AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216260 MtrunA17_Chr4g0065831 86.154 130 0 1 1 112 1 130 5.31e-75 218
Msa1216260 MtrunA17_Chr4g0051921 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa1216260 MtrunA17_Chr1g0205971 85.385 130 1 1 1 112 1 130 1.51e-74 216
Msa1216260 MtrunA17_Chr8g0389371 46.400 125 49 1 6 112 5 129 1.48e-36 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216260 AT5G59850.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1216260 AT1G07770.2 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1216260 AT1G07770.3 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1216260 AT1G07770.1 85.385 130 1 1 1 112 1 130 1.16e-74 217
Msa1216260 AT3G46040.1 83.846 130 3 1 1 112 1 130 2.86e-73 214
Msa1216260 AT2G39590.1 79.231 130 9 1 1 112 1 130 4.28e-69 203
Msa1216260 AT4G29430.1 45.600 125 50 1 6 112 5 129 8.11e-35 116
Msa1216260 AT2G19720.1 46.400 125 49 1 6 112 5 129 1.19e-34 116

Find 61 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATAATTGACCCCATGAATT+TGG 0.119068 8_1:+77894140 Msa1216260:three_prime_UTR
GACCACTTCTGCTGGTATTA+TGG 0.215449 8_1:+77893708 Msa1216260:CDS
CTTCTACGGCGACGTGTTTC+CGG 0.231531 8_1:+77892308 Msa1216260:five_prime_UTR
TATAGTTCCAAATCCATAAA+AGG 0.241591 8_1:+77894114 Msa1216260:three_prime_UTR
TGTTGAGCACTTTGATTATA+AGG 0.241849 8_1:+77894001 Msa1216260:three_prime_UTR
GGCACCTTTCTCTTGTCTTT+CGG 0.298506 8_1:+77892329 Msa1216260:five_prime_UTR
TTATGCTTTATAGGTTATAT+TGG 0.301097 8_1:+77892758 Msa1216260:intron
TTAACTTGTATGATACTCTA+TGG 0.320578 8_1:-77894086 None:intergenic
ACTATTCTTGATATTACTAA+TGG 0.327101 8_1:-77893861 None:intergenic
CAATATCATATTCTAATAAC+TGG 0.338860 8_1:-77894057 None:intergenic
TGCTCTTTGTACATGACAAT+TGG 0.352382 8_1:-77894165 None:intergenic
ATAATTGACCCCATGAATTT+GGG 0.365305 8_1:+77894141 Msa1216260:three_prime_UTR
GATGAGACTTATATATTCCT+AGG 0.371059 8_1:-77892236 None:intergenic
ACAATTAAGCCAGTACATTT+CGG 0.380380 8_1:-77893972 None:intergenic
TATGATTAGGCCTTCCTCTA+AGG 0.385448 8_1:+77892518 Msa1216260:CDS
GACAATTGGACCCAAATTCA+TGG 0.397212 8_1:-77894151 None:intergenic
GAATTTGATGATGACCTTAG+AGG 0.411030 8_1:-77892532 None:intergenic
CGATGAAAATGTAAAGAAAT+CGG 0.412135 8_1:-77893947 None:intergenic
CATAGATATTTGAATTGATC+TGG 0.412306 8_1:+77894033 Msa1216260:three_prime_UTR
CAAAGAGCATTTGCAGATGC+AGG 0.442930 8_1:+77894179 Msa1216260:three_prime_UTR
GAAAGCGTCAAGTTATGATT+AGG 0.452540 8_1:+77892505 Msa1216260:CDS
TATGTTGATGATCACAGATC+TGG 0.452973 8_1:+77892791 Msa1216260:CDS
GAGCACTTTGATTATAAGGT+TGG 0.453448 8_1:+77894005 Msa1216260:three_prime_UTR
TTAGTAATATCAAGAATAGT+AGG 0.463110 8_1:+77893864 Msa1216260:three_prime_UTR
GGTCCTTGGCTTCTTCTACT+AGG 0.468896 8_1:+77893768 Msa1216260:CDS
TCTGATTTCGATTTCTTCTA+CGG 0.477063 8_1:+77892294 Msa1216260:five_prime_UTR
ATATATTCCTAGGGTTTACA+AGG 0.477539 8_1:-77892226 None:intergenic
AATGTTGGTGGTAAGGTCCT+TGG 0.482167 8_1:+77893754 Msa1216260:CDS
TTCATCGTACCGAAATGTAC+TGG 0.484284 8_1:+77893963 Msa1216260:three_prime_UTR
AAAATCGTTGTTGAATTGAA+TGG 0.485579 8_1:+77892815 Msa1216260:CDS
GAGAAAGAATGTTGGTGGTA+AGG 0.495772 8_1:+77893747 Msa1216260:CDS
ACTAGGCTAGTTCCTTGTTG+AGG 0.504923 8_1:+77893785 Msa1216260:exon
ATGAGACTTATATATTCCTA+GGG 0.512453 8_1:-77892235 None:intergenic
ATGGTAGGTTGAACAAATGT+GGG 0.519393 8_1:+77892834 Msa1216260:CDS
ATCCATAATACCAGCAGAAG+TGG 0.531152 8_1:-77893710 None:intergenic
ACAATTGGACCCAAATTCAT+GGG 0.538561 8_1:-77894150 None:intergenic
ATGTACAATGCTGAGAAAAG+AGG 0.544704 8_1:+77892483 Msa1216260:CDS
