AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196990 MtrunA17_Chr8g0365421 85.812 437 9 1 1 437 1 384 0.0 724
Msa1196990 MtrunA17_Chr7g0228011 62.534 363 82 2 76 437 8 317 5.39e-137 395
Msa1196990 MtrunA17_Chr6g0453201 59.128 367 96 2 72 437 7 320 5.68e-133 385
Msa1196990 MtrunA17_Chr6g0466321 54.223 367 114 2 72 437 15 328 1.26e-125 367
Msa1196990 MtrunA17_Chr6g0465501 53.951 367 115 2 72 437 15 328 2.24e-125 366
Msa1196990 MtrunA17_Chr6g0453191 58.235 340 88 2 72 410 7 293 2.53e-116 342
Msa1196990 MtrunA17_Chr8g0351271 41.209 364 154 6 77 436 5 312 5.71e-77 243
Msa1196990 MtrunA17_Chr8g0351481 41.226 359 153 5 77 433 5 307 2.97e-76 241
Msa1196990 MtrunA17_Chr4g0015051 31.888 392 168 12 76 435 6 330 8.15e-33 126
Msa1196990 MtrunA17_Chr4g0014691 32.741 394 161 15 76 435 6 329 1.06e-32 126
Msa1196990 MtrunA17_Chr4g0014541 32.741 394 161 15 76 435 6 329 1.30e-32 126
Msa1196990 MtrunA17_Chr4g0014951 31.122 392 171 10 76 435 6 330 3.68e-32 124
Msa1196990 MtrunA17_Chr4g0014971 35.870 276 131 8 191 435 70 330 2.30e-30 119
Msa1196990 MtrunA17_Chr4g0015091 30.591 389 172 10 76 433 6 327 4.08e-30 119
Msa1196990 MtrunA17_Chr4g0014931 30.570 386 181 8 76 435 6 330 7.29e-30 118
Msa1196990 MtrunA17_Chr7g0235021 33.086 269 144 7 190 432 68 326 5.44e-24 102
Msa1196990 MtrunA17_Chr2g0316731 27.020 396 192 11 74 433 24 358 7.91e-21 93.6
Msa1196990 MtrunA17_Chr2g0281281 26.854 391 185 15 76 433 1 323 1.44e-19 89.4
Msa1196990 MtrunA17_Chr2g0281301 28.986 276 150 11 191 433 74 336 2.40e-18 85.9
Msa1196990 MtrunA17_Chr6g0465551 52.308 65 30 1 72 135 15 79 1.57e-16 74.3
Msa1196990 MtrunA17_Chr4g0015001 31.004 229 128 6 231 433 5 229 2.16e-15 75.5
Msa1196990 MtrunA17_Chr4g0045041 27.798 277 152 9 192 433 357 620 9.82e-15 76.3
Msa1196990 MtrunA17_Chr6g0474141 26.934 349 181 16 135 432 31 356 9.56e-12 66.2
Msa1196990 MtrunA17_Chr8g0385221 34.641 153 81 8 230 368 195 342 7.45e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196990 AT1G23740.1 70.765 366 54 1 72 437 74 386 1.24e-180 509
Msa1196990 AT4G13010.1 30.691 391 173 12 76 435 6 329 2.19e-27 112
Msa1196990 AT3G15090.1 28.094 299 151 8 77 370 33 272 4.86e-20 91.7
Msa1196990 AT4G21580.1 28.467 274 152 10 192 433 62 323 4.50e-15 76.3
Msa1196990 AT3G56460.1 29.137 278 151 9 190 433 71 336 5.26e-15 76.3
Msa1196990 AT4G21580.3 28.467 274 146 11 192 433 62 317 5.03e-14 73.2

Find 102 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTTTCCACTCTCTAAATA+TGG 0.138626 8_1:-47095360 None:intergenic
GGCACTAAAACCTACAAATT+TGG 0.155938 8_1:+47094394 Msa1196990:CDS
GCCTAAACAATTTGGATCTT+TGG 0.209730 8_1:+47094340 Msa1196990:CDS
GGACCTTTGGGATCTATAAT+TGG 0.222062 8_1:-47095387 None:intergenic
AAGAAGGCAGGGAAAGTTTA+AGG 0.274790 8_1:+47093599 Msa1196990:CDS
TTAGAAGGGCCTAAACAATT+TGG 0.276591 8_1:+47094332 Msa1196990:CDS
ATTCTTGTTCTCAATGGTTC+TGG 0.283840 8_1:+47094503 Msa1196990:CDS
GCTTGGGTGTATGGAGAATA+TGG 0.307432 8_1:+47093468 Msa1196990:CDS
CAGAACTCTTATTTACTCAT+AGG 0.307864 8_1:-47095556 None:intergenic
