three_prime_UTR 45.0%
AGGGACAGATTCCAAAGTAC+TGG + chr1_3:3883638-3883657 Msa0097980:intron 45.0%
GTATCACTCATTGTGAGACG+GGG + chr1_3:3883727-3883746 Msa0097980:intron 45.0%
TATCACTCATTGTGAGACGG+GGG + chr1_3:3883728-3883747 Msa0097980:intron 45.0%
CATAATACATGGCTCAAGGG+TGG + chr1_3:3883918-3883937 Msa0097980:intron 45.0%
ATTTCAGCAGAGTCACGACA+GGG - chr1_3:3884019-3884038 Msa0097990:five_prime_UTR 45.0%
! GTTTAAGGCTTGAGCTGCAT+AGG - chr1_3:3884249-3884268 Msa0097990:intron 45.0%
TTCATGACACCCACGAAGAT+TGG - chr1_3:3882326-3882345 None:intergenic 45.0%
! TCTTCGTGGGTGTCATGAAA+CGG + chr1_3:3882327-3882346 Msa0097980:CDS 45.0%
! CTTTTGCAGCAATGCCACTA+TGG + chr1_3:3882469-3882488 Msa0097980:CDS 45.0%
TAGTTATCAGGGCGTGAAAG+GGG - chr1_3:3882588-3882607 None:intergenic 45.0%
GATAGTTATCAGGGCGTGAA+AGG - chr1_3:3882590-3882609 None:intergenic 45.0%
CGACTTTGATGCGTAGGAAT+TGG - chr1_3:3882772-3882791 None:intergenic 45.0%
! GTTGCATCCCCCACAATTTT+TGG - chr1_3:3883366-3883385 Msa0097990:three_prime_UTR 45.0%
! TCTTGTGATGTAGGGGTATG+AGG - chr1_3:3883508-3883527 Msa0097990:three_prime_UTR 45.0%
TTTCCCCCATCCAAGACAAA+TGG + chr1_3:3883578-3883597 Msa0097980:intron 45.0%
TTCCCCCATCCAAGACAAAT+GGG + chr1_3:3883579-3883598 Msa0097980:intron 45.0%
TTGCCCATTTGTCTTGGATG+GGG - chr1_3:3883585-3883604 Msa0097990:three_prime_UTR 45.0%
CTTGCCCATTTGTCTTGGAT+GGG - chr1_3:3883586-3883605 Msa0097990:three_prime_UTR 45.0%
TCTTGCCCATTTGTCTTGGA+TGG - chr1_3:3883587-3883606 Msa0097990:three_prime_UTR 45.0%
AGGGACAGATTCCAAAGTAC+TGG + chr1_3:3883638-3883657 Msa0097980:intron 45.0%
GTATCACTCATTGTGAGACG+GGG + chr1_3:3883727-3883746 Msa0097980:intron 45.0%
TATCACTCATTGTGAGACGG+GGG + chr1_3:3883728-3883747 Msa0097980:intron 45.0%
CATAATACATGGCTCAAGGG+TGG + chr1_3:3883918-3883937 Msa0097980:intron 45.0%
ATTTCAGCAGAGTCACGACA+GGG - chr1_3:3884019-3884038 Msa0097990:five_prime_UTR 45.0%
! GTTTAAGGCTTGAGCTGCAT+AGG - chr1_3:3884249-3884268 Msa0097990:intron 45.0%
! CTTCGTGGGTGTCATGAAAC+GGG + chr1_3:3882328-3882347 Msa0097980:CDS 50.0%
TCACAGGCTGCTTCAACATC+TGG + chr1_3:3882499-3882518 Msa0097980:CDS 50.0%
GCGTAACGACTTTGATGCGT+AGG - chr1_3:3882778-3882797 None:intergenic 50.0%
TCTGACTGTTGTAGGACCAC+AGG + chr1_3:3882819-3882838 Msa0097980:CDS 50.0%
TGCAACAAGCAGCTCAAGCT+AGG + chr1_3:3883380-3883399 Msa0097980:CDS 50.0%
CGTGGACCCAGAATCCTAAT+TGG + chr1_3:3883425-3883444 Msa0097980:CDS 50.0%
! AAGATGATTTGGGGGGCACA+TGG - chr1_3:3883484-3883503 Msa0097990:three_prime_UTR 50.0%
TGCCCATTTGTCTTGGATGG+GGG - chr1_3:3883584-3883603 Msa0097990:three_prime_UTR 50.0%
CATTTCAGCAGAGTCACGAC+AGG - chr1_3:3884020-3884039 Msa0097990:five_prime_UTR 50.0%
! CTTCGTGGGTGTCATGAAAC+GGG + chr1_3:3882328-3882347 Msa0097980:CDS 50.0%
TCACAGGCTGCTTCAACATC+TGG + chr1_3:3882499-3882518 Msa0097980:CDS 50.0%
GCGTAACGACTTTGATGCGT+AGG - chr1_3:3882778-3882797 None:intergenic 50.0%
TCTGACTGTTGTAGGACCAC+AGG + chr1_3:3882819-3882838 Msa0097980:CDS 50.0%
TGCAACAAGCAGCTCAAGCT+AGG + chr1_3:3883380-3883399 Msa0097980:CDS 50.0%
CGTGGACCCAGAATCCTAAT+TGG + chr1_3:3883425-3883444 Msa0097980:CDS 50.0%
! AAGATGATTTGGGGGGCACA+TGG - chr1_3:3883484-3883503 Msa0097990:three_prime_UTR 50.0%
TGCCCATTTGTCTTGGATGG+GGG - chr1_3:3883584-3883603 Msa0097990:three_prime_UTR 50.0%
CATTTCAGCAGAGTCACGAC+AGG - chr1_3:3884020-3884039 Msa0097990:five_prime_UTR 50.0%
AGGGCGTGAAAGGGGATAAG+GGG - chr1_3:3882580-3882599 None:intergenic 55.0%
CAGGGCGTGAAAGGGGATAA+GGG - chr1_3:3882581-3882600 None:intergenic 55.0%
TCAGGGCGTGAAAGGGGATA+AGG - chr1_3:3882582-3882601 None:intergenic 55.0%
AGGGCGTGAAAGGGGATAAG+GGG - chr1_3:3882580-3882599 None:intergenic 55.0%
CAGGGCGTGAAAGGGGATAA+GGG - chr1_3:3882581-3882600 None:intergenic 55.0%
TCAGGGCGTGAAAGGGGATA+AGG - chr1_3:3882582-3882601 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3882275 3884347 3882275 ID=Msa0097980;Name=Msa0097980
chr1_3 mRNA 3882275 3884347 3882275 ID=Msa0097980-mRNA-1;Parent=Msa0097980;Name=Msa0097980-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|0.83|0.4|0.16|6|0|252
chr1_3 exon 3882275 3882286 3882275 ID=Msa0097980-mRNA-1:exon:1227;Parent=Msa0097980-mRNA-1
chr1_3 exon 3882295 3882543 3882295 ID=Msa0097980-mRNA-1:exon:1228;Parent=Msa0097980-mRNA-1
chr1_3 exon 3882622 3882840 3882622 ID=Msa0097980-mRNA-1:exon:1229;Parent=Msa0097980-mRNA-1
chr1_3 exon 3883280 3883334 3883280 ID=Msa0097980-mRNA-1:exon:1230;Parent=Msa0097980-mRNA-1
chr1_3 exon 3883344 3883555 3883344 ID=Msa0097980-mRNA-1:exon:1231;Parent=Msa0097980-mRNA-1
chr1_3 exon 3884336 3884347 3884336 ID=Msa0097980-mRNA-1:exon:1232;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3882275 3882286 3882275 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3882295 3882543 3882295 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3882622 3882840 3882622 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3883280 3883334 3883280 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3883344 3883555 3883344 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
chr1_3 CDS 3884336 3884347 3884336 ID=Msa0097980-mRNA-1:cds;Parent=Msa0097980-mRNA-1
Gene Sequence

