AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644610


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644610 MtrunA17_Chr4g0032081 96.564 553 19 0 1 553 1 553 0.0 1072
Msa0644610 MtrunA17_Chr4g0034391 26.199 271 170 9 91 345 71 327 2.04e-16 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644610 AT3G46780.1 57.643 543 169 12 18 553 22 510 0.0 538
Msa0644610 AT3G18890.1 24.806 258 166 8 102 345 84 327 3.37e-14 75.9

Find 170 sgRNAs with CRISPR-Local

Find 273 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATCCTCATCAGGCTTT+TGG 0.176821 4_3:+48666468 None:intergenic
CTGTGTTAATGCTGATAATT+TGG 0.194018 4_3:-48666186 Msa0644610:three_prime_UTR
TCCCTTGAGGTATCTTTAAT+TGG 0.206869 4_3:+48665734 None:intergenic
GGTTTACTCACACTGCTTCT+TGG 0.261784 4_3:+48666356 None:intergenic
AACATAGTAATGTTTATCTT+TGG 0.289226 4_3:+48669349 None:intergenic
TTGCAACCGGCAAAAGGTTT+TGG 0.289282 4_3:-48666539 Msa0644610:CDS
AAAGTTCGTCTACACGCTTC+AGG 0.292266 4_3:+48667015 None:intergenic
TCTTATAATGTGGTTGTCTT+AGG 0.298572 4_3:-48667669 Msa0644610:CDS
ACGGTGGCAACTTGCACCTT+TGG 0.301454 4_3:+48666443 None:intergenic
AAGGAGGTTAGGAAGGTATT+TGG 0.303897 4_3:-48666299 Msa0644610:CDS
GGAGGGTCATTTCCATCATT+TGG 0.308563 4_3:-48669151 Msa0644610:CDS
TGTTTAGTCACTGCTTTGTT+AGG 0.318987 4_3:+48666389 None:intergenic
GAAGGATCCTTCTTCCTTGC+AGG 0.319646 4_3:+48668968 None:intergenic
TCTTGCCTCTTCCTCTGCTT+TGG 0.320316 4_3:+48666817 None:intergenic
ACACGCTTCAGGGGAGCATT+TGG 0.321580 4_3:+48667026 None:intergenic
TAGATATAGCGAATTGGATT+TGG 0.324740 4_3:+48669432 None:intergenic
GCTTTCCTTCTTCCATCTTC+CGG 0.328667 4_3:+48666863 None:intergenic
CGGTGGCAACTTGCACCTTT+GGG 0.328678 4_3:+48666444 None:intergenic
TCATTTCCATCATTTGGATT+AGG 0.331642 4_3:-48669145 Msa0644610:CDS
GAAAGCCTATGCTGAAATAT+TGG 0.333830 4_3:-48666846 Msa0644610:CDS
AACTTCTCAAAGTATGCAAT+TGG 0.335636 4_3:-48666030 Msa0644610:three_prime_UTR
ACTTGATTCTGCTCAGGAAT+TGG 0.345531 4_3:-48668849 Msa0644610:CDS
GTAATGTTTATCTTTGGCTT+TGG 0.350142 4_3:+48669355 None:intergenic
AGGCGACGGTTTATGAAATA+AGG 0.369922 4_3:-48666002 Msa0644610:three_prime_UTR
TTTGGTTTCTCATCCTCATC+AGG 0.375836 4_3:+48666563 None:intergenic
AACTCTAATAATAACCCTTT+CGG 0.379619 4_3:-48669079 Msa0644610:CDS
TTTGGGTTCTCATCCTCATC+AGG 0.381648 4_3:+48666461 None:intergenic
CAAGAGAAGGCAGAGGCAAC+TGG 0.382618 4_3:-48666683 Msa0644610:CDS
GACGTGGAGACCTCAGTTGC+TGG 0.382640 4_3:+48667942 None:intergenic
TTTGGACCGTTAATCTAGTT+TGG 0.388044 4_3:+48669373 None:intergenic
GGTGTTCAATATTTCTTCAA+TGG 0.392168 4_3:-48669474 Msa0644610:five_prime_UTR
TCTTTGCCAGGTTTGTCATT+TGG 0.397884 4_3:-48668995 Msa0644610:CDS
TTAATCTAGTTTGGTGTTTG+TGG 0.398196 4_3:+48669382 None:intergenic
AGGAGAAACCGAAGGAGGTT+AGG 0.400481 4_3:-48666310 Msa0644610:CDS
CACGCTTCAGGGGAGCATTT+GGG 0.403880 4_3:+48667027 None:intergenic
AACCCTTTCGGATTCGACTT+TGG 0.404280 4_3:-48669067 Msa0644610:CDS
AGATAGTCTCTTGTTTGAAC+AGG 0.404451 4_3:+48666273 None:intergenic
TGACTTCTTTGATCCCTGTT+GGG 0.407851 4_3:-48669030 Msa0644610:CDS
TCAACCTACAATGTACTTGA+TGG 0.408054 4_3:-48667831 Msa0644610:CDS
TCCTGAGCAGAATCAAGTTC+AGG 0.410852 4_3:+48668854 None:intergenic
TACTTTATAGTCGTTCGAAC+CGG 0.411446 4_3:+48667635 None:intergenic
CGATACAAAATCAATTTGTA+AGG 0.413802 4_3:-48665804 Msa0644610:three_prime_UTR
AACCATGTAATCAGATTAGC+AGG 0.417247 4_3:-48666096 Msa0644610:three_prime_UTR
GGCAGAGGCAACTGGAACTT+CGG 0.418026 4_3:-48666675 Msa0644610:CDS
TAATCTAGTTTGGTGTTTGT+GGG 0.423617 4_3:+48669383 None:intergenic
GTGACTTCTTTGATCCCTGT+TGG 0.430673 4_3:-48669031 Msa0644610:CDS
AATACCTTCCTAACCTCCTT+CGG 0.433617 4_3:+48666302 None:intergenic
AACAGAGGGAGTAGAAATGA+GGG 0.436258 4_3:+48665762 None:intergenic
GAAGATATTGTTGAAGAAAG+AGG 0.437771 4_3:+48667803 None:intergenic
TACAGCACTATTCCGGAAGA+TGG 0.440703 4_3:-48666875 Msa0644610:intron
GGCAAGAGTGGAAGCTGAAA+AGG 0.444192 4_3:-48666801 Msa0644610:CDS
CTTGAGGTATCTTTAATTGG+AGG 0.445095 4_3:+48665737 None:intergenic
CAAACACCAAACTAGATTAA+CGG 0.447152 4_3:-48669379 Msa0644610:five_prime_UTR
CTTAGGATGAGATAAAGAAT+TGG 0.448913 4_3:+48669225 None:intergenic
AGATGCCTTGCAAGTAATTC+AGG 0.449862 4_3:-48667919 Msa0644610:CDS
GAAAGCCAAAGCAGAGGAAG+AGG 0.452766 4_3:-48666822 Msa0644610:CDS
TCCTGAACTTGATTCTGCTC+AGG 0.455608 4_3:-48668855 Msa0644610:CDS
AGTTTGATGAACCATTTGTT+TGG 0.455793 4_3:+48669098 None:intergenic
GTGCAAGTTGCCACCGTAAG+AGG 0.460111 4_3:-48666437 Msa0644610:CDS
CATTGCACAGACTTTGCTTA+GGG 0.461014 4_3:-48668903 Msa0644610:CDS
AGCCACCAACGATGCTATCC+TGG 0.462070 4_3:+48667495 None:intergenic
GCATTGCACAGACTTTGCTT+AGG 0.462895 4_3:-48668904 Msa0644610:CDS
