Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163780 | AEX20344.1 | 99.770 | 434 | 1 | 0 | 1 | 434 | 1 | 434 | 0.0 | 877 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163780 | sp|Q40977|MDAR_PEA | 89.767 | 430 | 44 | 0 | 4 | 433 | 3 | 432 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163780 | H2EIY4 | 99.770 | 434 | 1 | 0 | 1 | 434 | 1 | 434 | 0.0 | 877 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038630 | Msa0163780 | 0.803166 | 3.969149e-49 | -8.615850e-47 |
| Msa0043730 | Msa0163780 | 0.807222 | 5.615290e-50 | -8.615850e-47 |
| Msa0050730 | Msa0163780 | 0.801734 | 7.831359e-49 | -8.615850e-47 |
| Msa0052030 | Msa0163780 | 0.807017 | 6.206345e-50 | -8.615850e-47 |
| Msa0072170 | Msa0163780 | 0.826792 | 2.233481e-54 | -8.615850e-47 |
| Msa0085720 | Msa0163780 | 0.822206 | 2.680838e-53 | -8.615850e-47 |
| Msa0089360 | Msa0163780 | 0.820986 | 5.132873e-53 | -8.615850e-47 |
| Msa0102120 | Msa0163780 | 0.816757 | 4.691274e-52 | -8.615850e-47 |
| Msa0120340 | Msa0163780 | 0.816977 | 4.187274e-52 | -8.615850e-47 |
| Msa0120540 | Msa0163780 | 0.837291 | 5.669306e-57 | -8.615850e-47 |
| Msa0124550 | Msa0163780 | 0.816866 | 4.433656e-52 | -8.615850e-47 |
| Msa0130520 | Msa0163780 | 0.816930 | 4.288877e-52 | -8.615850e-47 |
| Msa0163780 | Msa0233610 | 0.805492 | 1.300534e-49 | -8.615850e-47 |
| Msa0163780 | Msa0266210 | 0.846165 | 2.578443e-59 | -8.615850e-47 |
| Msa0163780 | Msa0287670 | 0.845327 | 4.353336e-59 | -8.615850e-47 |
| Msa0163780 | Msa0344870 | 0.803501 | 3.383068e-49 | -8.615850e-47 |
| Msa0163780 | Msa0351810 | 0.821243 | 4.478542e-53 | -8.615850e-47 |
| Msa0163780 | Msa0365490 | 0.814501 | 1.491866e-51 | -8.615850e-47 |
| Msa0163780 | Msa0389810 | 0.815877 | 7.382370e-52 | -8.615850e-47 |
| Msa0163780 | Msa0420820 | 0.818297 | 2.109841e-52 | -8.615850e-47 |
| Msa0163780 | Msa0430870 | 0.807934 | 3.965612e-50 | -8.615850e-47 |
| Msa0163780 | Msa0431670 | 0.811082 | 8.365551e-51 | -8.615850e-47 |
| Msa0163780 | Msa0444090 | 0.808755 | 2.650391e-50 | -8.615850e-47 |
| Msa0163780 | Msa0458440 | 0.821046 | 4.971331e-53 | -8.615850e-47 |
| Msa0163780 | Msa0464900 | 0.817297 | 3.547850e-52 | -8.615850e-47 |
| Msa0163780 | Msa0468130 | 0.813697 | 2.244457e-51 | -8.615850e-47 |
| Msa0163780 | Msa0491520 | 0.816429 | 5.554865e-52 | -8.615850e-47 |
| Msa0163780 | Msa0530290 | 0.800091 | 1.695336e-48 | -8.615850e-47 |
| Msa0163780 | Msa0530650 | 0.815702 | 8.075751e-52 | -8.615850e-47 |
| Msa0163780 | Msa0587190 | 0.819899 | 9.112255e-53 | -8.615850e-47 |
| Msa0163780 | Msa0599580 | 0.812020 | 5.231002e-51 | -8.615850e-47 |
| Msa0163780 | Msa0626990 | 0.808919 | 2.445028e-50 | -8.615850e-47 |
| Msa0163780 | Msa0627350 | 0.817182 | 3.764495e-52 | -8.615850e-47 |
| Msa0163780 | Msa0654620 | 0.809462 | 1.870043e-50 | -8.615850e-47 |
| Msa0163780 | Msa0679550 | 0.828666 | 7.917597e-55 | -8.615850e-47 |
| Msa0163780 | Msa0715110 | 0.804466 | 2.131321e-49 | -8.615850e-47 |
| Msa0163780 | Msa0724560 | 0.844783 | 6.103212e-59 | -8.615850e-47 |
| Msa0163780 | Msa0731180 | 0.808517 | 2.979041e-50 | -8.615850e-47 |
| Msa0163780 | Msa0757050 | 0.820900 | 5.373056e-53 | -8.615850e-47 |
| Msa0163780 | Msa0758580 | 0.805355 | 1.389171e-49 | -8.615850e-47 |
| Msa0163780 | Msa0792090 | 0.805454 | 1.324478e-49 | -8.615850e-47 |
| Msa0163780 | Msa0794320 | 0.805794 | 1.123775e-49 | -8.615850e-47 |
| Msa0163780 | Msa0798030 | 0.815399 | 9.430335e-52 | -8.615850e-47 |
| Msa0163780 | Msa0827470 | 0.839171 | 1.858317e-57 | -8.615850e-47 |
| Msa0163780 | Msa0845070 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0163780 | Msa0848900 | 0.840878 | 6.669862e-58 | -8.615850e-47 |
| Msa0163780 | Msa0869120 | 0.821063 | 4.927462e-53 | -8.615850e-47 |
| Msa0163780 | Msa0908170 | 0.811683 | 6.193122e-51 | -8.615850e-47 |
| Msa0163780 | Msa0947800 | 0.804327 | 2.278336e-49 | -8.615850e-47 |
| Msa0163780 | Msa0952020 | 0.810415 | 1.165798e-50 | -8.615850e-47 |
| Msa0163780 | Msa0958920 | 0.828040 | 1.121232e-54 | -8.615850e-47 |
| Msa0163780 | Msa0960160 | 0.801268 | 9.754093e-49 | -8.615850e-47 |
| Msa0163780 | Msa0982270 | 0.813087 | 3.056884e-51 | -8.615850e-47 |
| Msa0163780 | Msa0993530 | 0.808361 | 3.216397e-50 | -8.615850e-47 |
| Msa0163780 | Msa1002480 | 0.806570 | 7.716734e-50 | -8.615850e-47 |
| Msa0163780 | Msa1005410 | 0.806351 | 8.580931e-50 | -8.615850e-47 |
| Msa0163780 | Msa1032440 | 0.850395 | 1.745445e-60 | -8.615850e-47 |
| Msa0163780 | Msa1039880 | 0.813652 | 2.296656e-51 | -8.615850e-47 |
| Msa0163780 | Msa1091830 | 0.814488 | 1.501594e-51 | -8.615850e-47 |
| Msa0163780 | Msa1092090 | 0.849360 | 3.399234e-60 | -8.615850e-47 |
| Msa0163780 | Msa1109820 | 0.834516 | 2.864743e-56 | -8.615850e-47 |
| Msa0163780 | Msa1118110 | 0.835339 | 1.777905e-56 | -8.615850e-47 |
| Msa0163780 | Msa1174310 | 0.812390 | 4.343048e-51 | -8.615850e-47 |
| Msa0163780 | Msa1229850 | 0.824932 | 6.174774e-54 | -8.615850e-47 |
| Msa0163780 | Msa1235400 | 0.831481 | 1.629168e-55 | -8.615850e-47 |
| Msa0163780 | Msa1241570 | 0.810842 | 9.426165e-51 | -8.615850e-47 |
| Msa0163780 | Msa1263290 | -0.800468 | 1.421057e-48 | -8.615850e-47 |
| Msa0163780 | Msa1267840 | 0.809992 | 1.438323e-50 | -8.615850e-47 |
| Msa0163780 | Msa1276440 | 0.816763 | 4.675409e-52 | -8.615850e-47 |
| Msa0163780 | Msa1306750 | 0.815012 | 1.149454e-51 | -8.615850e-47 |
| Msa0163780 | Msa1307740 | 0.817115 | 3.897932e-52 | -8.615850e-47 |
| Msa0163780 | Msa1314770 | 0.824545 | 7.616610e-54 | -8.615850e-47 |
| Msa0163780 | Msa1322190 | 0.803783 | 2.956113e-49 | -8.615850e-47 |
| Msa0163780 | Msa1338250 | 0.801956 | 7.048288e-49 | -8.615850e-47 |
| Msa0163780 | Msa1350690 | 0.848026 | 7.965677e-60 | -8.615850e-47 |
| Msa0163780 | Msa1360280 | 0.800326 | 1.519016e-48 | -8.615850e-47 |
| Msa0163780 | Msa1373350 | 0.803109 | 4.077768e-49 | -8.615850e-47 |
| Msa0163780 | Msa1431060 | 0.802631 | 5.120149e-49 | -8.615850e-47 |
| Msa0163780 | Msa1451150 | 0.831791 | 1.366483e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163780 | MtrunA17_Chr1g0179021 | 98.157 | 434 | 8 | 0 | 1 | 434 | 1 | 434 | 0.0 | 865 |
| Msa0163780 | MtrunA17_Chr7g0228211 | 55.374 | 428 | 186 | 3 | 4 | 431 | 3 | 425 | 1.43e-172 | 492 |