>Msa0097980

ATGCGATTCGGATCGCCAAAACAAAAAGTTATCAAAGAATCCAATCTTCGTGGGTGTCATGAAACGGGAGCAAGCGAAAGATCGAAGTATCGAGTTCTTTCGGAAGTACAAAACCTGAACAGAATGATAAATGGAGTAGTTACTTGTGATACTGTGAGGAATCCTAATGAAAGTAAGAATGGCATTCTTTTGCAGCAATGCCACTATGGTGAAATATCACAGGCTGCTTCAACATCTGGAGTATATGGTCATCAAAAGCAAAGTTTCAATCTCTTGTCCTTGTCAACTGGAAGTTATGGATTAAAGGTCGACAACAATAATTATAATAAAGTTCGAAGTAGGTTGGAACCGTCGTCAAATTTGCATGTACCTTATTTTCAGTCAATATCACAGCAGCAAAGGGTAATGCCAATTCCTACGCATCAAAGTCGTTACGCCTCGACAGTTTACCTTGATCATCTGACTGTTGTAGGACCACAGCTTCAGTTGCAACAACCTCGTTATTATGGTAGCCAATTATATGGAACTCAATATGTCTCAAATAAACAAGAGCACCAAAAATTGTGGGGGATGCAACAAGCAGCTCAAGCTAGGTCATCTGTAAATTGCAATATTACGTGGACCCAGAATCCTAATTGGCAAAATGGAAGAAATGACTATTCTGCAATGGGTCCATGTGCCCCCCAAATCATCTTTCCTCATACCCCTACATCACAAGAAATAATTGGATCCAAGATTACTTCAATCTTCACCCGCTAG

Protein sequence

>Msa0097980

MRFGSPKQKVIKESNLRGCHETGASERSKYRVLSEVQNLNRMINGVVTCDTVRNPNESKNGILLQQCHYGEISQAASTSGVYGHQKQSFNLLSLSTGSYGLKVDNNNYNKVRSRLEPSSNLHVPYFQSISQQQRVMPIPTHQSRYASTVYLDHLTVVGPQLQLQQPRYYGSQLYGTQYVSNKQEHQKLWGMQQAAQARSSVNCNITWTQNPNWQNGRNDYSAMGPCAPQIIFPHTPTSQEIIGSKITSIFTR*