AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0256120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256120 MtrunA17_Chr2g0317401 97.538 325 8 0 1 325 1 325 0.0 649
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0256120 AT1G53120.1 63.804 326 103 5 6 325 4 320 7.19e-149 421
Msa0256120 AT1G53120.2 63.804 326 102 6 6 325 4 319 4.44e-147 417

Find 83 sgRNAs with CRISPR-Local

Find 416 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACTTCCTTGGCTCAATTCT+TGG 0.207293 2_2:-50695894 Msa0256120:CDS
GTTCTTTGCTCTTCTCTTCC+AGG 0.220937 2_2:+50692294 None:intergenic
TAGTGGATTGGGAAGATTAA+AGG 0.272114 2_2:-50692611 Msa0256120:intron
GTGATAGGTTCCATATGATA+TGG 0.300702 2_2:+50698753 None:intergenic
TGTGATCAAATAAGCATATA+TGG 0.320912 2_2:+50692349 None:intergenic
GGTATCTTGGTGCAAGTTAC+AGG 0.327096 2_2:+50693627 None:intergenic
CAGTTTGAACCTTGCTCTCA+TGG 0.330450 2_2:-50695918 Msa0256120:CDS
GGATCACTTGTCAGTTCATC+TGG 0.343082 2_2:+50696075 None:intergenic
TGCTCTCATGGTGACTTCCT+TGG 0.363969 2_2:-50695906 Msa0256120:CDS
GAACAGATTTCAATGTATAA+TGG 0.368359 2_2:-50692275 Msa0256120:three_prime_UTR
CCTTGTTACCCAGGGAGAAC+AGG 0.372665 2_2:-50695052 Msa0256120:intron
ATGTATTGCTCAAGGGAGTT+GGG 0.373857 2_2:-50696608 Msa0256120:CDS
AAGTGATCCAGATGTTATTT+CGG 0.379461 2_2:-50696061 Msa0256120:CDS
CTTGTATCAGTTAGTGGATT+GGG 0.386024 2_2:-50692622 Msa0256120:CDS
ATCACATTACATTGCTTATG+TGG 0.393777 2_2:-50692332 Msa0256120:three_prime_UTR
AGTTGGGGATATTATATTGC+AGG 0.396380 2_2:-50695850 Msa0256120:intron
CGAAGCTAGTTGACATGATC+AGG 0.398418 2_2:-50693404 Msa0256120:intron
TCATAATCAAGAGAAATTAA+TGG 0.400281 2_2:+50693606 None:intergenic
GAATTGTCAGGGAGAAAGTT+GGG 0.409360 2_2:-50695866 Msa0256120:CDS
AAGAGAAATTAATGGTATCT+TGG 0.414759 2_2:+50693614 None:intergenic
TCTTGCGTCAGCACTGGATA+AGG 0.420014 2_2:-50694992 Msa0256120:intron
GGAGATCTTGTATCAGTTAG+TGG 0.420203 2_2:-50692628 Msa0256120:CDS
GCTGCAACTACCACTAGCTT+TGG 0.424137 2_2:-50698716 Msa0256120:CDS
CTCTTTAGGCTGAACGGTGC+CGG 0.424686 2_2:-50696113 Msa0256120:intron
CTTGGCTCAATTCTTGGTAC+AGG 0.426476 2_2:-50695888 Msa0256120:CDS
GATGTATTGCTCAAGGGAGT+TGG 0.427872 2_2:-50696609 Msa0256120:CDS
AGGAGAGAAGATGAGAGGTA+AGG 0.433483 2_2:+50698597 None:intergenic
GAGGGGTTAGAAAATTTGTA+TGG 0.436886 2_2:+50696299 None:intergenic
GAAGTAAACACCACAAAGAA+AGG 0.438769 2_2:-50692475 Msa0256120:CDS
CTCAATGCCGAAATAACATC+TGG 0.441188 2_2:+50696054 None:intergenic
TTCTCTTCCAGGTTTGAACT+TGG 0.443257 2_2:+50692305 None:intergenic
AAAAGAATCTATGCAAGTAT+TGG 0.445890 2_2:-50696269 Msa0256120:CDS
CATGAGAGCAAGGTTCAAAC+TGG 0.449126 2_2:+50695919 None:intergenic
CCATGGCGAATATGAGTGAT+AGG 0.450189 2_2:+50698738 None:intergenic
GTAACCTGAAGAAGTGGAAA+AGG 0.453594 2_2:+50698577 None:intergenic
TGGATCCCAATTACTACAAA+AGG 0.454338 2_2:-50692667 Msa0256120:CDS
ATGGCAATGTACGTATCAAC+TGG 0.455317 2_2:-50692687 Msa0256120:CDS
TTCTTGGTACAGGAATTGTC+AGG 0.461050 2_2:-50695878 Msa0256120:CDS
ACACACATACCCATATCATA+TGG 0.465023 2_2:-50698763 Msa0256120:five_prime_UTR
CTGGATGTCCAACAGAAATC+CGG 0.476765 2_2:+50696094 None:intergenic
AGAATTTCTTGCGTCAGCAC+TGG 0.477119 2_2:-50694998 Msa0256120:CDS
GAACGGTGCCGGATTTCTGT+TGG 0.493515 2_2:-50696102 Msa0256120:CDS
TAGAGAGTAACCTGAAGAAG+TGG 0.494138 2_2:+50698571 None:intergenic
TCTTGTATCAGTTAGTGGAT+TGG 0.495279 2_2:-50692623 Msa0256120:CDS
GTTGATGCAGTAGCCAGTGC+AGG 0.500484 2_2:-50693444 Msa0256120:CDS
AAATAATTATTGACAATACA+AGG 0.502265 2_2:+50692159 None:intergenic
AATAATTATTTGAATTCCTG+TGG 0.517980 2_2:-50692147 Msa0256120:three_prime_UTR
GGAGAGAAGATGAGAGGTAA+GGG 0.518934 2_2:+50698598 None:intergenic
GCAAGAAATTCTACAAGCTC+TGG 0.522573 2_2:+50695009 None:intergenic
GGACATTTAAATAATAAAAG+AGG 0.526656 2_2:+50692370 None:intergenic
TGAAATCTTAAATCCTGCAC+TGG 0.527319 2_2:+50693431 None:intergenic
GGAATTGTCAGGGAGAAAGT+TGG 0.527589 2_2:-50695867 Msa0256120:CDS