ATAAATTATAGCAACCAACT+AGG 0.562234 8_1:-77893924 None:intergenic
ATGTTGATGATCACAGATCT+GGG 0.565212 8_1:+77892792 Msa1216260:CDS
GCTAGGAGAAAGAATGTTGG+TGG 0.567141 8_1:+77893742 Msa1216260:CDS
TAGCCTAGTAGAAGAAGCCA+AGG 0.575489 8_1:-77893771 None:intergenic
AATGGTAGGTTGAACAAATG+TGG 0.577364 8_1:+77892833 Msa1216260:CDS
TGGCTTGCTGGATGTAATGG+TGG 0.580898 8_1:+77893828 Msa1216260:three_prime_UTR
GAGGCTAGGAGAAAGAATGT+TGG 0.584494 8_1:+77893739 Msa1216260:CDS
TTATGGATCATGAAGAGGCT+AGG 0.585160 8_1:+77893725 Msa1216260:CDS
ATTAGAATATGATATTGCAT+AGG 0.588865 8_1:+77894063 Msa1216260:three_prime_UTR
GAAAGACAAGAGAAAGGTGC+CGG 0.589372 8_1:-77892327 None:intergenic
TCAAAACCCTTGTAAACCCT+AGG 0.593411 8_1:+77892219 Msa1216260:five_prime_UTR
TTTGTGAATCTCAGAAACCA+TGG 0.598315 8_1:+77892425 Msa1216260:intron
TGGTATTATGGATCATGAAG+AGG 0.606467 8_1:+77893720 Msa1216260:CDS
TTGATGATGACCTTAGAGGA+AGG 0.613228 8_1:-77892528 None:intergenic
TCGTTGTTGAATTGAATGGT+AGG 0.614641 8_1:+77892819 Msa1216260:CDS
AAAGAGCATTTGCAGATGCA+GGG 0.628128 8_1:+77894180 Msa1216260:three_prime_UTR
CTTACCGAAAGACAAGAGAA+AGG 0.639302 8_1:-77892333 None:intergenic
CAACACACTGACTCTCACCA+TGG 0.647471 8_1:-77892442 None:intergenic
TATATTCCTAGGGTTTACAA+GGG 0.653059 8_1:-77892225 None:intergenic
GTAGAAGAAATCGAAATCAG+AGG 0.659797 8_1:-77892292 None:intergenic
CAGAGGAAATGAAATCGCGA+CGG 0.678141 8_1:-77892275 None:intergenic
CAATTGGACCCAAATTCATG+GGG 0.705879 8_1:-77894149 None:intergenic
TGGTAGGTTGAACAAATGTG+GGG 0.708928 8_1:+77892835 Msa1216260:CDS
TTGACACCGACATCAAAACG+AGG 0.734537 8_1:-77892866 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATTATAAAAATATAA+GGG - chr8_1:77893662-77893681 None:intergenic 0.0%
!! TTTATAATTATAAAAATATA+AGG - chr8_1:77893663-77893682 None:intergenic 0.0%
!! TTATAATTATAAAAATATAA+GGG - chr8_1:77893662-77893681 None:intergenic 0.0%
!! TTTATAATTATAAAAATATA+AGG - chr8_1:77893663-77893682 None:intergenic 0.0%
!!! ATCTTTTTTTTTTTCATTGA+AGG + chr8_1:77892594-77892613 Msa1216260:intron 15.0%
!!! TTTGATTTGATATAATTTTG+TGG + chr8_1:77892682-77892701 Msa1216260:intron 15.0%
!!! TTGATTTGATATAATTTTGT+GGG + chr8_1:77892683-77892702 Msa1216260:intron 15.0%
!!! TTTTGATTTGATATATTTTG+TGG + chr8_1:77892734-77892753 Msa1216260:intron 15.0%
!!! TTTGATTTGATATATTTTGT+GGG + chr8_1:77892735-77892754 Msa1216260:intron 15.0%
!!! TTGAAAACAATACTAATTTT+TGG + chr8_1:77892937-77892956 Msa1216260:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG + chr8_1:77892938-77892957 Msa1216260:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG - chr8_1:77893448-77893467 None:intergenic 15.0%
!! TCTTAAATAATAACAACTTA+AGG - chr8_1:77893572-77893591 None:intergenic 15.0%
!! TAATTATAAAATTTGCAGTT+TGG + chr8_1:77893673-77893692 Msa1216260:intron 15.0%
!!! ATCTTTTTTTTTTTCATTGA+AGG + chr8_1:77892594-77892613 Msa1216260:intron 15.0%
!!! TTTGATTTGATATAATTTTG+TGG + chr8_1:77892682-77892701 Msa1216260:intron 15.0%
!!! TTGATTTGATATAATTTTGT+GGG + chr8_1:77892683-77892702 Msa1216260:intron 15.0%
!!! TTTTGATTTGATATATTTTG+TGG + chr8_1:77892734-77892753 Msa1216260:intron 15.0%
!!! TTTGATTTGATATATTTTGT+GGG + chr8_1:77892735-77892754 Msa1216260:intron 15.0%
!!! TTGAAAACAATACTAATTTT+TGG + chr8_1:77892937-77892956 Msa1216260:intron 15.0%
!!! TGAAAACAATACTAATTTTT+GGG + chr8_1:77892938-77892957 Msa1216260:intron 15.0%
!! CTAAAATTGATCATAAAAAA+CGG - chr8_1:77893448-77893467 None:intergenic 15.0%
!! TCTTAAATAATAACAACTTA+AGG - chr8_1:77893572-77893591 None:intergenic 15.0%
!! TAATTATAAAATTTGCAGTT+TGG + chr8_1:77893673-77893692 Msa1216260:intron 15.0%
