AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274890 MtrunA17_Chr2g0286411 96.605 324 8 2 1 323 1 322 0.0 643
Msa0274890 MtrunA17_Chr4g0052751 79.464 112 23 0 212 323 12 123 3.07e-63 196
Msa0274890 MtrunA17_Chr4g0052771 59.854 137 52 2 48 183 54 188 1.28e-51 169
Msa0274890 MtrunA17_Chr8g0346791 84.483 58 8 1 154 210 19 76 8.01e-28 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274890 AT2G39080.1 63.946 294 91 2 39 320 57 347 1.22e-133 384

Find 93 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGATGGCTTTAGAGAAAT+TGG 0.165423 2_3:+6725380 None:intergenic
TATTTCATGTCATTTATTTA+TGG 0.177612 2_3:-6721455 Msa0274890:three_prime_UTR
TATGGTTATCATTTCTCTTT+TGG 0.190253 2_3:-6721437 Msa0274890:three_prime_UTR
ATCGTTGGTCCTGGTGTTCT+TGG 0.239905 2_3:-6725257 Msa0274890:CDS
CCTTATGATTGTAACGATAA+TGG 0.258705 2_3:-6723621 Msa0274890:CDS
ATTCATTTGTTTGTTATTGA+TGG 0.266333 2_3:-6725507 Msa0274890:exon
TGGATTACCTTGGTGATCTT+AGG 0.305690 2_3:-6724769 Msa0274890:intron
TCTTCTCCTTCTCTTTCAAT+TGG 0.307326 2_3:-6725296 Msa0274890:CDS
GAAAATATTGTGCTCGAGTT+TGG 0.312631 2_3:-6723342 Msa0274890:CDS
CTTTAGAGAAATTGGGGAAT+TGG 0.315540 2_3:+6725388 None:intergenic
TCATGAAGAGTTGGTTCAAT+TGG 0.321265 2_3:-6724873 Msa0274890:CDS
GTATTAGTCCTGCTTTGAAT+TGG 0.338500 2_3:-6724850 Msa0274890:CDS
TTTAGAGAAATTGGGGAATT+GGG 0.340909 2_3:+6725389 None:intergenic
TCGGCTCCCACCCAACTTCT+TGG 0.350973 2_3:+6721761 None:intergenic
TGCTCCTCCTTATCAATCAT+TGG 0.356100 2_3:-6724789 Msa0274890:CDS
AAAGTTGAAATTTACTTTGA+AGG 0.365545 2_3:-6721569 Msa0274890:three_prime_UTR
GTGAGATATTGAAATTCAAA+TGG 0.366331 2_3:+6725327 None:intergenic
ATCTTCATCTTTCTCTTCCA+TGG 0.372647 2_3:-6725354 Msa0274890:CDS
GGGAAACTTATGGTCAGATT+TGG 0.376255 2_3:+6724826 None:intergenic
GAAGAGAAAGATGAAGATAA+AGG 0.391771 2_3:+6725359 None:intergenic
GTCGTTTGGTCGCTCATCAA+TGG 0.392509 2_3:-6725235 Msa0274890:CDS
TGTTTGTTATTGATGGCATT+AGG 0.402344 2_3:-6725500 Msa0274890:exon
GTGATGGCTTTAGAGAAATT+GGG 0.407211 2_3:+6725381 None:intergenic
GAATGATTAATCTTTGTTCC+CGG 0.407639 2_3:-6721412 Msa0274890:three_prime_UTR
TCCTGGTGTTCTTGGTCGTT+TGG 0.407798 2_3:-6725249 Msa0274890:CDS
CTCCTCCCAATTGGCACGAC+TGG 0.408761 2_3:+6723393 None:intergenic
GATACTCCAGTCGTGCCAAT+TGG 0.419650 2_3:-6723399 Msa0274890:CDS
CAATGACATAGGGAAACTTA+TGG 0.425090 2_3:+6724816 None:intergenic
GACCTTCTCATCGTTGGTCC+TGG 0.429079 2_3:-6725266 Msa0274890:CDS
GTGGTGGAGTTGAGAAGAAA+TGG 0.432736 2_3:+6725411 None:intergenic
CATGAAGAGTTGGTTCAATT+GGG 0.441809 2_3:-6724872 Msa0274890:CDS
GTTCTCGGGCTCCTCCCAAT+TGG 0.450558 2_3:+6723384 None:intergenic
ACTGAATCTCATACATTATG+AGG 0.452895 2_3:-6723113 Msa0274890:intron
TCAGGCAGGCTGCAGAATGC+TGG 0.455175 2_3:-6723683 Msa0274890:intron
TGAGATATTGAAATTCAAAT+GGG 0.461645 2_3:+6725328 None:intergenic
TGGTGGAGTTGAGAAGAAAT+GGG 0.463518 2_3:+6725412 None:intergenic
TTTAGAAGGACATCAGTTCT+CGG 0.472428 2_3:+6723369 None:intergenic
TTAGAAGGACATCAGTTCTC+GGG 0.474461 2_3:+6723370 None:intergenic
GTGATAATCATCCTTTGTCC+AGG 0.478529 2_3:-6722888 Msa0274890:intron
AAACGGTGTAAATGTGTTAG+TGG 0.480620 2_3:+6725440 None:intergenic
GCATGAAGAGAGTGTTGAAA+TGG 0.485200 2_3:+6725468 None:intergenic
ATGAGATTCAGTACGTGATC+AGG 0.489741 2_3:+6723124 None:intergenic
CACACTTACTATTTAGAGAA+GGG 0.494029 2_3:-6723163 Msa0274890:CDS
TATCAATCATTGGATTACCT+TGG 0.501321 2_3:-6724779 Msa0274890:CDS
ATTGAAAGAGAAGGAGAAGA+AGG 0.501906 2_3:+6725299 None:intergenic
CAAAGATCTCACTCAAAAGT+TGG 0.502049 2_3:+6721700 None:intergenic
ATACTCCAGTCGTGCCAATT+GGG 0.502069 2_3:-6723398 Msa0274890:CDS