GAAAAGTCTTGGAGCTGATT+TGG 0.309843 8_1:+47094922 Msa1196990:CDS
GTTCCTGGCTATGATGTTGC+TGG 0.312264 8_1:+47094230 Msa1196990:CDS
GAGGAAAGCTTACCGAAATT+AGG 0.320074 8_1:+47093833 Msa1196990:CDS
TGTGTCCATTAGACTGTTCC+TGG 0.323261 8_1:+47094215 Msa1196990:intron
AGTTGGAAGCCTAGTGATTC+AGG 0.332144 8_1:+47094529 Msa1196990:CDS
ATCAAGGCGTGCTAGATTCT+TGG 0.332548 8_1:+47093377 Msa1196990:CDS
TGAGACTGCTTATGAAGGTT+TGG 0.356657 8_1:+47094451 Msa1196990:CDS
ACACAGATTCCACCTAATTT+CGG 0.362573 8_1:-47093845 None:intergenic
GGCTACGGATTCTCCGCTTC+CGG 0.367463 8_1:+47093620 Msa1196990:CDS
AGCAAAAGAAGAAAAGGTTA+TGG 0.372769 8_1:+47093752 Msa1196990:CDS
CACTTCAAGCACTAGACATT+TGG 0.377637 8_1:+47094892 Msa1196990:CDS
AGCAAAAGAGAATGGACCTT+TGG 0.385814 8_1:-47095400 None:intergenic
GAAATGAAGGCTTGGGTGTA+TGG 0.386358 8_1:+47093459 Msa1196990:CDS
CCTTTCCACTCTCTAAATAT+GGG 0.387466 8_1:-47095359 None:intergenic
GTGAATGAGAAAGCATTAGA+AGG 0.394099 8_1:+47094317 Msa1196990:CDS
AAATCTATTCTTGTTCTCAA+TGG 0.403553 8_1:+47094497 Msa1196990:CDS
TGAGCAAAGTCCAAATTTGT+AGG 0.412003 8_1:-47094404 None:intergenic
TGGAATCTGTGTGAAGATAT+TGG 0.413886 8_1:+47093856 Msa1196990:CDS
TCCTTCCGAAATGAAGGCTT+GGG 0.417863 8_1:+47093452 Msa1196990:CDS
GCCAAAGATCCAAATTGTTT+AGG 0.420332 8_1:-47094341 None:intergenic
GGCAGTGTAGTAGCACTAAC+AGG 0.429167 8_1:+47095270 Msa1196990:CDS
GCAAAAGAGAATGGACCTTT+GGG 0.433468 8_1:-47095399 None:intergenic
TTTGGTGTAAATCGGGTATC+CGG 0.435054 8_1:+47095658 Msa1196990:three_prime_UTR
AGAACTCTTATTTACTCATA+GGG 0.437018 8_1:-47095555 None:intergenic
TTCCTGGCTATGATGTTGCT+GGG 0.439986 8_1:+47094231 Msa1196990:CDS
AGAGAAAGTGGTGAAGTTGA+AGG 0.445078 8_1:-47093285 None:intergenic
ATACACCCAAGCCTTCATTT+CGG 0.448834 8_1:-47093457 None:intergenic
ACCTGATGTTAAGGAAGATC+AGG 0.457278 8_1:+47093530 Msa1196990:CDS
TTAAATGTCATAAAGTTTCA+AGG 0.458077 8_1:-47095631 None:intergenic
ACAAGTTCCTTCCGAAATGA+AGG 0.458472 8_1:+47093446 Msa1196990:CDS
TTCCTTCCGAAATGAAGGCT+TGG 0.463507 8_1:+47093451 Msa1196990:CDS
ATTGAAACAAACAAAGCTAC+TGG 0.463741 8_1:+47095447 Msa1196990:CDS
GAAACAACTTGCAACTGATA+AGG 0.464131 8_1:+47093201 Msa1196990:five_prime_UTR
CTCAATGGTTCTGGTGGAGT+TGG 0.465977 8_1:+47094512 Msa1196990:CDS
GCTTCTAGCAAAAGAAGAAA+AGG 0.471216 8_1:+47093746 Msa1196990:CDS
AAGGAAAATCTGAGAGAAAG+TGG 0.473230 8_1:-47093297 None:intergenic
GCTGCTCTTAACCCTGTTGA+TGG 0.476989 8_1:+47093573 Msa1196990:CDS
TGAAGGAAGTGAAGGAAGAA+TGG 0.477949 8_1:-47093268 None:intergenic
GCTATTGAGACTGCTTATGA+AGG 0.483022 8_1:+47094446 Msa1196990:CDS
ACCTGATCTTCCTTAACATC+AGG 0.484347 8_1:-47093531 None:intergenic
CTTGTTCTCAATGGTTCTGG+TGG 0.485138 8_1:+47094506 Msa1196990:CDS
TTTCTTCAGAACAGCTCCAT+TGG 0.486934 8_1:-47095331 None:intergenic
GCAACCTGAGCAAAAGAGAA+TGG 0.487160 8_1:-47095408 None:intergenic
TGTTGCTGTACCTGATGTTA+AGG 0.491842 8_1:+47093521 Msa1196990:CDS
TTGGAGCTACTGAAAAGTCT+TGG 0.497793 8_1:+47094911 Msa1196990:CDS
CACTCTTGTCTTCTTCATCA+AGG 0.501112 8_1:+47093361 Msa1196990:CDS
TATGAAGGTTTGGAGAGGAC+TGG 0.503871 8_1:+47094461 Msa1196990:CDS