TCCACTAGTGCTTGGCCTCA+AGG 0.469026 4_3:+48665908 None:intergenic
GACTCAATAGCAAAAGCAAT+AGG 0.469733 4_3:-48668011 Msa0644610:CDS
GTAAGCTAGATATAGCGAAT+TGG 0.470631 4_3:+48669426 None:intergenic
AACAAAGAGTGTGAACTTGT+TGG 0.472362 4_3:-48669289 Msa0644610:five_prime_UTR
TGCTTCCTAAAATTCAACTT+AGG 0.474583 4_3:+48669208 None:intergenic
CCAAAGTTGCAACCGGCAAA+AGG 0.474620 4_3:-48666545 Msa0644610:CDS
AGCCTTCGCCTGTCCTCTTA+CGG 0.481913 4_3:+48666424 None:intergenic
AAAGTATGCAATTGGGTGGC+AGG 0.482253 4_3:-48666022 Msa0644610:three_prime_UTR
AGGCCAAGCACTAGTGGACT+TGG 0.483727 4_3:-48665903 Msa0644610:three_prime_UTR
ATTCAGGCTGCTCAGCTAGC+AGG 0.485979 4_3:-48667903 Msa0644610:CDS
GAACAGAGGGAGTAGAAATG+AGG 0.489759 4_3:+48665761 None:intergenic
ATAATTTGGTTGGACATGTA+TGG 0.492237 4_3:-48666172 Msa0644610:three_prime_UTR
TGAGAAACCAAAGTTGCAAC+CGG 0.495471 4_3:-48666552 Msa0644610:CDS
AGCAGAGGAAGAGGCAAGAG+TGG 0.497113 4_3:-48666813 Msa0644610:CDS
CCCTTGAGGCCAAGCACTAG+TGG 0.498863 4_3:-48665909 Msa0644610:three_prime_UTR
TTTCTCCAATATTTCAGCAT+AGG 0.501040 4_3:+48666841 None:intergenic
TCAAGAGTTCTTGCAGAAAG+TGG 0.502213 4_3:-48667757 Msa0644610:CDS
TAAAGAATTGGATGAAAGAG+TGG 0.503514 4_3:+48669237 None:intergenic
AAGTTCGTCTACACGCTTCA+GGG 0.503548 4_3:+48667016 None:intergenic
GATGCCATCAAGTACATTGT+AGG 0.505770 4_3:+48667827 None:intergenic
GTTAATGCTGATAATTTGGT+TGG 0.507509 4_3:-48666182 Msa0644610:three_prime_UTR
TGCAATTGGGTGGCAGGCGA+CGG 0.507970 4_3:-48666016 Msa0644610:three_prime_UTR
ACTCTCCGGCGCAAAATCAT+CGG 0.509928 4_3:+48667692 None:intergenic
CTCAAATTTCACATTAAAAG+CGG 0.510187 4_3:+48665945 None:intergenic
CCACTAGTGCTTGGCCTCAA+GGG 0.514000 4_3:+48665909 None:intergenic
ACTTCTCAAAGTATGCAATT+GGG 0.514264 4_3:-48666029 Msa0644610:three_prime_UTR
GTGGGTGATAATTTGTTGCA+TGG 0.515287 4_3:-48665881 Msa0644610:three_prime_UTR
TTCCAAAGTCGAATCCGAAA+GGG 0.516074 4_3:+48669065 None:intergenic
CACAGACTTTGCTTAGGGAA+GGG 0.523241 4_3:-48668898 Msa0644610:CDS
GAAGGGTTTAGTGTTAGAGC+TGG 0.524692 4_3:-48668881 Msa0644610:CDS
ACCAAAGTGGCTGTCACCAT+TGG 0.525290 4_3:-48667981 Msa0644610:CDS
ATGGCAAAAGTTCAGCTCAC+AGG 0.526351 4_3:-48666504 Msa0644610:CDS
ATCAAGTACATTGTAGGTTG+AGG 0.527543 4_3:+48667833 None:intergenic
ACCAATGGTGACAGCCACTT+TGG 0.529601 4_3:+48667980 None:intergenic
AAGGCAAAAGTTAAGCTCAC+AGG 0.530732 4_3:-48666606 Msa0644610:CDS
GCACAGACTTTGCTTAGGGA+AGG 0.531835 4_3:-48668899 Msa0644610:CDS
GGGATCAAAGAAGTCACATC+AGG 0.531840 4_3:+48669037 None:intergenic
AATAGACAAAGGTTGAGACT+TGG 0.532124 4_3:+48667779 None:intergenic
AACTAAGAAGATGGAAGAAG+AGG 0.532351 4_3:-48666759 Msa0644610:CDS
TAAGAGGACAGGCGAAGGCT+CGG 0.536519 4_3:-48666421 Msa0644610:CDS
CTCCAATTAAAGATACCTCA+AGG 0.539656 4_3:-48665736 Msa0644610:three_prime_UTR
TGGAAGTCCTGCAAGGAAGA+AGG 0.540638 4_3:-48668975 Msa0644610:CDS
AGTTGCCACCGTAAGAGGAC+AGG 0.545851 4_3:-48666432 Msa0644610:CDS
GCTTTCAAAACAAGAAGCAC+AGG 0.545968 4_3:-48666729 Msa0644610:CDS
TGCTGCAACAACTAAGAAGA+TGG 0.548642 4_3:-48666768 Msa0644610:CDS
CCACCAAGTCCACTAGTGCT+TGG 0.550044 4_3:+48665900 None:intergenic
TCGTCTTGCTTCTCAATACA+AGG 0.551686 4_3:-48668825 Msa0644610:intron
CACACAGGTTGCAGAAAACA+AGG 0.552585 4_3:-48667458 Msa0644610:intron
CCAAGCACTAGTGGACTTGG+TGG 0.553022 4_3:-48665900 Msa0644610:three_prime_UTR
GGAATTATCTTGAATAGAAG+AGG 0.556658 4_3:+48669404 None:intergenic
GCCGGTGCTACTGGTCAAGC+TGG 0.556959 4_3:-48668932 Msa0644610:CDS
GAAAGAGTGGGAACCATGGA+TGG 0.559889 4_3:+48669250 None:intergenic
TCCCTGCTAATCTGATTACA+TGG 0.562637 4_3:+48666094 None:intergenic
TTGATGATGACTAGTGGAAG+TGG 0.562771 4_3:-48666247 Msa0644610:exon
GCCGGAGAGTTCTTATAATG+TGG 0.563804 4_3:-48667679 Msa0644610:CDS
ATAGGTTGTGCAAGTGTACT+CGG 0.564585 4_3:-48667051 Msa0644610:intron
GTCCAGGATAGCATCGTTGG+TGG 0.569990 4_3:-48667497 Msa0644610:CDS
CTATTCCGGAAGATGGAAGA+AGG 0.577738 4_3:-48666868 Msa0644610:CDS
TTTCCAAAGTCGAATCCGAA+AGG 0.578036 4_3:+48669064 None:intergenic
AAAGTCCAGGATAGCATCGT+TGG 0.579546 4_3:-48667500 Msa0644610:CDS
TTTAATTGGAGGAGAACAGA+GGG 0.584320 4_3:+48665748 None:intergenic
GAGGTTAGGAAGGTATTTGG+TGG 0.585362 4_3:-48666296 Msa0644610:CDS
ATCTTAACTAGAACCATCCA+TGG 0.585603 4_3:-48669263 Msa0644610:exon
GAAACCGAAGGAGGTTAGGA+AGG 0.586267 4_3:-48666306 Msa0644610:CDS
ACCAGCTTGACCAGTAGCAC+CGG 0.589273 4_3:+48668931 None:intergenic
GGACTTCCAAATGACAAACC+TGG 0.590602 4_3:+48668989 None:intergenic
TTACATAGGTAACAAAGTCC+AGG 0.593556 4_3:-48667513 Msa0644610:intron
TCTATATTGATGATGACTAG+TGG 0.595458 4_3:-48666253 Msa0644610:exon
GAGGGAGTAGAAATGAGGGA+AGG 0.596880 4_3:+48665766 None:intergenic