TGATAGGTTCCATATGATAT+GGG 0.532452 2_2:+50698754 None:intergenic
CCACTAGCTTTGGAACTGCT+TGG 0.535075 2_2:-50698706 Msa0256120:CDS
CTCTTGATTATGAACCGCCA+AGG 0.539330 2_2:-50693596 Msa0256120:intron
GGGCCAAGATGTTACCTTGG+CGG 0.539528 2_2:+50693582 None:intergenic
CAGATGTTATTTCGGCATTG+AGG 0.539649 2_2:-50696053 Msa0256120:intron
TGGAATACCAAGTTCAAACC+TGG 0.561544 2_2:-50692312 Msa0256120:three_prime_UTR
AGAGGTTGTTAGCATTGTTG+CGG 0.563507 2_2:+50698633 None:intergenic
AGAAGTTGATGTATTGCTCA+AGG 0.564298 2_2:-50696616 Msa0256120:CDS
CTTGTTACCCAGGGAGAACA+GGG 0.565414 2_2:-50695051 Msa0256120:intron
GCTAGTGGTAGTTGCAGCCA+TGG 0.567257 2_2:+50698721 None:intergenic
AAGATCTCCACTCTTGATTG+TGG 0.570795 2_2:+50692642 None:intergenic
GACATTAAAGCATTAGCTCA+AGG 0.584149 2_2:-50696235 Msa0256120:CDS
GGAAAAGGAGAGAAGATGAG+AGG 0.603841 2_2:+50698592 None:intergenic
TATATGCTCTTTAGGCTGAA+CGG 0.610234 2_2:-50696119 Msa0256120:intron
TGTATTGCTCAAGGGAGTTG+GGG 0.611297 2_2:-50696607 Msa0256120:CDS
AGGAAGTCACCATGAGAGCA+AGG 0.611523 2_2:+50695909 None:intergenic
AGCTCAAGGAGGTTATCCAC+AGG 0.615414 2_2:-50696221 Msa0256120:intron
AAAGAAAGGAAAATTTGCAG+TGG 0.618269 2_2:-50692461 Msa0256120:CDS
TAAGGGTCCTTTGAAAAGAG+AGG 0.622157 2_2:+50698615 None:intergenic
GAAGTTGATGTATTGCTCAA+GGG 0.624002 2_2:-50696615 Msa0256120:CDS
AAAGGAACCACAATCAAGAG+TGG 0.627963 2_2:-50692649 Msa0256120:CDS
TCTTGGTACAGGAATTGTCA+GGG 0.628354 2_2:-50695877 Msa0256120:CDS
CAAACAGAGGAAATGTCCAC+AGG 0.628886 2_2:+50692131 None:intergenic
CCTATCACTCATATTCGCCA+TGG 0.633026 2_2:-50698738 Msa0256120:exon
CCAAGCAGTTCCAAAGCTAG+TGG 0.639165 2_2:+50698706 None:intergenic
AATTGTCAGGGAGAAAGTTG+GGG 0.647375 2_2:-50695865 Msa0256120:CDS
CTGTACCAAGAATTGAGCCA+AGG 0.655995 2_2:+50695889 None:intergenic
TACACTCAAGTACAGTCCTG+TGG 0.662185 2_2:-50692209 Msa0256120:three_prime_UTR
AGTGAAGCATGTTCTTGAGA+TGG 0.664704 2_2:-50696565 Msa0256120:intron
CATTATTGAGGAACAAACAG+AGG 0.672735 2_2:+50692118 None:intergenic
ATTAAAGCATTAGCTCAAGG+AGG 0.699820 2_2:-50696232 Msa0256120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAATAGAAA+TGG + chr2_2:50692359-50692378 None:intergenic 10.0%
!!! TTCTATTTTTTTTTTTTTGT+AGG - chr2_2:50692360-50692379 Msa0256120:three_prime_UTR 10.0%
!!! CTTTTTTATAAAATAAATTG+TGG - chr2_2:50692432-50692451 Msa0256120:exon 10.0%
!! ACTGAAAATAAATTAAATAA+TGG + chr2_2:50692486-50692505 None:intergenic 10.0%
!! AAAATAAAATAATTTAATCC+AGG + chr2_2:50695588-50695607 None:intergenic 10.0%
!!! ATGTTTAATTTATTTCATTT+TGG - chr2_2:50698385-50698404 Msa0256120:intron 10.0%
!! TAGCATAAAATGATATATAA+TGG + chr2_2:50694490-50694509 None:intergenic 15.0%
!! TTATCTAAATATACTATGAA+AGG + chr2_2:50694925-50694944 None:intergenic 15.0%
!!! TGATATTTTATATACAACAA+AGG - chr2_2:50695180-50695199 Msa0256120:intron 15.0%
!! ATTTAGTAATATTTATTCAG+AGG + chr2_2:50696138-50696157 None:intergenic 15.0%
!!! ATAAAAGAACTTTTTACTAT+AGG - chr2_2:50696249-50696268 Msa0256120:CDS 15.0%
!! TTGAAATTGTGTTTATAAAT+GGG - chr2_2:50697149-50697168 Msa0256120:intron 15.0%
!! AAATAATTATTGACAATACA+AGG + chr2_2:50698738-50698757 None:intergenic 15.0%
!!! TTTTGAACAATTGAACATAA+TGG + chr2_2:50692405-50692424 None:intergenic 20.0%
!!! TTGTAGTAAAGTTTAAAACT+TGG - chr2_2:50692585-50692604 Msa0256120:intron 20.0%
!! AGTTTCACATTGTTTATTAT+TGG - chr2_2:50693764-50693783 Msa0256120:intron 20.0%
!! TATCTAAATCAAAAACCTTA+AGG + chr2_2:50693839-50693858 None:intergenic 20.0%
!!! TTAAGGTTTTTGATTTAGAT+AGG - chr2_2:50693838-50693857 Msa0256120:intron 20.0%
!!! TAAGGTTTTTGATTTAGATA+GGG - chr2_2:50693839-50693858 Msa0256120:intron 20.0%
!!! TCTTAGCTAAATCATTATTT+TGG - chr2_2:50694168-50694187 Msa0256120:intron 20.0%
!! ACATAATATATATGCTCTTT+AGG - chr2_2:50694767-50694786 Msa0256120:intron 20.0%
!!! TTTTAGGTAAAAGTAGTAAA+TGG + chr2_2:50695086-50695105 None:intergenic 20.0%
!! CTCAAAAAATGTTTATAAGT+GGG - chr2_2:50695447-50695466 Msa0256120:intron 20.0%