| Msa0163780 | MtrunA17_Chr8g0387461 | 46.028 | 428 | 206 | 8 | 2 | 417 | 56 | 470 | 1.66e-118 | 355 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0163780 | AT3G52880.1 | 78.291 | 433 | 94 | 0 | 1 | 433 | 1 | 433 | 0.0 | 689 |
| Msa0163780 | AT3G52880.2 | 72.747 | 466 | 95 | 1 | 1 | 434 | 1 | 466 | 0.0 | 672 |
| Msa0163780 | AT5G03630.1 | 74.651 | 430 | 109 | 0 | 3 | 432 | 4 | 433 | 0.0 | 650 |
| Msa0163780 | AT3G09940.1 | 65.820 | 433 | 147 | 1 | 3 | 434 | 4 | 436 | 0.0 | 570 |
| Msa0163780 | AT3G09940.2 | 65.127 | 433 | 142 | 2 | 3 | 434 | 4 | 428 | 0.0 | 558 |
| Msa0163780 | AT3G27820.1 | 55.012 | 429 | 186 | 4 | 4 | 431 | 3 | 425 | 1.42e-158 | 457 |
| Msa0163780 | AT1G63940.2 | 45.902 | 427 | 208 | 7 | 1 | 417 | 56 | 469 | 7.81e-123 | 366 |
| Msa0163780 | AT1G63940.1 | 45.902 | 427 | 208 | 7 | 1 | 417 | 49 | 462 | 1.01e-122 | 365 |
| Msa0163780 | AT1G63940.4 | 44.965 | 427 | 208 | 7 | 1 | 417 | 49 | 458 | 1.95e-118 | 354 |
| Msa0163780 | AT1G63940.3 | 47.312 | 372 | 178 | 6 | 1 | 362 | 49 | 412 | 1.35e-108 | 327 |
Find 138 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTATTATATTGGATTT+TGG | 0.135986 | 1_4:+42107985 | None:intergenic |
| TTTACTCTAGGTTATATCTT+AGG | 0.140705 | 1_4:-42104246 | Msa0163780:three_prime_UTR |
| GCATCATCAAAGCCTAATTT+TGG | 0.178444 | 1_4:-42104492 | Msa0163780:CDS |
| GCAGCTCCTGCTAGACTTCC+TGG | 0.182558 | 1_4:-42106260 | Msa0163780:intron |
| AGATCCATTCATTATTATAT+TGG | 0.227260 | 1_4:+42107978 | None:intergenic |
| ATCCAGTATGTTCCAAAATT+AGG | 0.241603 | 1_4:+42104480 | None:intergenic |
| AAAATATCTTTAAAATTTAC+TGG | 0.242138 | 1_4:+42104323 | None:intergenic |
| GAAGTTATATACCGCTTCTT+TGG | 0.253487 | 1_4:+42107350 | None:intergenic |
| ATTAAAGACGGGAAAGTTAT+TGG | 0.257644 | 1_4:-42104459 | Msa0163780:CDS |
| CACTTACTGCACCAAGGTTC+TGG | 0.262415 | 1_4:+42105581 | None:intergenic |
| TGAGGGCTATTATGCAAATA+AGG | 0.262814 | 1_4:-42105429 | Msa0163780:CDS |
| CAAACTTACACTCCGGAAAA+AGG | 0.272710 | 1_4:+42106545 | None:intergenic |
| GTTGGTGACACAGTGCTATT+TGG | 0.278134 | 1_4:-42104528 | Msa0163780:CDS |
| CCTTTCTCACTGTACCATTC+TGG | 0.283457 | 1_4:+42106197 | None:intergenic |
| AATGAAACTGGATTAGTTAT+AGG | 0.307486 | 1_4:+42107953 | None:intergenic |
| TCCTGCCTCTGCTGCAATGA+TGG | 0.311126 | 1_4:+42104632 | None:intergenic |
| CTTCAACCTGCCCTTTGAAT+AGG | 0.313300 | 1_4:+42105174 | None:intergenic |
| GTGACAGCAATAAATGAATA+TGG | 0.322962 | 1_4:-42108113 | Msa0163780:intron |
| ATGGGAAAGCTGTGGTTGTT+GGG | 0.325418 | 1_4:-42105673 | Msa0163780:CDS |
| TTCAACCTGCCCTTTGAATA+GGG | 0.331938 | 1_4:+42105175 | None:intergenic |
| AAATGAAATGAAAATGAAAC+TGG | 0.335066 | 1_4:+42107941 | None:intergenic |
| GTTATAAGGTTGACCGATTT+CGG | 0.348452 | 1_4:-42105785 | Msa0163780:CDS |
| TTACTCTAGGTTATATCTTA+GGG | 0.361840 | 1_4:-42104245 | Msa0163780:three_prime_UTR |
| AGGAGTTCCGCCCTCCAAAA+AGG | 0.369207 | 1_4:+42104434 | None:intergenic |
| GCAATAGCTTTGTTCTCATC+AGG | 0.370142 | 1_4:+42104414 | None:intergenic |
| AGCAAGGGAGTTTGTCAAAC+AGG | 0.370685 | 1_4:-42107403 | Msa0163780:CDS |
| TACCTCTCCATCGGAATTAG+AGG | 0.382642 | 1_4:+42105367 | None:intergenic |
| TGCACAGAATATATCTGTAT+TGG | 0.382908 | 1_4:-42104275 | Msa0163780:three_prime_UTR |
| GATATTGTTGTTGTTGGTGT+TGG | 0.391197 | 1_4:-42105215 | Msa0163780:CDS |
| GATTGATGTGAGAAGAAAAT+CGG | 0.396431 | 1_4:+42107886 | None:intergenic |
| CCCGCTCATTTGATCTGTCT+TGG | 0.402893 | 1_4:-42104569 | Msa0163780:CDS |
| AATGGGAAAGCTGTGGTTGT+TGG | 0.405868 | 1_4:-42105674 | Msa0163780:CDS |
| AGCTCCTTCTACACCGAAAT+CGG | 0.406909 | 1_4:+42105772 | None:intergenic |
| GATTGCCTCGTACAATTTGT+CGG | 0.408450 | 1_4:+42105709 | None:intergenic |
| TTCCATACCTGTGTTGGAAG+TGG | 0.409257 | 1_4:-42106236 | Msa0163780:CDS |
| GGGAGTTAAGCCTGGGGAGC+TGG | 0.410028 | 1_4:-42107382 | Msa0163780:CDS |
| TTGACCGATTTCGGTGTAGA+AGG | 0.410797 | 1_4:-42105776 | Msa0163780:CDS |
| GAGGGCTATTATGCAAATAA+GGG | 0.411009 | 1_4:-42105428 | Msa0163780:CDS |
| AATGAGCGGGAATAGAAGTA+TGG | 0.414692 | 1_4:+42104582 | None:intergenic |
| TTGTGAGGGACAAATTGCTT+GGG | 0.423085 | 1_4:-42104301 | Msa0163780:three_prime_UTR |
| CAGCTCCTGCTAGACTTCCT+GGG | 0.431228 | 1_4:-42106259 | Msa0163780:CDS |
| TCCATACCTGTGTTGGAAGT+GGG | 0.433327 | 1_4:-42106235 | Msa0163780:CDS |
| AACATTCAAATACCAGACTT+TGG | 0.436365 | 1_4:-42105923 | Msa0163780:CDS |
| GTCAAACAGGGAGTTAAGCC+TGG | 0.439364 | 1_4:-42107390 | Msa0163780:CDS |
| GATATGATTGCCAGCTCCCC+AGG | 0.439711 | 1_4:+42107372 | None:intergenic |
| CTTAGAGCAGGACGTTCATA+AGG | 0.442351 | 1_4:+42106577 | None:intergenic |
| TGCTCGCAAATCAGCTGAGC+AGG | 0.448272 | 1_4:-42104913 | Msa0163780:CDS |
| AAATTAGGCTTTGATGATGC+AGG | 0.450521 | 1_4:+42104495 | None:intergenic |
| CAGACTTTGGTTATTGCAAC+GGG | 0.454674 | 1_4:-42105910 | Msa0163780:CDS |
| ATGGAAAGTGAGTGCGGTGG+TGG | 0.458940 | 1_4:-42108094 | Msa0163780:five_prime_UTR |
| ACTAAAGGACGGAAGGGTAC+TGG | 0.464010 | 1_4:-42105243 | Msa0163780:CDS |
| CTCAAATATCCCTATTCAAA+GGG | 0.465069 | 1_4:-42105184 | Msa0163780:CDS |
| ATTAAAGGAACTGTTGCTAC+TGG | 0.465914 | 1_4:-42105395 | Msa0163780:CDS |
| AATATAATAATGAATGGATC+TGG | 0.469079 | 1_4:-42107976 | Msa0163780:five_prime_UTR |
| TTTGTGAGGGACAAATTGCT+TGG | 0.469480 | 1_4:-42104302 | Msa0163780:three_prime_UTR |
| ACAGTTTGTGTGAAAGGAAT+CGG | 0.470692 | 1_4:+42108029 | None:intergenic |
| AGAGGAGAAGGGTGGAATCA+AGG | 0.470693 | 1_4:-42105153 | Msa0163780:intron |
| ATAAAGAAAACGACTTTGAA+TGG | 0.473664 | 1_4:-42108182 | None:intergenic |
| ACCTCATTGTACAATTTCAA+AGG | 0.474444 | 1_4:+42104960 | None:intergenic |
| GCAATCAAAGGAAAGAAGAA+TGG | 0.475038 | 1_4:-42105692 | Msa0163780:CDS |
| TGGGAAAGCTGTGGTTGTTG+GGG | 0.478224 | 1_4:-42105672 | Msa0163780:CDS |
| AAATCCAATATAATAATGAA+TGG | 0.480128 | 1_4:-42107982 | Msa0163780:five_prime_UTR |
| ATTGTTGTTGTTGGTGTTGG+AGG | 0.480315 | 1_4:-42105212 | Msa0163780:CDS |
| GAAGCAGATATTGTTGTTGT+TGG | 0.483049 | 1_4:-42105221 | Msa0163780:CDS |
| AAATCTCTGACTAGTGCAAA+AGG | 0.484247 | 1_4:-42105949 | Msa0163780:CDS |
| ACTTACTGCACCAAGGTTCT+GGG | 0.485499 | 1_4:+42105582 | None:intergenic |
| TGCGGTGGTGGAAGCAATAA+CGG | 0.486568 | 1_4:-42108082 | Msa0163780:five_prime_UTR |