AAAGAATTGGATGAAAGAGT+GGG 0.597103 4_3:+48669238 None:intergenic
TCAGATTATATCAAACGAAG+AGG 0.598598 4_3:-48668075 Msa0644610:intron
CACCGTAAGAGGACAGGCGA+AGG 0.599425 4_3:-48666426 Msa0644610:CDS
AGAAGATCAAGAGAAGGCAG+AGG 0.600588 4_3:-48666690 Msa0644610:CDS
AAAGATAGAGGAGAAACCGA+AGG 0.601183 4_3:-48666318 Msa0644610:CDS
AGCTAAAGAAGATCAAGAGA+AGG 0.604016 4_3:-48666696 Msa0644610:CDS
TACTTGCAAGGCATCTGACG+TGG 0.604597 4_3:+48667926 None:intergenic
ACCATTGGTCTCACAGAGAA+CGG 0.605549 4_3:-48667966 Msa0644610:CDS
TCCAATTAAAGATACCTCAA+GGG 0.607195 4_3:-48665735 Msa0644610:three_prime_UTR
CTTCGCCTGTCCTCTTACGG+TGG 0.611044 4_3:+48666427 None:intergenic
AGCAGCCTGAATTACTTGCA+AGG 0.614147 4_3:+48667914 None:intergenic
ACCGTTCTCTGTGAGACCAA+TGG 0.615314 4_3:+48667965 None:intergenic
ACCACATTATAAGAACTCTC+CGG 0.622153 4_3:+48667678 None:intergenic
CAGTGTGAGTAAACCAAAGG+AGG 0.623135 4_3:-48666348 Msa0644610:CDS
AAGCAGTGTGAGTAAACCAA+AGG 0.625751 4_3:-48666351 Msa0644610:CDS
AAGGAAGAAGGATCCTTCGA+CGG 0.630861 4_3:-48668963 Msa0644610:CDS
TGAGACAATCATGTCCCTTG+AGG 0.631251 4_3:+48665721 None:intergenic
TGTCATTTGGAAGTCCTGCA+AGG 0.633906 4_3:-48668982 Msa0644610:CDS
AAGAACTCTTGAATAGACAA+AGG 0.641968 4_3:+48667768 None:intergenic
GTATTTCGAATGCACCCTTG+AGG 0.642772 4_3:-48665923 Msa0644610:three_prime_UTR
AGTTCGTCTACACGCTTCAG+GGG 0.644617 4_3:+48667017 None:intergenic
AGAGAACGGTCCAGCAACTG+AGG 0.645643 4_3:-48667952 Msa0644610:CDS
AATAGGCAATGCAACCAAAG+TGG 0.654315 4_3:-48667994 Msa0644610:CDS
ATTGGAGAAAGCCAAAGCAG+AGG 0.656499 4_3:-48666828 Msa0644610:CDS
AGCAATCCAAAAGCCTGATG+AGG 0.656743 4_3:-48666474 Msa0644610:CDS
CTTTAATTGGAGGAGAACAG+AGG 0.659476 4_3:+48665747 None:intergenic
TCTCAAAGTATGCAATTGGG+TGG 0.668894 4_3:-48666026 Msa0644610:three_prime_UTR
AACGAATCAAGATCCTGATG+AGG 0.670962 4_3:-48666576 Msa0644610:CDS
GTCTTAGGCGAAGAAAACAC+CGG 0.671556 4_3:-48667654 Msa0644610:CDS
GGATGAAAGAGTGGGAACCA+TGG 0.674227 4_3:+48669246 None:intergenic
CAAGCACTAGTGGACTTGGT+GGG 0.675699 4_3:-48665899 Msa0644610:three_prime_UTR
TGATGTCTTCTCCAACACAC+AGG 0.677746 4_3:-48667473 Msa0644610:CDS
GATAGAGGAGAAACCGAAGG+AGG 0.690826 4_3:-48666315 Msa0644610:CDS
ATGGATAAACTCTGATTACG+TGG 0.694613 4_3:-48669455 Msa0644610:five_prime_UTR
TGATGAGGATGAGAACCCAA+AGG 0.696850 4_3:-48666459 Msa0644610:CDS
ACCATGTAATCAGATTAGCA+GGG 0.713703 4_3:-48666095 Msa0644610:three_prime_UTR
CATCGTAGATGACTGCAACG+TGG 0.714845 4_3:+48667874 None:intergenic
TAAGCAAAGTCTGTGCAATG+CGG 0.730043 4_3:+48668906 None:intergenic
GTCATCTACGATGAAAACAA+CGG 0.733428 4_3:-48667864 Msa0644610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATGAAATTTTTCAT+TGG - chr4_3:48667048-48667067 Msa0644610:CDS 10.0%
!! TTCTTAATCAATCATTAATT+TGG - chr4_3:48666389-48666408 Msa0644610:CDS 15.0%
!! AACATAGTAATGTTTATCTT+TGG + chr4_3:48665831-48665850 None:intergenic 20.0%
!! AATTTGGATTATTAATGATC+AGG - chr4_3:48666405-48666424 Msa0644610:CDS 20.0%
!!! AGAAAATAAGAGTATGTTTA+AGG + chr4_3:48666699-48666718 None:intergenic 20.0%
!! AATTTAATCTTTCAAACCTT+TGG + chr4_3:48666917-48666936 None:intergenic 20.0%
!! GGTTTGAAAGATTAAATTTA+AGG - chr4_3:48666919-48666938 Msa0644610:intron 20.0%
!! GATAAAAAAATTGAGTAAGT+AGG + chr4_3:48666952-48666971 None:intergenic 20.0%
!!! ACTCAATTTTTTTATCTAAC+AGG - chr4_3:48666956-48666975 Msa0644610:intron 20.0%
!!! AATTTTTCATTGGAGTTAAT+TGG - chr4_3:48667058-48667077 Msa0644610:intron 20.0%
!!! ATTTTTCATTGGAGTTAATT+GGG - chr4_3:48667059-48667078 Msa0644610:intron 20.0%
!! AATACTTATTGAGAAAATGA+TGG - chr4_3:48667638-48667657 Msa0644610:CDS 20.0%
!! AAACAATAGCTAAAATCAAA+TGG - chr4_3:48668074-48668093 Msa0644610:CDS 20.0%
!!! TGTTTTACAACATCAATAAT+AGG - chr4_3:48668219-48668238 Msa0644610:intron 20.0%
!!! CAATAATAGGTGAATAATTT+TGG - chr4_3:48668232-48668251 Msa0644610:intron 20.0%
!!! TAGAACATGTTTTTTGGTTT+GGG + chr4_3:48665861-48665880 None:intergenic 25.0%
!!! ATAGAACATGTTTTTTGGTT+TGG + chr4_3:48665862-48665881 None:intergenic 25.0%
!!! CAACTATAGAACATGTTTTT+TGG + chr4_3:48665867-48665886 None:intergenic 25.0%
! AATGTCTATGCTAAAAAATC+TGG - chr4_3:48666002-48666021 Msa0644610:three_prime_UTR 25.0%
! AACTCTAATAATAACCCTTT+CGG - chr4_3:48666098-48666117 Msa0644610:three_prime_UTR 25.0%
!! TTAATCACTGACATTTTCTT+TGG - chr4_3:48666534-48666553 Msa0644610:CDS 25.0%
! ATTTCATCACTAAACTCAAA+AGG - chr4_3:48666612-48666631 Msa0644610:CDS 25.0%
! TTTCATCACTAAACTCAAAA+GGG - chr4_3:48666613-48666632 Msa0644610:CDS 25.0%
!! TAAGAGTATGTTTAAGGAAA+AGG + chr4_3:48666693-48666712 None:intergenic 25.0%
! TCAATTAATTACACTTCTAG+AGG - chr4_3:48666718-48666737 Msa0644610:CDS 25.0%