CCATTATCGTTACAATCATA+AGG 0.503939 2_3:+6723621 None:intergenic
TACTGATCATCATGAAGAGT+TGG 0.507041 2_3:-6724882 Msa0274890:CDS
GAAATTGGGGAATTGGGTGG+TGG 0.511531 2_3:+6725395 None:intergenic
AAAGATGAAGATAAAGGTGA+TGG 0.514258 2_3:+6725365 None:intergenic
AGAGAAATTGGGGAATTGGG+TGG 0.519135 2_3:+6725392 None:intergenic
AGGTAATCCAATGATTGATA+AGG 0.521831 2_3:+6724782 None:intergenic
TGATGGCTTTAGAGAAATTG+GGG 0.526292 2_3:+6725382 None:intergenic
AATATTGTGCTCGAGTTTGG+TGG 0.533294 2_3:-6723339 Msa0274890:intron
CTTCAAAATTGCAACGGAGA+GGG 0.536306 2_3:+6722942 None:intergenic
CAGGCTGCAGAATGCTGGAA+TGG 0.537544 2_3:-6723678 Msa0274890:CDS
AGGAGCACATACAATGACAT+AGG 0.541031 2_3:+6724805 None:intergenic
ATGGATCTAGTCGACAAAAG+TGG 0.544166 2_3:-6722032 Msa0274890:CDS
AACTCGCCAAGAAGTTGGGT+GGG 0.553451 2_3:-6721767 Msa0274890:CDS
GCAGGAACTGATGATCCTCT+TGG 0.554847 2_3:-6721811 Msa0274890:intron
GAAATTCAAATGGGTAGCCA+TGG 0.559481 2_3:+6725337 None:intergenic
TTGTTTCTTCAAAATTGCAA+CGG 0.560832 2_3:+6722936 None:intergenic
ACCAAACGACCAAGAACACC+AGG 0.561950 2_3:+6725248 None:intergenic
GATTTGGTCCAATTCAAAGC+AGG 0.563850 2_3:+6724842 None:intergenic
GGTCGCTCATCAATGGCGGC+AGG 0.565178 2_3:-6725228 Msa0274890:intron
ACACACTTACTATTTAGAGA+AGG 0.569345 2_3:-6723164 Msa0274890:CDS
CACCAGGACCAACGATGAGA+AGG 0.573449 2_3:+6725264 None:intergenic
TAATCCAATGATTGATAAGG+AGG 0.577326 2_3:+6724785 None:intergenic
CAACATGACCTTCTCATCGT+TGG 0.580731 2_3:-6725272 Msa0274890:CDS
TGGATCTAGTCGACAAAAGT+GGG 0.582143 2_3:-6722031 Msa0274890:CDS
TCTATTGAATCAGGAACATG+AGG 0.585010 2_3:-6724933 Msa0274890:intron
ACACTTACTATTTAGAGAAG+GGG 0.585739 2_3:-6723162 Msa0274890:CDS
TTGTTATTGATGGCATTAGG+AGG 0.586805 2_3:-6725497 Msa0274890:exon
GCAGAATGCTGGAATGGAGA+AGG 0.593499 2_3:-6723672 Msa0274890:CDS
TGTTGTCCAATTGAAAGAGA+AGG 0.599252 2_3:+6725290 None:intergenic
AAACTCGCCAAGAAGTTGGG+TGG 0.604194 2_3:-6721768 Msa0274890:CDS
GGAGCACATACAATGACATA+GGG 0.607743 2_3:+6724806 None:intergenic
GTGAACAATGAACATTGTCA+AGG 0.609453 2_3:-6721547 Msa0274890:three_prime_UTR
GGTGGAGTTGAGAAGAAATG+GGG 0.613805 2_3:+6725413 None:intergenic
TGAGCAAAGCTAGAGTACTT+CGG 0.623491 2_3:+6721742 None:intergenic
CTCCAGTCGTGCCAATTGGG+AGG 0.623505 2_3:-6723395 Msa0274890:CDS
TCTTCAAAATTGCAACGGAG+AGG 0.627129 2_3:+6722941 None:intergenic
TTGTTCAATCTCTTACCAAG+AGG 0.630106 2_3:+6721796 None:intergenic
CGATAATGGTTTATGCGATG+AGG 0.634674 2_3:-6723607 Msa0274890:intron
AAATCACCTAACCTGGACAA+AGG 0.653574 2_3:+6722877 None:intergenic
GGTGTAAATGTGTTAGTGGT+TGG 0.653759 2_3:+6725444 None:intergenic
GTTTGGTCGCTCATCAATGG+CGG 0.654822 2_3:-6725232 Msa0274890:CDS
GTGGAGTTGAGAAGAAATGG+GGG 0.662811 2_3:+6725414 None:intergenic
TCAAGGTATAATACTACACA+AGG 0.674883 2_3:-6721530 Msa0274890:three_prime_UTR
AAGTTGGTCATAGAGTCTCA+AGG 0.697220 2_3:+6721716 None:intergenic
CTATTGAATCAGGAACATGA+GGG 0.710683 2_3:-6724932 Msa0274890:intron
TTGCTCACCTAAGATCACCA+AGG 0.722733 2_3:+6724762 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTCTAATATATTCAT+AGG - chr2_3:6721830-6721849 Msa0274890:intron 10.0%
!!! TGATAAATATTTGATATTTT+AGG + chr2_3:6722546-6722565 None:intergenic 10.0%
!! ATTAAAACTTAAAAACTTAT+GGG + chr2_3:6724069-6724088 None:intergenic 10.0%
!! AATTAAAACTTAAAAACTTA+TGG + chr2_3:6724070-6724089 None:intergenic 10.0%
!!! TTTTAAGTTTTAATTTATGA+TGG - chr2_3:6724075-6724094 Msa0274890:intron 10.0%
!! TATATATTAAAATACAGACT+TGG + chr2_3:6722448-6722467 None:intergenic 15.0%
!!! TCTTTTTTCATATGTATTAT+TGG - chr2_3:6722829-6722848 Msa0274890:intron 15.0%