| GATCTGTCTTGGCAATTCTA+CGG | 0.487729 | 1_4:-42104558 | Msa0163780:CDS |
| CAATCAAAGGAAAGAAGAAT+GGG | 0.494313 | 1_4:-42105691 | Msa0163780:CDS |
| CCTCATTGTACAATTTCAAA+GGG | 0.496085 | 1_4:+42104961 | None:intergenic |
| ATGTATACAGTTTGTGTGAA+AGG | 0.496466 | 1_4:+42108023 | None:intergenic |
| ATCAGCTGAGCAGGCTGCGA+AGG | 0.503643 | 1_4:-42104904 | Msa0163780:intron |
| CCCCACTTCCAACACAGGTA+TGG | 0.504218 | 1_4:+42106234 | None:intergenic |
| CCTGGGTTCCATACCTGTGT+TGG | 0.504798 | 1_4:-42106242 | Msa0163780:CDS |
| CCTCAAATATCCCTATTCAA+AGG | 0.504920 | 1_4:-42105185 | Msa0163780:CDS |
| GCCATCATTGCAGCAGAGGC+AGG | 0.506274 | 1_4:-42104633 | Msa0163780:CDS |
| TGATTCACATCCTTCACTGC+AGG | 0.508882 | 1_4:+42104372 | None:intergenic |
| AGGGCAGGTTGAAGAGGAGA+AGG | 0.510981 | 1_4:-42105165 | Msa0163780:CDS |
| CCGTTGCAATAACCAAAGTC+TGG | 0.512143 | 1_4:+42105911 | None:intergenic |
| CAGGTTGAAGAGGAGAAGGG+TGG | 0.514261 | 1_4:-42105161 | Msa0163780:CDS |
| TTCAAGTACATCATCGTTGG+TGG | 0.514305 | 1_4:-42107840 | Msa0163780:CDS |
| CCCTTTGAAATTGTACAATG+AGG | 0.515845 | 1_4:-42104961 | Msa0163780:CDS |
| TGAAATAGCTGCGTTCTATG+AGG | 0.516032 | 1_4:-42105447 | Msa0163780:CDS |
| CCTTTGAATAGGGATATTTG+AGG | 0.518462 | 1_4:+42105185 | None:intergenic |
| CCAGAATGGTACAGTGAGAA+AGG | 0.519211 | 1_4:-42106197 | Msa0163780:intron |
| CCAGACTTTGGTTATTGCAA+CGG | 0.522695 | 1_4:-42105911 | Msa0163780:CDS |
| AAGTACATCATCGTTGGTGG+TGG | 0.527872 | 1_4:-42107837 | Msa0163780:CDS |
| CCATACCTGTGTTGGAAGTG+GGG | 0.529148 | 1_4:-42106234 | Msa0163780:CDS |
| AATATCCCTATTCAAAGGGC+AGG | 0.530083 | 1_4:-42105180 | Msa0163780:CDS |
| AGGTAAGCCTTGCTTAGAGC+AGG | 0.532956 | 1_4:+42106565 | None:intergenic |
| TCAAACAGGGAGTTAAGCCT+GGG | 0.533956 | 1_4:-42107389 | Msa0163780:CDS |
| GGAACATACTGGATTAAAGA+CGG | 0.545200 | 1_4:-42104471 | Msa0163780:CDS |
| GGTAAAAGAAGTCAAACTAA+AGG | 0.545234 | 1_4:-42105258 | Msa0163780:CDS |
| TGGAACCCAGGAAGTCTAGC+AGG | 0.547573 | 1_4:+42106254 | None:intergenic |
| GAACATACTGGATTAAAGAC+GGG | 0.548378 | 1_4:-42104470 | Msa0163780:CDS |
| AAGTCAAACTAAAGGACGGA+AGG | 0.553804 | 1_4:-42105250 | Msa0163780:CDS |
| GCCAAGACAGATCAAATGAG+CGG | 0.563154 | 1_4:+42104568 | None:intergenic |
| AAGAGCATTGCCTGCAGTGA+AGG | 0.564265 | 1_4:-42104382 | Msa0163780:CDS |
| GAAATAGCTGCGTTCTATGA+GGG | 0.564269 | 1_4:-42105446 | Msa0163780:CDS |
| GTTTCCAATGTATATGCTGT+TGG | 0.565674 | 1_4:-42104999 | Msa0163780:CDS |
| TCATTCAAGTACATCATCGT+TGG | 0.568162 | 1_4:-42107843 | Msa0163780:CDS |
| CCAAGACAGATCAAATGAGC+GGG | 0.570191 | 1_4:+42104569 | None:intergenic |
| GTGAATCAACTTGCAAAGGA+AGG | 0.570354 | 1_4:-42104357 | Msa0163780:CDS |
| GGATGTGAATCAACTTGCAA+AGG | 0.570956 | 1_4:-42104361 | Msa0163780:CDS |
| ATTCAAAGGGCAGGTTGAAG+AGG | 0.578439 | 1_4:-42105171 | Msa0163780:CDS |
| GAGAAAGATTGCTTCCAGAA+TGG | 0.579572 | 1_4:-42106211 | Msa0163780:CDS |
| GCAGGCCATCATTGCAGCAG+AGG | 0.583036 | 1_4:-42104637 | Msa0163780:intron |
| AAATTGTACGAGGCAATCAA+AGG | 0.584541 | 1_4:-42105704 | Msa0163780:CDS |
| GGATTCACCTCTAATTCCGA+TGG | 0.584598 | 1_4:-42105374 | Msa0163780:CDS |
| GGGAAAGCTGTGGTTGTTGG+GGG | 0.584691 | 1_4:-42105671 | Msa0163780:CDS |
| AATTGTAGGGTTATGCAGCA+AGG | 0.585751 | 1_4:-42107419 | Msa0163780:intron |
| CAATTCTACGGCGACAACGT+TGG | 0.592292 | 1_4:-42104546 | Msa0163780:CDS |
| TGTGAGGGACAAATTGCTTG+GGG | 0.592627 | 1_4:-42104300 | Msa0163780:three_prime_UTR |
| ATTGTAGGGTTATGCAGCAA+GGG | 0.600524 | 1_4:-42107418 | Msa0163780:intron |
| ATGCGGCCATACCTCTCCAT+CGG | 0.604691 | 1_4:+42105358 | None:intergenic |
| CACCTCTAATTCCGATGGAG+AGG | 0.604818 | 1_4:-42105369 | Msa0163780:intron |
| AGGGCTATTATGCAAATAAG+GGG | 0.606173 | 1_4:-42105427 | Msa0163780:CDS |
| ATCGCCAACAGCATATACAT+TGG | 0.608592 | 1_4:+42104995 | None:intergenic |
| CAATAATATTGATGTTACCA+TGG | 0.614036 | 1_4:-42105609 | Msa0163780:CDS |
| CATACCTGTGTTGGAAGTGG+GGG | 0.614897 | 1_4:-42106233 | Msa0163780:CDS |
| CCATGGTCTACCCAGAACCT+TGG | 0.617370 | 1_4:-42105592 | Msa0163780:CDS |
| GGGCAGGTTGAAGAGGAGAA+GGG | 0.619159 | 1_4:-42105164 | Msa0163780:CDS |
| GGCAATCATATCCAAAGAAG+CGG | 0.620227 | 1_4:-42107361 | Msa0163780:intron |
| GCAAGGGAGTTTGTCAAACA+GGG | 0.623284 | 1_4:-42107402 | Msa0163780:CDS |
| CCAACACAGGTATGGAACCC+AGG | 0.626347 | 1_4:+42106242 | None:intergenic |
| CCAAGGTTCTGGGTAGACCA+TGG | 0.634221 | 1_4:+42105592 | None:intergenic |
| AAAGAAGTCAAACTAAAGGA+CGG | 0.634551 | 1_4:-42105254 | Msa0163780:CDS |
| TGAACGTCCTGCTCTAAGCA+AGG | 0.638367 | 1_4:-42106572 | Msa0163780:CDS |
| AGTCAAACTAAAGGACGGAA+GGG | 0.640917 | 1_4:-42105249 | Msa0163780:CDS |
| ATGAATATGGAAAGTGAGTG+CGG | 0.668077 | 1_4:-42108100 | Msa0163780:five_prime_UTR |
| AAAGAAGAATGGGAAAGCTG+TGG | 0.672130 | 1_4:-42105681 | Msa0163780:CDS |
| ATCTCTCGCGAACATCACAA+AGG | 0.697556 | 1_4:+42103820 | None:intergenic |
| TGAAAGGAATCGGACTGACG+TGG | 0.705306 | 1_4:+42108039 | None:intergenic |
| AATGTACACTTACTGCACCA+AGG | 0.710581 | 1_4:+42105575 | None:intergenic |
| GGGCTATTATGCAAATAAGG+GGG | 0.728792 | 1_4:-42105426 | Msa0163780:CDS |
| TGATGCCGACAAATTGTACG+AGG | 0.731621 | 1_4:-42105714 | Msa0163780:CDS |
| CAAACAGGGAGTTAAGCCTG+GGG | 0.760744 | 1_4:-42107388 | Msa0163780:CDS |
| AATATGGAAAGTGAGTGCGG+TGG | 0.815998 | 1_4:-42108097 | Msa0163780:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATGATTAAATTATTTTT+TGG | - | chr1_4:42104469-42104488 | Msa0163780:CDS | 10.0% |
| !! | TTTCATTTAATTCTTATATT+TGG | - | chr1_4:42104635-42104654 | Msa0163780:CDS | 10.0% |
| !!! | ATAAAATTTTAAACTTCATA+TGG | + | chr1_4:42104732-42104751 | None:intergenic | 10.0% |
| !! | ACAGAATTAAAATAAAATAA+GGG | + | chr1_4:42105784-42105803 | None:intergenic | 10.0% |
| !! | TACAGAATTAAAATAAAATA+AGG | + | chr1_4:42105785-42105804 | None:intergenic | 10.0% |
| !!! | TTTTAATTCTGTATTATATT+TGG | - | chr1_4:42105792-42105811 | Msa0163780:intron | 10.0% |
| !!! | CAAAAATATATTTTATTTGA+GGG | - | chr1_4:42106192-42106211 | Msa0163780:intron | 10.0% |
| !!! | AAAATATCTTTAAAATTTAC+TGG | + | chr1_4:42107616-42107635 | None:intergenic | 10.0% |
| !!! | ATCTTTTTCGTTTTATTTTA+GGG | + | chr1_4:42103787-42103806 | None:intergenic | 15.0% |