! GAATGATAAAAGGATCAAAT+TGG - chr4_3:48666740-48666759 Msa0644610:CDS 25.0%
!! CCTAATATTTCTTTTTCCAT+GGG + chr4_3:48666854-48666873 None:intergenic 25.0%
!! TCCTAATATTTCTTTTTCCA+TGG + chr4_3:48666855-48666874 None:intergenic 25.0%
! AAATATTAGGAAGTTAGCTA+GGG - chr4_3:48666864-48666883 Msa0644610:CDS 25.0%
! TTATCTAACAGGTAATTTCA+TGG - chr4_3:48666967-48666986 Msa0644610:intron 25.0%
!! TTTTTCATTGGAGTTAATTG+GGG - chr4_3:48667060-48667079 Msa0644610:intron 25.0%
! AGTAAAGGAAGGTTAAAAAA+AGG + chr4_3:48667603-48667622 None:intergenic 25.0%
! ACAAATAAGAAAGTAAAGGA+AGG + chr4_3:48667614-48667633 None:intergenic 25.0%
! AGCAACAAATAAGAAAGTAA+AGG + chr4_3:48667618-48667637 None:intergenic 25.0%
! CTGAAAAAGTTTATAAACAG+TGG + chr4_3:48669205-48669224 None:intergenic 25.0%
! CTCAAATTTCACATTAAAAG+CGG + chr4_3:48669235-48669254 None:intergenic 25.0%
! CGATACAAAATCAATTTGTA+AGG - chr4_3:48669373-48669392 Msa0644610:five_prime_UTR 25.0%
TAGATATAGCGAATTGGATT+TGG + chr4_3:48665748-48665767 None:intergenic 30.0%
GGAATTATCTTGAATAGAAG+AGG + chr4_3:48665776-48665795 None:intergenic 30.0%
!! TAATCTAGTTTGGTGTTTGT+GGG + chr4_3:48665797-48665816 None:intergenic 30.0%
!! TTAATCTAGTTTGGTGTTTG+TGG + chr4_3:48665798-48665817 None:intergenic 30.0%
CAAACACCAAACTAGATTAA+CGG - chr4_3:48665798-48665817 Msa0644610:three_prime_UTR 30.0%
! GTAATGTTTATCTTTGGCTT+TGG + chr4_3:48665825-48665844 None:intergenic 30.0%
AAAGAATTGGATGAAAGAGT+GGG + chr4_3:48665942-48665961 None:intergenic 30.0%
TAAAGAATTGGATGAAAGAG+TGG + chr4_3:48665943-48665962 None:intergenic 30.0%
CTTAGGATGAGATAAAGAAT+TGG + chr4_3:48665955-48665974 None:intergenic 30.0%
!! CTCATCCTAAGTTGAATTTT+AGG - chr4_3:48665964-48665983 Msa0644610:three_prime_UTR 30.0%
TGCTTCCTAAAATTCAACTT+AGG + chr4_3:48665972-48665991 None:intergenic 30.0%
!! TGAATTTTAGGAAGCAAACA+AGG - chr4_3:48665976-48665995 Msa0644610:three_prime_UTR 30.0%
TCATTTCCATCATTTGGATT+AGG - chr4_3:48666032-48666051 Msa0644610:three_prime_UTR 30.0%
! TGGTCTTTTTCTTCATCTTT+TGG + chr4_3:48666062-48666081 None:intergenic 30.0%
GAAGAAAAAGACCAAACAAA+TGG - chr4_3:48666068-48666087 Msa0644610:three_prime_UTR 30.0%
AGTTTGATGAACCATTTGTT+TGG + chr4_3:48666082-48666101 None:intergenic 30.0%
!! GTATGCAACATCGTTTTTAT+AGG + chr4_3:48666433-48666452 None:intergenic 30.0%
TGCATACAATCTAGTATCAA+TGG - chr4_3:48666446-48666465 Msa0644610:CDS 30.0%
AATGACATAAACATCAACGT+CGG + chr4_3:48666587-48666606 None:intergenic 30.0%
! ACTTCTAGAGGAATGATAAA+AGG - chr4_3:48666730-48666749 Msa0644610:CDS 30.0%
TCTTGATAAAAAAGTTCCCA+TGG - chr4_3:48666835-48666854 Msa0644610:CDS 30.0%
CCCATGGAAAAAGAAATATT+AGG - chr4_3:48666851-48666870 Msa0644610:CDS 30.0%
GAAATATTAGGAAGTTAGCT+AGG - chr4_3:48666863-48666882 Msa0644610:CDS 30.0%
AATATTAGGAAGTTAGCTAG+GGG - chr4_3:48666865-48666884 Msa0644610:CDS 30.0%
! TTTGGAGCAAGAAATTACAT+GGG + chr4_3:48666899-48666918 None:intergenic 30.0%
CAACAATTAAAACATGACAC+TGG - chr4_3:48667012-48667031 Msa0644610:CDS 30.0%
TCAGATTATATCAAACGAAG+AGG - chr4_3:48667102-48667121 Msa0644610:intron 30.0%
GAAGATATTGTTGAAGAAAG+AGG + chr4_3:48667377-48667396 None:intergenic 30.0%
AAGAACTCTTGAATAGACAA+AGG + chr4_3:48667412-48667431 None:intergenic 30.0%
!!! GGTCAAACATGTTTTGATTA+AGG + chr4_3:48667467-48667486 None:intergenic 30.0%
TCTTATAATGTGGTTGTCTT+AGG - chr4_3:48667508-48667527 Msa0644610:CDS 30.0%
GAAAATGATGGTTGTTACAT+AGG - chr4_3:48667650-48667669 Msa0644610:CDS 30.0%
TTAGATTAATCCAATGACCA+AGG + chr4_3:48667842-48667861 None:intergenic 30.0%
!!! TTTGGTTTTTCTTCTAGTTG+AGG - chr4_3:48668250-48668269 Msa0644610:intron 30.0%
! TTTTCTTTACAGCACTATTC+CGG - chr4_3:48668295-48668314 Msa0644610:intron 30.0%
TTTCTCCAATATTTCAGCAT+AGG + chr4_3:48668339-48668358 None:intergenic 30.0%
!!! ATCTTTCTTTTTTCCTCCTT+TGG + chr4_3:48668845-48668864 None:intergenic 30.0%
!! TCTATATTGATGATGACTAG+TGG - chr4_3:48668924-48668943 Msa0644610:CDS 30.0%
CTGTGTTAATGCTGATAATT+TGG - chr4_3:48668991-48669010 Msa0644610:CDS 30.0%
GTTAATGCTGATAATTTGGT+TGG - chr4_3:48668995-48669014 Msa0644610:CDS 30.0%
ATAATTTGGTTGGACATGTA+TGG - chr4_3:48669005-48669024 Msa0644610:CDS 30.0%
! TTGCAAATTCCATTTTCGTT+GGG + chr4_3:48669122-48669141 None:intergenic 30.0%
! ATTGCAAATTCCATTTTCGT+TGG + chr4_3:48669123-48669142 None:intergenic 30.0%
AACTTCTCAAAGTATGCAAT+TGG - chr4_3:48669147-48669166 Msa0644610:CDS 30.0%
ACTTCTCAAAGTATGCAATT+GGG - chr4_3:48669148-48669167 Msa0644610:CDS 30.0%
TCCAATTAAAGATACCTCAA+GGG - chr4_3:48669442-48669461 Msa0644610:five_prime_UTR 30.0%
ATGGATAAACTCTGATTACG+TGG - chr4_3:48665722-48665741 Msa0644610:three_prime_UTR 35.0%