GAAGGTTGGCAGCGAAGTAA+AGG 0.506684 8_1:+47094262 Msa1196990:CDS
TTTATCTGATTCATGGGATG+GGG 0.509890 8_1:-47095485 None:intergenic
AGCTGTTGAGGAGAAATTGT+TGG 0.514874 8_1:+47094373 Msa1196990:CDS
AGATTTGTAGTGACTTCCAA+TGG 0.518081 8_1:+47095315 Msa1196990:CDS
GCAGGGAAAGTTTAAGGCTA+CGG 0.519335 8_1:+47093605 Msa1196990:CDS
GGCTGAGTACACAGCTGTTG+AGG 0.523349 8_1:+47094361 Msa1196990:CDS
TGTTGATGGTAAAAGAAGGC+AGG 0.523502 8_1:+47093587 Msa1196990:CDS
AAAGTCGGCGATGAAGTGTA+TGG 0.526704 8_1:+47094290 Msa1196990:CDS
ATCTACTACTGCTTCTTCTG+AGG 0.538407 8_1:+47093410 Msa1196990:CDS
GTCACTACAAATCTGAATCC+AGG 0.545336 8_1:-47095306 None:intergenic
GATGTAGTTTATGATGCCAT+TGG 0.546289 8_1:+47094992 Msa1196990:CDS
AACATCAGGTACAGCAACAT+TGG 0.547791 8_1:-47093517 None:intergenic
TAAATGTCATAAAGTTTCAA+GGG 0.552176 8_1:-47095630 None:intergenic
GGATTCAATAGCTATGATAG+TGG 0.554980 8_1:+47093773 Msa1196990:CDS
GGTGAAGTTGAAGGAAGTGA+AGG 0.559167 8_1:-47093276 None:intergenic
ACAGGAGCTGTTACACCACC+TGG 0.561590 8_1:+47095288 Msa1196990:CDS
GAGTGAATAATCACCGGAAG+CGG 0.565819 8_1:-47093633 None:intergenic
ACCCCAGCAACATCATAGCC+AGG 0.566870 8_1:-47094233 None:intergenic
GCAATGTGACAGAGCAGTGA+AGG 0.567763 8_1:+47095233 Msa1196990:CDS
AATGGTGAGGTGAGAAGTTG+TGG 0.574018 8_1:-47093250 None:intergenic
ACCCTGTTGATGGTAAAAGA+AGG 0.577796 8_1:+47093583 Msa1196990:CDS
CTAAACCCATATTTAGAGAG+TGG 0.581322 8_1:+47095354 Msa1196990:CDS
GAAGTAAAGGACTTCAAAGT+CGG 0.582450 8_1:+47094275 Msa1196990:CDS
ACCCAAGCCTTCATTTCGGA+AGG 0.582988 8_1:-47093453 None:intergenic
TAAGCAGTCTCAATAGCAAG+AGG 0.589060 8_1:-47094440 None:intergenic
GCAGTGAAGGCAATAAAAGA+AGG 0.594518 8_1:+47095246 Msa1196990:CDS
GCTGGGGTCGTAGTGAAGGT+TGG 0.602197 8_1:+47094248 Msa1196990:CDS
AGAACAAGAATAGATTTACC+AGG 0.605332 8_1:-47094491 None:intergenic
GTTGATGGTAAAAGAAGGCA+GGG 0.608172 8_1:+47093588 Msa1196990:CDS
GGTGAGGTGAGAAGTTGTGG+TGG 0.610962 8_1:-47093247 None:intergenic
GAAAGCTTACCGAAATTAGG+TGG 0.612308 8_1:+47093836 Msa1196990:CDS
TGAATGAGAAAGCATTAGAA+GGG 0.614502 8_1:+47094318 Msa1196990:CDS
TGTTGCTGGGGTCGTAGTGA+AGG 0.634534 8_1:+47094244 Msa1196990:CDS
AACAAACAAAGCTACTGGAA+AGG 0.637522 8_1:+47095452 Msa1196990:CDS
TGGGTGTATGGAGAATATGG+AGG 0.638579 8_1:+47093471 Msa1196990:CDS
CAAATGTCTAGTGCTTGAAG+TGG 0.641907 8_1:-47094891 None:intergenic
CTGCTTATGAAGGTTTGGAG+AGG 0.648485 8_1:+47094456 Msa1196990:CDS
CCCATATTTAGAGAGTGGAA+AGG 0.653180 8_1:+47095359 Msa1196990:CDS
GAGTAAATACCTGAATCACT+AGG 0.653524 8_1:-47094538 None:intergenic
GTGAAGGCAATAAAAGAAGG+TGG 0.653752 8_1:+47095249 Msa1196990:CDS
TCCTGGCTATGATGTTGCTG+GGG 0.668886 8_1:+47094232 Msa1196990:CDS
TTTGGCTATTGACTACACAA+AGG 0.684942 8_1:+47094940 Msa1196990:CDS
AAGCCAATTATAGATCCCAA+AGG 0.697488 8_1:+47095384 Msa1196990:CDS
AAAACACCAACGTTAAAACG+TGG 0.713375 8_1:+47093158 None:intergenic
GAAGTGAAGGAAGAATGGTG+AGG 0.729256 8_1:-47093263 None:intergenic
ACTACAAATCTGAATCCAGG+TGG 0.755064 8_1:-47095303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGACATTTAATTTTTT+TGG + chr8_1:47095640-47095659 Msa1196990:three_prime_UTR 10.0%
