AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0409000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409000 MtrunA17_Chr3g0099891 89.170 277 28 1 35 309 179 455 5.59e-172 484
Msa0409000 MtrunA17_Chr3g0099901 73.285 277 69 1 33 309 215 486 3.33e-124 364
Msa0409000 MtrunA17_Chr2g0291201 39.583 288 159 7 30 309 172 452 5.42e-60 198
Msa0409000 MtrunA17_Chr4g0001991 40.741 270 155 4 41 308 251 517 2.29e-59 198
Msa0409000 MtrunA17_Chr1g0212321 39.416 274 152 6 42 308 220 486 5.86e-45 159
Msa0409000 MtrunA17_Chr7g0275731 39.310 290 159 8 29 309 204 485 3.96e-44 157
Msa0409000 MtrunA17_Chr1g0165201 37.591 274 157 6 42 308 203 469 1.34e-39 144
Msa0409000 MtrunA17_Chr3g0130931 35.294 289 165 10 33 309 171 449 2.18e-34 130
Msa0409000 MtrunA17_Chr1g0210201 35.766 274 158 8 42 308 205 467 2.81e-34 130
Msa0409000 MtrunA17_Chr5g0442921 31.650 297 182 8 31 308 259 553 1.23e-31 124
Msa0409000 MtrunA17_Chr6g0484901 33.824 272 165 6 42 308 230 491 9.02e-31 120
Msa0409000 MtrunA17_Chr3g0095891 31.879 298 179 11 31 308 165 458 1.09e-29 117
Msa0409000 MtrunA17_Chr2g0308001 31.271 291 174 11 35 308 127 408 6.16e-28 112
Msa0409000 MtrunA17_Chr2g0307991 29.831 295 180 11 29 308 122 404 9.90e-28 111
Msa0409000 MtrunA17_Chr8g0353261 31.834 289 176 8 29 308 157 433 1.62e-27 110
Msa0409000 MtrunA17_Chr3g0082281 29.900 301 188 10 18 308 32 319 1.51e-26 106
Msa0409000 MtrunA17_Chr1g0164401 31.034 290 177 10 29 308 152 428 3.55e-26 107
Msa0409000 MtrunA17_Chr5g0415951 30.847 295 178 11 33 308 147 434 2.40e-25 105
Msa0409000 MtrunA17_Chr5g0419291 31.655 278 173 9 40 308 159 428 4.49e-25 104
Msa0409000 MtrunA17_Chr5g0435871 31.802 283 169 10 40 308 162 434 2.06e-24 102
Msa0409000 MtrunA17_Chr5g0435971 31.449 283 170 10 40 308 159 431 8.57e-24 100
Msa0409000 MtrunA17_Chr2g0310831 28.772 285 176 9 39 308 168 440 5.94e-23 98.2
Msa0409000 MtrunA17_Chr2g0309561 30.435 299 170 11 35 308 223 508 6.45e-23 98.6
Msa0409000 MtrunA17_Chr8g0352671 30.605 281 173 9 42 308 164 436 1.10e-22 97.4
Msa0409000 MtrunA17_Chr8g0352661 31.786 280 173 10 42 308 162 436 1.85e-22 97.1
Msa0409000 MtrunA17_Chr3g0087851 31.597 288 176 11 34 308 157 436 2.29e-22 96.7
Msa0409000 MtrunA17_Chr5g0395931 28.125 320 186 13 24 308 125 435 9.54e-22 94.7
Msa0409000 MtrunA17_Chr2g0333991 28.929 280 182 9 35 304 159 431 2.20e-21 93.6
Msa0409000 MtrunA17_Chr5g0419151 28.302 265 175 6 52 308 110 367 3.40e-21 92.4
Msa0409000 MtrunA17_Chr8g0390761 27.969 261 174 6 42 296 191 443 4.87e-21 92.8
Msa0409000 MtrunA17_Chr8g0386441 30.686 277 174 9 42 308 161 429 5.17e-21 92.8
Msa0409000 MtrunA17_Chr5g0395911 28.283 297 187 12 31 308 124 413 5.60e-21 92.4
Msa0409000 MtrunA17_Chr2g0312941 30.868 311 174 14 27 303 145 448 7.04e-21 92.4
Msa0409000 MtrunA17_Chr2g0310821 30.420 286 174 11 32 308 173 442 8.10e-21 92.0
Msa0409000 MtrunA17_Chr2g0310801 31.392 309 171 12 25 308 141 433 1.29e-20 91.7
Msa0409000 MtrunA17_Chr5g0434411 27.273 297 182 11 32 308 155 437 1.49e-20 91.3
Msa0409000 MtrunA17_Chr2g0311451 28.873 284 185 9 35 308 159 435 1.65e-20 91.3
Msa0409000 MtrunA17_Chr6g0486981 28.912 294 186 11 28 308 153 436 6.09e-20 89.7
Msa0409000 MtrunA17_Chr1g0179091 31.429 245 141 11 75 308 138 366 7.04e-20 89.0
Msa0409000 MtrunA17_Chr1g0189381 28.146 302 175 12 33 308 144 429 8.76e-20 89.4
Msa0409000 MtrunA17_Chr2g0307461 29.630 297 179 11 34 308 142 430 1.40e-19 88.6
Msa0409000 MtrunA17_Chr5g0395891 27.303 304 190 12 27 308 18 312 1.41e-19 87.4
Msa0409000 MtrunA17_Chr1g0179751 27.273 297 183 10 34 308 184 469 2.05e-18 85.5
Msa0409000 MtrunA17_Chr2g0320621 26.048 334 191 11 19 309 118 438 2.30e-18 85.1
Msa0409000 MtrunA17_Chr5g0395871 30.357 280 176 11 40 308 153 424 4.01e-18 84.3
Msa0409000 MtrunA17_Chr3g0110191 27.000 300 191 11 28 308 148 438 1.03e-17 83.2
Msa0409000 MtrunA17_Chr3g0133071 29.412 306 185 12 24 309 144 438 1.14e-17 83.2
Msa0409000 MtrunA17_Chr7g0221681 27.152 302 175 12 35 308 149 433 1.65e-17 82.8
Msa0409000 MtrunA17_Chr6g0487471 29.787 282 179 8 40 308 159 434 1.75e-17 82.4
Msa0409000 MtrunA17_Chr4g0027681 26.888 331 191 12 19 309 118 437 1.92e-17 82.4
Msa0409000 MtrunA17_Chr8g0352691 29.630 270 167 10 50 308 2 259 6.49e-17 79.0
Msa0409000 MtrunA17_Chr6g0457401 29.391 279 179 9 40 308 166 436 8.67e-16 77.4
Msa0409000 MtrunA17_Chr4g0061641 31.183 279 169 10 42 308 129 396 1.60e-15 76.6
Msa0409000 MtrunA17_Chr5g0434441 27.609 297 183 11 32 308 142 426 1.94e-15 76.3
Msa0409000 MtrunA17_Chr4g0023351 36.054 147 83 5 35 172 127 271 3.85e-15 74.3
Msa0409000 MtrunA17_Chr7g0267171 26.592 267 162 10 67 309 210 466 8.05e-15 74.7
Msa0409000 MtrunA17_Chr4g0053721 26.351 296 191 12 34 308 141 430 5.65e-14 72.4
Msa0409000 MtrunA17_Chr4g0056211 27.431 288 162 12 60 308 191 470 1.00e-13 71.2
Msa0409000 MtrunA17_Chr7g0249451 25.850 294 176 12 41 308 153 430 4.65e-12 66.2
Msa0409000 MtrunA17_Chr5g0401601 25.763 295 194 11 34 308 149 438 5.09e-12 66.6
Msa0409000 MtrunA17_Chr5g0399171 25.581 301 175 13 48 308 178 469 7.47e-12 65.9
Msa0409000 MtrunA17_Chr4g0065581 26.966 267 157 8 76 305 174 439 3.20e-11 63.9
Msa0409000 MtrunA17_Chr6g0484731 23.411 299 185 11 40 308 266 550 3.85e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0409000 AT5G10770.1 56.934 274 112 2 35 308 206 473 2.93e-106 318
Msa0409000 AT5G10760.1 48.746 279 133 5 31 308 195 464 8.32e-79 247
Msa0409000 AT1G79720.1 40.074 272 154 5 42 309 217 483 6.31e-54 183
Msa0409000 AT3G61820.1 40.138 289 157 9 31 308 200 483 4.12e-44 157
Msa0409000 AT1G01300.1 38.062 289 162 8 29 308 204 484 1.39e-43 155
Msa0409000 AT3G20015.1 36.727 275 160 6 41 308 203 470 2.55e-40 147
Msa0409000 AT1G25510.1 37.801 291 157 9 31 308 204 483 2.17e-36 136
Msa0409000 AT2G03200.1 33.677 291 169 9 35 308 175 458 2.16e-35 133
Msa0409000 AT3G54400.1 32.534 292 170 13 29 308 148 424 9.36e-34 128
Msa0409000 AT1G09750.1 32.646 291 169 13 33 309 172 449 1.63e-32 125
Msa0409000 AT3G18490.1 34.576 295 160 9 33 308 220 500 7.68e-32 124
Msa0409000 AT3G59080.1 30.872 298 184 8 31 308 237 532 1.51e-30 120
Msa0409000 AT2G42980.1 31.561 301 180 10 31 308 227 524 4.76e-30 119
Msa0409000 AT3G59080.2 30.450 289 180 7 39 308 210 496 1.59e-28 115
Msa0409000 AT3G25700.1 28.070 285 186 6 42 308 166 449 3.47e-26 107
Msa0409000 AT1G64830.1 31.399 293 174 9 30 308 149 428 1.26e-25 106
Msa0409000 AT5G33340.1 30.634 284 179 9 35 308 159 434 2.69e-23 99.8
Msa0409000 AT5G07030.1 31.293 294 174 11 29 308 175 454 1.66e-22 97.4
Msa0409000 AT3G12700.1 27.148 291 187 10 35 308 178 460 4.56e-21 93.6
Msa0409000 AT1G66180.1 28.904 301 175 14 32 308 141 426 1.99e-20 91.3
Msa0409000 AT4G30040.1 28.667 300 161 10 34 303 151 427 2.18e-20 91.3
Msa0409000 AT1G65240.1 27.273 286 176 10 42 308 154 426 2.70e-20 91.3
Msa0409000 AT2G28040.1 28.239 301 189 11 24 308 101 390 2.92e-20 90.5
Msa0409000 AT2G28040.2 28.239 301 189 11 24 308 92 381 3.36e-20 90.5
Msa0409000 AT2G28220.1 27.723 303 187 13 28 309 107 398 1.92e-19 88.2
Msa0409000 AT1G08210.3 27.972 286 177 11 42 308 213 488 3.64e-19 88.2
Msa0409000 AT2G28010.1 26.936 297 193 10 28 309 105 392 4.31e-19 87.4
Msa0409000 AT1G08210.4 27.972 286 177 11 42 308 199 474 4.53e-19 87.8
Msa0409000 AT1G08210.1 27.972 286 177 11 42 308 165 440 5.25e-19 87.4
Msa0409000 AT2G28225.1 28.053 303 186 13 28 309 107 398 1.20e-18 85.9
Msa0409000 AT5G37540.1 25.753 299 190 12 32 309 152 439 2.82e-18 85.1
Msa0409000 AT2G23945.1 28.425 292 175 12 39 308 169 448 2.97e-18 85.1