!! TTGCATGATTCAATTATTTA+GGG + chr8_1:77892617-77892636 Msa1216260:intron 20.0%
!! TTGCATGATTCAATTATTTA+GGG + chr8_1:77892617-77892636 Msa1216260:intron 20.0%
!! TTATGCTTTATAGGTTATAT+TGG + chr8_1:77892758-77892777 Msa1216260:intron 20.0%
!!! TAAAAAACGGAGATTTTTTT+AGG - chr8_1:77893435-77893454 None:intergenic 20.0%
!!! ATTTTTGAGATTTCAGTTTT+TGG + chr8_1:77893808-77893827 Msa1216260:three_prime_UTR 20.0%
!! ACTATTCTTGATATTACTAA+TGG - chr8_1:77893864-77893883 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG + chr8_1:77893864-77893883 Msa1216260:three_prime_UTR 20.0%
!! CAATATCATATTCTAATAAC+TGG - chr8_1:77894060-77894079 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG + chr8_1:77894063-77894082 Msa1216260:three_prime_UTR 20.0%
!! TTGCATGATTCAATTATTTA+GGG + chr8_1:77892617-77892636 Msa1216260:intron 20.0%
!! TTGCATGATTCAATTATTTA+GGG + chr8_1:77892617-77892636 Msa1216260:intron 20.0%
!! TTATGCTTTATAGGTTATAT+TGG + chr8_1:77892758-77892777 Msa1216260:intron 20.0%
!!! TAAAAAACGGAGATTTTTTT+AGG - chr8_1:77893435-77893454 None:intergenic 20.0%
!!! ATTTTTGAGATTTCAGTTTT+TGG + chr8_1:77893808-77893827 Msa1216260:three_prime_UTR 20.0%
!! ACTATTCTTGATATTACTAA+TGG - chr8_1:77893864-77893883 None:intergenic 20.0%
!! TTAGTAATATCAAGAATAGT+AGG + chr8_1:77893864-77893883 Msa1216260:three_prime_UTR 20.0%
!! CAATATCATATTCTAATAAC+TGG - chr8_1:77894060-77894079 None:intergenic 20.0%
!! ATTAGAATATGATATTGCAT+AGG + chr8_1:77894063-77894082 Msa1216260:three_prime_UTR 20.0%
! ATGAGACTTATATATTCCTA+GGG - chr8_1:77892238-77892257 None:intergenic 25.0%
! ATTAAAGAAGAAGAGGAATA+TGG - chr8_1:77892361-77892380 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG - chr8_1:77892389-77892408 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG + chr8_1:77892388-77892407 Msa1216260:intron 25.0%
! GTTGCATGATTCAATTATTT+AGG + chr8_1:77892616-77892635 Msa1216260:intron 25.0%
!!! TAGGGTTTTTTTTTCATTGA+AGG + chr8_1:77892635-77892654 Msa1216260:intron 25.0%
! GTTGCATGATTCAATTATTT+AGG + chr8_1:77892616-77892635 Msa1216260:intron 25.0%
!! TATAATTTTGTGGGTATGTT+AGG + chr8_1:77892692-77892711 Msa1216260:intron 25.0%
!!! TTAGGTGGTTCAATTTTTTA+GGG + chr8_1:77892710-77892729 Msa1216260:intron 25.0%
! AAAATCGTTGTTGAATTGAA+TGG + chr8_1:77892815-77892834 Msa1216260:CDS 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG + chr8_1:77893059-77893078 Msa1216260:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG - chr8_1:77893316-77893335 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG + chr8_1:77893343-77893362 Msa1216260:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG + chr8_1:77893379-77893398 Msa1216260:intron 25.0%
!!! AGATTTTTTTAGGACTAAAC+TGG - chr8_1:77893425-77893444 None:intergenic 25.0%
! TATTGAACTTATATGAACGT+TGG + chr8_1:77893597-77893616 Msa1216260:intron 25.0%
! ATTGAACTTATATGAACGTT+GGG + chr8_1:77893598-77893617 Msa1216260:intron 25.0%
! AAACAACATATACACACAAA+AGG - chr8_1:77893629-77893648 None:intergenic 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG + chr8_1:77893910-77893929 Msa1216260:three_prime_UTR 25.0%
! ATAAATTATAGCAACCAACT+AGG - chr8_1:77893927-77893946 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG - chr8_1:77893950-77893969 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG + chr8_1:77894033-77894052 Msa1216260:three_prime_UTR 25.0%
!!! TTAACTTGTATGATACTCTA+TGG - chr8_1:77894089-77894108 None:intergenic 25.0%
! TATAGTTCCAAATCCATAAA+AGG + chr8_1:77894114-77894133 Msa1216260:three_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG - chr8_1:77894124-77894143 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG - chr8_1:77894130-77894149 None:intergenic 25.0%