!! TGGTCAAATAAAACATATAA+TGG + chr2_2:50695614-50695633 None:intergenic 20.0%
!!! TATGTTTTATTTGACCATTT+TGG - chr2_2:50695617-50695636 Msa0256120:intron 20.0%
!! TCTCTATATCTTTCTTAATT+GGG + chr2_2:50695696-50695715 None:intergenic 20.0%
!! ATCTCTATATCTTTCTTAAT+TGG + chr2_2:50695697-50695716 None:intergenic 20.0%
!! AAAGTTATACAAAATACGAA+GGG + chr2_2:50695812-50695831 None:intergenic 20.0%
!! GATACGTAAATTTATTAAGA+AGG + chr2_2:50695961-50695980 None:intergenic 20.0%
!! AATTTACGTATCAAAACAAA+AGG - chr2_2:50695969-50695988 Msa0256120:intron 20.0%
!!! TAGGAATACAATCTTTTTAT+TGG - chr2_2:50696492-50696511 Msa0256120:intron 20.0%
!! TAGACTAATGTTAGTATATT+AGG - chr2_2:50696516-50696535 Msa0256120:intron 20.0%
!! TTTATAATTGTGTTCCTAAA+GGG + chr2_2:50696622-50696641 None:intergenic 20.0%
!!! TTTTATAATTGTGTTCCTAA+AGG + chr2_2:50696623-50696642 None:intergenic 20.0%
!! TATTGATCAAATCATTGAAA+AGG - chr2_2:50696942-50696961 Msa0256120:intron 20.0%
!! CTTGAAATTGTGTTTATAAA+TGG - chr2_2:50697148-50697167 Msa0256120:intron 20.0%
!! TCATAATCAAGAGAAATTAA+TGG + chr2_2:50697291-50697310 None:intergenic 20.0%
!! CATCATATATACACAAATTA+GGG + chr2_2:50697524-50697543 None:intergenic 20.0%
!! ACATCATATATACACAAATT+AGG + chr2_2:50697525-50697544 None:intergenic 20.0%
!! ACATAACATAAGTCAATATA+TGG - chr2_2:50697675-50697694 Msa0256120:intron 20.0%
!! CATTAAATTTATGCTCTATT+TGG + chr2_2:50697939-50697958 None:intergenic 20.0%
!! GGACATTTAAATAATAAAAG+AGG + chr2_2:50698527-50698546 None:intergenic 20.0%
!! AATAATTATTTGAATTCCTG+TGG - chr2_2:50698747-50698766 Msa0256120:five_prime_UTR 20.0%
!!! TTTTGTAGGTTGATTCTATT+TGG - chr2_2:50692374-50692393 Msa0256120:three_prime_UTR 25.0%
! TGATGAATATATTGCTGAAT+TGG - chr2_2:50692544-50692563 Msa0256120:intron 25.0%
! CTTATAGATAAGCACTTATA+TGG + chr2_2:50692798-50692817 None:intergenic 25.0%
!!! TTTTGATTTTAGGGTTTGTT+TGG + chr2_2:50692994-50693013 None:intergenic 25.0%
!!! AGCACTTCATTTTGATTTTA+GGG + chr2_2:50693003-50693022 None:intergenic 25.0%
!!! AAGCACTTCATTTTGATTTT+AGG + chr2_2:50693004-50693023 None:intergenic 25.0%
! TTCAAACTTAAGTTTCTACT+TGG + chr2_2:50693075-50693094 None:intergenic 25.0%
!! TTCACTTTCCTAAAGTATTA+TGG - chr2_2:50693212-50693231 Msa0256120:intron 25.0%
! TTATATGGAATGAGAATCAA+TGG - chr2_2:50693351-50693370 Msa0256120:intron 25.0%
! TAGTAAGAAAATGGTTAAGA+TGG - chr2_2:50693573-50693592 Msa0256120:intron 25.0%
! AGTAAGAAAATGGTTAAGAT+GGG - chr2_2:50693574-50693593 Msa0256120:intron 25.0%
! ACATTGTTTATTATTGGACA+AGG - chr2_2:50693770-50693789 Msa0256120:intron 25.0%
! TGATTTATCCTTTGATCATT+TGG - chr2_2:50694056-50694075 Msa0256120:intron 25.0%
! AAGCATTAAAAATGTGAAAC+TGG + chr2_2:50694209-50694228 None:intergenic 25.0%
! ATGAAATTTGTATGGATCAA+GGG + chr2_2:50694373-50694392 None:intergenic 25.0%
! AATGAAATTTGTATGGATCA+AGG + chr2_2:50694374-50694393 None:intergenic 25.0%
!! AGTCTAGAATGAAATTTGTA+TGG + chr2_2:50694381-50694400 None:intergenic 25.0%
! AATGATATATAATGGCTCAA+AGG + chr2_2:50694482-50694501 None:intergenic 25.0%
! AAAAGAATCTATGCAAGTAT+TGG - chr2_2:50694625-50694644 Msa0256120:intron 25.0%
!!! CCACTTATAAACATTTTTTG+AGG + chr2_2:50695449-50695468 None:intergenic 25.0%
! CCTCAAAAAATGTTTATAAG+TGG - chr2_2:50695446-50695465 Msa0256120:intron 25.0%
! CAAAGTTATACAAAATACGA+AGG + chr2_2:50695813-50695832 None:intergenic 25.0%
!!! GCAGGAATTTTTTAAAATCT+CGG - chr2_2:50696065-50696084 Msa0256120:CDS 25.0%
! TACTAAATTTCGTAGTTTGA+AGG - chr2_2:50696150-50696169 Msa0256120:intron 25.0%
!! TTTTACTATAGGATCTTAGT+AGG - chr2_2:50696260-50696279 Msa0256120:CDS 25.0%
!! GAAACGTTATTCAAGTTTAA+AGG - chr2_2:50696326-50696345 Msa0256120:CDS 25.0%
! TTAAAGGAAATTATACCGTA+TGG - chr2_2:50696342-50696361 Msa0256120:intron 25.0%
! AAACATGACAAGATAGAATT+AGG - chr2_2:50696473-50696492 Msa0256120:intron 25.0%
! TTATAATTGTGTTCCTAAAG+GGG + chr2_2:50696621-50696640 None:intergenic 25.0%