Msa0409000 AT2G28030.1 26.936 297 193 10 28 309 101 388 3.47e-18 84.7
Msa0409000 AT1G05840.1 27.797 295 169 12 41 308 161 438 3.54e-18 85.1
Msa0409000 AT3G02740.1 26.644 289 177 13 42 308 164 439 3.99e-18 85.1
Msa0409000 AT3G02740.2 26.644 289 177 13 42 308 89 364 5.58e-18 84.3
Msa0409000 AT4G30030.1 28.671 286 176 12 39 309 148 420 6.79e-18 84.0
Msa0409000 AT5G43100.1 26.936 297 178 12 35 308 137 417 1.53e-16 80.5
Msa0409000 AT5G43100.2 26.936 297 178 12 35 308 137 417 1.63e-16 80.1
Msa0409000 AT5G36260.1 24.585 301 191 11 30 308 147 433 3.24e-16 79.3
Msa0409000 AT2G35615.1 26.102 295 191 9 35 308 155 443 1.11e-15 77.4
Msa0409000 AT1G31450.1 26.190 294 190 10 35 308 155 441 2.64e-15 76.6
Msa0409000 AT1G08210.2 27.897 233 143 8 42 258 165 388 2.70e-15 76.6
Msa0409000 AT3G50050.1 28.378 296 177 13 35 308 154 436 5.24e-15 75.9
Msa0409000 AT5G45120.1 27.508 309 179 17 36 308 179 478 1.27e-14 74.7
Msa0409000 AT1G49050.2 23.232 297 189 12 42 308 108 395 1.03e-13 71.6
Msa0409000 AT1G49050.1 23.232 297 189 12 42 308 281 568 1.80e-13 71.2
Msa0409000 AT3G52500.1 25.623 281 176 11 54 308 194 467 5.59e-13 69.7
Msa0409000 AT5G02190.1 26.433 314 184 16 32 309 141 443 9.16e-12 65.9
Msa0409000 AT4G12920.1 20.962 291 200 9 27 308 118 387 2.21e-11 64.3

Find 122 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTTCTGTCATTAATTTA+AGG 0.141308 3_2:+49297140 Msa0409000:three_prime_UTR
CTGATGCATATTGTTATAAT+TGG 0.147798 3_2:-49294508 None:intergenic
CCTTCCACTTCCAGCGTTAT+TGG 0.163422 3_2:+49296382 Msa0409000:CDS
TTCCATGTTGCTTGATTTCT+TGG 0.164282 3_2:-49297002 None:intergenic
GCAAAGTTACCAGCTATTTA+TGG 0.167151 3_2:+49294546 Msa0409000:five_prime_UTR
GATACTTCGCCATTTCTTTC+CGG 0.217669 3_2:-49296648 None:intergenic
GATAGTGATATTACTATCTT+TGG 0.232623 3_2:+49296853 Msa0409000:CDS
GCTATTTATGGTAACCATAT+TGG 0.282596 3_2:+49294558 Msa0409000:five_prime_UTR
TTAACAAAAGCATGTGAATA+TGG 0.301372 3_2:+49296139 Msa0409000:CDS
GCGAAGTATCCAGCTGCTTC+GGG 0.312519 3_2:+49296661 Msa0409000:CDS
AATTGCGTCCGTTGGCGTTA+TGG 0.323670 3_2:-49296218 None:intergenic
AATAGTTCCCTGTTCCAATA+TGG 0.325471 3_2:-49294572 None:intergenic
TTCCTCCCATGTTGTTTCAT+TGG 0.336348 3_2:-49288917 None:intergenic
TGATATTGAAAGCTTGGTTT+TGG 0.341030 3_2:-49296530 None:intergenic
TAACAATATGCATCAGGAAT+TGG 0.341210 3_2:+49294515 Msa0409000:five_prime_UTR
GGCGAAGTATCCAGCTGCTT+CGG 0.345692 3_2:+49296660 Msa0409000:CDS
GATGTTGGTGGTGGTAAGAT+TGG 0.347346 3_2:+49296910 Msa0409000:CDS
TTTGTTAATGCCGAACATTT+TGG 0.351053 3_2:-49296124 None:intergenic
GGCGCCACCGAAGGAGAAAA+TGG 0.359106 3_2:-49296557 None:intergenic
CCAAAGACAAAACTAATCTT+TGG 0.360134 3_2:-49296739 None:intergenic
ACGCCAACGGACGCAATTGA+TGG 0.361135 3_2:+49296223 Msa0409000:CDS
GTTGGCCACCTTGTTATTAT+CGG 0.363494 3_2:-49296425 None:intergenic
CAATAAGAAGTAGACTTTGA+TGG 0.365088 3_2:-49294726 None:intergenic
GATACATGCTATGATCTTAG+AGG 0.365828 3_2:+49296697 Msa0409000:CDS
TATGGTAACCATATTGGAAC+AGG 0.376024 3_2:+49294564 Msa0409000:five_prime_UTR
GTTATTGGCCACCTCACATT+TGG 0.379377 3_2:+49296397 Msa0409000:CDS
TAGGGCTTGGTACTCCTAAA+AGG 0.381666 3_2:+49294604 Msa0409000:five_prime_UTR
GGAGGATGATATTGAAAGCT+TGG 0.382168 3_2:-49296536 None:intergenic
GTTTGTTGGACGAAAGAGAT+TGG 0.382411 3_2:-49296322 None:intergenic
CTTTGCCATTGTTATTCAGT+TGG 0.387737 3_2:-49294410 None:intergenic
AACGATGTCAAGACCGTAGA+AGG 0.398374 3_2:-49296494 None:intergenic
ATTGTTATAATTGGATAGCT+TGG 0.398482 3_2:-49294499 None:intergenic
TTGTTGCTGGCAATCGTTCA+TGG 0.400448 3_2:+49297091 Msa0409000:three_prime_UTR
GAGTTCGAGGCAAGTTTGTT+TGG 0.405591 3_2:+49296810 Msa0409000:CDS
GGCATGTCTGCCGGCATATT+AGG 0.407159 3_2:+49296286 Msa0409000:CDS
TTTGCCATTGTTATTCAGTT+GGG 0.407382 3_2:-49294409 None:intergenic
CTAGCCTTCGTCATGCATTC+CGG 0.407455 3_2:+49296629 Msa0409000:CDS
GGTTGTGGAAATTGAACTAT+TGG 0.410781 3_2:+49297053 Msa0409000:three_prime_UTR
ATGTTGGTGGTGGTAAGATT+GGG 0.410974 3_2:+49296911 Msa0409000:CDS
GCAAGTTTGTTTGGCATTTG+CGG 0.411089 3_2:+49296819 Msa0409000:CDS
ACTACGTGAGATTGTGGATA+AGG 0.413646 3_2:-49296467 None:intergenic
TTCTTAAACTTGATAAAGAA+AGG 0.414261 3_2:+49294460 Msa0409000:five_prime_UTR
AGTGTATTTAACGGCGTTGT+TGG 0.416296 3_2:-49296443 None:intergenic
TTCACGGCTGAAGTATCCTT+TGG 0.424225 3_2:-49296188 None:intergenic
AAGATTGGGTTTCGTTCAAA+TGG 0.429642 3_2:+49296925 Msa0409000:CDS
GCGTTATGGTTAGTCGTTCA+CGG 0.441094 3_2:-49296204 None:intergenic
TCATGCATTCCGGAAAGAAA+TGG 0.441442 3_2:+49296639 Msa0409000:CDS
ATAGTGATATTACTATCTTT+GGG 0.452276 3_2:+49296854 Msa0409000:CDS
ATTTGAAACCCCGAAGCAGC+TGG 0.463069 3_2:-49296670 None:intergenic
ACTTGAATATGTGTTGTTGC+TGG 0.466212 3_2:+49297078 Msa0409000:three_prime_UTR
CAATTATAACAATATGCATC+AGG 0.473980 3_2:+49294509 Msa0409000:five_prime_UTR
CAATACAACCAAGGTCTGTT+CGG 0.478376 3_2:+49296265 Msa0409000:CDS
CTACGTGAGATTGTGGATAA+GGG 0.480711 3_2:-49296466 None:intergenic
CTAGAGGTTGTTTATGATGT+TGG 0.484309 3_2:+49296895 Msa0409000:CDS
GGTGGTGTCACAGTGGAGCT+TGG 0.484509 3_2:+49296763 Msa0409000:CDS
GGTCTGTTCGGCATGTCTGC+CGG 0.485877 3_2:+49296277 Msa0409000:CDS
TTGTTATTCAGTTGGGAACA+TGG 0.486548 3_2:-49294402 None:intergenic
TCTGCCGGCATATTAGGCCT+TGG 0.494138 3_2:+49296292 Msa0409000:CDS
AGTATCCTTTGGAGAAGGAT+TGG 0.501167 3_2:-49296177 None:intergenic
TTAGATGTGGTACACAAGCT+TGG 0.506254 3_2:+49294378 Msa0409000:five_prime_UTR
ACAGTGGAGCTTGGTGCACA+CGG 0.506280 3_2:+49296772 Msa0409000:CDS
TAGATGTGGTACACAAGCTT+GGG 0.510764 3_2:+49294379 Msa0409000:five_prime_UTR
AATGGATCCTCCAAAATGTT+CGG 0.511137 3_2:+49296114 Msa0409000:intron
GTGGCCAATAACGCTGGAAG+TGG 0.517266 3_2:-49296386 None:intergenic
GTTGTTTATGATGTTGGTGG+TGG 0.521861 3_2:+49296901 Msa0409000:CDS
GAGGTTGTTTATGATGTTGG+TGG 0.521866 3_2:+49296898 Msa0409000:CDS
TGTATTGCCCACAACCGAAA+AGG 0.522205 3_2:-49296249 None:intergenic
TTCTACGGTCTTGACATCGT+TGG 0.522510 3_2:+49296496 Msa0409000:CDS
TCACGTAGTAATTCCTTCTA+CGG 0.522886 3_2:+49296481 Msa0409000:CDS
GGATAAGGGAGTGTATTTAA+CGG 0.524324 3_2:-49296452 None:intergenic
GTAGAGCTGCAGGAAGATGA+TGG 0.527914 3_2:-49288973 None:intergenic
TCTTAAACTTGATAAAGAAA+GGG 0.529667 3_2:+49294461 Msa0409000:five_prime_UTR
TCTTCCTGCAGCTCTACAAA+AGG 0.530143 3_2:+49288979 Msa0409000:five_prime_UTR
TCTTAGAGGGAGGGAAAATG+TGG 0.532550 3_2:+49296711 Msa0409000:CDS
TGTGAGGTGGCCAATAACGC+TGG 0.539085 3_2:-49296392 None:intergenic
GGAATTACTACGTGAGATTG+TGG 0.541847 3_2:-49296473 None:intergenic
CAAACTTGCCTCGAACTCAC+AGG 0.544943 3_2:-49296805 None:intergenic
ATACTGGTAGCGATCTCACT+TGG 0.545729 3_2:+49294646 Msa0409000:five_prime_UTR
ATATGGTTACCATAAATAGC+TGG 0.551184 3_2:-49294555 None:intergenic
TTAAGAATATCATCGTGTGT+TGG 0.554209 3_2:-49294444 None:intergenic
GTCAATGATGGCGCCACCGA+AGG 0.564071 3_2:-49296566 None:intergenic
ACGACCAAGGCCTAATATGC+CGG 0.564153 3_2:-49296296 None:intergenic
CAGACATGCCGAACAGACCT+TGG 0.571057 3_2:-49296273 None:intergenic
AAACCATCAATTGCGTCCGT+TGG 0.576106 3_2:-49296226 None:intergenic
CAGTGGAGCTTGGTGCACAC+GGG 0.577773 3_2:+49296773 Msa0409000:CDS
TCATCTTGCTGTGTGTAACA+AGG 0.580818 3_2:-49294693 None:intergenic
GCTGAAGTATCCTTTGGAGA+AGG 0.584834 3_2:-49296182 None:intergenic
GGTGGCGCCATCATTGACTC+TGG 0.585383 3_2:+49296571 Msa0409000:CDS
GACAGTACCAGAGTCAATGA+TGG 0.592119 3_2:-49296578 None:intergenic
GAGAGCTGATGCTAACAAGA+TGG 0.592360 3_2:-49288945 None:intergenic
ATACATGCTATGATCTTAGA+GGG 0.604390 3_2:+49296698 Msa0409000:CDS