!!! TTGTTTAAATTTGTTTCAAT+TGG - chr2_3:6723377-6723396 Msa0274890:CDS 15.0%
!!! AATATTTTCTTATCTACTTA+TGG - chr2_3:6723882-6723901 Msa0274890:intron 15.0%
!! ATTTAAAAAAGCAAATAGAA+AGG + chr2_3:6724822-6724841 None:intergenic 15.0%
!!! TATTTCATGTCATTTATTTA+TGG - chr2_3:6725465-6725484 Msa0274890:CDS 15.0%
!!! ATTCATTTGTTTGTTATTGA+TGG - chr2_3:6721413-6721432 Msa0274890:three_prime_UTR 20.0%
!! TGAGATATTGAAATTCAAAT+GGG + chr2_3:6721595-6721614 None:intergenic 20.0%
!! TTCTAATATATTCATAGGAT+AGG - chr2_3:6721835-6721854 Msa0274890:intron 20.0%
!!! TTTTAATTTTCCTGAAATCA+TGG - chr2_3:6721887-6721906 Msa0274890:intron 20.0%
!!! TTAATCCTTTAATTTGTAGT+TGG - chr2_3:6722197-6722216 Msa0274890:intron 20.0%
!! GATGATCAATTAAGTATAAA+GGG + chr2_3:6722326-6722345 None:intergenic 20.0%
!! TGATGATCAATTAAGTATAA+AGG + chr2_3:6722327-6722346 None:intergenic 20.0%
!! AACATGATATTATATTCTCA+TGG + chr2_3:6722507-6722526 None:intergenic 20.0%
!!! CATTCTTTGATGATAATATT+TGG - chr2_3:6722926-6722945 Msa0274890:CDS 20.0%
!!! TATTTCTGTTATGTTTATAG+TGG - chr2_3:6723693-6723712 Msa0274890:intron 20.0%
!!! TTTTAATACAAAGAAGGTAA+AGG - chr2_3:6723730-6723749 Msa0274890:intron 20.0%
!! GTAAGGAATAAATTTCAAAA+GGG + chr2_3:6724119-6724138 None:intergenic 20.0%
!! AGTAAGGAATAAATTTCAAA+AGG + chr2_3:6724120-6724139 None:intergenic 20.0%
!! TTAAAATATCGTATTTGACA+TGG + chr2_3:6724236-6724255 None:intergenic 20.0%
!! TTAACAAAAATACAGATGTT+TGG - chr2_3:6724252-6724271 Msa0274890:intron 20.0%
!!! TTAATTTTGACTCTAAACAT+CGG - chr2_3:6724294-6724313 Msa0274890:intron 20.0%
!!! ATCATTTTCAATTTAACTGT+TGG - chr2_3:6724690-6724709 Msa0274890:intron 20.0%
!! ATGTTTCATTAAATGTTGTT+TGG + chr2_3:6724991-6725010 None:intergenic 20.0%
!!! TTTTTTCTTTTCTTTTCTTG+AGG - chr2_3:6725035-6725054 Msa0274890:intron 20.0%
!!! ATTTTATTTACAATGTCTCA+TGG + chr2_3:6725277-6725296 None:intergenic 20.0%
!! AAAGTTGAAATTTACTTTGA+AGG - chr2_3:6725351-6725370 Msa0274890:CDS 20.0%
! GTGAGATATTGAAATTCAAA+TGG + chr2_3:6721596-6721615 None:intergenic 25.0%
!!! TTCCTAGATTTAGTTTTTAC+AGG - chr2_3:6722628-6722647 Msa0274890:intron 25.0%
!!! TCCTAGATTTAGTTTTTACA+GGG - chr2_3:6722629-6722648 Msa0274890:intron 25.0%
! CTTATGATTGACTAATACAA+TGG + chr2_3:6722707-6722726 None:intergenic 25.0%
! ATCATGTAAAACCTTAAGAT+TGG + chr2_3:6722991-6723010 None:intergenic 25.0%
! TTATTCTAAACTTCTGTGTT+TGG - chr2_3:6723202-6723221 Msa0274890:intron 25.0%
! CAAATATTTGAAGAAAGAGA+GGG + chr2_3:6723360-6723379 None:intergenic 25.0%
! ACAAATATTTGAAGAAAGAG+AGG + chr2_3:6723361-6723380 None:intergenic 25.0%
!! TGTTTCAATTGGTTAATTTG+TGG - chr2_3:6723388-6723407 Msa0274890:CDS 25.0%
! TGATAAAACTGAATATGATG+AGG + chr2_3:6723434-6723453 None:intergenic 25.0%
!!! ATTCAGTTTTATCACAATGT+AGG - chr2_3:6723440-6723459 Msa0274890:intron 25.0%
! AGATTTACTTACTTCTATTC+AGG - chr2_3:6723499-6723518 Msa0274890:intron 25.0%
!!! CAATATTTTCTGCTTTTAGA+AGG + chr2_3:6723568-6723587 None:intergenic 25.0%
! CTTCTTTGTATTAAAAGTCA+AGG + chr2_3:6723726-6723745 None:intergenic 25.0%
!! CTTGACTTTTAATACAAAGA+AGG - chr2_3:6723724-6723743 Msa0274890:intron 25.0%
!! TTGTTTCTTCAAAATTGCAA+CGG + chr2_3:6723987-6724006 None:intergenic 25.0%
!!! ATTTTGAAGAAACAATTTCG+TGG - chr2_3:6723992-6724011 Msa0274890:intron 25.0%
!! GCAAATTTGTTTGGTTAAAT+TGG - chr2_3:6724579-6724598 Msa0274890:intron 25.0%
!! TATTTTGCCTTTGAACATTT+TGG - chr2_3:6724852-6724871 Msa0274890:CDS 25.0%
!! TATGGTTATCATTTCTCTTT+TGG - chr2_3:6725483-6725502 Msa0274890:CDS 25.0%
!! TGTTTGTTATTGATGGCATT+AGG - chr2_3:6721420-6721439 Msa0274890:three_prime_UTR 30.0%