! CACAATTATAAAACGAAATG+CGG - chr2_2:50696630-50696649 Msa0256120:CDS 25.0%
!! ATCCTTTAACTTAAGTGATT+TGG - chr2_2:50696825-50696844 Msa0256120:intron 25.0%
!! TCCTTTAACTTAAGTGATTT+GGG - chr2_2:50696826-50696845 Msa0256120:intron 25.0%
! AGTAAAGAAAGTAGATCATA+TGG - chr2_2:50696878-50696897 Msa0256120:intron 25.0%
! GTAAAGAAAGTAGATCATAT+GGG - chr2_2:50696879-50696898 Msa0256120:intron 25.0%
! TTCAATTGTTAAAGCCTTAA+AGG - chr2_2:50696908-50696927 Msa0256120:intron 25.0%
! ATAGTTCTTATTCACCTTTA+AGG + chr2_2:50696925-50696944 None:intergenic 25.0%
! GAAAAGGATTCAGATTTAAA+TGG - chr2_2:50696958-50696977 Msa0256120:intron 25.0%
! AGAAAAAAAAACTTTCCATC+AGG + chr2_2:50697048-50697067 None:intergenic 25.0%
!!! TTTTTTTCTTTTTCTGTGTG+CGG - chr2_2:50697059-50697078 Msa0256120:intron 25.0%
! AAGTCATATCACATATAATG+TGG + chr2_2:50697131-50697150 None:intergenic 25.0%
! AAGAGAAATTAATGGTATCT+TGG + chr2_2:50697283-50697302 None:intergenic 25.0%
!!! TTGAATTCTTGATTTGCTTA+TGG - chr2_2:50697558-50697577 Msa0256120:intron 25.0%
! AAGTTATAAAACTTATGAGC+TGG + chr2_2:50697808-50697827 None:intergenic 25.0%
! AAATAAGTGCAAGAAAATCA+AGG + chr2_2:50698011-50698030 None:intergenic 25.0%
!! CTCTTTTGCATGAAATATTT+TGG - chr2_2:50698136-50698155 Msa0256120:intron 25.0%
! ACTTGTAAAAGCTTAAAAGA+AGG - chr2_2:50698308-50698327 Msa0256120:intron 25.0%
! TACTCAAAACAAAAAGAAAG+TGG + chr2_2:50698365-50698384 None:intergenic 25.0%
! TGTGATCAAATAAGCATATA+TGG + chr2_2:50698548-50698567 None:intergenic 25.0%
! GAACAGATTTCAATGTATAA+TGG - chr2_2:50698619-50698638 Msa0256120:CDS 25.0%
TGATAGGTTCCATATGATAT+GGG + chr2_2:50692143-50692162 None:intergenic 30.0%
ATATTCATCATCACCATGTT+GGG + chr2_2:50692534-50692553 None:intergenic 30.0%
TATATTCATCATCACCATGT+TGG + chr2_2:50692535-50692554 None:intergenic 30.0%
CTACAATTTATGAAACCCTT+TGG + chr2_2:50692571-50692590 None:intergenic 30.0%
GGTCATGAACATATCATAAA+CGG - chr2_2:50692901-50692920 Msa0256120:intron 30.0%
AACTTAAGTTTCTACTTGGA+TGG + chr2_2:50693071-50693090 None:intergenic 30.0%
TGTGTTATATTACAGTCAGT+GGG + chr2_2:50693104-50693123 None:intergenic 30.0%
TTGTGTTATATTACAGTCAG+TGG + chr2_2:50693105-50693124 None:intergenic 30.0%
GAATGAATGTAATCACAAGT+CGG + chr2_2:50693195-50693214 None:intergenic 30.0%
AGTAGACACCATAATACTTT+AGG + chr2_2:50693223-50693242 None:intergenic 30.0%
AAAGAAATCATGATTGTGAG+CGG - chr2_2:50693397-50693416 Msa0256120:intron 30.0%
! TTGAAAGTATGTCTGATAGT+TGG - chr2_2:50693532-50693551 Msa0256120:intron 30.0%
ACAACGAAACTAATACCTTA+AGG - chr2_2:50693821-50693840 Msa0256120:intron 30.0%
TGTAATGAAGAACTTACCAA+GGG + chr2_2:50693887-50693906 None:intergenic 30.0%
ATGTAATGAAGAACTTACCA+AGG + chr2_2:50693888-50693907 None:intergenic 30.0%
ATAATAACTCTTGACGATAC+AGG + chr2_2:50693922-50693941 None:intergenic 30.0%
GTATCGTCAAGAGTTATTAT+TGG - chr2_2:50693922-50693941 Msa0256120:intron 30.0%
TCAGTAGTAATGTTTATGAC+TGG - chr2_2:50693976-50693995 Msa0256120:intron 30.0%
ATCAAAATTGCTCAGTAGTT+GGG + chr2_2:50694037-50694056 None:intergenic 30.0%
CATGTAGAAAAAAAAGTTCC+AGG + chr2_2:50694412-50694431 None:intergenic 30.0%
!!! CTGGAACTTTTTTTTCTACA+TGG - chr2_2:50694410-50694429 Msa0256120:intron 30.0%
TCAACATTTGATGTATGGTT+CGG - chr2_2:50694456-50694475 Msa0256120:intron 30.0%
!! GCAAGTATTGGAAAAATTAG+CGG - chr2_2:50694637-50694656 Msa0256120:intron 30.0%
ACTTTACTGTATCAAGGTAA+TGG + chr2_2:50694723-50694742 None:intergenic 30.0%
! AAGTGATCCAGATGTTATTT+CGG - chr2_2:50694833-50694852 Msa0256120:intron 30.0%
GCATCAACAATTTCTGTATT+GGG + chr2_2:50694893-50694912 None:intergenic 30.0%
AGCATCAACAATTTCTGTAT+TGG + chr2_2:50694894-50694913 None:intergenic 30.0%
!! ATATACTATGAAAGGCATCT+AGG + chr2_2:50694917-50694936 None:intergenic 30.0%
! ATTACTCTTTTCAGCATTAC+AGG - chr2_2:50694946-50694965 Msa0256120:intron 30.0%
! TTACTCTTTTCAGCATTACA+GGG - chr2_2:50694947-50694966 Msa0256120:intron 30.0%