!!! TCAGTTATATTTTGATAAAA+TGG - chr8_1:47094638-47094657 None:intergenic 15.0%
!!! GTGTATTTTATTAATTAGTT+TGG - chr8_1:47095130-47095149 None:intergenic 15.0%
!!! ATAATTTTTATCTGATTCAT+GGG - chr8_1:47095494-47095513 None:intergenic 15.0%
!!! TATAATTTTTATCTGATTCA+TGG - chr8_1:47095495-47095514 None:intergenic 15.0%
!! ATGAATCAGATAAAAATTAT+AGG + chr8_1:47095494-47095513 Msa1196990:exon 15.0%
!!! TTAATTTTTTTGGTGTAAAT+CGG + chr8_1:47095650-47095669 Msa1196990:three_prime_UTR 15.0%
!!! TTACTTTTGCAAGAAAATTT+AGG + chr8_1:47093890-47093909 Msa1196990:intron 20.0%
!!! CAATTAAGTTTTTGTATTCT+AGG + chr8_1:47094159-47094178 Msa1196990:intron 20.0%
!!! TTAAGTACTGAAATCAAATT+TGG + chr8_1:47094187-47094206 Msa1196990:intron 20.0%
!!! TAAACTACATCAAATTTTTC+TGG - chr8_1:47094983-47095002 None:intergenic 20.0%
!! ATACAAACTTTCAAACAATT+TGG + chr8_1:47095060-47095079 Msa1196990:intron 20.0%
!! TAAATGTCATAAAGTTTCAA+GGG - chr8_1:47095633-47095652 None:intergenic 20.0%
!! TTAAATGTCATAAAGTTTCA+AGG - chr8_1:47095634-47095653 None:intergenic 20.0%
!!! TAATTTTTTTGGTGTAAATC+GGG + chr8_1:47095651-47095670 Msa1196990:three_prime_UTR 20.0%
!!! TTTTTTGGTTAGTTTTTGGT+TGG - chr8_1:47093329-47093348 None:intergenic 25.0%
!!! CAAGTTTTTTGGTTAGTTTT+TGG - chr8_1:47093333-47093352 None:intergenic 25.0%
!!! GTTTTTGTTTTTCTATGTTG+TGG + chr8_1:47093668-47093687 Msa1196990:intron 25.0%
!!! TGAAGATGATTTTAGAATTG+AGG + chr8_1:47093814-47093833 Msa1196990:CDS 25.0%
!!! TAGTTAATTTAGCTCTTGTT+TGG + chr8_1:47093935-47093954 Msa1196990:intron 25.0%
! AAATCTATTCTTGTTCTCAA+TGG + chr8_1:47094497-47094516 Msa1196990:CDS 25.0%
! ATATAACTGATACAATGTGT+CGG + chr8_1:47094648-47094667 Msa1196990:intron 25.0%
!! TTTTAGACGAAGTATATTTC+TGG + chr8_1:47094750-47094769 Msa1196990:intron 25.0%
!! TTTAAAATTTCTTGCGCATA+AGG + chr8_1:47094773-47094792 Msa1196990:intron 25.0%
! TTAAAATTTCTTGCGCATAA+GGG + chr8_1:47094774-47094793 Msa1196990:intron 25.0%
!! GTAGAAAAGAATTTTACCAA+TGG - chr8_1:47095011-47095030 None:intergenic 25.0%
!! AGAACTCTTATTTACTCATA+GGG - chr8_1:47095558-47095577 None:intergenic 25.0%
AAAAGAGAGTGAATAATCAC+CGG - chr8_1:47093642-47093661 None:intergenic 30.0%
AGCAAAAGAAGAAAAGGTTA+TGG + chr8_1:47093752-47093771 Msa1196990:CDS 30.0%
AATAAGCTGAAAACACCTTA+TGG - chr8_1:47094041-47094060 None:intergenic 30.0%
!! TGAATGAGAAAGCATTAGAA+GGG + chr8_1:47094318-47094337 Msa1196990:CDS 30.0%
AGAACAAGAATAGATTTACC+AGG - chr8_1:47094494-47094513 None:intergenic 30.0%
CTACAATATTTGAGCATGAA+AGG - chr8_1:47094575-47094594 None:intergenic 30.0%
AAAGTTCTTAGTCAGGTAAA+GGG - chr8_1:47094733-47094752 None:intergenic 30.0%
AAAAGTTCTTAGTCAGGTAA+AGG - chr8_1:47094734-47094753 None:intergenic 30.0%
TGAAAGTTTGTATCGTAGAT+TGG - chr8_1:47095053-47095072 None:intergenic 30.0%
!! ACTGATTTTCAAAAACTCTC+TGG - chr8_1:47095086-47095105 None:intergenic 30.0%
CCAAGTAAATGATGTTAGTT+TGG - chr8_1:47095202-47095221 None:intergenic 30.0%
CCAAACTAACATCATTTACT+TGG + chr8_1:47095199-47095218 Msa1196990:intron 30.0%