| !!! | AATCTTTTTCGTTTTATTTT+AGG | + | chr1_4:42103788-42103807 | None:intergenic | 15.0% |
| !!! | TTCATTATTATATTGGATTT+TGG | + | chr1_4:42103954-42103973 | None:intergenic | 15.0% |
| !! | AAATCCAATATAATAATGAA+TGG | - | chr1_4:42103954-42103973 | Msa0163780:intron | 15.0% |
| !! | AATGAAAAAAAAAACAAAAG+TGG | + | chr1_4:42104622-42104641 | None:intergenic | 15.0% |
| !!! | ATTTGGTTATACTTTTTTAA+TGG | - | chr1_4:42104652-42104671 | Msa0163780:intron | 15.0% |
| !!! | TTTTGAATTATATTTAGTGA+AGG | - | chr1_4:42105542-42105561 | Msa0163780:intron | 15.0% |
| !! | AGAATTAAAATAAAATAAGG+GGG | + | chr1_4:42105782-42105801 | None:intergenic | 15.0% |
| !! | CAGAATTAAAATAAAATAAG+GGG | + | chr1_4:42105783-42105802 | None:intergenic | 15.0% |
| !! | AGATAAGTAAATATAAGAAT+GGG | - | chr1_4:42105862-42105881 | Msa0163780:intron | 15.0% |
| !!! | CCTCAAATAAAATATATTTT+TGG | + | chr1_4:42106194-42106213 | None:intergenic | 15.0% |
| !!! | CCAAAAATATATTTTATTTG+AGG | - | chr1_4:42106191-42106210 | Msa0163780:intron | 15.0% |
| !!! | ATTTTAAAGATATTTTTGTG+AGG | - | chr1_4:42107620-42107639 | Msa0163780:intron | 15.0% |
| !!! | TTTTAAAGATATTTTTGTGA+GGG | - | chr1_4:42107621-42107640 | Msa0163780:intron | 15.0% |
| !!! | TCTTTTTCGTTTTATTTTAG+GGG | + | chr1_4:42103786-42103805 | None:intergenic | 20.0% |
| !!! | AAAACGAAAAAGATTTTGAT+TGG | - | chr1_4:42103793-42103812 | Msa0163780:three_prime_UTR | 20.0% |
| !!! | ATTATTATATTGGATTTTGG+AGG | + | chr1_4:42103951-42103970 | None:intergenic | 20.0% |
| !! | AGATCCATTCATTATTATAT+TGG | + | chr1_4:42103961-42103980 | None:intergenic | 20.0% |
| !! | AATATAATAATGAATGGATC+TGG | - | chr1_4:42103960-42103979 | Msa0163780:intron | 20.0% |
| !! | AAATGAAATGAAAATGAAAC+TGG | + | chr1_4:42103998-42104017 | None:intergenic | 20.0% |
| !! | ATTGAAACAAGAATAAAGAT+TGG | + | chr1_4:42104151-42104170 | None:intergenic | 20.0% |
| !! | AAAAAATTCACAAGAATCTA+CGG | + | chr1_4:42104199-42104218 | None:intergenic | 20.0% |
| !! | TGTAACAATTCTATGTTAAA+AGG | - | chr1_4:42104244-42104263 | Msa0163780:three_prime_UTR | 20.0% |
| !! | GTAACAATTCTATGTTAAAA+GGG | - | chr1_4:42104245-42104264 | Msa0163780:three_prime_UTR | 20.0% |
| !!! | TTTTTTGGATTGAATAATTG+AGG | - | chr1_4:42104484-42104503 | Msa0163780:CDS | 20.0% |
| !! | TTTGTGAGTAAATATTCTAT+AGG | - | chr1_4:42104896-42104915 | Msa0163780:intron | 20.0% |
| !!! | GTAAAAATTCGAAATTTTTC+AGG | + | chr1_4:42105156-42105175 | None:intergenic | 20.0% |
| !! | TTATTAACGCATAATAGAAT+GGG | + | chr1_4:42105464-42105483 | None:intergenic | 20.0% |
| !! | TTTATTAACGCATAATAGAA+TGG | + | chr1_4:42105465-42105484 | None:intergenic | 20.0% |
| !! | AATTCTGTATTATATTTGGA+TGG | - | chr1_4:42105796-42105815 | Msa0163780:intron | 20.0% |
| !! | GAGATAAGTAAATATAAGAA+TGG | - | chr1_4:42105861-42105880 | Msa0163780:intron | 20.0% |
| !! | GATATTAGAAATGTTACATT+CGG | - | chr1_4:42106071-42106090 | Msa0163780:intron | 20.0% |
| !!! | TACTAATAATTTTGTTTTGC+AGG | - | chr1_4:42106129-42106148 | Msa0163780:intron | 20.0% |
| !!! | AAATATATTTTATTTGAGGG+AGG | - | chr1_4:42106195-42106214 | Msa0163780:intron | 20.0% |
| !! | AAGTTAAGCAAAATTTGATT+AGG | + | chr1_4:42106644-42106663 | None:intergenic | 20.0% |
| !! | AAAAATTAAACCTCAGTATT+TGG | + | chr1_4:42108079-42108098 | None:intergenic | 20.0% |
| !!! | AATGAAACTGGATTAGTTAT+AGG | + | chr1_4:42103986-42104005 | None:intergenic | 25.0% |
| ! | TCACATCAATCAATCAAAAA+TGG | - | chr1_4:42104062-42104081 | Msa0163780:intron | 25.0% |
| ! | ACAAGAATAAAGATTGGAAA+AGG | + | chr1_4:42104145-42104164 | None:intergenic | 25.0% |
| ! | ATGTTAAAAGGGATTAGAAT+CGG | - | chr1_4:42104256-42104275 | Msa0163780:three_prime_UTR | 25.0% |
| !! | AATTTTTCACAGTATTCACA+AGG | + | chr1_4:42104304-42104323 | None:intergenic | 25.0% |
| !!! | TTTGCTTTGCTTTGAATTTT+TGG | - | chr1_4:42104331-42104350 | Msa0163780:exon | 25.0% |
| !!! | GTATGACTTTTAAAGTAGAA+AGG | - | chr1_4:42104400-42104419 | Msa0163780:CDS | 25.0% |
| !!! | AGGTGTTTTTTGAAATTGTA+GGG | - | chr1_4:42104504-42104523 | Msa0163780:CDS | 25.0% |
| !!! | TACTTTTTTAATGGTGATAG+TGG | - | chr1_4:42104661-42104680 | Msa0163780:intron | 25.0% |
| !!! | ACTTTTTTAATGGTGATAGT+GGG | - | chr1_4:42104662-42104681 | Msa0163780:intron | 25.0% |
| ! | AGATACATATCATGAAATTC+AGG | + | chr1_4:42105068-42105087 | None:intergenic | 25.0% |
| !!! | GGACATATTTTTGCATTTTT+AGG | - | chr1_4:42105210-42105229 | Msa0163780:CDS | 25.0% |
| !! | ACGTGGTACAAAATTTTAAA+AGG | + | chr1_4:42105261-42105280 | None:intergenic | 25.0% |
| !! | ATTTTGTACCACGTATTTAT+TGG | - | chr1_4:42105267-42105286 | Msa0163780:intron | 25.0% |
| ! | TATTAACGCATAATAGAATG+GGG | + | chr1_4:42105463-42105482 | None:intergenic | 25.0% |
| !!! | ATGTGCTATTTAAACTTCAA+TGG | + | chr1_4:42105605-42105624 | None:intergenic | 25.0% |
| ! | ATCCAACTTAATGTTACAAT+TGG | - | chr1_4:42105647-42105666 | Msa0163780:CDS | 25.0% |
| ! | ATCCAATTGTAACATTAAGT+TGG | + | chr1_4:42105652-42105671 | None:intergenic | 25.0% |
| !! | ATGGTTTTCAGAATAACTAT+TGG | - | chr1_4:42105815-42105834 | Msa0163780:intron | 25.0% |
| ! | TAACATTTCTAATATCAGCA+AGG | + | chr1_4:42106067-42106086 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGCAGGTTATA+AGG | - | chr1_4:42106137-42106156 | Msa0163780:intron | 25.0% |
| ! | CAATAATATTGATGTTACCA+TGG | - | chr1_4:42106327-42106346 | Msa0163780:intron | 25.0% |
| !! | TATCAATGATACATTTGTTG+TGG | - | chr1_4:42106884-42106903 | Msa0163780:intron | 25.0% |
| ! | AACCAAAATGATTCAAAACT+GGG | + | chr1_4:42107145-42107164 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTTCCTTTCATGC+AGG | - | chr1_4:42107281-42107300 | Msa0163780:intron | 25.0% |
| ! | TTTACTCTAGGTTATATCTT+AGG | - | chr1_4:42107690-42107709 | Msa0163780:intron | 25.0% |
| ! | TTACTCTAGGTTATATCTTA+GGG | - | chr1_4:42107691-42107710 | Msa0163780:intron | 25.0% |
| !!! | TTGCAAGGAGTTTTATTATT+TGG | + | chr1_4:42107844-42107863 | None:intergenic | 25.0% |
| ! | AAAAACATCAAAGATTTCGA+TGG | + | chr1_4:42107963-42107982 | None:intergenic | 25.0% |
| ! | AAATGATATTTGTAGTGAGA+GGG | - | chr1_4:42107986-42108005 | Msa0163780:five_prime_UTR | 25.0% |
| GTGACAGCAATAAATGAATA+TGG | - | chr1_4:42103823-42103842 | Msa0163780:three_prime_UTR | 30.0% | |