! GGATCTTTTACTATATACAC+AGG + chr2_2:50695268-50695287 None:intergenic 30.0%
CAAAGTTAAATCATTGTGAC+TGG - chr2_2:50695395-50695414 Msa0256120:intron 30.0%
AGATATAGAGATTAATGAGC+TGG - chr2_2:50695705-50695724 Msa0256120:intron 30.0%
TATCACACTTTAAGTACCTT+GGG - chr2_2:50696203-50696222 Msa0256120:intron 30.0%
TATAATTGTGTTCCTAAAGG+GGG + chr2_2:50696620-50696639 None:intergenic 30.0%
! ACATGTTCTATCATCTTTTC+TGG + chr2_2:50696667-50696686 None:intergenic 30.0%
TCCCAAATCACTTAAGTTAA+AGG + chr2_2:50696830-50696849 None:intergenic 30.0%
! TTAAGTGATTTGGGAAAATG+TGG - chr2_2:50696835-50696854 Msa0256120:intron 30.0%
CTTAAGATTTGAATTGAGTG+TGG + chr2_2:50697196-50697215 None:intergenic 30.0%
TGCATTCTTCTTATTCATTC+AGG - chr2_2:50697233-50697252 Msa0256120:intron 30.0%
TTTATGTCAACTTCAAACCA+GGG + chr2_2:50697335-50697354 None:intergenic 30.0%
! TTTTATGTCAACTTCAAACC+AGG + chr2_2:50697336-50697355 None:intergenic 30.0%
TTGTGTATATATGATGTCTG+TGG - chr2_2:50697528-50697547 Msa0256120:intron 30.0%
ATTCAGAAAACAAGTTCTCA+AGG + chr2_2:50697599-50697618 None:intergenic 30.0%
CATAAGTCAATATATGGATG+AGG - chr2_2:50697681-50697700 Msa0256120:intron 30.0%
TATAAGCTGAAAACAGCTTA+TGG + chr2_2:50697755-50697774 None:intergenic 30.0%
! TTGTTACCCTTTGGTTATTT+TGG - chr2_2:50698072-50698091 Msa0256120:intron 30.0%
CATATGCCAAAATAACCAAA+GGG + chr2_2:50698081-50698100 None:intergenic 30.0%
TCATATGCCAAAATAACCAA+AGG + chr2_2:50698082-50698101 None:intergenic 30.0%
! TGGTTCCTTTTGTAGTAATT+GGG + chr2_2:50698235-50698254 None:intergenic 30.0%
!! TATTTCATTTTGGTCCAGAT+AGG - chr2_2:50698395-50698414 Msa0256120:intron 30.0%
! TGCAAATTTTCCTTTCTTTG+TGG + chr2_2:50698432-50698451 None:intergenic 30.0%
AAAGAAAGGAAAATTTGCAG+TGG - chr2_2:50698433-50698452 Msa0256120:intron 30.0%
ATCACATTACATTGCTTATG+TGG - chr2_2:50698562-50698581 Msa0256120:intron 30.0%
TGAAATGCAAAAATATCCAC+AGG + chr2_2:50698704-50698723 None:intergenic 30.0%
!! TGTGGATATTTTTGCATTTC+AGG - chr2_2:50698703-50698722 Msa0256120:CDS 30.0%
GTGATAGGTTCCATATGATA+TGG + chr2_2:50692144-50692163 None:intergenic 35.0%
! CTAACAACCTCTCTTTTCAA+AGG - chr2_2:50692272-50692291 Msa0256120:three_prime_UTR 35.0%
ATATTGCTGAATTGGACCAA+AGG - chr2_2:50692552-50692571 Msa0256120:intron 35.0%
TATTGCTGAATTGGACCAAA+GGG - chr2_2:50692553-50692572 Msa0256120:intron 35.0%
TACATGTGAAGCAATAGTGA+AGG - chr2_2:50692641-50692660 Msa0256120:CDS 35.0%
ACATGTGAAGCAATAGTGAA+GGG - chr2_2:50692642-50692661 Msa0256120:CDS 35.0%
TTTCACTTAGCTATCTGAGA+AGG - chr2_2:50692855-50692874 Msa0256120:intron 35.0%
! TAGCTATCTGAGAAGGTATA+TGG - chr2_2:50692862-50692881 Msa0256120:intron 35.0%
TTATATTACAGTCAGTGGGA+TGG + chr2_2:50693100-50693119 None:intergenic 35.0%
! CTTCAGACTGAAAGTGTATT+TGG - chr2_2:50693149-50693168 Msa0256120:intron 35.0%
ACAGACATCAAACAATGACA+CGG + chr2_2:50693273-50693292 None:intergenic 35.0%
TCATTGTTTGATGTCTGTGT+TGG - chr2_2:50693275-50693294 Msa0256120:intron 35.0%
ATGTCATGTATTCCCTCATA+TGG + chr2_2:50693302-50693321 None:intergenic 35.0%
TATGAGGGAATACATGACAT+TGG - chr2_2:50693302-50693321 Msa0256120:intron 35.0%
ATGAGGGAATACATGACATT+GGG - chr2_2:50693303-50693322 Msa0256120:intron 35.0%
GCAAACTAAATGGTGAAAAG+AGG - chr2_2:50693489-50693508 Msa0256120:intron 35.0%
GTGAAAAGAGGTAACATGTA+TGG - chr2_2:50693501-50693520 Msa0256120:intron 35.0%
! TTTTCTTACTACTCGTCACT+TGG + chr2_2:50693564-50693583 None:intergenic 35.0%
AGTGACGAGTAGTAAGAAAA+TGG - chr2_2:50693564-50693583 Msa0256120:intron 35.0%
GTTGTCCTTTCCATTCTATA+CGG + chr2_2:50693806-50693825 None:intergenic 35.0%
CATCAAAATTGCTCAGTAGT+TGG + chr2_2:50694038-50694057 None:intergenic 35.0%
TATATCTTCTCCATCAACCA+CGG + chr2_2:50694103-50694122 None:intergenic 35.0%
!! AGAAGTTGATGTATTGCTCA+AGG - chr2_2:50694278-50694297 Msa0256120:intron 35.0%
!! GAAGTTGATGTATTGCTCAA+GGG - chr2_2:50694279-50694298 Msa0256120:intron 35.0%
CATACATCAAATGTTGACAC+TGG + chr2_2:50694453-50694472 None:intergenic 35.0%