TTTAGAGAAATTGGGGAATT+GGG + chr2_3:6721534-6721553 None:intergenic 30.0%
AAAGATGAAGATAAAGGTGA+TGG + chr2_3:6721558-6721577 None:intergenic 30.0%
GAAGAGAAAGATGAAGATAA+AGG + chr2_3:6721564-6721583 None:intergenic 30.0%
!!! AGTTGTTGACACTTATTTTG+AGG - chr2_3:6721798-6721817 Msa0274890:CDS 30.0%
! TTTTCCTGAAATCATGGAAT+TGG - chr2_3:6721893-6721912 Msa0274890:intron 30.0%
AAATCATGGAATTGGAATGT+TGG - chr2_3:6721901-6721920 Msa0274890:intron 30.0%
AATCATGGAATTGGAATGTT+GGG - chr2_3:6721902-6721921 Msa0274890:intron 30.0%
! ACATGTGTTTCTATTGAATC+AGG - chr2_3:6721978-6721997 Msa0274890:intron 30.0%
TAATCCAATGATTGATAAGG+AGG + chr2_3:6722138-6722157 None:intergenic 30.0%
AGGTAATCCAATGATTGATA+AGG + chr2_3:6722141-6722160 None:intergenic 30.0%
TATCAATCATTGGATTACCT+TGG - chr2_3:6722141-6722160 Msa0274890:intron 30.0%
!! TCCTTTAATTTGTAGTTGGT+AGG - chr2_3:6722201-6722220 Msa0274890:intron 30.0%
TCCTACCAACTACAAATTAA+AGG + chr2_3:6722205-6722224 None:intergenic 30.0%
TATAAAGGGTTGTCAAATAG+CGG + chr2_3:6722312-6722331 None:intergenic 30.0%
!!! TACATGAGTTGGTTTTTTGA+GGG + chr2_3:6722593-6722612 None:intergenic 30.0%
TAAATCTAGGAAGACATTAC+GGG + chr2_3:6722620-6722639 None:intergenic 30.0%
CTAAATCTAGGAAGACATTA+CGG + chr2_3:6722621-6722640 None:intergenic 30.0%
!!! CCTAGATTTAGTTTTTACAG+GGG - chr2_3:6722630-6722649 Msa0274890:intron 30.0%
ACATATATGTATCTTAGACG+CGG - chr2_3:6722759-6722778 Msa0274890:intron 30.0%
TCACATAAGTCACAAAAGAA+AGG + chr2_3:6722786-6722805 None:intergenic 30.0%
!! TTCATTTTAGCGTATCTGTA+TGG - chr2_3:6722952-6722971 Msa0274890:CDS 30.0%
!! TCATTTTAGCGTATCTGTAT+GGG - chr2_3:6722953-6722972 Msa0274890:CDS 30.0%
TAATGATTCCTCCAATCTTA+AGG - chr2_3:6722977-6722996 Msa0274890:intron 30.0%
ATGTAAAACCTTAAGATTGG+AGG + chr2_3:6722988-6723007 None:intergenic 30.0%
CCATTATCGTTACAATCATA+AGG + chr2_3:6723302-6723321 None:intergenic 30.0%
CCTTATGATTGTAACGATAA+TGG - chr2_3:6723299-6723318 Msa0274890:intron 30.0%
!! ATTGGTTAATTTGTGGCATT+AGG - chr2_3:6723395-6723414 Msa0274890:CDS 30.0%
!! TTAATGGAACTTTGAAATCC+TGG + chr2_3:6723660-6723679 None:intergenic 30.0%
TCAAAGTTCCATTAATCTTG+TGG - chr2_3:6723665-6723684 Msa0274890:CDS 30.0%
ATAACCAACCACAAGATTAA+TGG + chr2_3:6723676-6723695 None:intergenic 30.0%
ACACACTTACTATTTAGAGA+AGG - chr2_3:6723756-6723775 Msa0274890:intron 30.0%
CACACTTACTATTTAGAGAA+GGG - chr2_3:6723757-6723776 Msa0274890:intron 30.0%
ACACTTACTATTTAGAGAAG+GGG - chr2_3:6723758-6723777 Msa0274890:intron 30.0%
ACTGAATCTCATACATTATG+AGG - chr2_3:6723807-6723826 Msa0274890:intron 30.0%
! TTTATGATGGAGACCATAAT+TGG - chr2_3:6724088-6724107 Msa0274890:intron 30.0%
TGACATGGACAAAATTCATA+TGG + chr2_3:6724221-6724240 None:intergenic 30.0%
! TAAAGAGTAGCTTTTGTGAT+AGG - chr2_3:6724332-6724351 Msa0274890:intron 30.0%
!! GACATGATTTTGAAAGGAAT+TGG + chr2_3:6724454-6724473 None:intergenic 30.0%
AGATATTTGAGTGTGTGTTT+GGG + chr2_3:6724484-6724503 None:intergenic 30.0%
AAAAAGTTCGAGAAATTCAC+AGG - chr2_3:6724921-6724940 Msa0274890:CDS 30.0%
!! AACTTTTGAGTGAGATCTTT+GGG - chr2_3:6725222-6725241 Msa0274890:intron 30.0%
TCAAGGTATAATACTACACA+AGG - chr2_3:6725390-6725409 Msa0274890:CDS 30.0%
! TTGTTATTGATGGCATTAGG+AGG - chr2_3:6721423-6721442 Msa0274890:three_prime_UTR 35.0%
AAACGGTGTAAATGTGTTAG+TGG + chr2_3:6721483-6721502 None:intergenic 35.0%
! CTTTAGAGAAATTGGGGAAT+TGG + chr2_3:6721535-6721554 None:intergenic 35.0%
!! TGATGGCTTTAGAGAAATTG+GGG + chr2_3:6721541-6721560 None:intergenic 35.0%
!! GTGATGGCTTTAGAGAAATT+GGG + chr2_3:6721542-6721561 None:intergenic 35.0%