ATTGAAACAAACAAAGCTAC+TGG + chr8_1:47095447-47095466 Msa1196990:CDS 30.0%
! TTTTATCTGATTCATGGGAT+GGG - chr8_1:47095489-47095508 None:intergenic 30.0%
! TTTTTATCTGATTCATGGGA+TGG - chr8_1:47095490-47095509 None:intergenic 30.0%
! CAGAACTCTTATTTACTCAT+AGG - chr8_1:47095559-47095578 None:intergenic 30.0%
GAAACAACTTGCAACTGATA+AGG + chr8_1:47093201-47093220 Msa1196990:five_prime_UTR 35.0%
AAGGAAAATCTGAGAGAAAG+TGG - chr8_1:47093300-47093319 None:intergenic 35.0%
!!! AGTTTTTGGTTGGAAAGTGA+AGG - chr8_1:47093319-47093338 None:intergenic 35.0%
!!! GTGTTGTGTGACAAGTTTTT+TGG - chr8_1:47093344-47093363 None:intergenic 35.0%
GCTTCTAGCAAAAGAAGAAA+AGG + chr8_1:47093746-47093765 Msa1196990:CDS 35.0%
GGATTCAATAGCTATGATAG+TGG + chr8_1:47093773-47093792 Msa1196990:CDS 35.0%
ACACAGATTCCACCTAATTT+CGG - chr8_1:47093848-47093867 None:intergenic 35.0%
TGGAATCTGTGTGAAGATAT+TGG + chr8_1:47093856-47093875 Msa1196990:CDS 35.0%
TCGCTAATTACATGTCCATA+AGG + chr8_1:47094023-47094042 Msa1196990:intron 35.0%
! AGGTGTTTTCAGCTTATTTC+TGG + chr8_1:47094043-47094062 Msa1196990:intron 35.0%
GAAGTAAAGGACTTCAAAGT+CGG + chr8_1:47094275-47094294 Msa1196990:CDS 35.0%
!! GTGAATGAGAAAGCATTAGA+AGG + chr8_1:47094317-47094336 Msa1196990:CDS 35.0%
TTAGAAGGGCCTAAACAATT+TGG + chr8_1:47094332-47094351 Msa1196990:CDS 35.0%
GCCTAAACAATTTGGATCTT+TGG + chr8_1:47094340-47094359 Msa1196990:CDS 35.0%
GCCAAAGATCCAAATTGTTT+AGG - chr8_1:47094344-47094363 None:intergenic 35.0%
GGCACTAAAACCTACAAATT+TGG + chr8_1:47094394-47094413 Msa1196990:CDS 35.0%
TGAGCAAAGTCCAAATTTGT+AGG - chr8_1:47094407-47094426 None:intergenic 35.0%
ATTCTTGTTCTCAATGGTTC+TGG + chr8_1:47094503-47094522 Msa1196990:CDS 35.0%
GAGTAAATACCTGAATCACT+AGG - chr8_1:47094541-47094560 None:intergenic 35.0%
TCGTCTAAAAGTTCTTAGTC+AGG - chr8_1:47094740-47094759 None:intergenic 35.0%
! CAGCTAGCTAAACAAGTTTT+TGG + chr8_1:47094851-47094870 Msa1196990:intron 35.0%
! TTTGGCTATTGACTACACAA+AGG + chr8_1:47094940-47094959 Msa1196990:CDS 35.0%
GATGTAGTTTATGATGCCAT+TGG + chr8_1:47094992-47095011 Msa1196990:CDS 35.0%
AGTTTATAGACCAAAACGTG+AGG + chr8_1:47095103-47095122 Msa1196990:intron 35.0%
AAGACGCGTTTGTAGATTTA+AGG + chr8_1:47095175-47095194 Msa1196990:intron 35.0%
! TCATTTACTTGGTGATTTGC+AGG + chr8_1:47095210-47095229 Msa1196990:intron 35.0%
! CATTTACTTGGTGATTTGCA+GGG + chr8_1:47095211-47095230 Msa1196990:intron 35.0%
AGATTTGTAGTGACTTCCAA+TGG + chr8_1:47095315-47095334 Msa1196990:CDS 35.0%
CTAAACCCATATTTAGAGAG+TGG + chr8_1:47095354-47095373 Msa1196990:CDS 35.0%
CCTTTCCACTCTCTAAATAT+GGG - chr8_1:47095362-47095381 None:intergenic 35.0%
ACCTTTCCACTCTCTAAATA+TGG - chr8_1:47095363-47095382 None:intergenic 35.0%
AAGCCAATTATAGATCCCAA+AGG + chr8_1:47095384-47095403 Msa1196990:CDS 35.0%
AACAAACAAAGCTACTGGAA+AGG + chr8_1:47095452-47095471 Msa1196990:CDS 35.0%
TTTATCTGATTCATGGGATG+GGG - chr8_1:47095488-47095507 None:intergenic 35.0%
TGAAGGAAGTGAAGGAAGAA+TGG - chr8_1:47093271-47093290 None:intergenic 40.0%
AGAGAAAGTGGTGAAGTTGA+AGG - chr8_1:47093288-47093307 None:intergenic 40.0%