GTAAGCTAGATATAGCGAAT+TGG + chr4_3:48665754-48665773 None:intergenic 35.0%
TTTGGACCGTTAATCTAGTT+TGG + chr4_3:48665807-48665826 None:intergenic 35.0%
! AACAAAGAGTGTGAACTTGT+TGG - chr4_3:48665888-48665907 Msa0644610:three_prime_UTR 35.0%
ATCTTAACTAGAACCATCCA+TGG - chr4_3:48665914-48665933 Msa0644610:three_prime_UTR 35.0%
GTCTATGCTAAAAAATCTGG+AGG - chr4_3:48666005-48666024 Msa0644610:three_prime_UTR 35.0%
TATGCTAAAAAATCTGGAGG+AGG - chr4_3:48666008-48666027 Msa0644610:three_prime_UTR 35.0%
ATGCTAAAAAATCTGGAGGA+GGG - chr4_3:48666009-48666028 Msa0644610:three_prime_UTR 35.0%
! GGTTTTCCTAATCCAAATGA+TGG + chr4_3:48666041-48666060 None:intergenic 35.0%
!! TCAAATTGGCCTTTGTGTAA+TGG - chr4_3:48666754-48666773 Msa0644610:CDS 35.0%
ATTCATCAGCTGCATTTGAT+AGG + chr4_3:48666783-48666802 None:intergenic 35.0%
ATATTAGGAAGTTAGCTAGG+GGG - chr4_3:48666866-48666885 Msa0644610:CDS 35.0%
!! CTTTGGAGCAAGAAATTACA+TGG + chr4_3:48666900-48666919 None:intergenic 35.0%
CATGTAATTTCTTGCTCCAA+AGG - chr4_3:48666898-48666917 Msa0644610:intron 35.0%
GACTCAATAGCAAAAGCAAT+AGG - chr4_3:48667166-48667185 Msa0644610:intron 35.0%
GTCATCTACGATGAAAACAA+CGG - chr4_3:48667313-48667332 Msa0644610:intron 35.0%
ATCAAGTACATTGTAGGTTG+AGG + chr4_3:48667347-48667366 None:intergenic 35.0%
TCAACCTACAATGTACTTGA+TGG - chr4_3:48667346-48667365 Msa0644610:intron 35.0%
AATAGACAAAGGTTGAGACT+TGG + chr4_3:48667401-48667420 None:intergenic 35.0%
ACCACATTATAAGAACTCTC+CGG + chr4_3:48667502-48667521 None:intergenic 35.0%
TACTTTATAGTCGTTCGAAC+CGG + chr4_3:48667545-48667564 None:intergenic 35.0%
TTACATAGGTAACAAAGTCC+AGG - chr4_3:48667664-48667683 Msa0644610:CDS 35.0%
! GGTATCTGTTTTACATTAGC+TGG - chr4_3:48667740-48667759 Msa0644610:CDS 35.0%
ATATCTCGACCAAACAACTT+AGG - chr4_3:48667876-48667895 Msa0644610:CDS 35.0%
! GAAGCTTTTTGTTGACCAAT+AGG - chr4_3:48668108-48668127 Msa0644610:intron 35.0%
GAAAGCCTATGCTGAAATAT+TGG - chr4_3:48668331-48668350 Msa0644610:intron 35.0%
AACTAAGAAGATGGAAGAAG+AGG - chr4_3:48668418-48668437 Msa0644610:intron 35.0%
AGCTAAAGAAGATCAAGAGA+AGG - chr4_3:48668481-48668500 Msa0644610:intron 35.0%
! GGTAGAAGACATTTTGAACA+AGG - chr4_3:48668523-48668542 Msa0644610:intron 35.0%
! TGTTTAGTCACTGCTTTGTT+AGG + chr4_3:48668791-48668810 None:intergenic 35.0%
GGAGGAAAAAAGAAAGATAG+AGG - chr4_3:48668847-48668866 Msa0644610:CDS 35.0%
! AGATAGTCTCTTGTTTGAAC+AGG + chr4_3:48668907-48668926 None:intergenic 35.0%
!!! TGGACATGTATGGTTTTGTA+AGG - chr4_3:48669015-48669034 Msa0644610:CDS 35.0%
AACCATGTAATCAGATTAGC+AGG - chr4_3:48669081-48669100 Msa0644610:CDS 35.0%
ACCATGTAATCAGATTAGCA+GGG - chr4_3:48669082-48669101 Msa0644610:CDS 35.0%
! CAAGATTTTCCCAACGAAAA+TGG - chr4_3:48669110-48669129 Msa0644610:CDS 35.0%
TTTAATTGGAGGAGAACAGA+GGG + chr4_3:48669432-48669451 None:intergenic 35.0%
! CTTGAGGTATCTTTAATTGG+AGG + chr4_3:48669443-48669462 None:intergenic 35.0%
CTCCAATTAAAGATACCTCA+AGG - chr4_3:48669441-48669460 Msa0644610:five_prime_UTR 35.0%
! TCCCTTGAGGTATCTTTAAT+TGG + chr4_3:48669446-48669465 None:intergenic 35.0%
TTCCAAAGTCGAATCCGAAA+GGG + chr4_3:48666115-48666134 None:intergenic 40.0%
TTTCCAAAGTCGAATCCGAA+AGG + chr4_3:48666116-48666135 None:intergenic 40.0%
TGACTTCTTTGATCCCTGTT+GGG - chr4_3:48666147-48666166 Msa0644610:three_prime_UTR 40.0%
TCTTTGCCAGGTTTGTCATT+TGG - chr4_3:48666182-48666201 Msa0644610:three_prime_UTR 40.0%
TAAGCAAAGTCTGTGCAATG+CGG + chr4_3:48666274-48666293 None:intergenic 40.0%
CATTGCACAGACTTTGCTTA+GGG - chr4_3:48666274-48666293 Msa0644610:CDS 40.0%
ACTTGATTCTGCTCAGGAAT+TGG - chr4_3:48666328-48666347 Msa0644610:CDS 40.0%
TCGTCTTGCTTCTCAATACA+AGG - chr4_3:48666352-48666371 Msa0644610:CDS 40.0%
AGCTAGAGAGCAATACAAGA+AGG + chr4_3:48666652-48666671 None:intergenic 40.0%
GATAGGCTTCCATTACACAA+AGG + chr4_3:48666766-48666785 None:intergenic 40.0%
AAAACATGACACTGGACTGT+TGG - chr4_3:48667020-48667039 Msa0644610:CDS 40.0%
AATAGGCAATGCAACCAAAG+TGG - chr4_3:48667183-48667202 Msa0644610:intron 40.0%
AGATGCCTTGCAAGTAATTC+AGG - chr4_3:48667258-48667277 Msa0644610:intron 40.0%
GATGCCATCAAGTACATTGT+AGG + chr4_3:48667353-48667372 None:intergenic 40.0%
TCAAGAGTTCTTGCAGAAAG+TGG - chr4_3:48667420-48667439 Msa0644610:intron 40.0%
GTCTAGTAAGTCGATTAGCA+TGG - chr4_3:48667785-48667804 Msa0644610:CDS 40.0%
AACTCTGCACCTAAGTTGTT+TGG + chr4_3:48667888-48667907 None:intergenic 40.0%
AGTACACTTGCACAACCTAT+TGG + chr4_3:48668126-48668145 None:intergenic 40.0%
ATAGGTTGTGCAAGTGTACT+CGG - chr4_3:48668126-48668145 Msa0644610:intron 40.0%
!! GGTTTTTCTTCTAGTTGAGG+AGG - chr4_3:48668253-48668272 Msa0644610:intron 40.0%