ATCTTCATCTTTCTCTTCCA+TGG - chr2_3:6721566-6721585 Msa0274890:three_prime_UTR 35.0%
ATTGAAAGAGAAGGAGAAGA+AGG + chr2_3:6721624-6721643 None:intergenic 35.0%
TCTTCTCCTTCTCTTTCAAT+TGG - chr2_3:6721624-6721643 Msa0274890:three_prime_UTR 35.0%
TGTTGTCCAATTGAAAGAGA+AGG + chr2_3:6721633-6721652 None:intergenic 35.0%
CATTCCAATTCCATGATTTC+AGG + chr2_3:6721900-6721919 None:intergenic 35.0%
TCTATTGAATCAGGAACATG+AGG - chr2_3:6721987-6722006 Msa0274890:intron 35.0%
CTATTGAATCAGGAACATGA+GGG - chr2_3:6721988-6722007 Msa0274890:intron 35.0%
TACTGATCATCATGAAGAGT+TGG - chr2_3:6722038-6722057 Msa0274890:CDS 35.0%
! TCATGAAGAGTTGGTTCAAT+TGG - chr2_3:6722047-6722066 Msa0274890:intron 35.0%
! CATGAAGAGTTGGTTCAATT+GGG - chr2_3:6722048-6722067 Msa0274890:intron 35.0%
! GTATTAGTCCTGCTTTGAAT+TGG - chr2_3:6722070-6722089 Msa0274890:intron 35.0%
CAATGACATAGGGAAACTTA+TGG + chr2_3:6722107-6722126 None:intergenic 35.0%
ATTTGACAACAATGCCACAA+TGG - chr2_3:6722372-6722391 Msa0274890:intron 35.0%
!!! GTACATGAGTTGGTTTTTTG+AGG + chr2_3:6722594-6722613 None:intergenic 35.0%
CCCCTGTAAAAACTAAATCT+AGG + chr2_3:6722633-6722652 None:intergenic 35.0%
!!! TTTAGTTTTTACAGGGGTGT+TGG - chr2_3:6722636-6722655 Msa0274890:intron 35.0%
ATGCTTGCTCAAAATTCTCT+TGG - chr2_3:6722888-6722907 Msa0274890:intron 35.0%
TGCTTGCTCAAAATTCTCTT+GGG - chr2_3:6722889-6722908 Msa0274890:CDS 35.0%
!! CATTTTAGCGTATCTGTATG+GGG - chr2_3:6722954-6722973 Msa0274890:CDS 35.0%
TAACCGTGATATGAGAATTC+AGG + chr2_3:6723109-6723128 None:intergenic 35.0%
CTAAATGCTGTATTACTGCA+AGG + chr2_3:6723144-6723163 None:intergenic 35.0%
CTTGCAGTAATACAGCATTT+AGG - chr2_3:6723142-6723161 Msa0274890:CDS 35.0%
!! CAGCATTTAGGATTTTGCTT+AGG - chr2_3:6723154-6723173 Msa0274890:CDS 35.0%
TTTAGAAGGACATCAGTTCT+CGG + chr2_3:6723554-6723573 None:intergenic 35.0%
GAAAATATTGTGCTCGAGTT+TGG - chr2_3:6723578-6723597 Msa0274890:intron 35.0%
!!! GGCAAATTGTGGTTTTGAAA+AGG + chr2_3:6723639-6723658 None:intergenic 35.0%
TTTCAAAACCACAATTTGCC+AGG - chr2_3:6723639-6723658 Msa0274890:CDS 35.0%
! TTTGAAATCCTGGCAAATTG+TGG + chr2_3:6723650-6723669 None:intergenic 35.0%
AGTTCCATTAATCTTGTGGT+TGG - chr2_3:6723669-6723688 Msa0274890:CDS 35.0%
GTTGAACATTTCGTCTAATG+TGG - chr2_3:6723931-6723950 Msa0274890:intron 35.0%
! TAATGTGGCTTTTCTAAACC+AGG - chr2_3:6723946-6723965 Msa0274890:intron 35.0%
! ATTTCGTGGACGAATTTTCT+TGG - chr2_3:6724006-6724025 Msa0274890:intron 35.0%
! TTTCGTGGACGAATTTTCTT+GGG - chr2_3:6724007-6724026 Msa0274890:intron 35.0%
CAAAAGGGAAGAACCAATTA+TGG + chr2_3:6724104-6724123 None:intergenic 35.0%
!! CAAGTAAGTTGATCTTCACT+CGG + chr2_3:6724168-6724187 None:intergenic 35.0%
GATCAACTTACTTGAAGAGT+TGG - chr2_3:6724174-6724193 Msa0274890:intron 35.0%
GATGTTTGGTTATAAGTGTC+AGG - chr2_3:6724266-6724285 Msa0274890:intron 35.0%
! GAGCAAGACATGATTTTGAA+AGG + chr2_3:6724460-6724479 None:intergenic 35.0%
GAGATATTTGAGTGTGTGTT+TGG + chr2_3:6724485-6724504 None:intergenic 35.0%
TCATCACATGATTCAACAGT+TGG + chr2_3:6724551-6724570 None:intergenic 35.0%
! ATCATGCAGGCAAATTTGTT+TGG - chr2_3:6724570-6724589 Msa0274890:intron 35.0%
AAAGAAAGACACAACTCAAG+AGG + chr2_3:6724798-6724817 None:intergenic 35.0%
GGAATGATGCTTTCACAATT+AGG + chr2_3:6725073-6725092 None:intergenic 35.0%
CCTGCGAACAAAAATTACAA+AGG + chr2_3:6725094-6725113 None:intergenic 35.0%
! CCTTTGTAATTTTTGTTCGC+AGG - chr2_3:6725091-6725110 Msa0274890:intron 35.0%
TTGTTCAATCTCTTACCAAG+AGG + chr2_3:6725127-6725146 None:intergenic 35.0%
CAAAGATCTCACTCAAAAGT+TGG + chr2_3:6725223-6725242 None:intergenic 35.0%
!! CAACTTTTGAGTGAGATCTT+TGG - chr2_3:6725221-6725240 Msa0274890:intron 35.0%