CACTCTTGTCTTCTTCATCA+AGG + chr8_1:47093361-47093380 Msa1196990:CDS 40.0%
ATCTACTACTGCTTCTTCTG+AGG + chr8_1:47093410-47093429 Msa1196990:CDS 40.0%
ACAAGTTCCTTCCGAAATGA+AGG + chr8_1:47093446-47093465 Msa1196990:CDS 40.0%
ATACACCCAAGCCTTCATTT+CGG - chr8_1:47093460-47093479 None:intergenic 40.0%
AACATCAGGTACAGCAACAT+TGG - chr8_1:47093520-47093539 None:intergenic 40.0%
TGTTGCTGTACCTGATGTTA+AGG + chr8_1:47093521-47093540 Msa1196990:CDS 40.0%
ACCTGATGTTAAGGAAGATC+AGG + chr8_1:47093530-47093549 Msa1196990:CDS 40.0%
ACCTGATCTTCCTTAACATC+AGG - chr8_1:47093534-47093553 None:intergenic 40.0%
!! ACCCTGTTGATGGTAAAAGA+AGG + chr8_1:47093583-47093602 Msa1196990:CDS 40.0%
! GCCTTCTTTTACCATCAACA+GGG - chr8_1:47093587-47093606 None:intergenic 40.0%
! TGCCTTCTTTTACCATCAAC+AGG - chr8_1:47093588-47093607 None:intergenic 40.0%
!! TGTTGATGGTAAAAGAAGGC+AGG + chr8_1:47093587-47093606 Msa1196990:CDS 40.0%
!! GTTGATGGTAAAAGAAGGCA+GGG + chr8_1:47093588-47093607 Msa1196990:CDS 40.0%
AAGAAGGCAGGGAAAGTTTA+AGG + chr8_1:47093599-47093618 Msa1196990:CDS 40.0%
GAGGAAAGCTTACCGAAATT+AGG + chr8_1:47093833-47093852 Msa1196990:CDS 40.0%
GAAAGCTTACCGAAATTAGG+TGG + chr8_1:47093836-47093855 Msa1196990:CDS 40.0%
CATGTACTTGTGAGACTGTT+TGG + chr8_1:47093985-47094004 Msa1196990:intron 40.0%
AGCTGTTGAGGAGAAATTGT+TGG + chr8_1:47094373-47094392 Msa1196990:CDS 40.0%
TAAGCAGTCTCAATAGCAAG+AGG - chr8_1:47094443-47094462 None:intergenic 40.0%
GCTATTGAGACTGCTTATGA+AGG + chr8_1:47094446-47094465 Msa1196990:CDS 40.0%
TGAGACTGCTTATGAAGGTT+TGG + chr8_1:47094451-47094470 Msa1196990:CDS 40.0%
GTTATTGCTCTATGAAGCAC+AGG - chr8_1:47094694-47094713 None:intergenic 40.0%
GCTGCAAGTCATTAAAGGTA+TGG - chr8_1:47094835-47094854 None:intergenic 40.0%
AGCTAGCTGCAAGTCATTAA+AGG - chr8_1:47094840-47094859 None:intergenic 40.0%
CAAATGTCTAGTGCTTGAAG+TGG - chr8_1:47094894-47094913 None:intergenic 40.0%
CACTTCAAGCACTAGACATT+TGG + chr8_1:47094892-47094911 Msa1196990:CDS 40.0%
TTGGAGCTACTGAAAAGTCT+TGG + chr8_1:47094911-47094930 Msa1196990:CDS 40.0%
GAAAAGTCTTGGAGCTGATT+TGG + chr8_1:47094922-47094941 Msa1196990:CDS 40.0%
!! TTAGTTTGGTCCTCACGTTT+TGG - chr8_1:47095116-47095135 None:intergenic 40.0%
GCAGTGAAGGCAATAAAAGA+AGG + chr8_1:47095246-47095265 Msa1196990:CDS 40.0%
GTGAAGGCAATAAAAGAAGG+TGG + chr8_1:47095249-47095268 Msa1196990:CDS 40.0%
ACTACAAATCTGAATCCAGG+TGG - chr8_1:47095306-47095325 None:intergenic 40.0%
GTCACTACAAATCTGAATCC+AGG - chr8_1:47095309-47095328 None:intergenic 40.0%
TTTCTTCAGAACAGCTCCAT+TGG - chr8_1:47095334-47095353 None:intergenic 40.0%
CCCATATTTAGAGAGTGGAA+AGG + chr8_1:47095359-47095378 Msa1196990:CDS 40.0%
!! GGACCTTTGGGATCTATAAT+TGG - chr8_1:47095390-47095409 None:intergenic 40.0%
GCAAAAGAGAATGGACCTTT+GGG - chr8_1:47095402-47095421 None:intergenic 40.0%
AGCAAAAGAGAATGGACCTT+TGG - chr8_1:47095403-47095422 None:intergenic 40.0%
! TTTGGTGTAAATCGGGTATC+CGG + chr8_1:47095658-47095677 Msa1196990:three_prime_UTR 40.0%
AATGGTGAGGTGAGAAGTTG+TGG - chr8_1:47093253-47093272 None:intergenic 45.0%
GAAGTGAAGGAAGAATGGTG+AGG - chr8_1:47093266-47093285 None:intergenic 45.0%