TGCTGCAACAACTAAGAAGA+TGG - chr4_3:48668409-48668428 Msa0644610:intron 40.0%
! GCTTTCAAAACAAGAAGCAC+AGG - chr4_3:48668448-48668467 Msa0644610:intron 40.0%
AAGGCAAAAGTTAAGCTCAC+AGG - chr4_3:48668571-48668590 Msa0644610:intron 40.0%
AACGAATCAAGATCCTGATG+AGG - chr4_3:48668601-48668620 Msa0644610:intron 40.0%
! TTTGGTTTCTCATCCTCATC+AGG + chr4_3:48668617-48668636 None:intergenic 40.0%
TGAGAAACCAAAGTTGCAAC+CGG - chr4_3:48668625-48668644 Msa0644610:intron 40.0%
AAGCAGTGTGAGTAAACCAA+AGG - chr4_3:48668826-48668845 Msa0644610:CDS 40.0%
AAAGATAGAGGAGAAACCGA+AGG - chr4_3:48668859-48668878 Msa0644610:CDS 40.0%
AATACCTTCCTAACCTCCTT+CGG + chr4_3:48668878-48668897 None:intergenic 40.0%
!! AAGGAGGTTAGGAAGGTATT+TGG - chr4_3:48668878-48668897 Msa0644610:CDS 40.0%
!! TTGATGATGACTAGTGGAAG+TGG - chr4_3:48668930-48668949 Msa0644610:CDS 40.0%
TCCCTGCTAATCTGATTACA+TGG + chr4_3:48669086-48669105 None:intergenic 40.0%
TCTCAAAGTATGCAATTGGG+TGG - chr4_3:48669151-48669170 Msa0644610:CDS 40.0%
AGGCGACGGTTTATGAAATA+AGG - chr4_3:48669175-48669194 Msa0644610:CDS 40.0%
!! GTGGGTGATAATTTGTTGCA+TGG - chr4_3:48669296-48669315 Msa0644610:five_prime_UTR 40.0%
AACAGAGGGAGTAGAAATGA+GGG + chr4_3:48669418-48669437 None:intergenic 40.0%
CTTTAATTGGAGGAGAACAG+AGG + chr4_3:48669433-48669452 None:intergenic 40.0%
GGAGGGTCATTTCCATCATT+TGG - chr4_3:48666026-48666045 Msa0644610:three_prime_UTR 45.0%
AACCCTTTCGGATTCGACTT+TGG - chr4_3:48666110-48666129 Msa0644610:three_prime_UTR 45.0%
GGGATCAAAGAAGTCACATC+AGG + chr4_3:48666143-48666162 None:intergenic 45.0%
GTGACTTCTTTGATCCCTGT+TGG - chr4_3:48666146-48666165 Msa0644610:three_prime_UTR 45.0%
ATCCCTGTTGGGAGCAAAAA+CGG - chr4_3:48666158-48666177 Msa0644610:three_prime_UTR 45.0%
!! AACCGTTTTTGCTCCCAACA+GGG + chr4_3:48666163-48666182 None:intergenic 45.0%
AGCAAAAACGGTTCTTTGCC+AGG - chr4_3:48666170-48666189 Msa0644610:three_prime_UTR 45.0%
GGACTTCCAAATGACAAACC+TGG + chr4_3:48666191-48666210 None:intergenic 45.0%
! TGTCATTTGGAAGTCCTGCA+AGG - chr4_3:48666195-48666214 Msa0644610:three_prime_UTR 45.0%
AAGGAAGAAGGATCCTTCGA+CGG - chr4_3:48666214-48666233 Msa0644610:three_prime_UTR 45.0%
GCATTGCACAGACTTTGCTT+AGG - chr4_3:48666273-48666292 Msa0644610:CDS 45.0%
CACAGACTTTGCTTAGGGAA+GGG - chr4_3:48666279-48666298 Msa0644610:CDS 45.0%
GAAGGGTTTAGTGTTAGAGC+TGG - chr4_3:48666296-48666315 Msa0644610:CDS 45.0%
TCCTGAACTTGATTCTGCTC+AGG - chr4_3:48666322-48666341 Msa0644610:CDS 45.0%
TCCTGAGCAGAATCAAGTTC+AGG + chr4_3:48666326-48666345 None:intergenic 45.0%
CTAGTATCAATGGCGTGTGT+CGG - chr4_3:48666456-48666475 Msa0644610:CDS 45.0%
TAGTATCAATGGCGTGTGTC+GGG - chr4_3:48666457-48666476 Msa0644610:CDS 45.0%
! ACCATTGGTCTCACAGAGAA+CGG - chr4_3:48667211-48667230 Msa0644610:intron 45.0%
AGCAGCCTGAATTACTTGCA+AGG + chr4_3:48667266-48667285 None:intergenic 45.0%
! TTTGACCGATGATTTTGCGC+CGG - chr4_3:48667480-48667499 Msa0644610:CDS 45.0%
GCCGGAGAGTTCTTATAATG+TGG - chr4_3:48667498-48667517 Msa0644610:CDS 45.0%
GTCTTAGGCGAAGAAAACAC+CGG - chr4_3:48667523-48667542 Msa0644610:intron 45.0%
AAAGTCCAGGATAGCATCGT+TGG - chr4_3:48667677-48667696 Msa0644610:CDS 45.0%
TGATGTCTTCTCCAACACAC+AGG - chr4_3:48667704-48667723 Msa0644610:CDS 45.0%
! GTTTTCTGCAACCTGTGTGT+TGG + chr4_3:48667718-48667737 None:intergenic 45.0%
CACACAGGTTGCAGAAAACA+AGG - chr4_3:48667719-48667738 Msa0644610:CDS 45.0%
TTCAACTGCACCTTGGTCAT+TGG - chr4_3:48667829-48667848 Msa0644610:CDS 45.0%
AAGTTCGTCTACACGCTTCA+GGG + chr4_3:48668164-48668183 None:intergenic 45.0%
AAAGTTCGTCTACACGCTTC+AGG + chr4_3:48668165-48668184 None:intergenic 45.0%
! AGCGTGTAGACGAACTTTTC+AGG - chr4_3:48668167-48668186 Msa0644610:intron 45.0%
TACAGCACTATTCCGGAAGA+TGG - chr4_3:48668302-48668321 Msa0644610:intron 45.0%
CTATTCCGGAAGATGGAAGA+AGG - chr4_3:48668309-48668328 Msa0644610:intron 45.0%
GCTTTCCTTCTTCCATCTTC+CGG + chr4_3:48668317-48668336 None:intergenic 45.0%
ATTGGAGAAAGCCAAAGCAG+AGG - chr4_3:48668349-48668368 Msa0644610:intron 45.0%
AGAAGATCAAGAGAAGGCAG+AGG - chr4_3:48668487-48668506 Msa0644610:intron 45.0%
! AAGGCTAAAGCTTTTCGTGC+AGG - chr4_3:48668542-48668561 Msa0644610:intron 45.0%
! AGGCTAAAGCTTTTCGTGCA+GGG - chr4_3:48668543-48668562 Msa0644610:intron 45.0%
! CTTTTCGTGCAGGGTTTTCA+AGG - chr4_3:48668552-48668571 Msa0644610:intron 45.0%
! TTGCAACCGGCAAAAGGTTT+TGG - chr4_3:48668638-48668657 Msa0644610:intron 45.0%
!! GTTTTGGTGCAGGGTTTTCA+TGG - chr4_3:48668654-48668673 Msa0644610:intron 45.0%
ATGGCAAAAGTTCAGCTCAC+AGG - chr4_3:48668673-48668692 Msa0644610:intron 45.0%
AGCAATCCAAAAGCCTGATG+AGG - chr4_3:48668703-48668722 Msa0644610:intron 45.0%