AAACTTGCCTCGAACTCACA+GGG 0.605730 3_2:-49296804 None:intergenic
CATTTGCCAATGAAACAACA+TGG 0.606235 3_2:+49288911 Msa0409000:five_prime_UTR
CGAAGTATCCAGCTGCTTCG+GGG 0.609858 3_2:+49296662 Msa0409000:CDS
AAGAAAAGCATCATTAGATG+TGG 0.610124 3_2:+49294365 Msa0409000:five_prime_UTR
ATGCTATGATCTTAGAGGGA+GGG 0.613433 3_2:+49296702 Msa0409000:CDS
ACTCAACTATCTTCATCCAC+AGG 0.613837 3_2:+49294777 Msa0409000:CDS
CCAATAACGCTGGAAGTGGA+AGG 0.616792 3_2:-49296382 None:intergenic
ATCCAAGAAATCAAGCAACA+TGG 0.617211 3_2:+49297000 Msa0409000:three_prime_UTR
AGTGACCAATCCTTCTCCAA+AGG 0.622469 3_2:+49296172 Msa0409000:CDS
CTTTCCGGAATGCATGACGA+AGG 0.622682 3_2:-49296633 None:intergenic
GTGTAACAAGGACGAGCACA+AGG 0.637868 3_2:-49294681 None:intergenic
TGCCAATGAAACAACATGGG+AGG 0.644807 3_2:+49288915 Msa0409000:five_prime_UTR
CGGTAGCTCCAAATGTGAGG+TGG 0.648081 3_2:-49296405 None:intergenic
AGTGGAGCTTGGTGCACACG+GGG 0.662193 3_2:+49296774 Msa0409000:CDS
ACGACTAACCATAACGCCAA+CGG 0.663534 3_2:+49296210 Msa0409000:CDS
AAGAGATTGGATGACGACCA+AGG 0.664701 3_2:-49296309 None:intergenic
TGTTCCCAACTGAATAACAA+TGG 0.664710 3_2:+49294405 Msa0409000:five_prime_UTR
TATCGGTAGCTCCAAATGTG+AGG 0.668784 3_2:-49296408 None:intergenic
CTTTGGTGGTGGTGTCACAG+TGG 0.671474 3_2:+49296756 Msa0409000:CDS
CGAAGGCTAGCATAGGCAGA+CGG 0.674059 3_2:-49296616 None:intergenic
CATGCTATGATCTTAGAGGG+AGG 0.678035 3_2:+49296701 Msa0409000:CDS
TGCATGACGAAGGCTAGCAT+AGG 0.681279 3_2:-49296623 None:intergenic
TGGAGCTACCGATAATAACA+AGG 0.681509 3_2:+49296417 Msa0409000:CDS
AGGCTAGCATAGGCAGACGG+CGG 0.684561 3_2:-49296613 None:intergenic
ATGGTAACCATATTGGAACA+GGG 0.688291 3_2:+49294565 Msa0409000:five_prime_UTR
TGTGCAACAAAGAACACTAG+AGG 0.689240 3_2:+49296879 Msa0409000:CDS
GGTTGTGGGCAATACAACCA+AGG 0.693092 3_2:+49296256 Msa0409000:CDS
ATTTGCCAATGAAACAACAT+GGG 0.698868 3_2:+49288912 Msa0409000:five_prime_UTR
ACTCTGGTACTGTCATTACA+CGG 0.698917 3_2:+49296587 Msa0409000:CDS
GCCACCGAAGGAGAAAATGG+AGG 0.718357 3_2:-49296554 None:intergenic
AGCTACCGATAATAACAAGG+TGG 0.756055 3_2:+49296420 Msa0409000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAAAATAAAAAAT+AGG - chr3_2:49290087-49290106 None:intergenic 0.0%
!!! TATTTAAAATTTTAAAAATT+TGG + chr3_2:49290512-49290531 Msa0409000:intron 0.0%
!! ATAAAAAAATAAAAAATTAT+TGG + chr3_2:49291872-49291891 Msa0409000:intron 0.0%
!! TAAAAAAATAAAAAATTATT+GGG + chr3_2:49291873-49291892 Msa0409000:intron 0.0%
!! TAAATTAAATTAAATTAAAT+TGG - chr3_2:49293596-49293615 None:intergenic 0.0%
!! ATTATATTATATATTTATTA+TGG + chr3_2:49294807-49294826 Msa0409000:intron 0.0%
!!! TATTTTTTTTATTTTTAATA+TGG + chr3_2:49295221-49295240 Msa0409000:intron 0.0%
!!! ATTTTTTTTATTTTTAATAT+GGG + chr3_2:49295222-49295241 Msa0409000:intron 0.0%
!! AATTAAGTTTATAATACATT+GGG - chr3_2:49289034-49289053 None:intergenic 10.0%
!! TAATTAAGTTTATAATACAT+TGG - chr3_2:49289035-49289054 None:intergenic 10.0%
!! TAACTATAAATAAGTTAATT+AGG - chr3_2:49289205-49289224 None:intergenic 10.0%
!! TAATAATAGAAAACAATTAT+TGG + chr3_2:49289696-49289715 Msa0409000:intron 10.0%
!!! TTTTTTCAAAACAAAAAAAA+TGG - chr3_2:49291315-49291334 None:intergenic 10.0%
!! TTGAAAAAATTAAAAAAAAG+AGG + chr3_2:49290138-49290157 Msa0409000:intron 10.0%
!! TGAAAAAATTAAAAAAAAGA+GGG + chr3_2:49290139-49290158 Msa0409000:intron 10.0%
!! TAAAAAATTAGAAAAAAGTT+CGG + chr3_2:49290389-49290408 Msa0409000:intron 10.0%
!!! TTTAGTTTAATTAAAAATTC+AGG + chr3_2:49290613-49290632 Msa0409000:intron 10.0%
!!! TATTTAAAATTTTCAAAATC+TGG - chr3_2:49290871-49290890 None:intergenic 10.0%
!! TAGAAGATATTTAAAAATAA+TGG - chr3_2:49290952-49290971 None:intergenic 10.0%
!! TTGAAAAAATTAAAAAAAGA+GGG - chr3_2:49291304-49291323 None:intergenic 10.0%
!! TTTGAAAAAATTAAAAAAAG+AGG - chr3_2:49291305-49291324 None:intergenic 10.0%
!!! TTTTCAAAACAAAAAAAAAA+TGG + chr3_2:49291317-49291336 Msa0409000:intron 10.0%
!! ATATATGATCTATTATATAA+GGG - chr3_2:49291675-49291694 None:intergenic 10.0%
!! TATATATGATCTATTATATA+AGG - chr3_2:49291676-49291695 None:intergenic 10.0%
!! AAAATAAATTAAACAATTCA+TGG + chr3_2:49292073-49292092 Msa0409000:intron 10.0%
!! AAATAAATTAAACAATTCAT+GGG + chr3_2:49292074-49292093 Msa0409000:intron 10.0%
!!! CTTTTGTTATTTTTTATAAA+AGG - chr3_2:49292420-49292439 None:intergenic 10.0%
!! ATTAAAGATATATATTCAAT+TGG - chr3_2:49294129-49294148 None:intergenic 10.0%
!!! TTTTATTATTAATAAAATGG+AGG + chr3_2:49295177-49295196 Msa0409000:intron 10.0%
!! AAGTTTATAAAAGAAAATTA+AGG + chr3_2:49295320-49295339 Msa0409000:intron 10.0%
!! GTTAAAATTAAATAAAATCA+AGG + chr3_2:49295347-49295366 Msa0409000:intron 10.0%
!! ACTGAAAAAAAAAAAAATAT+AGG + chr3_2:49295485-49295504 Msa0409000:intron 10.0%
!!! TAAAATAATTGTATTTTGAT+CGG + chr3_2:49297032-49297051 Msa0409000:three_prime_UTR 10.0%
!!! TTTTTTTTTTATATGTAGTT+TGG + chr3_2:49297199-49297218 Msa0409000:three_prime_UTR 10.0%
!! GTATTATAAACTTAATTAGT+TGG + chr3_2:49289037-49289056 Msa0409000:intron 15.0%
!! AACTTATTTATAGTTAATCT+TGG + chr3_2:49289209-49289228 Msa0409000:intron 15.0%
!! ACTTATTTATAGTTAATCTT+GGG + chr3_2:49289210-49289229 Msa0409000:intron 15.0%
!! AATAAATAAGGATATAATAG+TGG - chr3_2:49289340-49289359 None:intergenic 15.0%
!! TCATAGAAGTTATAAATAAA+AGG - chr3_2:49289629-49289648 None:intergenic 15.0%
!!! TAACTTCTATGATAATTTTA+AGG + chr3_2:49289637-49289656 Msa0409000:intron 15.0%
!!! AATTGTTTTCTATTATTACT+TGG - chr3_2:49289694-49289713 None:intergenic 15.0%
!! ATTAAGCCTTAATAATATTA+AGG - chr3_2:49289852-49289871 None:intergenic 15.0%
!! AATCTAATAATTTAATGATG+TGG - chr3_2:49290272-49290291 None:intergenic 15.0%
!! TAGAAGATATTTAAAAATAC+TGG + chr3_2:49290427-49290446 Msa0409000:intron 15.0%
!!! TTTAATTTTTCGATTGTAAT+TGG - chr3_2:49290557-49290576 None:intergenic 15.0%
!!! TTTAATTTTCATACTGTAAT+TGG + chr3_2:49290827-49290846 Msa0409000:intron 15.0%
!! ATTAAAATGATTTAATGATG+TGG + chr3_2:49291163-49291182 Msa0409000:intron 15.0%
!! GAAAAAAATACTGAAAAAAT+TGG - chr3_2:49291256-49291275 None:intergenic 15.0%
!! AAAAATAAAAAATTATTGGG+CGG + chr3_2:49291876-49291895 Msa0409000:intron 15.0%
!! TATTATATAGATTTATGATG+AGG - chr3_2:49292358-49292377 None:intergenic 15.0%
!! AAATAACAAAAGATCAAATT+TGG + chr3_2:49292428-49292447 Msa0409000:intron 15.0%
!! TGAAATCTAAATACAAATTT+AGG + chr3_2:49292495-49292514 Msa0409000:intron 15.0%
!!! CAATTTTCTTTTTTATTTTG+AGG - chr3_2:49292551-49292570 None:intergenic 15.0%
!! CTCAAAATAAAAAAGAAAAT+TGG + chr3_2:49292549-49292568 Msa0409000:intron 15.0%
!! TATAAAAATAACTACAAAGA+GGG - chr3_2:49292775-49292794 None:intergenic 15.0%
!! ATATAAAAATAACTACAAAG+AGG - chr3_2:49292776-49292795 None:intergenic 15.0%
!! ATATAATAGTAGTATAGTTA+GGG - chr3_2:49292909-49292928 None:intergenic 15.0%
!!! TATACATATATTTTTTTTGG+TGG + chr3_2:49293993-49294012 Msa0409000:intron 15.0%
!!! CTTTTTTTTTTTTTTTGTTG+AGG - chr3_2:49295037-49295056 None:intergenic 15.0%
!! CTCAACAAAAAAAAAAAAAA+AGG + chr3_2:49295035-49295054 Msa0409000:intron 15.0%
!!! TTAAAATGTCTCATTTTTAT+AGG + chr3_2:49295251-49295270 Msa0409000:intron 15.0%
!!! TTTTCTTTTATAAACTTTAC+AGG - chr3_2:49295317-49295336 None:intergenic 15.0%
!! TAAAGGATTAAACAAATTAA+GGG - chr3_2:49295710-49295729 None:intergenic 15.0%
!! TTAAAGGATTAAACAAATTA+AGG - chr3_2:49295711-49295730 None:intergenic 15.0%
!!! ATATTATTTGTTTTGAAAGA+AGG + chr3_2:49295793-49295812 Msa0409000:intron 15.0%
!!! ATAAATTCATTTTGTTATGT+AGG + chr3_2:49296091-49296110 Msa0409000:intron 15.0%
!!! AATTTTGTTGAATTTTTTAG+AGG - chr3_2:49296347-49296366 None:intergenic 15.0%