GGTGAAGTTGAAGGAAGTGA+AGG - chr8_1:47093279-47093298 None:intergenic 45.0%
ATCAAGGCGTGCTAGATTCT+TGG + chr8_1:47093377-47093396 Msa1196990:CDS 45.0%
TTCCTTCCGAAATGAAGGCT+TGG + chr8_1:47093451-47093470 Msa1196990:CDS 45.0%
TCCTTCCGAAATGAAGGCTT+GGG + chr8_1:47093452-47093471 Msa1196990:CDS 45.0%
GAAATGAAGGCTTGGGTGTA+TGG + chr8_1:47093459-47093478 Msa1196990:CDS 45.0%
GCTTGGGTGTATGGAGAATA+TGG + chr8_1:47093468-47093487 Msa1196990:CDS 45.0%
TGGGTGTATGGAGAATATGG+AGG + chr8_1:47093471-47093490 Msa1196990:CDS 45.0%
! GCAGGGAAAGTTTAAGGCTA+CGG + chr8_1:47093605-47093624 Msa1196990:CDS 45.0%
GAGTGAATAATCACCGGAAG+CGG - chr8_1:47093636-47093655 None:intergenic 45.0%
TGTGTCCATTAGACTGTTCC+TGG + chr8_1:47094215-47094234 Msa1196990:intron 45.0%
CATAGCCAGGAACAGTCTAA+TGG - chr8_1:47094223-47094242 None:intergenic 45.0%
TTCCTGGCTATGATGTTGCT+GGG + chr8_1:47094231-47094250 Msa1196990:CDS 45.0%
AAAGTCGGCGATGAAGTGTA+TGG + chr8_1:47094290-47094309 Msa1196990:CDS 45.0%
CTGCTTATGAAGGTTTGGAG+AGG + chr8_1:47094456-47094475 Msa1196990:CDS 45.0%
TATGAAGGTTTGGAGAGGAC+TGG + chr8_1:47094461-47094480 Msa1196990:CDS 45.0%
!! CTTGTTCTCAATGGTTCTGG+TGG + chr8_1:47094506-47094525 Msa1196990:CDS 45.0%
AGTTGGAAGCCTAGTGATTC+AGG + chr8_1:47094529-47094548 Msa1196990:CDS 45.0%
CATGTAATCGTCACATGCGT+CGG - chr8_1:47094606-47094625 None:intergenic 45.0%
! CAATGTGTCGGTATCATGTC+TGG + chr8_1:47094660-47094679 Msa1196990:intron 45.0%
! AGGTCCATTCTCTTTTGCTC+AGG + chr8_1:47095404-47095423 Msa1196990:CDS 45.0%
GCAACCTGAGCAAAAGAGAA+TGG - chr8_1:47095411-47095430 None:intergenic 45.0%
ACCCAAGCCTTCATTTCGGA+AGG - chr8_1:47093456-47093475 None:intergenic 50.0%
GCTGCTCTTAACCCTGTTGA+TGG + chr8_1:47093573-47093592 Msa1196990:CDS 50.0%
GTTCCTGGCTATGATGTTGC+TGG + chr8_1:47094230-47094249 Msa1196990:CDS 50.0%
TCCTGGCTATGATGTTGCTG+GGG + chr8_1:47094232-47094251 Msa1196990:CDS 50.0%
GAAGGTTGGCAGCGAAGTAA+AGG + chr8_1:47094262-47094281 Msa1196990:CDS 50.0%
! GAGAGGACTGGATTTTCTCC+TGG + chr8_1:47094473-47094492 Msa1196990:CDS 50.0%
!! CTCAATGGTTCTGGTGGAGT+TGG + chr8_1:47094512-47094531 Msa1196990:CDS 50.0%
GCAATGTGACAGAGCAGTGA+AGG + chr8_1:47095233-47095252 Msa1196990:CDS 50.0%
GGCAGTGTAGTAGCACTAAC+AGG + chr8_1:47095270-47095289 Msa1196990:CDS 50.0%
GGTGAGGTGAGAAGTTGTGG+TGG - chr8_1:47093250-47093269 None:intergenic 55.0%
ACCCCAGCAACATCATAGCC+AGG - chr8_1:47094236-47094255 None:intergenic 55.0%
TGTTGCTGGGGTCGTAGTGA+AGG + chr8_1:47094244-47094263 Msa1196990:CDS 55.0%
GGCTGAGTACACAGCTGTTG+AGG + chr8_1:47094361-47094380 Msa1196990:CDS 55.0%
ACAGGAGCTGTTACACCACC+TGG + chr8_1:47095288-47095307 Msa1196990:CDS 55.0%
GGCTACGGATTCTCCGCTTC+CGG + chr8_1:47093620-47093639 Msa1196990:CDS 60.0%
GCTGGGGTCGTAGTGAAGGT+TGG + chr8_1:47094248-47094267 Msa1196990:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47093172 47095681 47093172 ID=Msa1196990;Name=Msa1196990
chr8_1 mRNA 47093172 47095681 47093172 ID=Msa1196990-mRNA-1;Parent=Msa1196990;Name=Msa1196990-mRNA-1;_AED=0.08;_eAED=0.08;_QI=65|0.5|0.8|0.8|1|1|5|184|437