CAGTGTCAACATTTGATGTA+TGG - chr2_2:50694451-50694470 Msa0256120:intron 35.0%
ACATCATTTGATCCCTAACT+TGG - chr2_2:50694514-50694533 Msa0256120:intron 35.0%
GAGGGGTTAGAAAATTTGTA+TGG + chr2_2:50694598-50694617 None:intergenic 35.0%
!! TAGATTCTTTTAGCACTGGA+GGG + chr2_2:50694616-50694635 None:intergenic 35.0%
!! ATAGATTCTTTTAGCACTGG+AGG + chr2_2:50694617-50694636 None:intergenic 35.0%
! TGCATAGATTCTTTTAGCAC+TGG + chr2_2:50694620-50694639 None:intergenic 35.0%
! GACATTAAAGCATTAGCTCA+AGG - chr2_2:50694659-50694678 Msa0256120:intron 35.0%
! ATTAAAGCATTAGCTCAAGG+AGG - chr2_2:50694662-50694681 Msa0256120:intron 35.0%
TATATCTAGATGGTTACCTG+TGG + chr2_2:50694692-50694711 None:intergenic 35.0%
ACAGGTAACCATCTAGATAT+AGG - chr2_2:50694691-50694710 Msa0256120:intron 35.0%
GCAAACACTTTACTGTATCA+AGG + chr2_2:50694729-50694748 None:intergenic 35.0%
TATATGCTCTTTAGGCTGAA+CGG - chr2_2:50694775-50694794 Msa0256120:intron 35.0%
! TGTATTGGGCTTGGAAATTT+TGG + chr2_2:50694879-50694898 None:intergenic 35.0%
AACAATTTCTGTATTGGGCT+TGG + chr2_2:50694888-50694907 None:intergenic 35.0%
AGTTGGGGATATTATATTGC+AGG - chr2_2:50695044-50695063 Msa0256120:intron 35.0%
GTCTTCACAAGGAATATCTA+TGG - chr2_2:50695212-50695231 Msa0256120:intron 35.0%
GGCTGTTTAATCAACAACTA+TGG - chr2_2:50695233-50695252 Msa0256120:intron 35.0%
GATATGCACAACTTTAGACA+GGG + chr2_2:50695289-50695308 None:intergenic 35.0%
AGATATGCACAACTTTAGAC+AGG + chr2_2:50695290-50695309 None:intergenic 35.0%
!!! TGGTTTTGTTGGGTTAAGTT+AGG - chr2_2:50695492-50695511 Msa0256120:intron 35.0%
!!! GGTTTTGTTGGGTTAAGTTA+GGG - chr2_2:50695493-50695512 Msa0256120:intron 35.0%
!! TTAAGTTGAGGCTAAACCAA+TGG + chr2_2:50695550-50695569 None:intergenic 35.0%
TAGCCTCAACTTAAAGTTTC+TGG - chr2_2:50695556-50695575 Msa0256120:intron 35.0%
!! TGTCCAGAAACTTTAAGTTG+AGG + chr2_2:50695562-50695581 None:intergenic 35.0%
ATTTGGAAAGACAGCCAAAA+TGG + chr2_2:50695634-50695653 None:intergenic 35.0%
AGAAGGTAGTCTGTAAAATG+AGG + chr2_2:50695944-50695963 None:intergenic 35.0%
AGGAAATGATTGTGTAATCG+TGG - chr2_2:50695989-50696008 Msa0256120:intron 35.0%
CGTAGTTTGAAGGTGAAAAT+TGG - chr2_2:50696160-50696179 Msa0256120:intron 35.0%
GTATCACACTTTAAGTACCT+TGG - chr2_2:50696202-50696221 Msa0256120:intron 35.0%
!! TACTTTTTATGACAGACCCA+AGG + chr2_2:50696222-50696241 None:intergenic 35.0%
TGGGTCTGTCATAAAAAGTA+CGG - chr2_2:50696222-50696241 Msa0256120:CDS 35.0%
ACTATAGGATCTTAGTAGGA+TGG - chr2_2:50696264-50696283 Msa0256120:CDS 35.0%
TCTTAGTAGGATGGATAAAC+TGG - chr2_2:50696273-50696292 Msa0256120:CDS 35.0%
! TGTGTATTTTTCCTTCACCA+AGG - chr2_2:50696541-50696560 Msa0256120:intron 35.0%
! TTTTTCCTTCACCAAGGTTT+TGG - chr2_2:50696547-50696566 Msa0256120:intron 35.0%
GAGTTAAATGACCAAAACCT+TGG + chr2_2:50696561-50696580 None:intergenic 35.0%
AGAACATGTCTTAGATAGTC+TGG - chr2_2:50696678-50696697 Msa0256120:intron 35.0%
TTATGATGTGTCAGTGAAAG+TGG - chr2_2:50696723-50696742 Msa0256120:intron 35.0%
GAATTCATTAGAGAAAGACG+TGG - chr2_2:50696774-50696793 Msa0256120:intron 35.0%
AAGAAAGTAGATCATATGGG+AGG - chr2_2:50696882-50696901 Msa0256120:intron 35.0%
ATATAGCAAACTTCACCTGA+TGG - chr2_2:50697030-50697049 Msa0256120:intron 35.0%
TGAAATCTTAAATCCTGCAC+TGG + chr2_2:50697466-50697485 None:intergenic 35.0%
ATGGATGAGGCTATTTGAAT+TGG - chr2_2:50697694-50697713 Msa0256120:intron 35.0%
CTTATATTCATAAGCTCTCC+AGG - chr2_2:50697769-50697788 Msa0256120:intron 35.0%
TAAGTGCAAGAAAATCAAGG+AGG + chr2_2:50698008-50698027 None:intergenic 35.0%
AGCATAGAATTGTTACCCTT+TGG - chr2_2:50698063-50698082 Msa0256120:intron 35.0%
ACATATTGTGCTCATAGCAA+TGG - chr2_2:50698188-50698207 Msa0256120:intron 35.0%
TGGATCCCAATTACTACAAA+AGG - chr2_2:50698227-50698246 Msa0256120:intron 35.0%
! GTGGTTCCTTTTGTAGTAAT+TGG + chr2_2:50698236-50698255 None:intergenic 35.0%
! TCTTGTATCAGTTAGTGGAT+TGG - chr2_2:50698271-50698290 Msa0256120:intron 35.0%
!! CTTGTATCAGTTAGTGGATT+GGG - chr2_2:50698272-50698291 Msa0256120:intron 35.0%