!! ACTTTTGAGTGAGATCTTTG+GGG - chr2_3:6725223-6725242 Msa0274890:intron 35.0%
! AACTTTTGCTTCATGTAGAG+TGG + chr2_3:6725337-6725356 None:intergenic 35.0%
GTGAACAATGAACATTGTCA+AGG - chr2_3:6725373-6725392 Msa0274890:CDS 35.0%
!! GCATGAAGAGAGTGTTGAAA+TGG + chr2_3:6721455-6721474 None:intergenic 40.0%
GGTGTAAATGTGTTAGTGGT+TGG + chr2_3:6721479-6721498 None:intergenic 40.0%
AGAAGAAATGGGGGTTGAAA+CGG + chr2_3:6721500-6721519 None:intergenic 40.0%
TGGTGGAGTTGAGAAGAAAT+GGG + chr2_3:6721511-6721530 None:intergenic 40.0%
!! GGTGATGGCTTTAGAGAAAT+TGG + chr2_3:6721543-6721562 None:intergenic 40.0%
GAAATTCAAATGGGTAGCCA+TGG + chr2_3:6721586-6721605 None:intergenic 40.0%
! CATGAGGGTAGTCAAGTTTT+TGG - chr2_3:6722003-6722022 Msa0274890:CDS 40.0%
! GATTTGGTCCAATTCAAAGC+AGG + chr2_3:6722081-6722100 None:intergenic 40.0%
GGGAAACTTATGGTCAGATT+TGG + chr2_3:6722097-6722116 None:intergenic 40.0%
GGAGCACATACAATGACATA+GGG + chr2_3:6722117-6722136 None:intergenic 40.0%
! AGGAGCACATACAATGACAT+AGG + chr2_3:6722118-6722137 None:intergenic 40.0%
TGCTCCTCCTTATCAATCAT+TGG - chr2_3:6722131-6722150 Msa0274890:intron 40.0%
! TGGATTACCTTGGTGATCTT+AGG - chr2_3:6722151-6722170 Msa0274890:intron 40.0%
TGATCTTAGGTGAGCAATCT+TGG - chr2_3:6722164-6722183 Msa0274890:intron 40.0%
! CAGTGTCAATTGCTGATTGT+AGG - chr2_3:6722236-6722255 Msa0274890:intron 40.0%
GTGGCATTGTTGTCAAATAG+TGG + chr2_3:6722370-6722389 None:intergenic 40.0%
AACGCAGCATTATACCATTG+TGG + chr2_3:6722389-6722408 None:intergenic 40.0%
ATAATGCTGCGTTTGTGAGT+TGG - chr2_3:6722396-6722415 Msa0274890:intron 40.0%
TAATGCTGCGTTTGTGAGTT+GGG - chr2_3:6722397-6722416 Msa0274890:intron 40.0%
!!! TTTGTGAGTTGGGTTTTGGA+TGG - chr2_3:6722407-6722426 Msa0274890:intron 40.0%
!!! TTGTGAGTTGGGTTTTGGAT+GGG - chr2_3:6722408-6722427 Msa0274890:intron 40.0%
! TTTGGATGGGAAGATTTTCG+AGG - chr2_3:6722421-6722440 Msa0274890:intron 40.0%
! TTGGATGGGAAGATTTTCGA+GGG - chr2_3:6722422-6722441 Msa0274890:intron 40.0%
AGGAGGGTAATCTAACAGAA+CGG + chr2_3:6723089-6723108 None:intergenic 40.0%
CGTGATATGAGAATTCAGGA+GGG + chr2_3:6723105-6723124 None:intergenic 40.0%
CCTCCTGAATTCTCATATCA+CGG - chr2_3:6723103-6723122 Msa0274890:intron 40.0%
! CGATAATGGTTTATGCGATG+AGG - chr2_3:6723313-6723332 Msa0274890:intron 40.0%
TTAGAAGGACATCAGTTCTC+GGG + chr2_3:6723553-6723572 None:intergenic 40.0%
AATATTGTGCTCGAGTTTGG+TGG - chr2_3:6723581-6723600 Msa0274890:intron 40.0%
ATGAGATTCAGTACGTGATC+AGG + chr2_3:6723799-6723818 None:intergenic 40.0%
TATCACACCATCAGACATCA+GGG + chr2_3:6723847-6723866 None:intergenic 40.0%
TTATCACACCATCAGACATC+AGG + chr2_3:6723848-6723867 None:intergenic 40.0%
CTTCAAAATTGCAACGGAGA+GGG + chr2_3:6723981-6724000 None:intergenic 40.0%
TCTTCAAAATTGCAACGGAG+AGG + chr2_3:6723982-6724001 None:intergenic 40.0%
GTGATAATCATCCTTTGTCC+AGG - chr2_3:6724032-6724051 Msa0274890:intron 40.0%
AATCATCCTTTGTCCAGGTT+AGG - chr2_3:6724037-6724056 Msa0274890:intron 40.0%
AAATCACCTAACCTGGACAA+AGG + chr2_3:6724046-6724065 None:intergenic 40.0%
TTATGGGAAATCACCTAACC+TGG + chr2_3:6724053-6724072 None:intergenic 40.0%
GTATGGTGATAGCTAGAGTA+AGG + chr2_3:6724136-6724155 None:intergenic 40.0%
GAATCATGTGATGATCATGC+AGG - chr2_3:6724557-6724576 Msa0274890:intron 40.0%
!! TTGCCTTTGAACATTTTGGC+AGG - chr2_3:6724856-6724875 Msa0274890:CDS 40.0%
TTGCCTGCCAAAATGTTCAA+AGG + chr2_3:6724862-6724881 None:intergenic 40.0%
! TTTTGGCAGGCAAGAATTGA+TGG - chr2_3:6724869-6724888 Msa0274890:CDS 40.0%
ATGGATCTAGTCGACAAAAG+TGG - chr2_3:6724888-6724907 Msa0274890:CDS 40.0%