chr8_1 exon 47093172 47093641 47093172 ID=Msa1196990-mRNA-1:exon:14907;Parent=Msa1196990-mRNA-1
chr8_1 exon 47093728 47093886 47093728 ID=Msa1196990-mRNA-1:exon:14908;Parent=Msa1196990-mRNA-1
chr8_1 exon 47094227 47094550 47094227 ID=Msa1196990-mRNA-1:exon:14909;Parent=Msa1196990-mRNA-1
chr8_1 exon 47094854 47095013 47094854 ID=Msa1196990-mRNA-1:exon:14910;Parent=Msa1196990-mRNA-1
chr8_1 exon 47095232 47095681 47095232 ID=Msa1196990-mRNA-1:exon:14911;Parent=Msa1196990-mRNA-1
chr8_1 five_prime_UTR 47093172 47093236 47093172 ID=Msa1196990-mRNA-1:five_prime_utr;Parent=Msa1196990-mRNA-1
chr8_1 CDS 47093237 47093641 47093237 ID=Msa1196990-mRNA-1:cds;Parent=Msa1196990-mRNA-1
chr8_1 CDS 47093728 47093886 47093728 ID=Msa1196990-mRNA-1:cds;Parent=Msa1196990-mRNA-1
chr8_1 CDS 47094227 47094550 47094227 ID=Msa1196990-mRNA-1:cds;Parent=Msa1196990-mRNA-1
chr8_1 CDS 47094854 47095013 47094854 ID=Msa1196990-mRNA-1:cds;Parent=Msa1196990-mRNA-1
chr8_1 CDS 47095232 47095497 47095232 ID=Msa1196990-mRNA-1:cds;Parent=Msa1196990-mRNA-1
chr8_1 three_prime_UTR 47095498 47095681 47095498 ID=Msa1196990-mRNA-1:three_prime_utr;Parent=Msa1196990-mRNA-1
Gene Sequence

>Msa1196990

ATGTCACTCTCCACCACAACTTCTCACCTCACCATTCTTCCTTCACTTCCTTCAACTTCACCACTTTCTCTCAGATTTTCCTTCACTTTCCAACCAAAAACTAACCAAAAAACTTGTCACACAACACTCTTGTCTTCTTCATCAAGGCGTGCTAGATTCTTGGTGAAGTCTCAATCTACTACTGCTTCTTCTGAGGCTGTGAAAGTGACACAAGTTCCTTCCGAAATGAAGGCTTGGGTGTATGGAGAATATGGAGGTGTCGATGTTTTGAAATTTGACTCCAATGTTGCTGTACCTGATGTTAAGGAAGATCAGGTTCTTGTGAAAGTTGTTGCTGCTGCTCTTAACCCTGTTGATGGTAAAAGAAGGCAGGGAAAGTTTAAGGCTACGGATTCTCCGCTTCCGTATCATCTTAGTTCAATTGCTTCTAGCAAAAGAAGAAAAGGTTATGGATTCAATAGCTATGATAGTGGAGAGTATAAAGTTATCATTGAAGATGATTTTAGAATTGAGGAAAGCTTACCGAAATTAGGTGGAATCTGTGTGAAGATATTGGATGTTGCAACTGTTCCTGGCTATGATGTTGCTGGGGTCGTAGTGAAGGTTGGCAGCGAAGTAAAGGACTTCAAAGTCGGCGATGAAGTGTATGGTGATGTGAATGAGAAAGCATTAGAAGGGCCTAAACAATTTGGATCTTTGGCTGAGTACACAGCTGTTGAGGAGAAATTGTTGGCACTAAAACCTACAAATTTGGACTTTGCTCAAGCTGCTTCTCTTCCTCTTGCTATTGAGACTGCTTATGAAGGTTTGGAGAGGACTGGATTTTCTCCTGGTAAATCTATTCTTGTTCTCAATGGTTCTGGTGGAGTTGGAAGCCTAGTGATTCAGCTAGCTAAACAAGTTTTTGGAGCTTCAAGAGTTGCTGCCACTTCAAGCACTAGACATTTGGAGCTACTGAAAAGTCTTGGAGCTGATTTGGCTATTGACTACACAAAGGAGAACTTTGAAGACTTGCCAGAAAAATTTGATGTAGTTTATGATGCCATTGGGCAATGTGACAGAGCAGTGAAGGCAATAAAAGAAGGTGGCAGTGTAGTAGCACTAACAGGAGCTGTTACACCACCTGGATTCAGATTTGTAGTGACTTCCAATGGAGCTGTTCTGAAGAAACTAAACCCATATTTAGAGAGTGGAAAGGTGAAGCCAATTATAGATCCCAAAGGTCCATTCTCTTTTGCTCAGGTTGCTGAAGCTTTCTCTTACATTGAAACAAACAAAGCTACTGGAAAGGTTGTTATATTCCCCATCCCATGA

Protein sequence

>Msa1196990

MSLSTTTSHLTILPSLPSTSPLSLRFSFTFQPKTNQKTCHTTLLSSSSRRARFLVKSQSTTASSEAVKVTQVPSEMKAWVYGEYGGVDVLKFDSNVAVPDVKEDQVLVKVVAAALNPVDGKRRQGKFKATDSPLPYHLSSIASSKRRKGYGFNSYDSGEYKVIIEDDFRIEESLPKLGGICVKILDVATVPGYDVAGVVVKVGSEVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLALKPTNLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLAKQVFGASRVAATSSTRHLELLKSLGADLAIDYTKENFEDLPEKFDVVYDAIGQCDRAVKAIKEGGSVVALTGAVTPPGFRFVVTSNGAVLKKLNPYLESGKVKPIIDPKGPFSFAQVAEAFSYIETNKATGKVVIFPIP*