! ATGAGACTTATATATTCCTA+GGG - chr8_1:77892238-77892257 None:intergenic 25.0%
! ATTAAAGAAGAAGAGGAATA+TGG - chr8_1:77892361-77892380 None:intergenic 25.0%
! TAAACAGTGATGAAATGAAA+TGG - chr8_1:77892389-77892408 None:intergenic 25.0%
! ATTTCATTTCATCACTGTTT+AGG + chr8_1:77892388-77892407 Msa1216260:intron 25.0%
! GTTGCATGATTCAATTATTT+AGG + chr8_1:77892616-77892635 Msa1216260:intron 25.0%
!!! TAGGGTTTTTTTTTCATTGA+AGG + chr8_1:77892635-77892654 Msa1216260:intron 25.0%
! GTTGCATGATTCAATTATTT+AGG + chr8_1:77892616-77892635 Msa1216260:intron 25.0%
!! TATAATTTTGTGGGTATGTT+AGG + chr8_1:77892692-77892711 Msa1216260:intron 25.0%
!!! TTAGGTGGTTCAATTTTTTA+GGG + chr8_1:77892710-77892729 Msa1216260:intron 25.0%
! AAAATCGTTGTTGAATTGAA+TGG + chr8_1:77892815-77892834 Msa1216260:CDS 25.0%
!!! TCAGCTTATTTTCATAAACA+TGG + chr8_1:77893059-77893078 Msa1216260:intron 25.0%
!! TGATTTGGAACAAATTTACT+CGG - chr8_1:77893316-77893335 None:intergenic 25.0%
! TCATGCTTCATATTAAAGAT+TGG + chr8_1:77893343-77893362 Msa1216260:intron 25.0%
! TATAGTTTCTTACTCCTATT+TGG + chr8_1:77893379-77893398 Msa1216260:intron 25.0%
!!! AGATTTTTTTAGGACTAAAC+TGG - chr8_1:77893425-77893444 None:intergenic 25.0%
! TATTGAACTTATATGAACGT+TGG + chr8_1:77893597-77893616 Msa1216260:intron 25.0%
! ATTGAACTTATATGAACGTT+GGG + chr8_1:77893598-77893617 Msa1216260:intron 25.0%
! AAACAACATATACACACAAA+AGG - chr8_1:77893629-77893648 None:intergenic 25.0%
!!! TTTGTTTTACAAAACCTAGT+TGG + chr8_1:77893910-77893929 Msa1216260:three_prime_UTR 25.0%
! ATAAATTATAGCAACCAACT+AGG - chr8_1:77893927-77893946 None:intergenic 25.0%
! CGATGAAAATGTAAAGAAAT+CGG - chr8_1:77893950-77893969 None:intergenic 25.0%
! CATAGATATTTGAATTGATC+TGG + chr8_1:77894033-77894052 Msa1216260:three_prime_UTR 25.0%
!!! TTAACTTGTATGATACTCTA+TGG - chr8_1:77894089-77894108 None:intergenic 25.0%
! TATAGTTCCAAATCCATAAA+AGG + chr8_1:77894114-77894133 Msa1216260:three_prime_UTR 25.0%
!! TATCAATCCTTTTATGGATT+TGG - chr8_1:77894124-77894143 None:intergenic 25.0%
!! GTCAATTATCAATCCTTTTA+TGG - chr8_1:77894130-77894149 None:intergenic 25.0%
TATATTCCTAGGGTTTACAA+GGG - chr8_1:77892228-77892247 None:intergenic 30.0%
ATATATTCCTAGGGTTTACA+AGG - chr8_1:77892229-77892248 None:intergenic 30.0%
GATGAGACTTATATATTCCT+AGG - chr8_1:77892239-77892258 None:intergenic 30.0%
TCTGATTTCGATTTCTTCTA+CGG + chr8_1:77892294-77892313 Msa1216260:five_prime_UTR 30.0%
!!! GTTAGGTGGTTCAATTTTTT+AGG + chr8_1:77892709-77892728 Msa1216260:intron 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG + chr8_1:77892749-77892768 Msa1216260:intron 30.0%
TTATCACTTGTGAGAATGTT+TGG + chr8_1:77893005-77893024 Msa1216260:intron 30.0%
TATCACTTGTGAGAATGTTT+GGG + chr8_1:77893006-77893025 Msa1216260:intron 30.0%
AAGTTCACACAAATATGCAT+TGG - chr8_1:77893243-77893262 None:intergenic 30.0%
! CTTCAGTATTATCGATTGTA+TGG + chr8_1:77893274-77893293 Msa1216260:intron 30.0%
AATCTCAAAAATCCTCAACA+AGG - chr8_1:77893800-77893819 None:intergenic 30.0%
ACAATTAAGCCAGTACATTT+CGG - chr8_1:77893975-77893994 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG + chr8_1:77894001-77894020 Msa1216260:three_prime_UTR 30.0%
ATAATTGACCCCATGAATTT+GGG + chr8_1:77894141-77894160 Msa1216260:three_prime_UTR 30.0%
TATATTCCTAGGGTTTACAA+GGG - chr8_1:77892228-77892247 None:intergenic 30.0%
ATATATTCCTAGGGTTTACA+AGG - chr8_1:77892229-77892248 None:intergenic 30.0%
GATGAGACTTATATATTCCT+AGG - chr8_1:77892239-77892258 None:intergenic 30.0%