!! CTATAAACTAGATACATAAT+TGG + chr3_2:49289138-49289157 Msa0409000:intron 20.0%
!! AAAAATAATAAATGCTGCAT+TGG - chr3_2:49289316-49289335 None:intergenic 20.0%
!! TGGATGTAATTCAATAAATA+AGG - chr3_2:49289352-49289371 None:intergenic 20.0%
!! AAATTAACTTCACTAGTTAT+TGG - chr3_2:49289586-49289605 None:intergenic 20.0%
!! AAGTTATAAATAAAAGGAAG+AGG - chr3_2:49289623-49289642 None:intergenic 20.0%
!! TATTATTACTTGGATAAATG+TGG - chr3_2:49289684-49289703 None:intergenic 20.0%
!! TAATAGAAAACAATTATTGG+TGG + chr3_2:49289699-49289718 Msa0409000:intron 20.0%
!! AATAGAAAACAATTATTGGT+GGG + chr3_2:49289700-49289719 Msa0409000:intron 20.0%
!! GTTTCACTAAAAAAAATATG+AGG - chr3_2:49289825-49289844 None:intergenic 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG - chr3_2:49291523-49291542 None:intergenic 20.0%
!!! TTATGCGAAAATTTTTTTTC+CGG - chr3_2:49290231-49290250 None:intergenic 20.0%
!!! TTTTTGCGAAATAAAAAAAC+TGG + chr3_2:49290485-49290504 Msa0409000:intron 20.0%
!!! AATTTTAGTTCAAAAGAGAT+TGG - chr3_2:49290772-49290791 None:intergenic 20.0%
!!! AATAGGCTTAATATTACTTT+TGG + chr3_2:49291371-49291390 Msa0409000:intron 20.0%
!!! TTTTGTAGTTTTCAAAGATA+GGG + chr3_2:49291523-49291542 Msa0409000:intron 20.0%
!! ATAGGAGAACAATTAATAAT+AGG - chr3_2:49291599-49291618 None:intergenic 20.0%
!!! ACATATTTGTACACATTTTA+AGG + chr3_2:49291621-49291640 Msa0409000:intron 20.0%
!!! CATATTTGTACACATTTTAA+GGG + chr3_2:49291622-49291641 Msa0409000:intron 20.0%
!! AAAATAAAAAATTATTGGGC+GGG + chr3_2:49291877-49291896 Msa0409000:intron 20.0%
!!! AATTTTGTATGAATTACGTA+TGG + chr3_2:49291967-49291986 Msa0409000:intron 20.0%
!!! GTTTTAAAGTTGATGTTTTT+TGG + chr3_2:49292016-49292035 Msa0409000:intron 20.0%
!!! GTTTTTTGGTAATTAAGAAA+AGG + chr3_2:49292030-49292049 Msa0409000:intron 20.0%
!!! TTTATTTTGAGGATGTTTTT+TGG - chr3_2:49292540-49292559 None:intergenic 20.0%
!!! GATTAGATATTTTGTGTTTT+AGG + chr3_2:49292583-49292602 Msa0409000:intron 20.0%
!! ATAGAAATACTTGGTTTAAA+GGG - chr3_2:49292803-49292822 None:intergenic 20.0%
!! TATAGAAATACTTGGTTTAA+AGG - chr3_2:49292804-49292823 None:intergenic 20.0%
!! CATATAATAGTAGTATAGTT+AGG - chr3_2:49292910-49292929 None:intergenic 20.0%
!!! TTTAAAACTTAATAGAGTCA+TGG - chr3_2:49293802-49293821 None:intergenic 20.0%
!!! AATTTTTTTTTTTTGGTGAC+CGG + chr3_2:49293879-49293898 Msa0409000:intron 20.0%
!! TTCTTAAACTTGATAAAGAA+AGG + chr3_2:49294460-49294479 Msa0409000:five_prime_UTR 20.0%
!! TCTTAAACTTGATAAAGAAA+GGG + chr3_2:49294461-49294480 Msa0409000:five_prime_UTR 20.0%
!!! TAATATAATTTGTATACCTG+TGG - chr3_2:49294796-49294815 None:intergenic 20.0%
!!! AAAATGAGACATTTTAAGTT+TGG - chr3_2:49295248-49295267 None:intergenic 20.0%
!!! TTATAAACTTTACAGGTTTT+AGG - chr3_2:49295310-49295329 None:intergenic 20.0%
!! AAAAATATAGGAACACAAAA+TGG + chr3_2:49295497-49295516 Msa0409000:intron 20.0%
!! TTCAATATTCAAACAAATTC+TGG + chr3_2:49295684-49295703 Msa0409000:intron 20.0%
!! ATGTAATTGAAGTTTCTAAA+CGG - chr3_2:49295917-49295936 None:intergenic 20.0%
!!! TAAATTTTGTTGAGGAAATT+CGG - chr3_2:49295940-49295959 None:intergenic 20.0%
!!! CAAGTAAATAAATTTTGTTG+AGG - chr3_2:49295948-49295967 None:intergenic 20.0%
!! ATAGTGATATTACTATCTTT+GGG + chr3_2:49296854-49296873 Msa0409000:CDS 20.0%
!!! TTGTTTCTGTCATTAATTTA+AGG + chr3_2:49297140-49297159 Msa0409000:three_prime_UTR 20.0%
!! TCTCTTTTTCTTATGCTTTT+TGG + chr3_2:49288882-49288901 Msa0409000:five_prime_UTR 25.0%
! ATAAACTTAATTAGTTGGAG+TGG + chr3_2:49289042-49289061 Msa0409000:intron 25.0%
!! TCTAGTTTATAGCAAATCTA+TGG - chr3_2:49289130-49289149 None:intergenic 25.0%
!!! TTGGTAGTGACATAAATTAA+AGG + chr3_2:49289157-49289176 Msa0409000:intron 25.0%
!!! ATTAATTGTGTTGATTCCAA+TGG - chr3_2:49289434-49289453 None:intergenic 25.0%
! ACTCCTCCTTAATATTATTA+AGG + chr3_2:49289843-49289862 Msa0409000:intron 25.0%
! AAGCCTTAATAATATTAAGG+AGG - chr3_2:49289849-49289868 None:intergenic 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG - chr3_2:49291524-49291543 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG - chr3_2:49291522-49291541 None:intergenic 25.0%
! TTCTTGCGAAATAAAAAAAC+TGG - chr3_2:49290898-49290917 None:intergenic 25.0%
!! GTTTTGTAGTTTTCAAAGAT+AGG + chr3_2:49291522-49291541 Msa0409000:intron 25.0%
!! TTTGTAGTTTTCAAAGATAG+GGG + chr3_2:49291524-49291543 Msa0409000:intron 25.0%
! ATGTGTACAAATATGTGTAT+AGG - chr3_2:49291617-49291636 None:intergenic 25.0%
! GAGATATGCATTAATTATGA+TGG + chr3_2:49291749-49291768 Msa0409000:intron 25.0%
!!! TTTCTTAGTTTTACTAGGTT+TGG - chr3_2:49292263-49292282 None:intergenic 25.0%
!! TAAAAGGTTTTCATGTTACT+TGG - chr3_2:49292404-49292423 None:intergenic 25.0%
!! TAAAAAAGAAAATTGGTCTC+TGG + chr3_2:49292556-49292575 Msa0409000:intron 25.0%
!!! GTTTTGGTTAATGAAATGTT+AGG + chr3_2:49292645-49292664 Msa0409000:intron 25.0%
! AAAAAGGATGAAATAGTTGA+TGG + chr3_2:49292725-49292744 Msa0409000:intron 25.0%
! AAAAGGATGAAATAGTTGAT+GGG + chr3_2:49292726-49292745 Msa0409000:intron 25.0%
! TAGAAATACTTGGTTTAAAG+GGG - chr3_2:49292802-49292821 None:intergenic 25.0%
! AGGATGTTTATAGAAATACT+TGG - chr3_2:49292812-49292831 None:intergenic 25.0%
! AATAGTGATAGAAGATGTAA+TGG + chr3_2:49293257-49293276 Msa0409000:intron 25.0%
! CAATAATAAATTGACATCAC+TGG + chr3_2:49293285-49293304 Msa0409000:intron 25.0%
! AAGAAGAATGCATAATATAC+AGG + chr3_2:49293333-49293352 Msa0409000:intron 25.0%
! AGAAGAATGCATAATATACA+GGG + chr3_2:49293334-49293353 Msa0409000:intron 25.0%
! TAGAGAAAAAAGTAGGATAT+TGG - chr3_2:49293419-49293438 None:intergenic 25.0%
! TGCAAAATAGAGAAAAAAGT+AGG - chr3_2:49293426-49293445 None:intergenic 25.0%
! AAGATTGTTCTACAAAGATA+TGG - chr3_2:49293743-49293762 None:intergenic 25.0%
!!! ACATATATTTTTTTTGGTGG+TGG + chr3_2:49293996-49294015 Msa0409000:intron 25.0%
!! ACATTTAAGATGAATAAGTG+AGG - chr3_2:49294261-49294280 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAGTTTAG+TGG - chr3_2:49294294-49294313 None:intergenic 25.0%
!! TCTAATGATGCTTTTCTTTT+TGG - chr3_2:49294363-49294382 None:intergenic 25.0%
! ATTGTTATAATTGGATAGCT+TGG - chr3_2:49294502-49294521 None:intergenic 25.0%
! CTGATGCATATTGTTATAAT+TGG - chr3_2:49294511-49294530 None:intergenic 25.0%
! CAATTATAACAATATGCATC+AGG + chr3_2:49294509-49294528 Msa0409000:five_prime_UTR 25.0%
!! TAAGCAAATTTGAAATTAGC+AGG + chr3_2:49295448-49295467 Msa0409000:intron 25.0%
!!! TTCATTTTGTTATGTAGGAA+TGG + chr3_2:49296096-49296115 Msa0409000:intron 25.0%
!! TTAACAAAAGCATGTGAATA+TGG + chr3_2:49296139-49296158 Msa0409000:CDS 25.0%
!!! TGAATTTTTTAGAGGTTTGT+TGG - chr3_2:49296339-49296358 None:intergenic 25.0%
! GATAGTGATATTACTATCTT+TGG + chr3_2:49296853-49296872 Msa0409000:CDS 25.0%
ATTTGCCAATGAAACAACAT+GGG + chr3_2:49288912-49288931 Msa0409000:five_prime_UTR 30.0%
GTTTATAATACATTGGGAGA+GGG - chr3_2:49289028-49289047 None:intergenic 30.0%
AGTTTATAATACATTGGGAG+AGG - chr3_2:49289029-49289048 None:intergenic 30.0%
TCCACTAACTGCAATTAATA+AGG + chr3_2:49289381-49289400 Msa0409000:intron 30.0%
CCACTAACTGCAATTAATAA+GGG + chr3_2:49289382-49289401 Msa0409000:intron 30.0%
! AATGCCACTAATTTTACCAT+TGG + chr3_2:49289415-49289434 Msa0409000:intron 30.0%
GATTCCAATGGTAAAATTAG+TGG - chr3_2:49289422-49289441 None:intergenic 30.0%
! ATAATCATTTGAGAGTGTGA+TGG - chr3_2:49289530-49289549 None:intergenic 30.0%
!! TGATAATTTTAAGGAGACAG+AGG + chr3_2:49289646-49289665 Msa0409000:intron 30.0%
!! GATAATTTTAAGGAGACAGA+GGG + chr3_2:49289647-49289666 Msa0409000:intron 30.0%
! TTAAGGCTTAATAGCACTTT+TGG + chr3_2:49289860-49289879 Msa0409000:intron 30.0%