!! TAGTGGATTGGGAAGATTAA+AGG - chr2_2:50698283-50698302 Msa0256120:intron 35.0%
GAAGTAAACACCACAAAGAA+AGG - chr2_2:50698419-50698438 Msa0256120:intron 35.0%
AGAGGTTGTTAGCATTGTTG+CGG + chr2_2:50692264-50692283 None:intergenic 40.0%
! TAAGGGTCCTTTGAAAAGAG+AGG + chr2_2:50692282-50692301 None:intergenic 40.0%
GTAACCTGAAGAAGTGGAAA+AGG + chr2_2:50692320-50692339 None:intergenic 40.0%
TAGAGAGTAACCTGAAGAAG+TGG + chr2_2:50692326-50692345 None:intergenic 40.0%
TGTATTTCTCCAACCCAACA+TGG - chr2_2:50692518-50692537 Msa0256120:intron 40.0%
CATGTGAAGCAATAGTGAAG+GGG - chr2_2:50692643-50692662 Msa0256120:CDS 40.0%
! AGCAATAGTGAAGGGGATTT+TGG - chr2_2:50692650-50692669 Msa0256120:CDS 40.0%
GAAACTTTACCCACACACTA+AGG - chr2_2:50692723-50692742 Msa0256120:intron 40.0%
TATGGAGATAAGCTGAAAGC+AGG - chr2_2:50692880-50692899 Msa0256120:intron 40.0%
CTTGTGAGACTATTTGACAC+AGG + chr2_2:50692936-50692955 None:intergenic 40.0%
TTCTACTTGGATGGAAACAC+AGG + chr2_2:50693062-50693081 None:intergenic 40.0%
ATCAAACAATGACACGGACA+CGG + chr2_2:50693267-50693286 None:intergenic 40.0%
TGAGGGAATACATGACATTG+GGG - chr2_2:50693304-50693323 Msa0256120:intron 40.0%
GAATACATGACATTGGGGTT+GGG - chr2_2:50693309-50693328 Msa0256120:intron 40.0%
AATACATGACATTGGGGTTG+GGG - chr2_2:50693310-50693329 Msa0256120:intron 40.0%
! CATGTTTTCACGGGCTTATA+TGG - chr2_2:50693336-50693355 Msa0256120:intron 40.0%
ATGATGAGTGGTAACATGTG+TGG - chr2_2:50693459-50693478 Msa0256120:CDS 40.0%
TGGAGATGTGGCAAACTAAA+TGG - chr2_2:50693479-50693498 Msa0256120:CDS 40.0%
CAGACATACTTTCAAGAGAC+TGG + chr2_2:50693527-50693546 None:intergenic 40.0%
AGTATGTCTGATAGTTGGCT+TGG - chr2_2:50693537-50693556 Msa0256120:intron 40.0%
GGTTAAGATGGGTCTTGATT+TGG - chr2_2:50693585-50693604 Msa0256120:intron 40.0%
GAAGAATGCCAAAGTATGCT+TGG - chr2_2:50693609-50693628 Msa0256120:CDS 40.0%
!! GCAGTTGAGCATTGAATACT+CGG - chr2_2:50693647-50693666 Msa0256120:intron 40.0%
!! CAGTTGAGCATTGAATACTC+GGG - chr2_2:50693648-50693667 Msa0256120:intron 40.0%
GTGTTAAAGACTTACACTCG+AGG - chr2_2:50693690-50693709 Msa0256120:intron 40.0%
ACTCGTCTGTTAGTGTTATG+TGG - chr2_2:50693728-50693747 Msa0256120:intron 40.0%
CTCGTCTGTTAGTGTTATGT+GGG - chr2_2:50693729-50693748 Msa0256120:intron 40.0%
TGAACGAAGACCGTATAGAA+TGG - chr2_2:50693793-50693812 Msa0256120:intron 40.0%
GAAGACCGTATAGAATGGAA+AGG - chr2_2:50693798-50693817 Msa0256120:intron 40.0%
!! AGAGTTATTATTGGTGCCAG+TGG - chr2_2:50693931-50693950 Msa0256120:intron 40.0%
AATTGCTCAGTAGTTGGGAA+GGG + chr2_2:50694032-50694051 None:intergenic 40.0%
AAATTGCTCAGTAGTTGGGA+AGG + chr2_2:50694033-50694052 None:intergenic 40.0%
AACGTCGACCAAATGATCAA+AGG + chr2_2:50694067-50694086 None:intergenic 40.0%
ATGTATTGCTCAAGGGAGTT+GGG - chr2_2:50694286-50694305 Msa0256120:intron 40.0%
AGTGAAGCATGTTCTTGAGA+TGG - chr2_2:50694329-50694348 Msa0256120:intron 40.0%
AATGGACGACAACCAAGTTA+GGG + chr2_2:50694529-50694548 None:intergenic 40.0%
AAATGGACGACAACCAAGTT+AGG + chr2_2:50694530-50694549 None:intergenic 40.0%
TAGCCTACAACGAAGTCAAA+TGG + chr2_2:50694547-50694566 None:intergenic 40.0%
!! AGATTCTTTTAGCACTGGAG+GGG + chr2_2:50694615-50694634 None:intergenic 40.0%
CTCAATGCCGAAATAACATC+TGG + chr2_2:50694843-50694862 None:intergenic 40.0%
!! CAGATGTTATTTCGGCATTG+AGG - chr2_2:50694841-50694860 Msa0256120:intron 40.0%
TTCTTGGTACAGGAATTGTC+AGG - chr2_2:50695016-50695035 Msa0256120:CDS 40.0%
TCTTGGTACAGGAATTGTCA+GGG - chr2_2:50695017-50695036 Msa0256120:CDS 40.0%
GAATTGTCAGGGAGAAAGTT+GGG - chr2_2:50695028-50695047 Msa0256120:CDS 40.0%
AATTGTCAGGGAGAAAGTTG+GGG - chr2_2:50695029-50695048 Msa0256120:CDS 40.0%
GGATCAGAAAAGTCTTCACA+AGG - chr2_2:50695201-50695220 Msa0256120:intron 40.0%
ATCAACAACTATGGCTGTCT+TGG - chr2_2:50695242-50695261 Msa0256120:intron 40.0%
AAAACCAGCTTGTAAGGTGA+GGG + chr2_2:50695479-50695498 None:intergenic 40.0%