| ATGTATACAGTTTGTGTGAA+AGG | + | chr1_4:42103916-42103935 | None:intergenic | 30.0% | |
| !! | TGGATTTTGGAGGTTATTTT+GGG | + | chr1_4:42103941-42103960 | None:intergenic | 30.0% |
| !! | TTGGATTTTGGAGGTTATTT+TGG | + | chr1_4:42103942-42103961 | None:intergenic | 30.0% |
| GATTGATGTGAGAAGAAAAT+CGG | + | chr1_4:42104053-42104072 | None:intergenic | 30.0% | |
| CATCAATCAATCAAAAATGG+CGG | - | chr1_4:42104065-42104084 | Msa0163780:intron | 30.0% | |
| GTAGAATTATGAAGATCGAT+CGG | + | chr1_4:42104177-42104196 | None:intergenic | 30.0% | |
| ! | CGTAAAACTTTTGACACTAT+TGG | - | chr1_4:42104378-42104397 | Msa0163780:CDS | 30.0% |
| !!! | GAGGTGTTTTTTGAAATTGT+AGG | - | chr1_4:42104503-42104522 | Msa0163780:CDS | 30.0% |
| !!! | CTTTTTTAATGGTGATAGTG+GGG | - | chr1_4:42104663-42104682 | Msa0163780:intron | 30.0% |
| ATGAAATTCAGGAAATAGTG+TGG | + | chr1_4:42105057-42105076 | None:intergenic | 30.0% | |
| CAAAAATATGTCCATCACAA+GGG | + | chr1_4:42105203-42105222 | None:intergenic | 30.0% | |
| CACAAAGGTAAGATATGTAA+GGG | + | chr1_4:42105330-42105349 | None:intergenic | 30.0% | |
| ATAGAATGGGGGAAAATTAA+AGG | + | chr1_4:42105451-42105470 | None:intergenic | 30.0% | |
| ATTAACGCATAATAGAATGG+GGG | + | chr1_4:42105462-42105481 | None:intergenic | 30.0% | |
| TAGTGAAGGTTATGTTATCT+TGG | - | chr1_4:42105556-42105575 | Msa0163780:intron | 30.0% | |
| AGTGAAGGTTATGTTATCTT+GGG | - | chr1_4:42105557-42105576 | Msa0163780:intron | 30.0% | |
| GGATTATTGTGTCAAGTTAA+AGG | - | chr1_4:42105836-42105855 | Msa0163780:intron | 30.0% | |
| TAAATTGAACCAATGATTGC+AGG | - | chr1_4:42105915-42105934 | Msa0163780:CDS | 30.0% | |
| AAATTGAACCAATGATTGCA+GGG | - | chr1_4:42105916-42105935 | Msa0163780:CDS | 30.0% | |
| AACATTCAAATACCAGACTT+TGG | - | chr1_4:42106013-42106032 | Msa0163780:intron | 30.0% | |
| AGTAATTAGTATGCGCTAAA+AGG | + | chr1_4:42106113-42106132 | None:intergenic | 30.0% | |
| CAATCAAAGGAAAGAAGAAT+GGG | - | chr1_4:42106245-42106264 | Msa0163780:CDS | 30.0% | |
| ATTTCAGCAGTAAAAAGTCT+TGG | + | chr1_4:42106475-42106494 | None:intergenic | 30.0% | |
| GGTAAAAGAAGTCAAACTAA+AGG | - | chr1_4:42106678-42106697 | Msa0163780:intron | 30.0% | |
| AAAGAAGTCAAACTAAAGGA+CGG | - | chr1_4:42106682-42106701 | Msa0163780:intron | 30.0% | |
| CTCAAATATCCCTATTCAAA+GGG | - | chr1_4:42106752-42106771 | Msa0163780:intron | 30.0% | |
| !!! | GGAAACATTTGTTTTGAAGA+AGG | + | chr1_4:42106923-42106942 | None:intergenic | 30.0% |
| CCTCATTGTACAATTTCAAA+GGG | + | chr1_4:42106978-42106997 | None:intergenic | 30.0% | |
| ACCTCATTGTACAATTTCAA+AGG | + | chr1_4:42106979-42106998 | None:intergenic | 30.0% | |
| ! | TGGAGAAGCATAAATATGTA+GGG | + | chr1_4:42107068-42107087 | None:intergenic | 30.0% |
| ! | TTGGAGAAGCATAAATATGT+AGG | + | chr1_4:42107069-42107088 | None:intergenic | 30.0% |
| ! | ACATGTGTTTTGTGCATAAT+TGG | + | chr1_4:42107088-42107107 | None:intergenic | 30.0% |
| ! | AAACACATGTATCCTTTTTC+CGG | - | chr1_4:42107098-42107117 | Msa0163780:intron | 30.0% |
| GAACCAAAATGATTCAAAAC+TGG | + | chr1_4:42107146-42107165 | None:intergenic | 30.0% | |
| !!! | TTGAATCATTTTGGTTCCTT+AGG | - | chr1_4:42107149-42107168 | Msa0163780:intron | 30.0% |
| CTTAATAAGACACTTCCATA+TGG | + | chr1_4:42107222-42107241 | None:intergenic | 30.0% | |
| ATCCAGTATGTTCCAAAATT+AGG | + | chr1_4:42107459-42107478 | None:intergenic | 30.0% | |
| ATTAAAGACGGGAAAGTTAT+TGG | - | chr1_4:42107477-42107496 | Msa0163780:intron | 30.0% | |
| TGCACAGAATATATCTGTAT+TGG | - | chr1_4:42107661-42107680 | Msa0163780:intron | 30.0% | |
| !!! | TATTGGCTTCATTTTACTCT+AGG | - | chr1_4:42107678-42107697 | Msa0163780:intron | 30.0% |
| ! | CCAAAAAGATCTTATTTGCA+AGG | + | chr1_4:42107859-42107878 | None:intergenic | 30.0% |
| ! | CCTTGCAAATAAGATCTTTT+TGG | - | chr1_4:42107856-42107875 | Msa0163780:CDS | 30.0% |
| GAAATGATATTTGTAGTGAG+AGG | - | chr1_4:42107985-42108004 | Msa0163780:five_prime_UTR | 30.0% | |
| AATGATATTTGTAGTGAGAG+GGG | - | chr1_4:42107987-42108006 | Msa0163780:five_prime_UTR | 30.0% | |
| CAGATAACAAAACATGTGAT+TGG | - | chr1_4:42108021-42108040 | Msa0163780:five_prime_UTR | 30.0% | |
| GAAAAAAGAAGTAATTGACG+CGG | + | chr1_4:42108170-42108189 | None:intergenic | 30.0% | |
| ATGAATATGGAAAGTGAGTG+CGG | - | chr1_4:42103836-42103855 | Msa0163780:intron | 35.0% | |
| ACAGTTTGTGTGAAAGGAAT+CGG | + | chr1_4:42103910-42103929 | None:intergenic | 35.0% | |
| TCATTCAAGTACATCATCGT+TGG | - | chr1_4:42104093-42104112 | Msa0163780:three_prime_UTR | 35.0% | |
| GAAGTTATATACCGCTTCTT+TGG | + | chr1_4:42104589-42104608 | None:intergenic | 35.0% | |
| ! | AACATGTGCATGTTGTTTGA+AGG | - | chr1_4:42104690-42104709 | Msa0163780:intron | 35.0% |
| ! | ACATGTGCATGTTGTTTGAA+GGG | - | chr1_4:42104691-42104710 | Msa0163780:intron | 35.0% |
| GAGAAAAACACAAGAGGATA+AGG | + | chr1_4:42104989-42105008 | None:intergenic | 35.0% | |
| TTGATGGAGAAAAACACAAG+AGG | + | chr1_4:42104995-42105014 | None:intergenic | 35.0% | |
| !! | ACTTTCAACGTCTTGTTTGA+TGG | + | chr1_4:42105011-42105030 | None:intergenic | 35.0% |
| TAAATTTCTCGGGACGAATA+TGG | + | chr1_4:42105115-42105134 | None:intergenic | 35.0% | |
| TGTCCCATCACTAAATTTCT+CGG | + | chr1_4:42105126-42105145 | None:intergenic | 35.0% | |
| GCAAAAATATGTCCATCACA+AGG | + | chr1_4:42105204-42105223 | None:intergenic | 35.0% | |
| CAAAAAACCATAACTGCACA+AGG | + | chr1_4:42105298-42105317 | None:intergenic | 35.0% | |
| GCACAAAGGTAAGATATGTA+AGG | + | chr1_4:42105331-42105350 | None:intergenic | 35.0% | |
| TACATATCTTACCTTTGTGC+AGG | - | chr1_4:42105331-42105350 | Msa0163780:intron | 35.0% | |
| AGCATTACAAACTTACACTC+CGG | + | chr1_4:42105401-42105420 | None:intergenic | 35.0% | |
| GGAAAATTAAAGGAGGAAAG+GGG | + | chr1_4:42105441-42105460 | None:intergenic | 35.0% | |
| GGGAAAATTAAAGGAGGAAA+GGG | + | chr1_4:42105442-42105461 | None:intergenic | 35.0% | |
| TACAGTGAGAAAGGTGAATT+TGG | - | chr1_4:42105748-42105767 | Msa0163780:CDS | 35.0% | |
| AATTGAACCAATGATTGCAG+GGG | - | chr1_4:42105917-42105936 | Msa0163780:CDS | 35.0% | |
| AAATCTCTGACTAGTGCAAA+AGG | - | chr1_4:42105987-42106006 | Msa0163780:CDS | 35.0% | |
| ! | GTTATAAGGTTGACCGATTT+CGG | - | chr1_4:42106151-42106170 | Msa0163780:intron | 35.0% |
| AAATTGTACGAGGCAATCAA+AGG | - | chr1_4:42106232-42106251 | Msa0163780:CDS | 35.0% | |