TCTGATTTCGATTTCTTCTA+CGG + chr8_1:77892294-77892313 Msa1216260:five_prime_UTR 30.0%
!!! GTTAGGTGGTTCAATTTTTT+AGG + chr8_1:77892709-77892728 Msa1216260:intron 30.0%
!! TTTTGTGGGTTATGCTTTAT+AGG + chr8_1:77892749-77892768 Msa1216260:intron 30.0%
TTATCACTTGTGAGAATGTT+TGG + chr8_1:77893005-77893024 Msa1216260:intron 30.0%
TATCACTTGTGAGAATGTTT+GGG + chr8_1:77893006-77893025 Msa1216260:intron 30.0%
AAGTTCACACAAATATGCAT+TGG - chr8_1:77893243-77893262 None:intergenic 30.0%
! CTTCAGTATTATCGATTGTA+TGG + chr8_1:77893274-77893293 Msa1216260:intron 30.0%
AATCTCAAAAATCCTCAACA+AGG - chr8_1:77893800-77893819 None:intergenic 30.0%
ACAATTAAGCCAGTACATTT+CGG - chr8_1:77893975-77893994 None:intergenic 30.0%
TGTTGAGCACTTTGATTATA+AGG + chr8_1:77894001-77894020 Msa1216260:three_prime_UTR 30.0%
ATAATTGACCCCATGAATTT+GGG + chr8_1:77894141-77894160 Msa1216260:three_prime_UTR 30.0%
GTAGAAGAAATCGAAATCAG+AGG - chr8_1:77892295-77892314 None:intergenic 35.0%
GGAAGAGATTAAAGAAGAAG+AGG - chr8_1:77892368-77892387 None:intergenic 35.0%
TTTGTGAATCTCAGAAACCA+TGG + chr8_1:77892425-77892444 Msa1216260:intron 35.0%
ATGTACAATGCTGAGAAAAG+AGG + chr8_1:77892483-77892502 Msa1216260:CDS 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG + chr8_1:77892505-77892524 Msa1216260:CDS 35.0%
!! GAATTTGATGATGACCTTAG+AGG - chr8_1:77892535-77892554 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG + chr8_1:77892555-77892574 Msa1216260:CDS 35.0%
! AATTTTGTGGGTATGTTAGG+TGG + chr8_1:77892695-77892714 Msa1216260:intron 35.0%
!! TATGTTGATGATCACAGATC+TGG + chr8_1:77892791-77892810 Msa1216260:CDS 35.0%
!! ATGTTGATGATCACAGATCT+GGG + chr8_1:77892792-77892811 Msa1216260:CDS 35.0%
TCGTTGTTGAATTGAATGGT+AGG + chr8_1:77892819-77892838 Msa1216260:CDS 35.0%
! AATGGTAGGTTGAACAAATG+TGG + chr8_1:77892833-77892852 Msa1216260:CDS 35.0%
! ATGGTAGGTTGAACAAATGT+GGG + chr8_1:77892834-77892853 Msa1216260:CDS 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG + chr8_1:77892860-77892879 Msa1216260:intron 35.0%
AGAATGTTTGGGAGAACTTA+TGG + chr8_1:77893017-77893036 Msa1216260:intron 35.0%
GCACAAGTGTTTATCATGAT+AGG + chr8_1:77893133-77893152 Msa1216260:intron 35.0%
AGTAAGCTGTTTATCCAAAC+AGG + chr8_1:77893177-77893196 Msa1216260:intron 35.0%
ACACAAATATGCATTGGAAG+TGG - chr8_1:77893237-77893256 None:intergenic 35.0%
! ATTTACTCGGCTTGACAAAA+TGG - chr8_1:77893303-77893322 None:intergenic 35.0%
AAGCATGAACTATCGTGATT+TGG - chr8_1:77893331-77893350 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG + chr8_1:77893388-77893407 Msa1216260:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG - chr8_1:77893396-77893415 None:intergenic 35.0%
!! TCAATTTTAGCCTCTACTAG+AGG + chr8_1:77893458-77893477 Msa1216260:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG + chr8_1:77893510-77893529 Msa1216260:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG + chr8_1:77893520-77893539 Msa1216260:intron 35.0%
TGGTATTATGGATCATGAAG+AGG + chr8_1:77893720-77893739 Msa1216260:CDS 35.0%
GAGCACTTTGATTATAAGGT+TGG + chr8_1:77894005-77894024 Msa1216260:three_prime_UTR 35.0%
GATAATTGACCCCATGAATT+TGG + chr8_1:77894140-77894159 Msa1216260:three_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG - chr8_1:77894153-77894172 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG - chr8_1:77894168-77894187 None:intergenic 35.0%
GTAGAAGAAATCGAAATCAG+AGG - chr8_1:77892295-77892314 None:intergenic 35.0%
GGAAGAGATTAAAGAAGAAG+AGG - chr8_1:77892368-77892387 None:intergenic 35.0%
TTTGTGAATCTCAGAAACCA+TGG + chr8_1:77892425-77892444 Msa1216260:intron 35.0%
ATGTACAATGCTGAGAAAAG+AGG + chr8_1:77892483-77892502 Msa1216260:CDS 35.0%