! GCAATTTTTGCAAACATAGA+GGG - chr3_2:49289886-49289905 None:intergenic 30.0%
GTTTGCAAAAATTGCGATTA+AGG + chr3_2:49289891-49289910 Msa0409000:intron 30.0%
! TTGTAGTTTTCAAAGATAGG+GGG - chr3_2:49291525-49291544 None:intergenic 30.0%
! AATAGGCTTAATAGCACTTT+TGG - chr3_2:49290070-49290089 None:intergenic 30.0%
TACGAACGAAAACAAAAATC+CGG + chr3_2:49290209-49290228 Msa0409000:intron 30.0%
GTTTGCAAAAATTGCGATTA+AGG - chr3_2:49289891-49289910 None:intergenic 30.0%
! ATCGCAATTTTTGCAAACAT+AGG + chr3_2:49291553-49291572 Msa0409000:intron 30.0%
! TCGCAATTTTTGCAAACATA+GGG + chr3_2:49291554-49291573 Msa0409000:intron 30.0%
! AATAGGCTTAATAGCACTTT+TGG - chr3_2:49290070-49290089 None:intergenic 30.0%
!! TGTACACATTTTAAGGGTTT+TGG + chr3_2:49291628-49291647 Msa0409000:intron 30.0%
TGTATCATATTTATCCAACG+AGG + chr3_2:49292178-49292197 Msa0409000:intron 30.0%
!! TAGTTTTACTAGGTTTGGTT+CGG - chr3_2:49292258-49292277 None:intergenic 30.0%
!!! TCGCTTTTCTTAGTTTTACT+AGG - chr3_2:49292268-49292287 None:intergenic 30.0%
! TTTCATGTTACTTGGTATGT+GGG - chr3_2:49292396-49292415 None:intergenic 30.0%
!! TTTTCATGTTACTTGGTATG+TGG - chr3_2:49292397-49292416 None:intergenic 30.0%
ATTAACCAAAACACAGAACT+TGG - chr3_2:49292637-49292656 None:intergenic 30.0%
TTGGTTAATGAAATGTTAGG+CGG + chr3_2:49292648-49292667 Msa0409000:intron 30.0%
CTGAAGTCTAGTAAATGTTT+GGG + chr3_2:49292749-49292768 Msa0409000:intron 30.0%
GAAGAATGCATAATATACAG+GGG + chr3_2:49293335-49293354 Msa0409000:intron 30.0%
ATTATGATCAATCTCTACGA+AGG - chr3_2:49293661-49293680 None:intergenic 30.0%
ATAATCAGGAACTAATTTGG+AGG + chr3_2:49293848-49293867 Msa0409000:intron 30.0%
CATAATATATGCAATGTTCG+AGG - chr3_2:49293913-49293932 None:intergenic 30.0%
TGAACTTAGCTTATTTGGTA+GGG - chr3_2:49293948-49293967 None:intergenic 30.0%
TGCATAAAATATGCAAGTTC+CGG - chr3_2:49294036-49294055 None:intergenic 30.0%
AACCCTACATATATTATCAG+TGG - chr3_2:49294218-49294237 None:intergenic 30.0%
GAGAAATGAACAATGTTTAG+TGG - chr3_2:49294331-49294350 None:intergenic 30.0%
CATTGTTCATTTCTCAATTC+AGG + chr3_2:49294336-49294355 Msa0409000:intron 30.0%
!! AAGAAAAGCATCATTAGATG+TGG + chr3_2:49294365-49294384 Msa0409000:five_prime_UTR 30.0%
! TTTGCCATTGTTATTCAGTT+GGG - chr3_2:49294412-49294431 None:intergenic 30.0%
TTAAGAATATCATCGTGTGT+TGG - chr3_2:49294447-49294466 None:intergenic 30.0%
TAACAATATGCATCAGGAAT+TGG + chr3_2:49294515-49294534 Msa0409000:five_prime_UTR 30.0%
ATATGGTTACCATAAATAGC+TGG - chr3_2:49294558-49294577 None:intergenic 30.0%
GCTATTTATGGTAACCATAT+TGG + chr3_2:49294558-49294577 Msa0409000:five_prime_UTR 30.0%
!! GGAACTATTTTGTTGTAGTA+GGG + chr3_2:49294586-49294605 Msa0409000:five_prime_UTR 30.0%
!!! TTGTCTCTTGTTTTTGATAC+TGG + chr3_2:49294630-49294649 Msa0409000:five_prime_UTR 30.0%
CAATAAGAAGTAGACTTTGA+TGG - chr3_2:49294729-49294748 None:intergenic 30.0%
ATATTCCTTGACAAGAACTT+AGG + chr3_2:49295004-49295023 Msa0409000:intron 30.0%
ACATGTACACATGATAAAGA+GGG - chr3_2:49295755-49295774 None:intergenic 30.0%
AACATGTACACATGATAAAG+AGG - chr3_2:49295756-49295775 None:intergenic 30.0%
! TTTGTTAATGCCGAACATTT+TGG - chr3_2:49296127-49296146 None:intergenic 30.0%
! TGATATTGAAAGCTTGGTTT+TGG - chr3_2:49296533-49296552 None:intergenic 30.0%
ATACATGCTATGATCTTAGA+GGG + chr3_2:49296698-49296717 Msa0409000:CDS 30.0%
CCAAAGACAAAACTAATCTT+TGG - chr3_2:49296742-49296761 None:intergenic 30.0%
!!! CCAAAGATTAGTTTTGTCTT+TGG + chr3_2:49296739-49296758 Msa0409000:CDS 30.0%
!!! AAGATTAGTTTTGTCTTTGG+TGG + chr3_2:49296742-49296761 Msa0409000:CDS 30.0%
!!! AATTGTATTTTGATCGGTTG+TGG + chr3_2:49297038-49297057 Msa0409000:three_prime_UTR 30.0%
CATTTGCCAATGAAACAACA+TGG + chr3_2:49288911-49288930 Msa0409000:five_prime_UTR 35.0%
CCCTTATTAATTGCAGTTAG+TGG - chr3_2:49289385-49289404 None:intergenic 35.0%
CTCGCAATATTAGTCGTTTA+AGG - chr3_2:49289482-49289501 None:intergenic 35.0%
AAACGACTAATATTGCGAGA+CGG + chr3_2:49289483-49289502 Msa0409000:intron 35.0%
!! AAATCTTATCTCGAGTTGGT+TGG - chr3_2:49289736-49289755 None:intergenic 35.0%
GACAAAATCTTATCTCGAGT+TGG - chr3_2:49289740-49289759 None:intergenic 35.0%
TCTAATGTCTCTTGACTTCT+TGG + chr3_2:49289784-49289803 Msa0409000:intron 35.0%
! CGCAATTTTTGCAAACATAG+AGG - chr3_2:49291555-49291574 None:intergenic 35.0%
CAACGAAAACGAAACATAAG+GGG - chr3_2:49291497-49291516 None:intergenic 35.0%
GCAACGAAAACGAAACATAA+GGG - chr3_2:49291496-49291515 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG - chr3_2:49291495-49291514 None:intergenic 35.0%
! GTTTGCAAAAGTTGCGATTT+TGG - chr3_2:49290039-49290058 None:intergenic 35.0%
! ATCGCAACTTTTGCAAACAT+AGG + chr3_2:49290041-49290060 Msa0409000:intron 35.0%
! TCGCAACTTTTGCAAACATA+GGG + chr3_2:49290042-49290061 Msa0409000:intron 35.0%
CTGAGAAGCTTGAATTACAT+AGG + chr3_2:49290645-49290664 Msa0409000:intron 35.0%
! TTTCGTTTTCGTTGCAGTTT+TGG - chr3_2:49289951-49289970 None:intergenic 35.0%
TGCAACGAAAACGAAACATA+AGG + chr3_2:49291495-49291514 Msa0409000:intron 35.0%
GCAACGAAAACGAAACATAA+GGG + chr3_2:49291496-49291515 Msa0409000:intron 35.0%
CAACGAAAACGAAACATAAG+GGG + chr3_2:49291497-49291516 Msa0409000:intron 35.0%
! CGCAATTTTTGCAAACATAG+GGG + chr3_2:49291555-49291574 Msa0409000:intron 35.0%
! GCAATTTTTGCAAACATAGG+GGG + chr3_2:49291556-49291575 Msa0409000:intron 35.0%
! TTGGACCAACTTTGAGAAAA+TGG + chr3_2:49291647-49291666 Msa0409000:intron 35.0%
! GCATTTGACACACTATGTTT+TGG - chr3_2:49291818-49291837 None:intergenic 35.0%
!! TATTTTTGTCACCCCTAGTT+CGG - chr3_2:49291903-49291922 None:intergenic 35.0%
AAGTATCTGTGGGTATTCAT+GGG - chr3_2:49292102-49292121 None:intergenic 35.0%
ATCATATTTATCCAACGAGG+CGG + chr3_2:49292181-49292200 Msa0409000:intron 35.0%
GGAATGATTATGAAGCTCTT+TGG - chr3_2:49292337-49292356 None:intergenic 35.0%
! AAGAAAATTGGTCTCTGGAA+AGG + chr3_2:49292561-49292580 Msa0409000:intron 35.0%
! TACTTCCAAGTTCTGTGTTT+TGG + chr3_2:49292629-49292648 Msa0409000:intron 35.0%
TGTGAAAATGAAATGCTGCT+GGG + chr3_2:49292697-49292716 Msa0409000:intron 35.0%
!!! ATGCTGCTGGGTTTTAAAAA+AGG + chr3_2:49292709-49292728 Msa0409000:intron 35.0%
GCTGAAGTCTAGTAAATGTT+TGG + chr3_2:49292748-49292767 Msa0409000:intron 35.0%
GCTCAAAAGAAAATATGGAG+AGG - chr3_2:49292832-49292851 None:intergenic 35.0%
TAGGGGCTCAAAAGAAAATA+TGG - chr3_2:49292837-49292856 None:intergenic 35.0%
AATAGTAGTATAGTTAGGGC+CGG - chr3_2:49292905-49292924 None:intergenic 35.0%
AACGAGTACACATTGTATGA+TGG - chr3_2:49293131-49293150 None:intergenic 35.0%
CCATATGCTTATAATAGCGA+CGG + chr3_2:49293211-49293230 Msa0409000:intron 35.0%
GCGTAATTGTTAGAAACTCA+GGG - chr3_2:49293397-49293416 None:intergenic 35.0%
GTGCAGAAGTTAATTATCCA+GGG - chr3_2:49293451-49293470 None:intergenic 35.0%
AATATCATCCTTTGAGTGCA+AGG - chr3_2:49293473-49293492 None:intergenic 35.0%
GAAGCATAAATCACTCAAGT+TGG - chr3_2:49293574-49293593 None:intergenic 35.0%
GTGAACTTAGCTTATTTGGT+AGG - chr3_2:49293949-49293968 None:intergenic 35.0%
!!! ATATTTTTTTTGGTGGTGGC+CGG + chr3_2:49294000-49294019 Msa0409000:intron 35.0%
CATAAAATATGCAAGTTCCG+GGG - chr3_2:49294034-49294053 None:intergenic 35.0%
GCATAAAATATGCAAGTTCC+GGG - chr3_2:49294035-49294054 None:intergenic 35.0%
ACGCCACTGATAATATATGT+AGG + chr3_2:49294212-49294231 Msa0409000:intron 35.0%
CGCCACTGATAATATATGTA+GGG + chr3_2:49294213-49294232 Msa0409000:intron 35.0%
! TTGTTATTCAGTTGGGAACA+TGG - chr3_2:49294405-49294424 None:intergenic 35.0%
TGTTCCCAACTGAATAACAA+TGG + chr3_2:49294405-49294424 Msa0409000:five_prime_UTR 35.0%