| GCAATCAAAGGAAAGAAGAA+TGG | - | chr1_4:42106244-42106263 | Msa0163780:CDS | 35.0% | |
| TGAGGGCTATTATGCAAATA+AGG | - | chr1_4:42106507-42106526 | Msa0163780:intron | 35.0% | |
| GAGGGCTATTATGCAAATAA+GGG | - | chr1_4:42106508-42106527 | Msa0163780:intron | 35.0% | |
| AGGGCTATTATGCAAATAAG+GGG | - | chr1_4:42106509-42106528 | Msa0163780:intron | 35.0% | |
| AAGGGGGTCAATATCATTAA+AGG | - | chr1_4:42106526-42106545 | Msa0163780:intron | 35.0% | |
| ATTAAAGGAACTGTTGCTAC+TGG | - | chr1_4:42106541-42106560 | Msa0163780:intron | 35.0% | |
| TTAACTTTCATCCATCTGTC+AGG | - | chr1_4:42106657-42106676 | Msa0163780:intron | 35.0% | |
| ! | GAAGCAGATATTGTTGTTGT+TGG | - | chr1_4:42106715-42106734 | Msa0163780:intron | 35.0% |
| ! | GATATTGTTGTTGTTGGTGT+TGG | - | chr1_4:42106721-42106740 | Msa0163780:intron | 35.0% |
| CCTTTGAATAGGGATATTTG+AGG | + | chr1_4:42106754-42106773 | None:intergenic | 35.0% | |
| CCTCAAATATCCCTATTCAA+AGG | - | chr1_4:42106751-42106770 | Msa0163780:intron | 35.0% | |
| GTTTCCAATGTATATGCTGT+TGG | - | chr1_4:42106937-42106956 | Msa0163780:intron | 35.0% | |
| !! | CCCTTTGAAATTGTACAATG+AGG | - | chr1_4:42106975-42106994 | Msa0163780:intron | 35.0% |
| AATGATTCAAAACTGGGTGT+CGG | + | chr1_4:42107139-42107158 | None:intergenic | 35.0% | |
| !!! | CACCCAGTTTTGAATCATTT+TGG | - | chr1_4:42107140-42107159 | Msa0163780:intron | 35.0% |
| ! | ACATGCACAAACTTCTTTTC+TGG | - | chr1_4:42107192-42107211 | Msa0163780:intron | 35.0% |
| AATAAGACACTTCCATATGG+AGG | + | chr1_4:42107219-42107238 | None:intergenic | 35.0% | |
| !! | AAATTAGGCTTTGATGATGC+AGG | + | chr1_4:42107444-42107463 | None:intergenic | 35.0% |
| ! | GCATCATCAAAGCCTAATTT+TGG | - | chr1_4:42107444-42107463 | Msa0163780:intron | 35.0% |
| !!! | AGCCTAATTTTGGAACATAC+TGG | - | chr1_4:42107454-42107473 | Msa0163780:intron | 35.0% |
| GGAACATACTGGATTAAAGA+CGG | - | chr1_4:42107465-42107484 | Msa0163780:intron | 35.0% | |
| GAACATACTGGATTAAAGAC+GGG | - | chr1_4:42107466-42107485 | Msa0163780:intron | 35.0% | |
| !! | GAAAGTTATTGGTGCCTTTT+TGG | - | chr1_4:42107488-42107507 | Msa0163780:intron | 35.0% |
| ! | GCGTCAATGACTTCTTTTTA+TGG | - | chr1_4:42107911-42107930 | Msa0163780:five_prime_UTR | 35.0% |
| GAAATTAGTCGTAACTGGTA+GGG | + | chr1_4:42107941-42107960 | None:intergenic | 35.0% | |
| TTCAAGTACATCATCGTTGG+TGG | - | chr1_4:42104096-42104115 | Msa0163780:three_prime_UTR | 40.0% | |
| AATTGTAGGGTTATGCAGCA+AGG | - | chr1_4:42104517-42104536 | Msa0163780:CDS | 40.0% | |
| ATTGTAGGGTTATGCAGCAA+GGG | - | chr1_4:42104518-42104537 | Msa0163780:CDS | 40.0% | |
| GGCAATCATATCCAAAGAAG+CGG | - | chr1_4:42104575-42104594 | Msa0163780:CDS | 40.0% | |
| GTCCCGAGAAATTTAGTGAT+GGG | - | chr1_4:42105120-42105139 | Msa0163780:intron | 40.0% | |
| GTCCCATCACTAAATTTCTC+GGG | + | chr1_4:42105125-42105144 | None:intergenic | 40.0% | |
| CACAAGGGAATGATAGGTAA+GGG | + | chr1_4:42105188-42105207 | None:intergenic | 40.0% | |
| TCACAAGGGAATGATAGGTA+AGG | + | chr1_4:42105189-42105208 | None:intergenic | 40.0% | |
| TACCTATCATTCCCTTGTGA+TGG | - | chr1_4:42105189-42105208 | Msa0163780:CDS | 40.0% | |
| ! | AAGCAAGGCTTACCTTTTTC+CGG | - | chr1_4:42105379-42105398 | Msa0163780:CDS | 40.0% |
| CAAACTTACACTCCGGAAAA+AGG | + | chr1_4:42105394-42105413 | None:intergenic | 40.0% | |
| GGGGAAAATTAAAGGAGGAA+AGG | + | chr1_4:42105443-42105462 | None:intergenic | 40.0% | |
| GAATGGGGGAAAATTAAAGG+AGG | + | chr1_4:42105448-42105467 | None:intergenic | 40.0% | |
| GATATTCAGAGTGACAAGCA+AGG | + | chr1_4:42105630-42105649 | None:intergenic | 40.0% | |
| GAGAAAGATTGCTTCCAGAA+TGG | - | chr1_4:42105725-42105744 | Msa0163780:CDS | 40.0% | |
| ! | TAGTCAGAGATTTTGCAGCA+AGG | + | chr1_4:42105980-42105999 | None:intergenic | 40.0% |
| CCAGACTTTGGTTATTGCAA+CGG | - | chr1_4:42106025-42106044 | Msa0163780:intron | 40.0% | |
| CAGACTTTGGTTATTGCAAC+GGG | - | chr1_4:42106026-42106045 | Msa0163780:intron | 40.0% | |
| GATTGCCTCGTACAATTTGT+CGG | + | chr1_4:42106230-42106249 | None:intergenic | 40.0% | |
| AAAGAAGAATGGGAAAGCTG+TGG | - | chr1_4:42106255-42106274 | Msa0163780:CDS | 40.0% | |
| AATGTACACTTACTGCACCA+AGG | + | chr1_4:42106364-42106383 | None:intergenic | 40.0% | |
| TGAAATAGCTGCGTTCTATG+AGG | - | chr1_4:42106489-42106508 | Msa0163780:intron | 40.0% | |
| GAAATAGCTGCGTTCTATGA+GGG | - | chr1_4:42106490-42106509 | Msa0163780:intron | 40.0% | |
| GGGCTATTATGCAAATAAGG+GGG | - | chr1_4:42106510-42106529 | Msa0163780:intron | 40.0% | |
| ! | GACTTCTTTTACCTGACAGA+TGG | + | chr1_4:42106671-42106690 | None:intergenic | 40.0% |
| AAGTCAAACTAAAGGACGGA+AGG | - | chr1_4:42106686-42106705 | Msa0163780:intron | 40.0% | |
| AGTCAAACTAAAGGACGGAA+GGG | - | chr1_4:42106687-42106706 | Msa0163780:intron | 40.0% | |
| !! | ATTGTTGTTGTTGGTGTTGG+AGG | - | chr1_4:42106724-42106743 | Msa0163780:intron | 40.0% |
| AATATCCCTATTCAAAGGGC+AGG | - | chr1_4:42106756-42106775 | Msa0163780:intron | 40.0% | |
| TTCAACCTGCCCTTTGAATA+GGG | + | chr1_4:42106764-42106783 | None:intergenic | 40.0% | |
| GTTAGTGATACCATATCCAG+AGG | - | chr1_4:42106805-42106824 | Msa0163780:intron | 40.0% | |
| ATCGCCAACAGCATATACAT+TGG | + | chr1_4:42106944-42106963 | None:intergenic | 40.0% | |
| ATGATTCAAAACTGGGTGTC+GGG | + | chr1_4:42107138-42107157 | None:intergenic | 40.0% | |
| TGTTCTGCTATGTAGAAGGT+TGG | + | chr1_4:42107175-42107194 | None:intergenic | 40.0% | |
| TGCATGTTCTGCTATGTAGA+AGG | + | chr1_4:42107179-42107198 | None:intergenic | 40.0% | |
| !! | TTCTTTTCTGGTCCTCCATA+TGG | - | chr1_4:42107204-42107223 | Msa0163780:intron | 40.0% |
| TACCACAAAATGAACAGCAC+TGG | + | chr1_4:42107256-42107275 | None:intergenic | 40.0% | |
| AATGAGCGGGAATAGAAGTA+TGG | + | chr1_4:42107357-42107376 | None:intergenic | 40.0% | |
| GATCTGTCTTGGCAATTCTA+CGG | - | chr1_4:42107378-42107397 | Msa0163780:CDS | 40.0% | |
| !! | AGTTATTGGTGCCTTTTTGG+AGG | - | chr1_4:42107491-42107510 | Msa0163780:intron | 40.0% |
| !! | GTTATTGGTGCCTTTTTGGA+GGG | - | chr1_4:42107492-42107511 | Msa0163780:intron | 40.0% |
| !! | GCAATAGCTTTGTTCTCATC+AGG | + | chr1_4:42107525-42107544 | None:intergenic | 40.0% |
| GGATGTGAATCAACTTGCAA+AGG | - | chr1_4:42107575-42107594 | Msa0163780:intron | 40.0% | |