!! GAAAGCGTCAAGTTATGATT+AGG + chr8_1:77892505-77892524 Msa1216260:CDS 35.0%
!! GAATTTGATGATGACCTTAG+AGG - chr8_1:77892535-77892554 None:intergenic 35.0%
CTCATCGTTATGCAAAAACA+CGG + chr8_1:77892555-77892574 Msa1216260:CDS 35.0%
! AATTTTGTGGGTATGTTAGG+TGG + chr8_1:77892695-77892714 Msa1216260:intron 35.0%
!! TATGTTGATGATCACAGATC+TGG + chr8_1:77892791-77892810 Msa1216260:CDS 35.0%
!! ATGTTGATGATCACAGATCT+GGG + chr8_1:77892792-77892811 Msa1216260:CDS 35.0%
TCGTTGTTGAATTGAATGGT+AGG + chr8_1:77892819-77892838 Msa1216260:CDS 35.0%
! AATGGTAGGTTGAACAAATG+TGG + chr8_1:77892833-77892852 Msa1216260:CDS 35.0%
! ATGGTAGGTTGAACAAATGT+GGG + chr8_1:77892834-77892853 Msa1216260:CDS 35.0%
!! ATTAGTCCTCGTTTTGATGT+CGG + chr8_1:77892860-77892879 Msa1216260:intron 35.0%
AGAATGTTTGGGAGAACTTA+TGG + chr8_1:77893017-77893036 Msa1216260:intron 35.0%
GCACAAGTGTTTATCATGAT+AGG + chr8_1:77893133-77893152 Msa1216260:intron 35.0%
AGTAAGCTGTTTATCCAAAC+AGG + chr8_1:77893177-77893196 Msa1216260:intron 35.0%
ACACAAATATGCATTGGAAG+TGG - chr8_1:77893237-77893256 None:intergenic 35.0%
! ATTTACTCGGCTTGACAAAA+TGG - chr8_1:77893303-77893322 None:intergenic 35.0%
AAGCATGAACTATCGTGATT+TGG - chr8_1:77893331-77893350 None:intergenic 35.0%
! TTACTCCTATTTGGTCTTTG+TGG + chr8_1:77893388-77893407 Msa1216260:intron 35.0%
TTGTTCCACAAAGACCAAAT+AGG - chr8_1:77893396-77893415 None:intergenic 35.0%
!! TCAATTTTAGCCTCTACTAG+AGG + chr8_1:77893458-77893477 Msa1216260:intron 35.0%
!! TCTGTCAACAATTTGTTGCT+TGG + chr8_1:77893510-77893529 Msa1216260:intron 35.0%
! ATTTGTTGCTTGGATGATCT+AGG + chr8_1:77893520-77893539 Msa1216260:intron 35.0%
TGGTATTATGGATCATGAAG+AGG + chr8_1:77893720-77893739 Msa1216260:CDS 35.0%
GAGCACTTTGATTATAAGGT+TGG + chr8_1:77894005-77894024 Msa1216260:three_prime_UTR 35.0%
GATAATTGACCCCATGAATT+TGG + chr8_1:77894140-77894159 Msa1216260:three_prime_UTR 35.0%
ACAATTGGACCCAAATTCAT+GGG - chr8_1:77894153-77894172 None:intergenic 35.0%
TGCTCTTTGTACATGACAAT+TGG - chr8_1:77894168-77894187 None:intergenic 35.0%
TCAAAACCCTTGTAAACCCT+AGG + chr8_1:77892219-77892238 Msa1216260:five_prime_UTR 40.0%
CTTACCGAAAGACAAGAGAA+AGG - chr8_1:77892336-77892355 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG + chr8_1:77892518-77892537 Msa1216260:CDS 40.0%
!! TTGATGATGACCTTAGAGGA+AGG - chr8_1:77892531-77892550 None:intergenic 40.0%
!! CGTGTTTTTGCATAACGATG+AGG - chr8_1:77892557-77892576 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG + chr8_1:77892835-77892854 Msa1216260:CDS 40.0%
! TTGTTTTCAACTGACCTGTC+TGG - chr8_1:77892927-77892946 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG + chr8_1:77892965-77892984 Msa1216260:intron 40.0%
CATAGCCATACGTAAGAACA+TGG - chr8_1:77893204-77893223 None:intergenic 40.0%
CACATAAAAGCCTCTAGTAG+AGG - chr8_1:77893471-77893490 None:intergenic 40.0%
! CTACTAGAGGCTTTTATGTG+TGG + chr8_1:77893471-77893490 Msa1216260:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG + chr8_1:77893700-77893719 Msa1216260:CDS 40.0%
ATCCATAATACCAGCAGAAG+TGG - chr8_1:77893713-77893732 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG + chr8_1:77893725-77893744 Msa1216260:CDS 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG + chr8_1:77893747-77893766 Msa1216260:CDS 40.0%
!!! GATTTCAGTTTTTGGCTTGC+TGG + chr8_1:77893816-77893835 Msa1216260:three_prime_UTR 40.0%
!!! TTTTGGCTTGCTGGATGTAA+TGG + chr8_1:77893825-77893844 Msa1216260:three_prime_UTR 40.0%
TTCATCGTACCGAAATGTAC+TGG + chr8_1:77893963-77893982 Msa1216260:three_prime_UTR 40.0%