TGGATCTAGTCGACAAAAGT+GGG - chr2_3:6724889-6724908 Msa0274890:CDS 40.0%
TCAAAAACTCGCCAAGAAGT+TGG - chr2_3:6725148-6725167 Msa0274890:intron 40.0%
CAAAAACTCGCCAAGAAGTT+GGG - chr2_3:6725149-6725168 Msa0274890:intron 40.0%
! TGAGCAAAGCTAGAGTACTT+CGG + chr2_3:6725181-6725200 None:intergenic 40.0%
! AAGTTGGTCATAGAGTCTCA+AGG + chr2_3:6725207-6725226 None:intergenic 40.0%
GTGGAGTTGAGAAGAAATGG+GGG + chr2_3:6721509-6721528 None:intergenic 45.0%
GGTGGAGTTGAGAAGAAATG+GGG + chr2_3:6721510-6721529 None:intergenic 45.0%
! GTGGTGGAGTTGAGAAGAAA+TGG + chr2_3:6721512-6721531 None:intergenic 45.0%
AGAGAAATTGGGGAATTGGG+TGG + chr2_3:6721531-6721550 None:intergenic 45.0%
CAACATGACCTTCTCATCGT+TGG - chr2_3:6721648-6721667 Msa0274890:three_prime_UTR 45.0%
TTGCTCACCTAAGATCACCA+AGG + chr2_3:6722161-6722180 None:intergenic 45.0%
!! TGCGTTTGTGAGTTGGGTTT+TGG - chr2_3:6722403-6722422 Msa0274890:intron 45.0%
TTACGGGTGTGTACATGAGT+TGG + chr2_3:6722604-6722623 None:intergenic 45.0%
TGTTGGTGCAGCTGTTGTAA+GGG - chr2_3:6722653-6722672 Msa0274890:intron 45.0%
CCGTGATATGAGAATTCAGG+AGG + chr2_3:6723106-6723125 None:intergenic 45.0%
! GTTTGGAGTGTCAACCATTC+AGG - chr2_3:6723219-6723238 Msa0274890:intron 45.0%
ATACTCCAGTCGTGCCAATT+GGG - chr2_3:6723522-6723541 Msa0274890:intron 45.0%
TTGATTGCCCTGATGTCTGA+TGG - chr2_3:6723837-6723856 Msa0274890:intron 45.0%
!! ACTTGAAGAGTTGGCCTTCA+CGG - chr2_3:6724183-6724202 Msa0274890:intron 45.0%
! TGGTCGTGTAAAGCTGACTT+TGG + chr2_3:6724434-6724453 None:intergenic 45.0%
AAGACACAACTCAAGAGGTG+AGG + chr2_3:6724793-6724812 None:intergenic 45.0%
GAAATTGGGGAATTGGGTGG+TGG + chr2_3:6721528-6721547 None:intergenic 50.0%
ATCGTTGGTCCTGGTGTTCT+TGG - chr2_3:6721663-6721682 Msa0274890:three_prime_UTR 50.0%
TCCTGGTGTTCTTGGTCGTT+TGG - chr2_3:6721671-6721690 Msa0274890:three_prime_UTR 50.0%
ACCAAACGACCAAGAACACC+AGG + chr2_3:6721675-6721694 None:intergenic 50.0%
GTCGTTTGGTCGCTCATCAA+TGG - chr2_3:6721685-6721704 Msa0274890:three_prime_UTR 50.0%
GTTTGGTCGCTCATCAATGG+CGG - chr2_3:6721688-6721707 Msa0274890:three_prime_UTR 50.0%
! GTGTTGGTGCAGCTGTTGTA+AGG - chr2_3:6722652-6722671 Msa0274890:intron 50.0%
GCAGAATGCTGGAATGGAGA+AGG - chr2_3:6723248-6723267 Msa0274890:intron 50.0%
GATACTCCAGTCGTGCCAAT+TGG - chr2_3:6723521-6723540 Msa0274890:intron 50.0%
! TGTGCTCGAGTTTGGTGGTT+CGG - chr2_3:6723586-6723605 Msa0274890:intron 50.0%
! GGTTCGGTTGTTAGACTGTC+TGG - chr2_3:6723602-6723621 Msa0274890:intron 50.0%
TCACTCGGCGTATGTACGTA+TGG + chr2_3:6724153-6724172 None:intergenic 50.0%
GCAGGAACTGATGATCCTCT+TGG - chr2_3:6725109-6725128 Msa0274890:intron 50.0%
AAACTCGCCAAGAAGTTGGG+TGG - chr2_3:6725152-6725171 Msa0274890:intron 50.0%
AACTCGCCAAGAAGTTGGGT+GGG - chr2_3:6725153-6725172 Msa0274890:intron 50.0%
GACCTTCTCATCGTTGGTCC+TGG - chr2_3:6721654-6721673 Msa0274890:three_prime_UTR 55.0%
CACCAGGACCAACGATGAGA+AGG + chr2_3:6721659-6721678 None:intergenic 55.0%
! GGAGTGTCAACCATTCAGGC+AGG - chr2_3:6723223-6723242 Msa0274890:intron 55.0%
CATTCTGCAGCCTGCCTGAA+TGG + chr2_3:6723236-6723255 None:intergenic 55.0%
CAGGCTGCAGAATGCTGGAA+TGG - chr2_3:6723242-6723261 Msa0274890:intron 55.0%
TCAGGCAGGCTGCAGAATGC+TGG - chr2_3:6723237-6723256 Msa0274890:intron 60.0%
CTCCAGTCGTGCCAATTGGG+AGG - chr2_3:6723525-6723544 Msa0274890:intron 60.0%
CTCCTCCCAATTGGCACGAC+TGG + chr2_3:6723530-6723549 None:intergenic 60.0%
GTTCTCGGGCTCCTCCCAAT+TGG + chr2_3:6723539-6723558 None:intergenic 60.0%
!! AGTTGGCCTTCACGGCGTGA+CGG - chr2_3:6724191-6724210 Msa0274890:intron 60.0%
TCGGCTCCCACCCAACTTCT+TGG + chr2_3:6725162-6725181 None:intergenic 60.0%