! TCTCATCCTCATCAGGCTTT+TGG + chr4_3:48668712-48668731 None:intergenic 45.0%
! TTTGGGTTCTCATCCTCATC+AGG + chr4_3:48668719-48668738 None:intergenic 45.0%
TGATGAGGATGAGAACCCAA+AGG - chr4_3:48668718-48668737 Msa0644610:intron 45.0%
GGTTTACTCACACTGCTTCT+TGG + chr4_3:48668824-48668843 None:intergenic 45.0%
CAGTGTGAGTAAACCAAAGG+AGG - chr4_3:48668829-48668848 Msa0644610:CDS 45.0%
!! GAGGTTAGGAAGGTATTTGG+TGG - chr4_3:48668881-48668900 Msa0644610:CDS 45.0%
AAAGTATGCAATTGGGTGGC+AGG - chr4_3:48669155-48669174 Msa0644610:CDS 45.0%
GTATTTCGAATGCACCCTTG+AGG - chr4_3:48669254-48669273 Msa0644610:exon 45.0%
GAACAGAGGGAGTAGAAATG+AGG + chr4_3:48669419-48669438 None:intergenic 45.0%
TGAGACAATCATGTCCCTTG+AGG + chr4_3:48669459-48669478 None:intergenic 45.0%
!!! AACTTTTTTATAAAATATAT+AGG + chr4_3:48668006-48668025 None:intergenic 5.0%
GAAAGAGTGGGAACCATGGA+TGG + chr4_3:48665930-48665949 None:intergenic 50.0%
GGATGAAAGAGTGGGAACCA+TGG + chr4_3:48665934-48665953 None:intergenic 50.0%
!! GAACCGTTTTTGCTCCCAAC+AGG + chr4_3:48666164-48666183 None:intergenic 50.0%
TGGAAGTCCTGCAAGGAAGA+AGG - chr4_3:48666202-48666221 Msa0644610:three_prime_UTR 50.0%
GAAGGATCCTTCTTCCTTGC+AGG + chr4_3:48666212-48666231 None:intergenic 50.0%
! CCTTCGACGGTTTTTGTTGC+CGG - chr4_3:48666227-48666246 Msa0644610:three_prime_UTR 50.0%
!!! GTTTTTGTTGCCGGTGCTAC+TGG - chr4_3:48666236-48666255 Msa0644610:three_prime_UTR 50.0%
GCACAGACTTTGCTTAGGGA+AGG - chr4_3:48666278-48666297 Msa0644610:CDS 50.0%
TAGGAAGTTAGCTAGGGGGA+AGG - chr4_3:48666870-48666889 Msa0644610:CDS 50.0%
AGGAAGTTAGCTAGGGGGAA+GGG - chr4_3:48666871-48666890 Msa0644610:CDS 50.0%
ACCAAAGTGGCTGTCACCAT+TGG - chr4_3:48667196-48667215 Msa0644610:intron 50.0%
ACCAATGGTGACAGCCACTT+TGG + chr4_3:48667200-48667219 None:intergenic 50.0%
ACCGTTCTCTGTGAGACCAA+TGG + chr4_3:48667215-48667234 None:intergenic 50.0%
! TACTTGCAAGGCATCTGACG+TGG + chr4_3:48667254-48667273 None:intergenic 50.0%
CATCGTAGATGACTGCAACG+TGG + chr4_3:48667306-48667325 None:intergenic 50.0%
ACTCTCCGGCGCAAAATCAT+CGG + chr4_3:48667488-48667507 None:intergenic 50.0%
CCAAGGTGCAGTTGAAGAGA+TGG + chr4_3:48667825-48667844 None:intergenic 50.0%
CCATCTCTTCAACTGCACCT+TGG - chr4_3:48667822-48667841 Msa0644610:CDS 50.0%
AGTTCGTCTACACGCTTCAG+GGG + chr4_3:48668163-48668182 None:intergenic 50.0%
GAAAGCCAAAGCAGAGGAAG+AGG - chr4_3:48668355-48668374 Msa0644610:intron 50.0%
TCTTGCCTCTTCCTCTGCTT+TGG + chr4_3:48668363-48668382 None:intergenic 50.0%
GGCAAGAGTGGAAGCTGAAA+AGG - chr4_3:48668376-48668395 Msa0644610:intron 50.0%
!! CCTTTTGCCGGTTGCAACTT+TGG + chr4_3:48668635-48668654 None:intergenic 50.0%
CCAAAGTTGCAACCGGCAAA+AGG - chr4_3:48668632-48668651 Msa0644610:intron 50.0%
! CCTGCACCAAAACCTTTTGC+CGG + chr4_3:48668647-48668666 None:intergenic 50.0%
!! CGGCAAAAGGTTTTGGTGCA+GGG - chr4_3:48668645-48668664 Msa0644610:intron 50.0%
GATAGAGGAGAAACCGAAGG+AGG - chr4_3:48668862-48668881 Msa0644610:CDS 50.0%
AGGAGAAACCGAAGGAGGTT+AGG - chr4_3:48668867-48668886 Msa0644610:CDS 50.0%
GAAACCGAAGGAGGTTAGGA+AGG - chr4_3:48668871-48668890 Msa0644610:CDS 50.0%
!! CAAGCACTAGTGGACTTGGT+GGG - chr4_3:48669278-48669297 Msa0644610:five_prime_UTR 50.0%
GAGGGAGTAGAAATGAGGGA+AGG + chr4_3:48669414-48669433 None:intergenic 50.0%
CCGGCAACAAAAACCGTCGA+AGG + chr4_3:48666230-48666249 None:intergenic 55.0%
ACCAGCTTGACCAGTAGCAC+CGG + chr4_3:48666249-48666268 None:intergenic 55.0%
AGAGAACGGTCCAGCAACTG+AGG - chr4_3:48667225-48667244 Msa0644610:intron 55.0%
ATTCAGGCTGCTCAGCTAGC+AGG - chr4_3:48667274-48667293 Msa0644610:intron 55.0%
GTCCAGGATAGCATCGTTGG+TGG - chr4_3:48667680-48667699 Msa0644610:CDS 55.0%
AGCCACCAACGATGCTATCC+TGG + chr4_3:48667685-48667704 None:intergenic 55.0%
!! CACGCTTCAGGGGAGCATTT+GGG + chr4_3:48668153-48668172 None:intergenic 55.0%
!! ACACGCTTCAGGGGAGCATT+TGG + chr4_3:48668154-48668173 None:intergenic 55.0%
AGCAGAGGAAGAGGCAAGAG+TGG - chr4_3:48668364-48668383 Msa0644610:intron 55.0%
CAAGAGAAGGCAGAGGCAAC+TGG - chr4_3:48668494-48668513 Msa0644610:intron 55.0%
GGCAGAGGCAACTGGAACTT+CGG - chr4_3:48668502-48668521 Msa0644610:intron 55.0%
!! CCGGCAAAAGGTTTTGGTGC+AGG - chr4_3:48668644-48668663 Msa0644610:intron 55.0%
CGGTGGCAACTTGCACCTTT+GGG + chr4_3:48668736-48668755 None:intergenic 55.0%
ACGGTGGCAACTTGCACCTT+TGG + chr4_3:48668737-48668756 None:intergenic 55.0%
GTGCAAGTTGCCACCGTAAG+AGG - chr4_3:48668740-48668759 Msa0644610:intron 55.0%
AGTTGCCACCGTAAGAGGAC+AGG - chr4_3:48668745-48668764 Msa0644610:intron 55.0%
AGCCTTCGCCTGTCCTCTTA+CGG + chr4_3:48668756-48668775 None:intergenic 55.0%
TAAGAGGACAGGCGAAGGCT+CGG - chr4_3:48668756-48668775 Msa0644610:intron 55.0%