CAATTGGACCCAAATTCATG+GGG - chr8_1:77894152-77894171 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG - chr8_1:77894154-77894173 None:intergenic 40.0%
TCAAAACCCTTGTAAACCCT+AGG + chr8_1:77892219-77892238 Msa1216260:five_prime_UTR 40.0%
CTTACCGAAAGACAAGAGAA+AGG - chr8_1:77892336-77892355 None:intergenic 40.0%
TATGATTAGGCCTTCCTCTA+AGG + chr8_1:77892518-77892537 Msa1216260:CDS 40.0%
!! TTGATGATGACCTTAGAGGA+AGG - chr8_1:77892531-77892550 None:intergenic 40.0%
!! CGTGTTTTTGCATAACGATG+AGG - chr8_1:77892557-77892576 None:intergenic 40.0%
! TGGTAGGTTGAACAAATGTG+GGG + chr8_1:77892835-77892854 Msa1216260:CDS 40.0%
! TTGTTTTCAACTGACCTGTC+TGG - chr8_1:77892927-77892946 None:intergenic 40.0%
! TTCTTTTGCATAGTGTCTGC+TGG + chr8_1:77892965-77892984 Msa1216260:intron 40.0%
CATAGCCATACGTAAGAACA+TGG - chr8_1:77893204-77893223 None:intergenic 40.0%
CACATAAAAGCCTCTAGTAG+AGG - chr8_1:77893471-77893490 None:intergenic 40.0%
! CTACTAGAGGCTTTTATGTG+TGG + chr8_1:77893471-77893490 Msa1216260:intron 40.0%
!!! ATTGTTTTGACCACTTCTGC+TGG + chr8_1:77893700-77893719 Msa1216260:CDS 40.0%
ATCCATAATACCAGCAGAAG+TGG - chr8_1:77893713-77893732 None:intergenic 40.0%
TTATGGATCATGAAGAGGCT+AGG + chr8_1:77893725-77893744 Msa1216260:CDS 40.0%
!! GAGAAAGAATGTTGGTGGTA+AGG + chr8_1:77893747-77893766 Msa1216260:CDS 40.0%
!!! GATTTCAGTTTTTGGCTTGC+TGG + chr8_1:77893816-77893835 Msa1216260:three_prime_UTR 40.0%
!!! TTTTGGCTTGCTGGATGTAA+TGG + chr8_1:77893825-77893844 Msa1216260:three_prime_UTR 40.0%
TTCATCGTACCGAAATGTAC+TGG + chr8_1:77893963-77893982 Msa1216260:three_prime_UTR 40.0%
CAATTGGACCCAAATTCATG+GGG - chr8_1:77894152-77894171 None:intergenic 40.0%
GACAATTGGACCCAAATTCA+TGG - chr8_1:77894154-77894173 None:intergenic 40.0%
CAGAGGAAATGAAATCGCGA+CGG - chr8_1:77892278-77892297 None:intergenic 45.0%
! GAAAGACAAGAGAAAGGTGC+CGG - chr8_1:77892330-77892349 None:intergenic 45.0%
GGCACCTTTCTCTTGTCTTT+CGG + chr8_1:77892329-77892348 Msa1216260:five_prime_UTR 45.0%
TTGACACCGACATCAAAACG+AGG - chr8_1:77892869-77892888 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG + chr8_1:77892868-77892887 Msa1216260:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG + chr8_1:77892882-77892901 Msa1216260:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG - chr8_1:77892922-77892941 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG - chr8_1:77892923-77892942 None:intergenic 45.0%
CGTAAGAACATGGTCCTGTT+TGG - chr8_1:77893194-77893213 None:intergenic 45.0%
CAGGACCATGTTCTTACGTA+TGG + chr8_1:77893196-77893215 Msa1216260:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG + chr8_1:77893708-77893727 Msa1216260:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr8_1:77893739-77893758 Msa1216260:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr8_1:77893742-77893761 Msa1216260:CDS 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG + chr8_1:77893754-77893773 Msa1216260:CDS 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG - chr8_1:77893774-77893793 None:intergenic 45.0%
! ACTAGGCTAGTTCCTTGTTG+AGG + chr8_1:77893785-77893804 Msa1216260:exon 45.0%
!! CAAAGAGCATTTGCAGATGC+AGG + chr8_1:77894179-77894198 Msa1216260:three_prime_UTR 45.0%
CAGAGGAAATGAAATCGCGA+CGG - chr8_1:77892278-77892297 None:intergenic 45.0%
! GAAAGACAAGAGAAAGGTGC+CGG - chr8_1:77892330-77892349 None:intergenic 45.0%
GGCACCTTTCTCTTGTCTTT+CGG + chr8_1:77892329-77892348 Msa1216260:five_prime_UTR 45.0%
TTGACACCGACATCAAAACG+AGG - chr8_1:77892869-77892888 None:intergenic 45.0%
!!! TCGTTTTGATGTCGGTGTCA+AGG + chr8_1:77892868-77892887 Msa1216260:intron 45.0%