| GTGAATCAACTTGCAAAGGA+AGG | - | chr1_4:42107579-42107598 | Msa0163780:intron | 40.0% | |
| TTTGTGAGGGACAAATTGCT+TGG | - | chr1_4:42107634-42107653 | Msa0163780:intron | 40.0% | |
| TTGTGAGGGACAAATTGCTT+GGG | - | chr1_4:42107635-42107654 | Msa0163780:intron | 40.0% | |
| GGAAATTAGTCGTAACTGGT+AGG | + | chr1_4:42107942-42107961 | None:intergenic | 40.0% | |
| CGATGGAAATTAGTCGTAAC+TGG | + | chr1_4:42107946-42107965 | None:intergenic | 40.0% | |
| GTATTTGGCAGAAATCAGGA+GGG | + | chr1_4:42108064-42108083 | None:intergenic | 40.0% | |
| AGTATTTGGCAGAAATCAGG+AGG | + | chr1_4:42108065-42108084 | None:intergenic | 40.0% | |
| CTCAGTATTTGGCAGAAATC+AGG | + | chr1_4:42108068-42108087 | None:intergenic | 40.0% | |
| CTGATTTCTGCCAAATACTG+AGG | - | chr1_4:42108066-42108085 | Msa0163780:five_prime_UTR | 40.0% | |
| AATATGGAAAGTGAGTGCGG+TGG | - | chr1_4:42103839-42103858 | Msa0163780:intron | 45.0% | |
| ! | AAGTACATCATCGTTGGTGG+TGG | - | chr1_4:42104099-42104118 | Msa0163780:three_prime_UTR | 45.0% |
| AGCAAGGGAGTTTGTCAAAC+AGG | - | chr1_4:42104533-42104552 | Msa0163780:CDS | 45.0% | |
| GCAAGGGAGTTTGTCAAACA+GGG | - | chr1_4:42104534-42104553 | Msa0163780:CDS | 45.0% | |
| TCAAACAGGGAGTTAAGCCT+GGG | - | chr1_4:42104547-42104566 | Msa0163780:CDS | 45.0% | |
| CGTCCCGAGAAATTTAGTGA+TGG | - | chr1_4:42105119-42105138 | Msa0163780:intron | 45.0% | |
| GTCCATCACAAGGGAATGAT+AGG | + | chr1_4:42105194-42105213 | None:intergenic | 45.0% | |
| AGGCTCAGCCAATAAATACG+TGG | + | chr1_4:42105278-42105297 | None:intergenic | 45.0% | |
| ! | ATAAGGTGCTACCTGCACAA+AGG | + | chr1_4:42105345-42105364 | None:intergenic | 45.0% |
| CTTAGAGCAGGACGTTCATA+AGG | + | chr1_4:42105362-42105381 | None:intergenic | 45.0% | |
| TTCCATACCTGTGTTGGAAG+TGG | - | chr1_4:42105700-42105719 | Msa0163780:CDS | 45.0% | |
| TCCATACCTGTGTTGGAAGT+GGG | - | chr1_4:42105701-42105720 | Msa0163780:CDS | 45.0% | |
| CCTTTCTCACTGTACCATTC+TGG | + | chr1_4:42105742-42105761 | None:intergenic | 45.0% | |
| CCAGAATGGTACAGTGAGAA+AGG | - | chr1_4:42105739-42105758 | Msa0163780:CDS | 45.0% | |
| AACTGTACCCCTGCAATCAT+TGG | + | chr1_4:42105927-42105946 | None:intergenic | 45.0% | |
| CCGTTGCAATAACCAAAGTC+TGG | + | chr1_4:42106028-42106047 | None:intergenic | 45.0% | |
| ! | TTGACCGATTTCGGTGTAGA+AGG | - | chr1_4:42106160-42106179 | Msa0163780:intron | 45.0% |
| AGCTCCTTCTACACCGAAAT+CGG | + | chr1_4:42106167-42106186 | None:intergenic | 45.0% | |
| TGATGCCGACAAATTGTACG+AGG | - | chr1_4:42106222-42106241 | Msa0163780:CDS | 45.0% | |
| AATGGGAAAGCTGTGGTTGT+TGG | - | chr1_4:42106262-42106281 | Msa0163780:intron | 45.0% | |
| ATGGGAAAGCTGTGGTTGTT+GGG | - | chr1_4:42106263-42106282 | Msa0163780:intron | 45.0% | |
| ACTTACTGCACCAAGGTTCT+GGG | + | chr1_4:42106357-42106376 | None:intergenic | 45.0% | |
| ATGCACAAATCCGCATGAGT+GGG | + | chr1_4:42106410-42106429 | None:intergenic | 45.0% | |
| TATGCACAAATCCGCATGAG+TGG | + | chr1_4:42106411-42106430 | None:intergenic | 45.0% | |
| GGATTCACCTCTAATTCCGA+TGG | - | chr1_4:42106562-42106581 | Msa0163780:CDS | 45.0% | |
| TACCTCTCCATCGGAATTAG+AGG | + | chr1_4:42106572-42106591 | None:intergenic | 45.0% | |
| CTAATTCCGATGGAGAGGTA+TGG | - | chr1_4:42106572-42106591 | Msa0163780:CDS | 45.0% | |
| CAGTATTCCGAGATCACATG+CGG | + | chr1_4:42106598-42106617 | None:intergenic | 45.0% | |
| CTCGGAATACTGTCATGTGA+TGG | - | chr1_4:42106606-42106625 | Msa0163780:intron | 45.0% | |
| CTTCAACCTGCCCTTTGAAT+AGG | + | chr1_4:42106765-42106784 | None:intergenic | 45.0% | |
| ! | ATTCAAAGGGCAGGTTGAAG+AGG | - | chr1_4:42106765-42106784 | Msa0163780:intron | 45.0% |
| TTGACACAAGCCTCTGGATA+TGG | + | chr1_4:42106818-42106837 | None:intergenic | 45.0% | |
| TAAAGCTTGACACAAGCCTC+TGG | + | chr1_4:42106824-42106843 | None:intergenic | 45.0% | |
| ATAGGGATCATGCCGGAAAA+AGG | + | chr1_4:42107113-42107132 | None:intergenic | 45.0% | |
| !! | AAACTGGGTGTCGGGATATA+GGG | + | chr1_4:42107130-42107149 | None:intergenic | 45.0% |
| !! | AAAACTGGGTGTCGGGATAT+AGG | + | chr1_4:42107131-42107150 | None:intergenic | 45.0% |
| !! | CTATGTAGAAGGTTGGCCTA+AGG | + | chr1_4:42107168-42107187 | None:intergenic | 45.0% |
| !! | TGCCAGTGCTGTTCATTTTG+TGG | - | chr1_4:42107251-42107270 | Msa0163780:intron | 45.0% |
| CCAAGACAGATCAAATGAGC+GGG | + | chr1_4:42107370-42107389 | None:intergenic | 45.0% | |
| GCCAAGACAGATCAAATGAG+CGG | + | chr1_4:42107371-42107390 | None:intergenic | 45.0% | |
| !! | GTTGGTGACACAGTGCTATT+TGG | - | chr1_4:42107408-42107427 | Msa0163780:CDS | 45.0% |
| TGATTCACATCCTTCACTGC+AGG | + | chr1_4:42107567-42107586 | None:intergenic | 45.0% | |
| TGTGAGGGACAAATTGCTTG+GGG | - | chr1_4:42107636-42107655 | Msa0163780:intron | 45.0% | |
| ATCTCTCGCGAACATCACAA+AGG | + | chr1_4:42108119-42108138 | None:intergenic | 45.0% | |
| !! | TGCGGTGGTGGAAGCAATAA+CGG | - | chr1_4:42103854-42103873 | Msa0163780:intron | 50.0% |
| TGAAAGGAATCGGACTGACG+TGG | + | chr1_4:42103900-42103919 | None:intergenic | 50.0% | |
| GTCAAACAGGGAGTTAAGCC+TGG | - | chr1_4:42104546-42104565 | Msa0163780:CDS | 50.0% | |
| CAAACAGGGAGTTAAGCCTG+GGG | - | chr1_4:42104548-42104567 | Msa0163780:CDS | 50.0% | |
| ! | TGAACGTCCTGCTCTAAGCA+AGG | - | chr1_4:42105364-42105383 | Msa0163780:intron | 50.0% |
| AGGTAAGCCTTGCTTAGAGC+AGG | + | chr1_4:42105374-42105393 | None:intergenic | 50.0% | |
| CCATACCTGTGTTGGAAGTG+GGG | - | chr1_4:42105702-42105721 | Msa0163780:CDS | 50.0% | |
| CATACCTGTGTTGGAAGTGG+GGG | - | chr1_4:42105703-42105722 | Msa0163780:CDS | 50.0% | |
| ! | TTGCAACGGGCTCAACTGTA+AGG | - | chr1_4:42106039-42106058 | Msa0163780:intron | 50.0% |
| TGGGAAAGCTGTGGTTGTTG+GGG | - | chr1_4:42106264-42106283 | Msa0163780:intron | 50.0% | |
| GTTGTTGGGGGAGGATACAT+TGG | - | chr1_4:42106277-42106296 | Msa0163780:intron | 50.0% | |
| CACTTACTGCACCAAGGTTC+TGG | + | chr1_4:42106358-42106377 | None:intergenic | 50.0% | |
| CATTACACCTCCCACTCATG+CGG | - | chr1_4:42106397-42106416 | Msa0163780:intron | 50.0% | |
| CACCTCTAATTCCGATGGAG+AGG | - | chr1_4:42106567-42106586 | Msa0163780:CDS | 50.0% | |
| ! | ACTAAAGGACGGAAGGGTAC+TGG | - | chr1_4:42106693-42106712 | Msa0163780:intron | 50.0% |
| AGAGGAGAAGGGTGGAATCA+AGG | - | chr1_4:42106783-42106802 | Msa0163780:intron | 50.0% | |