CCACTAGTGCTTGGCCTCAA+GGG + chr4_3:48669271-48669290 None:intergenic 55.0%
TCCACTAGTGCTTGGCCTCA+AGG + chr4_3:48669272-48669291 None:intergenic 55.0%
!! AGGCCAAGCACTAGTGGACT+TGG - chr4_3:48669274-48669293 Msa0644610:five_prime_UTR 55.0%
CCACCAAGTCCACTAGTGCT+TGG + chr4_3:48669280-48669299 None:intergenic 55.0%
!! CCAAGCACTAGTGGACTTGG+TGG - chr4_3:48669277-48669296 Msa0644610:five_prime_UTR 55.0%
GACGTGGAGACCTCAGTTGC+TGG + chr4_3:48667238-48667257 None:intergenic 60.0%
CTTCGCCTGTCCTCTTACGG+TGG + chr4_3:48668753-48668772 None:intergenic 60.0%
CACCGTAAGAGGACAGGCGA+AGG - chr4_3:48668751-48668770 Msa0644610:intron 60.0%
TGCAATTGGGTGGCAGGCGA+CGG - chr4_3:48669161-48669180 Msa0644610:CDS 60.0%
CCCTTGAGGCCAAGCACTAG+TGG - chr4_3:48669268-48669287 Msa0644610:five_prime_UTR 60.0%
!! GCCGGTGCTACTGGTCAAGC+TGG - chr4_3:48666245-48666264 Msa0644610:exon 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 48665705 48669494 48665705 ID=Msa0644610;Name=Msa0644610
chr4_3 mRNA 48665705 48669494 48665705 ID=Msa0644610-mRNA-1;Parent=Msa0644610;Name=Msa0644610-mRNA-1;_AED=0.01;_eAED=0.01;_QI=228|1|1|1|1|1|5|551|553
chr4_3 exon 48665705 48666892 48665705 ID=Msa0644610-mRNA-1:exon:11554;Parent=Msa0644610-mRNA-1
chr4_3 exon 48667011 48667069 48667011 ID=Msa0644610-mRNA-1:exon:11553;Parent=Msa0644610-mRNA-1
chr4_3 exon 48667459 48667527 48667459 ID=Msa0644610-mRNA-1:exon:11552;Parent=Msa0644610-mRNA-1
chr4_3 exon 48667638 48668093 48667638 ID=Msa0644610-mRNA-1:exon:11551;Parent=Msa0644610-mRNA-1
chr4_3 exon 48668826 48669494 48668826 ID=Msa0644610-mRNA-1:exon:11550;Parent=Msa0644610-mRNA-1
chr4_3 five_prime_UTR 48669267 48669494 48669267 ID=Msa0644610-mRNA-1:five_prime_utr;Parent=Msa0644610-mRNA-1
chr4_3 CDS 48668826 48669266 48668826 ID=Msa0644610-mRNA-1:cds;Parent=Msa0644610-mRNA-1
chr4_3 CDS 48667638 48668093 48667638 ID=Msa0644610-mRNA-1:cds;Parent=Msa0644610-mRNA-1
chr4_3 CDS 48667459 48667527 48667459 ID=Msa0644610-mRNA-1:cds;Parent=Msa0644610-mRNA-1
chr4_3 CDS 48667011 48667069 48667011 ID=Msa0644610-mRNA-1:cds;Parent=Msa0644610-mRNA-1
chr4_3 CDS 48666256 48666892 48666256 ID=Msa0644610-mRNA-1:cds;Parent=Msa0644610-mRNA-1
chr4_3 three_prime_UTR 48665705 48666255 48665705 ID=Msa0644610-mRNA-1:three_prime_utr;Parent=Msa0644610-mRNA-1
Gene Sequence

>Msa0644610

ATGGTTCCCACTCTTTCATCCAATTCTTTATCTCATCCTAAGTTGAATTTTAGGAAGCAAACAAGGTTCAATGTCTATGCTAAAAAATCTGGAGGAGGGTCATTTCCATCATTTGGATTAGGAAAACCAAAAGATGAAGAAAAAGACCAAACAAATGGTTCATCAAACTCTAATAATAACCCTTTCGGATTCGACTTTGGAAAATTGCCTGATGTGACTTCTTTGATCCCTGTTGGGAGCAAAAACGGTTCTTTGCCAGGTTTGTCATTTGGAAGTCCTGCAAGGAAGAAGGATCCTTCGACGGTTTTTGTTGCCGGTGCTACTGGTCAAGCTGGTATCCGCATTGCACAGACTTTGCTTAGGGAAGGGTTTAGTGTTAGAGCTGGTGTTCCTGAACTTGATTCTGCTCAGGAATTGGCTCGTCTTGCTTCTCAATACAAGATTATATCAAACGAAGAGGCAAAGCGTCTCAATGCTGTGCAGTCAAGCTTTGATGATGCAGACTCAATAGCAAAAGCAATAGGCAATGCAACCAAAGTGGCTGTCACCATTGGTCTCACAGAGAACGGTCCAGCAACTGAGGTCTCCACGTCAGATGCCTTGCAAGTAATTCAGGCTGCTCAGCTAGCAGGCGTAGACCACGTTGCAGTCATCTACGATGAAAACAACGGCGTCAGCACCTCAACCTACAATGTACTTGATGGCATCTCCTCTTTCTTCAACAATATCTTCTCCAAGTCTCAACCTTTGTCTATTCAAGAGTTCTTGCAGAAAGTGGTAGAAACAGATGTCAAATATACCTTAATCAAAACATGTTTGACCGATGATTTTGCGCCGGAGAGTTCTTATAATGTGGTTGTCTTAGGCGAAGAAAACACCGGTTCGAACGACTATAAAGTAACAAAGTCCAGGATAGCATCGTTGGTGGCTGATGTCTTCTCCAACACACAGGTTGCAGAAAACAAGGTTGTGCAAGTGTACTCGGACCCAAATGCTCCCCTGAAGCGTGTAGACGAACTTTTCAGCACTATTCCGGAAGATGGAAGAAGGAAAGCCTATGCTGAAATATTGGAGAAAGCCAAAGCAGAGGAAGAGGCAAGAGTGGAAGCTGAAAAGGCACGCGAAGCTGCTGCAACAACTAAGAAGATGGAAGAAGAGGCACTGAAGCTTTCAAAACAAGAAGCACAGGCTTCTAATCTAGCTAAAGAAGATCAAGAGAAGGCAGAGGCAACTGGAACTTCGGTAGAAGACATTTTGAACAAGGCTAAAGCTTTTCGTGCAGGGTTTTCAAGGCAAAAGTTAAGCTCACAGGTTGCTACAACGAATCAAGATCCTGATGAGGATGAGAAACCAAAGTTGCAACCGGCAAAAGGTTTTGGTGCAGGGTTTTCATGGCAAAAGTTCAGCTCACAGGTTGCTACAGCAATCCAAAAGCCTGATGAGGATGAGAACCCAAAGGTGCAAGTTGCCACCGTAAGAGGACAGGCGAAGGCTCGGAGTCTCATTCCTAACAAAGCAGTGACTAAACAAACAACAACTCCAAGAAGCAGTGTGAGTAAACCAAAGGAGGAAAAAAGAAAGATAGAGGAGAAACCGAAGGAGGTTAGGAAGGTATTTGGTGGCCTGTTCAAACAAGAGACTATCTATATTGATGATGACTAG

Protein sequence

>Msa0644610

MVPTLSSNSLSHPKLNFRKQTRFNVYAKKSGGGSFPSFGLGKPKDEEKDQTNGSSNSNNNPFGFDFGKLPDVTSLIPVGSKNGSLPGLSFGSPARKKDPSTVFVAGATGQAGIRIAQTLLREGFSVRAGVPELDSAQELARLASQYKIISNEEAKRLNAVQSSFDDADSIAKAIGNATKVAVTIGLTENGPATEVSTSDALQVIQAAQLAGVDHVAVIYDENNGVSTSTYNVLDGISSFFNNIFSKSQPLSIQEFLQKVVETDVKYTLIKTCLTDDFAPESSYNVVVLGEENTGSNDYKVTKSRIASLVADVFSNTQVAENKVVQVYSDPNAPLKRVDELFSTIPEDGRRKAYAEILEKAKAEEEARVEAEKAREAAATTKKMEEEALKLSKQEAQASNLAKEDQEKAEATGTSVEDILNKAKAFRAGFSRQKLSSQVATTNQDPDEDEKPKLQPAKGFGAGFSWQKFSSQVATAIQKPDEDENPKVQVATVRGQAKARSLIPNKAVTKQTTTPRSSVSKPKEEKRKIEEKPKEVRKVFGGLFKQETIYIDDD*