GTGTCAAGGAGATTGAAGGT+TGG + chr8_1:77892882-77892901 Msa1216260:intron 45.0%
TTCAACTGACCTGTCTGGAA+GGG - chr8_1:77892922-77892941 None:intergenic 45.0%
TTTCAACTGACCTGTCTGGA+AGG - chr8_1:77892923-77892942 None:intergenic 45.0%
CGTAAGAACATGGTCCTGTT+TGG - chr8_1:77893194-77893213 None:intergenic 45.0%
CAGGACCATGTTCTTACGTA+TGG + chr8_1:77893196-77893215 Msa1216260:intron 45.0%
GACCACTTCTGCTGGTATTA+TGG + chr8_1:77893708-77893727 Msa1216260:CDS 45.0%
GAGGCTAGGAGAAAGAATGT+TGG + chr8_1:77893739-77893758 Msa1216260:CDS 45.0%
GCTAGGAGAAAGAATGTTGG+TGG + chr8_1:77893742-77893761 Msa1216260:CDS 45.0%
!! AATGTTGGTGGTAAGGTCCT+TGG + chr8_1:77893754-77893773 Msa1216260:CDS 45.0%
TAGCCTAGTAGAAGAAGCCA+AGG - chr8_1:77893774-77893793 None:intergenic 45.0%
! ACTAGGCTAGTTCCTTGTTG+AGG + chr8_1:77893785-77893804 Msa1216260:exon 45.0%
!! CAACACACTGACTCTCACCA+TGG - chr8_1:77892445-77892464 None:intergenic 50.0%
!! GTCGGTGTCAAGGAGATTGA+AGG + chr8_1:77892878-77892897 Msa1216260:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG + chr8_1:77892910-77892929 Msa1216260:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG + chr8_1:77893768-77893787 Msa1216260:CDS 50.0%
!! TGGCTTGCTGGATGTAATGG+TGG + chr8_1:77893828-77893847 Msa1216260:three_prime_UTR 50.0%
!! CAACACACTGACTCTCACCA+TGG - chr8_1:77892445-77892464 None:intergenic 50.0%
!! GTCGGTGTCAAGGAGATTGA+AGG + chr8_1:77892878-77892897 Msa1216260:intron 50.0%
TAGACTTCTCCCTTCCAGAC+AGG + chr8_1:77892910-77892929 Msa1216260:intron 50.0%
GGTCCTTGGCTTCTTCTACT+AGG + chr8_1:77893768-77893787 Msa1216260:CDS 50.0%
!! TGGCTTGCTGGATGTAATGG+TGG + chr8_1:77893828-77893847 Msa1216260:three_prime_UTR 50.0%
CTTCTACGGCGACGTGTTTC+CGG + chr8_1:77892308-77892327 Msa1216260:five_prime_UTR 55.0%
CTTCTACGGCGACGTGTTTC+CGG + chr8_1:77892308-77892327 Msa1216260:five_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 77892188 77894201 77892188 ID=Msa1216260;Name=Msa1216260
chr8_1 mRNA 77892188 77894201 77892188 ID=Msa1216260-mRNA-1;Parent=Msa1216260;Name=Msa1216260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=168|0.66|0.75|1|0.66|0.75|4|412|112
chr8_1 exon 77892188 77892350 77892188 ID=Msa1216260-mRNA-1:exon:26908;Parent=Msa1216260-mRNA-1
chr8_1 exon 77892439 77892576 77892439 ID=Msa1216260-mRNA-1:exon:26909;Parent=Msa1216260-mRNA-1
chr8_1 exon 77892771 77892877 77892771 ID=Msa1216260-mRNA-1:exon:26910;Parent=Msa1216260-mRNA-1
chr8_1 exon 77893691 77894201 77893691 ID=Msa1216260-mRNA-1:exon:26911;Parent=Msa1216260-mRNA-1
chr8_1 five_prime_UTR 77892188 77892350 77892188 ID=Msa1216260-mRNA-1:five_prime_utr;Parent=Msa1216260-mRNA-1
chr8_1 five_prime_UTR 77892439 77892443 77892439 ID=Msa1216260-mRNA-1:five_prime_utr;Parent=Msa1216260-mRNA-1
chr8_1 CDS 77892444 77892576 77892444 ID=Msa1216260-mRNA-1:cds;Parent=Msa1216260-mRNA-1
chr8_1 CDS 77892771 77892877 77892771 ID=Msa1216260-mRNA-1:cds;Parent=Msa1216260-mRNA-1
chr8_1 CDS 77893691 77893789 77893691 ID=Msa1216260-mRNA-1:cds;Parent=Msa1216260-mRNA-1
chr8_1 three_prime_UTR 77893790 77894201 77893790 ID=Msa1216260-mRNA-1:three_prime_utr;Parent=Msa1216260-mRNA-1
Gene Sequence

>Msa1216260

ATGGTGAGAGTCAGTGTGTTGAACGATGCTCTTAAGAGTATGTACAATGCTGAGAAAAGAGGAAAGCGTCAAGTTATGATTAGGCCTTCCTCTAAGGTCATCATCAAATTCCTCATCGTTATGCAAAAACACGGTTATATTGGAGAGTTTGAGTATGTTGATGATCACAGATCTGGGAAAATCGTTGTTGAATTGAATGGTAGGTTGAACAAATGTGGGGTTATTAGTCCTCGTTTTGATTTTGGATACATTGTTTTGACCACTTCTGCTGGTATTATGGATCATGAAGAGGCTAGGAGAAAGAATGTTGGTGGTAAGGTCCTTGGCTTCTTCTACTAG

Protein sequence

>Msa1216260

MVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*