! CTTTGCCATTGTTATTCAGT+TGG - chr3_2:49294413-49294432 None:intergenic 35.0%
GCAAAGTTACCAGCTATTTA+TGG + chr3_2:49294546-49294565 Msa0409000:five_prime_UTR 35.0%
TATGGTAACCATATTGGAAC+AGG + chr3_2:49294564-49294583 Msa0409000:five_prime_UTR 35.0%
ATGGTAACCATATTGGAACA+GGG + chr3_2:49294565-49294584 Msa0409000:five_prime_UTR 35.0%
AATAGTTCCCTGTTCCAATA+TGG - chr3_2:49294575-49294594 None:intergenic 35.0%
!! GGGAACTATTTTGTTGTAGT+AGG + chr3_2:49294585-49294604 Msa0409000:five_prime_UTR 35.0%
!! TATTTTGTTGTAGTAGGGCT+TGG + chr3_2:49294591-49294610 Msa0409000:five_prime_UTR 35.0%
! ACAAGAGACAAGTTCCTTTT+AGG - chr3_2:49294621-49294640 None:intergenic 35.0%
TACCAGATATGCAAGTGATT+TGG - chr3_2:49294836-49294855 None:intergenic 35.0%
ATATGCCTAAGTTCTTGTCA+AGG - chr3_2:49295012-49295031 None:intergenic 35.0%
AATGGATCCTCCAAAATGTT+CGG + chr3_2:49296114-49296133 Msa0409000:intron 35.0%
!! GCAATTGATGGTTTCCTTTT+CGG + chr3_2:49296235-49296254 Msa0409000:CDS 35.0%
! GGATAAGGGAGTGTATTTAA+CGG - chr3_2:49296455-49296474 None:intergenic 35.0%
TCACGTAGTAATTCCTTCTA+CGG + chr3_2:49296481-49296500 Msa0409000:CDS 35.0%
GATACATGCTATGATCTTAG+AGG + chr3_2:49296697-49296716 Msa0409000:CDS 35.0%
!!! ATTAGTTTTGTCTTTGGTGG+TGG + chr3_2:49296745-49296764 Msa0409000:CDS 35.0%
CTAGAGGTTGTTTATGATGT+TGG + chr3_2:49296895-49296914 Msa0409000:CDS 35.0%
AAGATTGGGTTTCGTTCAAA+TGG + chr3_2:49296925-49296944 Msa0409000:CDS 35.0%
ATCCAAGAAATCAAGCAACA+TGG + chr3_2:49297000-49297019 Msa0409000:three_prime_UTR 35.0%
! TTCCATGTTGCTTGATTTCT+TGG - chr3_2:49297005-49297024 None:intergenic 35.0%
GGTTGTGGAAATTGAACTAT+TGG + chr3_2:49297053-49297072 Msa0409000:three_prime_UTR 35.0%
! ACTTGAATATGTGTTGTTGC+TGG + chr3_2:49297078-49297097 Msa0409000:three_prime_UTR 35.0%
!! TTCCTCCCATGTTGTTTCAT+TGG - chr3_2:49288920-49288939 None:intergenic 40.0%
TACATTGGGAGAGGGAAATA+TGG - chr3_2:49289020-49289039 None:intergenic 40.0%
CAGTTAGTGGAGTAGTTAGT+TGG - chr3_2:49289372-49289391 None:intergenic 40.0%
ACCAGGTCAAAAATGACCAT+GGG - chr3_2:49291463-49291482 None:intergenic 40.0%
CACCCAAATCACTTATGTGA+GGG + chr3_2:49290012-49290031 Msa0409000:intron 40.0%
ACCCAAATCACTTATGTGAG+GGG + chr3_2:49290013-49290032 Msa0409000:intron 40.0%
! CGCAACTTTTGCAAACATAG+GGG + chr3_2:49290043-49290062 Msa0409000:intron 40.0%
! GCAACTTTTGCAAACATAGG+GGG + chr3_2:49290044-49290063 Msa0409000:intron 40.0%
TCGCAACTTTGGCAAACATA+GGG - chr3_2:49291399-49291418 None:intergenic 40.0%
ATCGCAACTTTGGCAAACAT+AGG - chr3_2:49291400-49291419 None:intergenic 40.0%
! GTTTGCCAAAGTTGCGATTT+TGG + chr3_2:49291402-49291421 Msa0409000:intron 40.0%
ACCAGGTCAAAAATGACCAT+GGG + chr3_2:49291463-49291482 Msa0409000:intron 40.0%
! GGGATCCATTTTCTCAAAGT+TGG - chr3_2:49291655-49291674 None:intergenic 40.0%
CATGTGTTTCAATTTACCCG+CGG - chr3_2:49291933-49291952 None:intergenic 40.0%
! GAAGTATCTGTGGGTATTCA+TGG - chr3_2:49292103-49292122 None:intergenic 40.0%
TCATATTTATCCAACGAGGC+GGG + chr3_2:49292182-49292201 Msa0409000:intron 40.0%
TATCATACTATCCGTACCCA+TGG + chr3_2:49292211-49292230 Msa0409000:intron 40.0%
GTGTGAAAATGAAATGCTGC+TGG + chr3_2:49292696-49292715 Msa0409000:intron 40.0%
! TTTTGAGCCCCTACAATCAT+GGG + chr3_2:49292844-49292863 Msa0409000:intron 40.0%
AACAGCATGATGAAGAAGCA+AGG - chr3_2:49293108-49293127 None:intergenic 40.0%
CCGTCGCTATTATAAGCATA+TGG - chr3_2:49293214-49293233 None:intergenic 40.0%
GAATGCATAATATACAGGGG+CGG + chr3_2:49293338-49293357 Msa0409000:intron 40.0%
GGCGTAATTGTTAGAAACTC+AGG - chr3_2:49293398-49293417 None:intergenic 40.0%
! TTTCTCTATTTTGCACACCC+TGG + chr3_2:49293431-49293450 Msa0409000:intron 40.0%
GGTGCAGAAGTTAATTATCC+AGG - chr3_2:49293452-49293471 None:intergenic 40.0%
TTGGAGAAATTACGTCAGCT+TGG - chr3_2:49293535-49293554 None:intergenic 40.0%
TGGTCAAACAAGATGCAAGT+TGG - chr3_2:49293554-49293573 None:intergenic 40.0%
! TCTCTACGAAGGTCTCTTTT+TGG - chr3_2:49293650-49293669 None:intergenic 40.0%
AATGTTCGAGGTTCAAACTC+CGG - chr3_2:49293901-49293920 None:intergenic 40.0%
CCTCGTGAACTTAGCTTATT+TGG - chr3_2:49293953-49293972 None:intergenic 40.0%
CCAAATAAGCTAAGTTCACG+AGG + chr3_2:49293950-49293969 Msa0409000:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG + chr3_2:49294001-49294020 Msa0409000:intron 40.0%
ATATTATCAGTGGCGTATCC+AGG - chr3_2:49294208-49294227 None:intergenic 40.0%
TTAGATGTGGTACACAAGCT+TGG + chr3_2:49294378-49294397 Msa0409000:five_prime_UTR 40.0%
TAGATGTGGTACACAAGCTT+GGG + chr3_2:49294379-49294398 Msa0409000:five_prime_UTR 40.0%
! TCATCTTGCTGTGTGTAACA+AGG - chr3_2:49294696-49294715 None:intergenic 40.0%
ACTCAACTATCTTCATCCAC+AGG + chr3_2:49294777-49294796 Msa0409000:CDS 40.0%
CACCAAATCACTTGCATATC+TGG + chr3_2:49294831-49294850 Msa0409000:intron 40.0%
AATCCTTTAACCCAACCAAG+TGG + chr3_2:49295721-49295740 Msa0409000:intron 40.0%
TGTACACATGATAAAGAGGG+TGG - chr3_2:49295752-49295771 None:intergenic 40.0%
! GTTAATGCCGAACATTTTGG+AGG - chr3_2:49296124-49296143 None:intergenic 40.0%
! AGTATCCTTTGGAGAAGGAT+TGG - chr3_2:49296180-49296199 None:intergenic 40.0%
! ATGGTTTCCTTTTCGGTTGT+GGG + chr3_2:49296242-49296261 Msa0409000:CDS 40.0%
CAATACAACCAAGGTCTGTT+CGG + chr3_2:49296265-49296284 Msa0409000:CDS 40.0%
! GTTTGTTGGACGAAAGAGAT+TGG - chr3_2:49296325-49296344 None:intergenic 40.0%
TGGAGCTACCGATAATAACA+AGG + chr3_2:49296417-49296436 Msa0409000:CDS 40.0%
AGCTACCGATAATAACAAGG+TGG + chr3_2:49296420-49296439 Msa0409000:CDS 40.0%
!! GTTGGCCACCTTGTTATTAT+CGG - chr3_2:49296428-49296447 None:intergenic 40.0%
AGTGTATTTAACGGCGTTGT+TGG - chr3_2:49296446-49296465 None:intergenic 40.0%
CTACGTGAGATTGTGGATAA+GGG - chr3_2:49296469-49296488 None:intergenic 40.0%
ACTACGTGAGATTGTGGATA+AGG - chr3_2:49296470-49296489 None:intergenic 40.0%
GGAATTACTACGTGAGATTG+TGG - chr3_2:49296476-49296495 None:intergenic 40.0%
GGAGGATGATATTGAAAGCT+TGG - chr3_2:49296539-49296558 None:intergenic 40.0%
! TCATCCTCCATTTTCTCCTT+CGG + chr3_2:49296550-49296569 Msa0409000:CDS 40.0%
ACTCTGGTACTGTCATTACA+CGG + chr3_2:49296587-49296606 Msa0409000:CDS 40.0%
TCATGCATTCCGGAAAGAAA+TGG + chr3_2:49296639-49296658 Msa0409000:CDS 40.0%
GATACTTCGCCATTTCTTTC+CGG - chr3_2:49296651-49296670 None:intergenic 40.0%
ATGCTATGATCTTAGAGGGA+GGG + chr3_2:49296702-49296721 Msa0409000:CDS 40.0%
! GCAAGTTTGTTTGGCATTTG+CGG + chr3_2:49296819-49296838 Msa0409000:CDS 40.0%
TGTGCAACAAAGAACACTAG+AGG + chr3_2:49296879-49296898 Msa0409000:CDS 40.0%
GAGGTTGTTTATGATGTTGG+TGG + chr3_2:49296898-49296917 Msa0409000:CDS 40.0%
! GTTGTTTATGATGTTGGTGG+TGG + chr3_2:49296901-49296920 Msa0409000:CDS 40.0%
!! ATGTTGGTGGTGGTAAGATT+GGG + chr3_2:49296911-49296930 Msa0409000:CDS 40.0%
TGCCAATGAAACAACATGGG+AGG + chr3_2:49288915-49288934 Msa0409000:five_prime_UTR 45.0%
GAGAGCTGATGCTAACAAGA+TGG - chr3_2:49288948-49288967 None:intergenic 45.0%
TCTTCCTGCAGCTCTACAAA+AGG + chr3_2:49288979-49288998 Msa0409000:five_prime_UTR 45.0%
! TTGACCTTTTGTAGAGCTGC+AGG - chr3_2:49288986-49289005 None:intergenic 45.0%
AGGTTTGTGCGCGGTTATTA+AGG - chr3_2:49289462-49289481 None:intergenic 45.0%
! AGTCGTTTAAGGTTTGTGCG+CGG - chr3_2:49289471-49289490 None:intergenic 45.0%
CAGGTCAAAAATGACCATGG+GGG - chr3_2:49291465-49291484 None:intergenic 45.0%
CCAGGTCAAAAATGACCATG+GGG - chr3_2:49291464-49291483 None:intergenic 45.0%
GACCAGGTCAAAAATGACCA+TGG - chr3_2:49291462-49291481 None:intergenic 45.0%
GCACCCAAATCACTTATGTG+AGG + chr3_2:49290011-49290030 Msa0409000:intron 45.0%
GCCCCTCACATAAGTGATTT+GGG - chr3_2:49290017-49290036 None:intergenic 45.0%