| TCGGGATATAGGGATCATGC+CGG | + | chr1_4:42107120-42107139 | None:intergenic | 50.0% | |
| GCAATGATGGCCTGCATGAA+AGG | + | chr1_4:42107294-42107313 | None:intergenic | 50.0% | |
| CCCGCTCATTTGATCTGTCT+TGG | - | chr1_4:42107367-42107386 | Msa0163780:CDS | 50.0% | |
| CAATTCTACGGCGACAACGT+TGG | - | chr1_4:42107390-42107409 | Msa0163780:CDS | 50.0% | |
| !! | ATTGGTGCCTTTTTGGAGGG+CGG | - | chr1_4:42107495-42107514 | Msa0163780:intron | 50.0% |
| !! | AAGAGCATTGCCTGCAGTGA+AGG | - | chr1_4:42107554-42107573 | Msa0163780:intron | 50.0% |
| ATGGAAAGTGAGTGCGGTGG+TGG | - | chr1_4:42103842-42103861 | Msa0163780:intron | 55.0% | |
| GATATGATTGCCAGCTCCCC+AGG | + | chr1_4:42104567-42104586 | None:intergenic | 55.0% | |
| ! | GGCTGAGCCTTGTGCAGTTA+TGG | - | chr1_4:42105288-42105307 | Msa0163780:intron | 55.0% |
| CAGCTCCTGCTAGACTTCCT+GGG | - | chr1_4:42105677-42105696 | Msa0163780:CDS | 55.0% | |
| TGGAACCCAGGAAGTCTAGC+AGG | + | chr1_4:42105685-42105704 | None:intergenic | 55.0% | |
| CCAACACAGGTATGGAACCC+AGG | + | chr1_4:42105697-42105716 | None:intergenic | 55.0% | |
| CCTGGGTTCCATACCTGTGT+TGG | - | chr1_4:42105694-42105713 | Msa0163780:CDS | 55.0% | |
| CCCCACTTCCAACACAGGTA+TGG | + | chr1_4:42105705-42105724 | None:intergenic | 55.0% | |
| TTCTCCCCCACTTCCAACAC+AGG | + | chr1_4:42105710-42105729 | None:intergenic | 55.0% | |
| GGGAAAGCTGTGGTTGTTGG+GGG | - | chr1_4:42106265-42106284 | Msa0163780:intron | 55.0% | |
| AAAGCTGTGGTTGTTGGGGG+AGG | - | chr1_4:42106268-42106287 | Msa0163780:intron | 55.0% | |
| TGGGGGAGGATACATTGGTC+TGG | - | chr1_4:42106282-42106301 | Msa0163780:intron | 55.0% | |
| !! | CCAAGGTTCTGGGTAGACCA+TGG | + | chr1_4:42106347-42106366 | None:intergenic | 55.0% |
| CCATGGTCTACCCAGAACCT+TGG | - | chr1_4:42106344-42106363 | Msa0163780:intron | 55.0% | |
| CACAAATCCGCATGAGTGGG+AGG | + | chr1_4:42106407-42106426 | None:intergenic | 55.0% | |
| ATGCGGCCATACCTCTCCAT+CGG | + | chr1_4:42106581-42106600 | None:intergenic | 55.0% | |
| GGTATGGCCGCATGTGATCT+CGG | - | chr1_4:42106588-42106607 | Msa0163780:intron | 55.0% | |
| ! | AGGGCAGGTTGAAGAGGAGA+AGG | - | chr1_4:42106771-42106790 | Msa0163780:intron | 55.0% |
| ! | GGGCAGGTTGAAGAGGAGAA+GGG | - | chr1_4:42106772-42106791 | Msa0163780:intron | 55.0% |
| ! | CAGGTTGAAGAGGAGAAGGG+TGG | - | chr1_4:42106775-42106794 | Msa0163780:intron | 55.0% |
| TGCTCGCAAATCAGCTGAGC+AGG | - | chr1_4:42107023-42107042 | Msa0163780:intron | 55.0% | |
| TCCTGCCTCTGCTGCAATGA+TGG | + | chr1_4:42107307-42107326 | None:intergenic | 55.0% | |
| AGGAGTTCCGCCCTCCAAAA+AGG | + | chr1_4:42107505-42107524 | None:intergenic | 55.0% | |
| GCAGCTCCTGCTAGACTTCC+TGG | - | chr1_4:42105676-42105695 | Msa0163780:CDS | 60.0% | |
| ATCAGCTGAGCAGGCTGCGA+AGG | - | chr1_4:42107032-42107051 | Msa0163780:intron | 60.0% | |
| GCAGGCCATCATTGCAGCAG+AGG | - | chr1_4:42107299-42107318 | Msa0163780:intron | 60.0% | |
| GCCATCATTGCAGCAGAGGC+AGG | - | chr1_4:42107303-42107322 | Msa0163780:intron | 60.0% | |
| GGGAGTTAAGCCTGGGGAGC+TGG | - | chr1_4:42104554-42104573 | Msa0163780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 42103758 | 42108200 | 42103758 | ID=Msa0163780;Name=Msa0163780 |
| chr1_4 | mRNA | 42103758 | 42108200 | 42103758 | ID=Msa0163780-mRNA-1;Parent=Msa0163780;Name=Msa0163780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=267|1|1|1|0.81|0.66|12|339|434 |
| chr1_4 | exon | 42103758 | 42103854 | 42103758 | ID=Msa0163780-mRNA-1:exon:12235;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42104090 | 42104655 | 42104090 | ID=Msa0163780-mRNA-1:exon:12234;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42104905 | 42105045 | 42104905 | ID=Msa0163780-mRNA-1:exon:12233;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42105154 | 42105279 | 42105154 | ID=Msa0163780-mRNA-1:exon:12232;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42105370 | 42105488 | 42105370 | ID=Msa0163780-mRNA-1:exon:12231;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42105588 | 42105807 | 42105588 | ID=Msa0163780-mRNA-1:exon:12230;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42105903 | 42106021 | 42105903 | ID=Msa0163780-mRNA-1:exon:12229;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42106198 | 42106278 | 42106198 | ID=Msa0163780-mRNA-1:exon:12228;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42106554 | 42106605 | 42106554 | ID=Msa0163780-mRNA-1:exon:12227;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42107362 | 42107433 | 42107362 | ID=Msa0163780-mRNA-1:exon:12226;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42107827 | 42108122 | 42107827 | ID=Msa0163780-mRNA-1:exon:12225;Parent=Msa0163780-mRNA-1 |
| chr1_4 | exon | 42108179 | 42108200 | 42108179 | ID=Msa0163780-mRNA-1:exon:12224;Parent=Msa0163780-mRNA-1 |
| chr1_4 | five_prime_UTR | 42108179 | 42108200 | 42108179 | ID=Msa0163780-mRNA-1:five_prime_utr;Parent=Msa0163780-mRNA-1 |
| chr1_4 | five_prime_UTR | 42107878 | 42108122 | 42107878 | ID=Msa0163780-mRNA-1:five_prime_utr;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42107827 | 42107877 | 42107827 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42107362 | 42107433 | 42107362 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42106554 | 42106605 | 42106554 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42106198 | 42106278 | 42106198 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42105903 | 42106021 | 42105903 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42105588 | 42105807 | 42105588 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42105370 | 42105488 | 42105370 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42105154 | 42105279 | 42105154 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42104905 | 42105045 | 42104905 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | CDS | 42104332 | 42104655 | 42104332 | ID=Msa0163780-mRNA-1:cds;Parent=Msa0163780-mRNA-1 |
| chr1_4 | three_prime_UTR | 42104090 | 42104331 | 42104090 | ID=Msa0163780-mRNA-1:three_prime_utr;Parent=Msa0163780-mRNA-1 |
| chr1_4 | three_prime_UTR | 42103758 | 42103854 | 42103758 | ID=Msa0163780-mRNA-1:three_prime_utr;Parent=Msa0163780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