GGTCGCTCATCAATGGCGGC+AGG - chr2_3:6721692-6721711 Msa0274890:three_prime_UTR 65.0%
CGGAGAGGGAAGCTGCATCC+TGG + chr2_3:6723967-6723986 None:intergenic 65.0%
!! GTTGGCCTTCACGGCGTGAC+GGG - chr2_3:6724192-6724211 Msa0274890:intron 65.0%
GGTCTCCCGTCACGCCGTGA+AGG + chr2_3:6724200-6724219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6721412 6725530 6721412 ID=Msa0274890;Name=Msa0274890
chr2_3 mRNA 6721412 6725530 6721412 ID=Msa0274890-mRNA-1;Parent=Msa0274890;Name=Msa0274890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=20|0.85|0.75|1|0.71|0.75|8|311|323
chr2_3 exon 6721412 6721829 6721412 ID=Msa0274890-mRNA-1:exon:3202;Parent=Msa0274890-mRNA-1
chr2_3 exon 6722000 6722064 6722000 ID=Msa0274890-mRNA-1:exon:3201;Parent=Msa0274890-mRNA-1
chr2_3 exon 6722889 6722974 6722889 ID=Msa0274890-mRNA-1:exon:3200;Parent=Msa0274890-mRNA-1
chr2_3 exon 6723114 6723196 6723114 ID=Msa0274890-mRNA-1:exon:3199;Parent=Msa0274890-mRNA-1
chr2_3 exon 6723340 6723421 6723340 ID=Msa0274890-mRNA-1:exon:3198;Parent=Msa0274890-mRNA-1
chr2_3 exon 6723608 6723701 6723608 ID=Msa0274890-mRNA-1:exon:3197;Parent=Msa0274890-mRNA-1
chr2_3 exon 6724770 6724942 6724770 ID=Msa0274890-mRNA-1:exon:3196;Parent=Msa0274890-mRNA-1
chr2_3 exon 6725229 6725530 6725229 ID=Msa0274890-mRNA-1:exon:3195;Parent=Msa0274890-mRNA-1
chr2_3 five_prime_UTR 6725511 6725530 6725511 ID=Msa0274890-mRNA-1:five_prime_utr;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6725229 6725510 6725229 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6724770 6724942 6724770 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6723608 6723701 6723608 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6723340 6723421 6723340 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6723114 6723196 6723114 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6722889 6722974 6722889 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6722000 6722064 6722000 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 CDS 6721723 6721829 6721723 ID=Msa0274890-mRNA-1:cds;Parent=Msa0274890-mRNA-1
chr2_3 three_prime_UTR 6721412 6721722 6721412 ID=Msa0274890-mRNA-1:three_prime_utr;Parent=Msa0274890-mRNA-1
Gene Sequence

>Msa0274890

ATGGCATTAGGAGGAATTATCCATTTCAACACTCTCTTCATGCACCAACCACTAACACATTTACACCGTTTCAACCCCCATTTCTTCTCAACTCCACCACCCAATTCCCCAATTTCTCTAAAGCCATCACCTTTATCTTCATCTTTCTCTTCCATGGCTACCCATTTGAATTTCAATATCTCACAATTGCCTTCTTCTCCTTCTCTTTCAATTGGACAACATGACCTTCTCATCGTTGGTCCTGGTGTTCTTGGTCGTTTGGTCGCTCATCAATGGCGGCAGGAACATGAGGGTAGTCAAGTTTTTGGACAGACAATTACTACTGATCATCATGAAGAGTTGGTTCAATTGGGTATTAGTCCTGCTTTGAATTGGACCAAATCTGACCATAAGTTTCCCTATGTCATTGTATGTGCTCCTCCTTATCAATCATTGGATTACCTTGGTGATCTTAGGCAGGCTGCAGAATGCTGGAATGGAGAAGGTTCTTTTCTGTATACATCAAGTTCTGCTCCTTATGATTGTAACGATAATGGTTTATGCGATGAGGATACTCCAGTCGTGCCAATTGGGAGGAGCCCGAGAACTGATGTCCTTCTAAAAGCAGAAAATATTGTGCTCGAGTTTGGTGGTAAAGGTGCACACACTTACTATTTAGAGAAGGGGATCGTTGAATCTAGACCTGATCACGTACTGAATCTCATACATTATGAGGATGCAGCTTCCCTCTCCGTTGCAATTTTGAAGAAACAATTTCGTGGACGAATTTTCTTGGGTTGTGATAATCATCCTTTGTCCAGGCAAGAATTGATGGATCTAGTCGACAAAAGTGGGAAGTTCAGTAAAAAGTTCGAGAAATTCACAGGAACTGATGATCCTCTTGGTAAGAGATTGAACAACTCAAAAACTCGCCAAGAAGTTGGGTGGGAGCCGAAGTACTCTAGCTTTGCTCATTTCCTTGAGACTCTATGA

Protein sequence

>Msa0274890

MALGGIIHFNTLFMHQPLTHLHRFNPHFFSTPPPNSPISLKPSPLSSSFSSMATHLNFNISQLPSSPSLSIGQHDLLIVGPGVLGRLVAHQWRQEHEGSQVFGQTITTDHHEELVQLGISPALNWTKSDHKFPYVIVCAPPYQSLDYLGDLRQAAECWNGEGSFLYTSSSAPYDCNDNGLCDEDTPVVPIGRSPRTDVLLKAENIVLEFGGKGAHTYYLEKGIVESRPDHVLNLIHYEDAASLSVAILKKQFRGRIFLGCDNHPLSRQELMDLVDKSGKFSKKFEKFTGTDDPLGKRLNNSKTRQEVGWEPKYSSFAHFLETL*