GAGATTGGAAGAGCAACTTG+AGG - chr3_2:49290757-49290776 None:intergenic 45.0%
GCAACTTTGGCAAACATAGG+GGG - chr3_2:49291397-49291416 None:intergenic 45.0%
CGCAACTTTGGCAAACATAG+GGG - chr3_2:49291398-49291417 None:intergenic 45.0%
ACCCACATCACTTATGTGAG+GGG - chr3_2:49291428-49291447 None:intergenic 45.0%
CACCCACATCACTTATGTGA+GGG - chr3_2:49291429-49291448 None:intergenic 45.0%
GACCAGGTCAAAAATGACCA+TGG + chr3_2:49291462-49291481 Msa0409000:intron 45.0%
CCAGGTCAAAAATGACCATG+GGG + chr3_2:49291464-49291483 Msa0409000:intron 45.0%
CAGGTCAAAAATGACCATGG+GGG + chr3_2:49291465-49291484 Msa0409000:intron 45.0%
CGAAAACGAAACATAAGGGG+CGG + chr3_2:49291500-49291519 Msa0409000:intron 45.0%
GACAAAAATACCCATGACCG+CGG + chr3_2:49291913-49291932 Msa0409000:intron 45.0%
ACAAAAATACCCATGACCGC+GGG + chr3_2:49291914-49291933 Msa0409000:intron 45.0%
TTCAATTTACCCGCGGTCAT+GGG - chr3_2:49291926-49291945 None:intergenic 45.0%
TTTCAATTTACCCGCGGTCA+TGG - chr3_2:49291927-49291946 None:intergenic 45.0%
!! GCGGGTATTGAAGTATCTGT+GGG - chr3_2:49292112-49292131 None:intergenic 45.0%
CACAGATACTTCAATACCCG+CGG + chr3_2:49292111-49292130 Msa0409000:intron 45.0%
ACAGATACTTCAATACCCGC+GGG + chr3_2:49292112-49292131 Msa0409000:intron 45.0%
! CTTTTGAGCCCCTACAATCA+TGG + chr3_2:49292843-49292862 Msa0409000:intron 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG + chr3_2:49294002-49294021 Msa0409000:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr3_2:49294063-49294082 None:intergenic 45.0%
! TAGGGCTTGGTACTCCTAAA+AGG + chr3_2:49294604-49294623 Msa0409000:five_prime_UTR 45.0%
! ATACTGGTAGCGATCTCACT+TGG + chr3_2:49294646-49294665 Msa0409000:five_prime_UTR 45.0%
AGTCCACTTGGTTGGGTTAA+AGG - chr3_2:49295727-49295746 None:intergenic 45.0%
AGTGACCAATCCTTCTCCAA+AGG + chr3_2:49296172-49296191 Msa0409000:CDS 45.0%
! GCTGAAGTATCCTTTGGAGA+AGG - chr3_2:49296185-49296204 None:intergenic 45.0%
! TTCACGGCTGAAGTATCCTT+TGG - chr3_2:49296191-49296210 None:intergenic 45.0%
! GCGTTATGGTTAGTCGTTCA+CGG - chr3_2:49296207-49296226 None:intergenic 45.0%
ACGACTAACCATAACGCCAA+CGG + chr3_2:49296210-49296229 Msa0409000:CDS 45.0%
AAACCATCAATTGCGTCCGT+TGG - chr3_2:49296229-49296248 None:intergenic 45.0%
! GATGGTTTCCTTTTCGGTTG+TGG + chr3_2:49296241-49296260 Msa0409000:CDS 45.0%
TGTATTGCCCACAACCGAAA+AGG - chr3_2:49296252-49296271 None:intergenic 45.0%
AAGAGATTGGATGACGACCA+AGG - chr3_2:49296312-49296331 None:intergenic 45.0%
GTTATTGGCCACCTCACATT+TGG + chr3_2:49296397-49296416 Msa0409000:CDS 45.0%
TATCGGTAGCTCCAAATGTG+AGG - chr3_2:49296411-49296430 None:intergenic 45.0%
AACGATGTCAAGACCGTAGA+AGG - chr3_2:49296497-49296516 None:intergenic 45.0%
TTCTACGGTCTTGACATCGT+TGG + chr3_2:49296496-49296515 Msa0409000:CDS 45.0%
GACAGTACCAGAGTCAATGA+TGG - chr3_2:49296581-49296600 None:intergenic 45.0%
CATGCTATGATCTTAGAGGG+AGG + chr3_2:49296701-49296720 Msa0409000:CDS 45.0%
TCTTAGAGGGAGGGAAAATG+TGG + chr3_2:49296711-49296730 Msa0409000:CDS 45.0%
! TACTTTTCCCTGTGAGTTCG+AGG + chr3_2:49296797-49296816 Msa0409000:CDS 45.0%
AAACTTGCCTCGAACTCACA+GGG - chr3_2:49296807-49296826 None:intergenic 45.0%
! GAGTTCGAGGCAAGTTTGTT+TGG + chr3_2:49296810-49296829 Msa0409000:CDS 45.0%
!! GATGTTGGTGGTGGTAAGAT+TGG + chr3_2:49296910-49296929 Msa0409000:CDS 45.0%
TTGTTGCTGGCAATCGTTCA+TGG + chr3_2:49297091-49297110 Msa0409000:three_prime_UTR 45.0%
!! GAATTAAAAAAATAAAAAAT+AGG + chr3_2:49291354-49291373 Msa0409000:intron 5.0%
!!! TTACATTAATTTTTTTTTTT+TGG + chr3_2:49293872-49293891 Msa0409000:intron 5.0%
!!! TAATATACATATATTTTTTT+TGG + chr3_2:49293990-49294009 Msa0409000:intron 5.0%
!!! CTTTTATTTTTTTATTTTTT+TGG + chr3_2:49295105-49295124 Msa0409000:intron 5.0%
!!! TTTTATTAATAATAAAAACA+AGG - chr3_2:49295174-49295193 None:intergenic 5.0%
!!! TGTTTTTATTATTAATAAAA+TGG + chr3_2:49295174-49295193 Msa0409000:intron 5.0%
!! TTAAAATTAAATAAAATCAA+GGG + chr3_2:49295348-49295367 Msa0409000:intron 5.0%
GTAGAGCTGCAGGAAGATGA+TGG - chr3_2:49288976-49288995 None:intergenic 50.0%
CGACTAATATTGCGAGACGG+AGG + chr3_2:49289486-49289505 Msa0409000:intron 50.0%
!!! CCCCATGGTCATTTTTGACC+TGG + chr3_2:49289974-49289993 Msa0409000:intron 50.0%
! ATTTGGGTGCCATGTCAACG+TGG - chr3_2:49290001-49290020 None:intergenic 50.0%
GGCCCCTCACATAAGTGATT+TGG - chr3_2:49290018-49290037 None:intergenic 50.0%
AGGGGCCAAAATCGCAACTT+TGG - chr3_2:49290031-49290050 None:intergenic 50.0%
GCCCCTCACATAAGTGATGT+GGG + chr3_2:49291424-49291443 Msa0409000:intron 50.0%
GCACCCACATCACTTATGTG+AGG - chr3_2:49291430-49291449 None:intergenic 50.0%
!!! CCCCATGGTCATTTTTGACC+TGG - chr3_2:49289974-49289993 None:intergenic 50.0%
!! CGCGGGTATTGAAGTATCTG+TGG - chr3_2:49292113-49292132 None:intergenic 50.0%
TCAACGGGTATCCATGGGTA+CGG - chr3_2:49292225-49292244 None:intergenic 50.0%
GGATGTCAACGGGTATCCAT+GGG - chr3_2:49292230-49292249 None:intergenic 50.0%
!! ACTAGGTTTGGTTCGGCCTA+GGG - chr3_2:49292251-49292270 None:intergenic 50.0%
!! TACTAGGTTTGGTTCGGCCT+AGG - chr3_2:49292252-49292271 None:intergenic 50.0%
CCTAGTGCCCATGATTGTAG+GGG - chr3_2:49292854-49292873 None:intergenic 50.0%
GCCTAGTGCCCATGATTGTA+GGG - chr3_2:49292855-49292874 None:intergenic 50.0%
TAATATACAGGGGCGGACCT+AGG + chr3_2:49293345-49293364 Msa0409000:intron 50.0%
CTTCTGCACCTTGCACTCAA+AGG + chr3_2:49293462-49293481 Msa0409000:intron 50.0%
GTGTAACAAGGACGAGCACA+AGG - chr3_2:49294684-49294703 None:intergenic 50.0%
GGTGGATAGTCCACTTGGTT+GGG - chr3_2:49295734-49295753 None:intergenic 50.0%
AAGAGGGTGGATAGTCCACT+TGG - chr3_2:49295739-49295758 None:intergenic 50.0%
AATTGCGTCCGTTGGCGTTA+TGG - chr3_2:49296221-49296240 None:intergenic 50.0%
GGTTGTGGGCAATACAACCA+AGG + chr3_2:49296256-49296275 Msa0409000:CDS 50.0%
ACGACCAAGGCCTAATATGC+CGG - chr3_2:49296299-49296318 None:intergenic 50.0%
CCAATAACGCTGGAAGTGGA+AGG - chr3_2:49296385-49296404 None:intergenic 50.0%
CCTTCCACTTCCAGCGTTAT+TGG + chr3_2:49296382-49296401 Msa0409000:CDS 50.0%
! TCCTCCATTTTCTCCTTCGG+TGG + chr3_2:49296553-49296572 Msa0409000:CDS 50.0%
TGCATGACGAAGGCTAGCAT+AGG - chr3_2:49296626-49296645 None:intergenic 50.0%
! CTAGCCTTCGTCATGCATTC+CGG + chr3_2:49296629-49296648 Msa0409000:CDS 50.0%
CTTTCCGGAATGCATGACGA+AGG - chr3_2:49296636-49296655 None:intergenic 50.0%
! ATTTGAAACCCCGAAGCAGC+TGG - chr3_2:49296673-49296692 None:intergenic 50.0%
CAAACTTGCCTCGAACTCAC+AGG - chr3_2:49296808-49296827 None:intergenic 50.0%
! TCGTTGCAGTTTTGCCCCCA+TGG + chr3_2:49289959-49289978 Msa0409000:intron 55.0%
TGACCTGGTCCACGTTGACA+TGG + chr3_2:49289989-49290008 Msa0409000:intron 55.0%
GGCCCCTCACATAAGTGATG+TGG + chr3_2:49291423-49291442 Msa0409000:intron 55.0%
ATTATTGGGCGGGCCGAACT+AGG + chr3_2:49291887-49291906 Msa0409000:intron 55.0%
TTATTGGGCGGGCCGAACTA+GGG + chr3_2:49291888-49291907 Msa0409000:intron 55.0%
TTATCCAACGAGGCGGGAAC+AGG + chr3_2:49292188-49292207 Msa0409000:intron 55.0%
GGGATGTCAACGGGTATCCA+TGG - chr3_2:49292231-49292250 None:intergenic 55.0%
GGATACCCGTTGACATCCCT+AGG + chr3_2:49292232-49292251 Msa0409000:intron 55.0%
TTCGGCCTAGGGATGTCAAC+GGG - chr3_2:49292240-49292259 None:intergenic 55.0%
GTTCGGCCTAGGGATGTCAA+CGG - chr3_2:49292241-49292260 None:intergenic 55.0%
!! GCGGCGAAAATGAAAGCGCT+GGG + chr3_2:49292667-49292686 Msa0409000:intron 55.0%
CCCCTACAATCATGGGCACT+AGG + chr3_2:49292851-49292870 Msa0409000:intron 55.0%
GGCCTAGTGCCCATGATTGT+AGG - chr3_2:49292856-49292875 None:intergenic 55.0%
CTAGGCATAGGTCGGAGTTG+GGG - chr3_2:49292880-49292899 None:intergenic 55.0%
CCTAGGCATAGGTCGGAGTT+GGG - chr3_2:49292881-49292900 None:intergenic 55.0%
CCAACTCCGACCTATGCCTA+GGG + chr3_2:49292879-49292898 Msa0409000:intron 55.0%
GCACACTCTCACCAACACCT+AGG - chr3_2:49293365-49293384 None:intergenic 55.0%
AAGTTCCGGGGTTCAAACCC+CGG - chr3_2:49294022-49294041 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr3_2:49294068-49294087 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr3_2:49294065-49294084 Msa0409000:intron 55.0%
TATCCAGGACCCTAGGTCAG+GGG - chr3_2:49294193-49294212 None:intergenic 55.0%
GTATCCAGGACCCTAGGTCA+GGG - chr3_2:49294194-49294213 None:intergenic 55.0%
GGGTGGATAGTCCACTTGGT+TGG - chr3_2:49295735-49295754 None:intergenic 55.0%
ACGCCAACGGACGCAATTGA+TGG + chr3_2:49296223-49296242 Msa0409000:CDS 55.0%
CAGACATGCCGAACAGACCT+TGG - chr3_2:49296276-49296295 None:intergenic 55.0%
GGCATGTCTGCCGGCATATT+AGG + chr3_2:49296286-49296305 Msa0409000:CDS 55.0%
TCTGCCGGCATATTAGGCCT+TGG + chr3_2:49296292-49296311 Msa0409000:CDS 55.0%
GTGGCCAATAACGCTGGAAG+TGG - chr3_2:49296389-49296408 None:intergenic 55.0%
TGTGAGGTGGCCAATAACGC+TGG - chr3_2:49296395-49296414 None:intergenic 55.0%
CGGTAGCTCCAAATGTGAGG+TGG - chr3_2:49296408-49296427 None:intergenic 55.0%
GCCACCGAAGGAGAAAATGG+AGG - chr3_2:49296557-49296576 None:intergenic 55.0%
CGAAGGCTAGCATAGGCAGA+CGG - chr3_2:49296619-49296638 None:intergenic 55.0%
! GGCGAAGTATCCAGCTGCTT+CGG + chr3_2:49296660-49296679 Msa0409000:CDS 55.0%
! GCGAAGTATCCAGCTGCTTC+GGG + chr3_2:49296661-49296680 Msa0409000:CDS 55.0%
! CGAAGTATCCAGCTGCTTCG+GGG + chr3_2:49296662-49296681 Msa0409000:CDS 55.0%
!! CTTTGGTGGTGGTGTCACAG+TGG + chr3_2:49296756-49296775 Msa0409000:CDS 55.0%
!! ACAGTGGAGCTTGGTGCACA+CGG + chr3_2:49296772-49296791 Msa0409000:CDS 55.0%
GTGCCATGTCAACGTGGACC+AGG - chr3_2:49289995-49290014 None:intergenic 60.0%
! ATGTGGGTGCCATGTCAGCG+TGG + chr3_2:49291440-49291459 Msa0409000:intron 60.0%
TGACCTGGTCCACGCTGACA+TGG - chr3_2:49291452-49291471 None:intergenic 60.0%
!! CGTTGCAGTTTTGGCCCCCA+TGG - chr3_2:49291482-49291501 None:intergenic 60.0%
TATTGGGCGGGCCGAACTAG+GGG + chr3_2:49291889-49291908 Msa0409000:intron 60.0%
CCATTGTACGGGTAACCCGC+GGG - chr3_2:49292130-49292149 None:intergenic 60.0%
CCCATTGTACGGGTAACCCG+CGG - chr3_2:49292131-49292150 None:intergenic 60.0%
! CCGCGGGTTACCCGTACAAT+GGG + chr3_2:49292128-49292147 Msa0409000:intron 60.0%
CGCGTGGGTACCCATTGTAC+GGG - chr3_2:49292141-49292160 None:intergenic 60.0%
CCGCGTGGGTACCCATTGTA+CGG - chr3_2:49292142-49292161 None:intergenic 60.0%
CCGTACAATGGGTACCCACG+CGG + chr3_2:49292139-49292158 Msa0409000:intron 60.0%
CGTACAATGGGTACCCACGC+GGG + chr3_2:49292140-49292159 Msa0409000:intron 60.0%
AATGGGTACCCACGCGGGTA+TGG + chr3_2:49292145-49292164 Msa0409000:intron 60.0%
ATGGGTACCCACGCGGGTAT+GGG + chr3_2:49292146-49292165 Msa0409000:intron 60.0%
GATACCTGTTCCCGCCTCGT+TGG - chr3_2:49292195-49292214 None:intergenic 60.0%
! GGCGGCGAAAATGAAAGCGC+TGG + chr3_2:49292666-49292685 Msa0409000:intron 60.0%
CCCAACTCCGACCTATGCCT+AGG + chr3_2:49292878-49292897 Msa0409000:intron 60.0%
CCCTAGGCATAGGTCGGAGT+TGG - chr3_2:49292882-49292901 None:intergenic 60.0%
GTATAGTTAGGGCCGGCCCT+AGG - chr3_2:49292898-49292917 None:intergenic 60.0%
AAGTTCGCACCCCCTGACCT+AGG + chr3_2:49294180-49294199 Msa0409000:intron 60.0%
AGTTCGCACCCCCTGACCTA+GGG + chr3_2:49294181-49294200 Msa0409000:intron 60.0%
ATCCAGGACCCTAGGTCAGG+GGG - chr3_2:49294192-49294211 None:intergenic 60.0%
CGTATCCAGGACCCTAGGTC+AGG - chr3_2:49294195-49294214 None:intergenic 60.0%
AGTGGCGTATCCAGGACCCT+AGG - chr3_2:49294200-49294219 None:intergenic 60.0%
GGTCTGTTCGGCATGTCTGC+CGG + chr3_2:49296277-49296296 Msa0409000:CDS 60.0%
GGCGCCACCGAAGGAGAAAA+TGG - chr3_2:49296560-49296579 None:intergenic 60.0%
! GTCAATGATGGCGCCACCGA+AGG - chr3_2:49296569-49296588 None:intergenic 60.0%
!! GGTGGCGCCATCATTGACTC+TGG + chr3_2:49296571-49296590 Msa0409000:CDS 60.0%
AGGCTAGCATAGGCAGACGG+CGG - chr3_2:49296616-49296635 None:intergenic 60.0%
!! GGTGGTGTCACAGTGGAGCT+TGG + chr3_2:49296763-49296782 Msa0409000:CDS 60.0%
!! CAGTGGAGCTTGGTGCACAC+GGG + chr3_2:49296773-49296792 Msa0409000:CDS 60.0%
!! AGTGGAGCTTGGTGCACACG+GGG + chr3_2:49296774-49296793 Msa0409000:CDS 60.0%
GTGCCATGTCAGCGTGGACC+AGG + chr3_2:49291446-49291465 Msa0409000:intron 65.0%
! CCCGCGGGTTACCCGTACAA+TGG + chr3_2:49292127-49292146 Msa0409000:intron 65.0%
TGGGTACCCACGCGGGTATG+GGG + chr3_2:49292147-49292166 Msa0409000:intron 65.0%
TGTCTGCCCCATACCCGCGT+GGG - chr3_2:49292156-49292175 None:intergenic 65.0%
GGCATAGGTCGGAGTTGGGG+CGG - chr3_2:49292877-49292896 None:intergenic 65.0%
CTCCGACCTATGCCTAGGGC+CGG + chr3_2:49292883-49292902 Msa0409000:intron 65.0%
TTAGGGCCGGCCCTAGGCAT+AGG - chr3_2:49292892-49292911 None:intergenic 65.0%
ACAGGGGCGGACCTAGGTGT+TGG + chr3_2:49293351-49293370 Msa0409000:intron 65.0%
GTGTCTGCCCCATACCCGCG+TGG - chr3_2:49292157-49292176 None:intergenic 70.0%
GGCCGGCCCTAGGCATAGGT+CGG - chr3_2:49292888-49292907 None:intergenic 70.0%
GGTGGCCGGGGTTTGAACCC+CGG + chr3_2:49294014-49294033 Msa0409000:intron 70.0%
CACCCCCTGACCTAGGGTCC+TGG + chr3_2:49294187-49294206 Msa0409000:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 49288847 49297236 49288847 ID=Msa0409000;Name=Msa0409000
chr3_2 mRNA 49288847 49297236 49288847 ID=Msa0409000-mRNA-1;Parent=Msa0409000;Name=Msa0409000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=508|0.5|0.66|1|0|0.66|3|279|309
chr3_2 exon 49288847 49289000 49288847 ID=Msa0409000-mRNA-1:exon:9654;Parent=Msa0409000-mRNA-1
chr3_2 exon 49294358 49294798 49294358 ID=Msa0409000-mRNA-1:exon:9655;Parent=Msa0409000-mRNA-1
chr3_2 exon 49296115 49297236 49296115 ID=Msa0409000-mRNA-1:exon:9656;Parent=Msa0409000-mRNA-1
chr3_2 five_prime_UTR 49288847 49289000 49288847 ID=Msa0409000-mRNA-1:five_prime_utr;Parent=Msa0409000-mRNA-1
chr3_2 five_prime_UTR 49294358 49294711 49294358 ID=Msa0409000-mRNA-1:five_prime_utr;Parent=Msa0409000-mRNA-1
chr3_2 CDS 49294712 49294798 49294712 ID=Msa0409000-mRNA-1:cds;Parent=Msa0409000-mRNA-1
chr3_2 CDS 49296115 49296957 49296115 ID=Msa0409000-mRNA-1:cds;Parent=Msa0409000-mRNA-1
chr3_2 three_prime_UTR 49296958 49297236 49296958 ID=Msa0409000-mRNA-1:three_prime_utr;Parent=Msa0409000-mRNA-1
Gene Sequence

>Msa0409000

ATGAAATTTTTGATCCATCAAAGTCTACTTCTTATTGCAATATTTCATGTACTTCTTCAGATTGCACTCAACTATCTTCATCCACAGATGGATCCTCCAAAATGTTCGGCATTAACAAAAGCATGTGAATATGGCATGTTTTATAGTGACCAATCCTTCTCCAAAGGATACTTCAGCCGTGAACGACTAACCATAACGCCAACGGACGCAATTGATGGTTTCCTTTTCGGTTGTGGGCAATACAACCAAGGTCTGTTCGGCATGTCTGCCGGCATATTAGGCCTTGGTCGTCATCCAATCTCTTTCGTCCAACAAACCTCTAAAAAATTCAACAAAATTTTCTCTTATTGTCTTCCTTCCACTTCCAGCGTTATTGGCCACCTCACATTTGGAGCTACCGATAATAACAAGGTGGCCAACAACGCCGTTAAATACACTCCCTTATCCACAATCTCACGTAGTAATTCCTTCTACGGTCTTGACATCGTTGGCATCAGTGTTGCCAAAACCAAGCTTTCAATATCATCCTCCATTTTCTCCTTCGGTGGCGCCATCATTGACTCTGGTACTGTCATTACACGGCTGCCGCCGTCTGCCTATGCTAGCCTTCGTCATGCATTCCGGAAAGAAATGGCGAAGTATCCAGCTGCTTCGGGGTTTCAAATTTTAGATACATGCTATGATCTTAGAGGGAGGGAAAATGTGGTTGTTCCAAAGATTAGTTTTGTCTTTGGTGGTGGTGTCACAGTGGAGCTTGGTGCACACGGGGTACTTTTCCCTGTGAGTTCGAGGCAAGTTTGTTTGGCATTTGCGGCGAATAGAGATGATAGTGATATTACTATCTTTGGGAATGTGCAACAAAGAACACTAGAGGTTGTTTATGATGTTGGTGGTGGTAAGATTGGGTTTCGTTCAAATGGTTGCAAGTGA
Protein sequence

>Msa0409000

MKFLIHQSLLLIAIFHVLLQIALNYLHPQMDPPKCSALTKACEYGMFYSDQSFSKGYFSRERLTITPTDAIDGFLFGCGQYNQGLFGMSAGILGLGRHPISFVQQTSKKFNKIFSYCLPSTSSVIGHLTFGATDNNKVANNAVKYTPLSTISRSNSFYGLDIVGISVAKTKLSISSSIFSFGGAIIDSGTVITRLPPSAYASLRHAFRKEMAKYPAASGFQILDTCYDLRGRENVVVPKISFVFGGGVTVELGAHGVLFPVSSRQVCLAFAANRDDSDITIFGNVQQRTLEVVYDVGGGKIGFRSNGCK*