!!! ACCTTACAAGCTGGTTTTGT+TGG - chr2_2:50695481-50695500 Msa0256120:intron 40.0%
!!! CCTTACAAGCTGGTTTTGTT+GGG - chr2_2:50695482-50695501 Msa0256120:intron 40.0%
CAACTATGTTGACGATCCAT+TGG - chr2_2:50695531-50695550 Msa0256120:intron 40.0%
! TAAAGTTTCTGGACATGACC+TGG - chr2_2:50695567-50695586 Msa0256120:intron 40.0%
ACTTTGTTACCTTGTTACCC+AGG - chr2_2:50695833-50695852 Msa0256120:intron 40.0%
CTTTGTTACCTTGTTACCCA+GGG - chr2_2:50695834-50695853 Msa0256120:intron 40.0%
GCAAGAAATTCTACAAGCTC+TGG + chr2_2:50695888-50695907 None:intergenic 40.0%
AATGTCGTCTCCAAATTTCG+AGG - chr2_2:50696040-50696059 Msa0256120:intron 40.0%
ATGTCGTCTCCAAATTTCGA+GGG - chr2_2:50696041-50696060 Msa0256120:intron 40.0%
! GGGTCTGTCATAAAAAGTAC+GGG - chr2_2:50696223-50696242 Msa0256120:CDS 40.0%
TAGTAGGATGGATAAACTGG+AGG - chr2_2:50696276-50696295 Msa0256120:CDS 40.0%
! TTGCAAGTCTTATGGCCATA+CGG + chr2_2:50696360-50696379 None:intergenic 40.0%
ATGCAGCATTGCAAGTCTTA+TGG + chr2_2:50696368-50696387 None:intergenic 40.0%
AAAGAAAACCCTGTGTCATG+AGG - chr2_2:50696422-50696441 Msa0256120:intron 40.0%
TGAGGATGAGACTGTTAAGA+TGG - chr2_2:50696440-50696459 Msa0256120:intron 40.0%
AGACTGTTAAGATGGATGAG+TGG - chr2_2:50696448-50696467 Msa0256120:intron 40.0%
AATGACCAAAACCTTGGTGA+AGG + chr2_2:50696555-50696574 None:intergenic 40.0%
ACATTAGAGCTAAGGGTTGA+AGG + chr2_2:50696583-50696602 None:intergenic 40.0%
GCTCAACACATTAGAGCTAA+GGG + chr2_2:50696590-50696609 None:intergenic 40.0%
AGCTCAACACATTAGAGCTA+AGG + chr2_2:50696591-50696610 None:intergenic 40.0%
TTCATTAGAGAAAGACGTGG+TGG - chr2_2:50696777-50696796 Msa0256120:intron 40.0%
TGCTTATGGTTGTAGTACAC+TGG - chr2_2:50697572-50697591 Msa0256120:intron 40.0%
!!! GCAGGAACAGATTTTGGAAT+AGG + chr2_2:50697622-50697641 None:intergenic 40.0%
! CACTATGCAGGAACAGATTT+TGG + chr2_2:50697628-50697647 None:intergenic 40.0%
CAAGCATCATTTCACTATGC+AGG + chr2_2:50697640-50697659 None:intergenic 40.0%
CTGCATAGTGAAATGATGCT+TGG - chr2_2:50697638-50697657 Msa0256120:intron 40.0%
ATGGCAATGTACGTATCAAC+TGG - chr2_2:50698207-50698226 Msa0256120:intron 40.0%
AAAGGAACCACAATCAAGAG+TGG - chr2_2:50698245-50698264 Msa0256120:intron 40.0%
AAGATCTCCACTCTTGATTG+TGG + chr2_2:50698255-50698274 None:intergenic 40.0%
GGAGATCTTGTATCAGTTAG+TGG - chr2_2:50698266-50698285 Msa0256120:intron 40.0%
TGGTGTTTACTTCTCCTATC+TGG + chr2_2:50698412-50698431 None:intergenic 40.0%
TGGAATACCAAGTTCAAACC+TGG - chr2_2:50698582-50698601 Msa0256120:CDS 40.0%
TTCTCTTCCAGGTTTGAACT+TGG + chr2_2:50698592-50698611 None:intergenic 40.0%
CCATGGCGAATATGAGTGAT+AGG + chr2_2:50692159-50692178 None:intergenic 45.0%
CCTATCACTCATATTCGCCA+TGG - chr2_2:50692156-50692175 Msa0256120:three_prime_UTR 45.0%
GGAGAGAAGATGAGAGGTAA+GGG + chr2_2:50692299-50692318 None:intergenic 45.0%
AGGAGAGAAGATGAGAGGTA+AGG + chr2_2:50692300-50692319 None:intergenic 45.0%
GGAAAAGGAGAGAAGATGAG+AGG + chr2_2:50692305-50692324 None:intergenic 45.0%
! CTCTCCTTTTCCACTTCTTC+AGG - chr2_2:50692313-50692332 Msa0256120:three_prime_UTR 45.0%
TCATCATCACCATGTTGGGT+TGG + chr2_2:50692530-50692549 None:intergenic 45.0%
!! GAAGGGGATTTTGGTACTGA+AGG - chr2_2:50692659-50692678 Msa0256120:CDS 45.0%
CAAACAGAGCCTTAGTGTGT+GGG + chr2_2:50692735-50692754 None:intergenic 45.0%
TTGGATGGAAACACAGGTCA+TGG + chr2_2:50693056-50693075 None:intergenic 45.0%
!! ATTTGGTGTCCGACTTGAGT+TGG - chr2_2:50693166-50693185 Msa0256120:intron 45.0%
! TGTCTGTGTTGGTCCATATG+AGG - chr2_2:50693286-50693305 Msa0256120:intron 45.0%
! GTCTGTGTTGGTCCATATGA+GGG - chr2_2:50693287-50693306 Msa0256120:intron 45.0%
GGAATACATGACATTGGGGT+TGG - chr2_2:50693308-50693327 Msa0256120:intron 45.0%
! GTTGGGGAGACATGTTTTCA+CGG - chr2_2:50693326-50693345 Msa0256120:intron 45.0%
! TTGGGGAGACATGTTTTCAC+GGG - chr2_2:50693327-50693346 Msa0256120:intron 45.0%
GAAATCATGATTGTGAGCGG+TGG - chr2_2:50693400-50693419 Msa0256120:intron 45.0%
TGGTAACATGTGTGGAGATG+TGG - chr2_2:50693467-50693486 Msa0256120:CDS 45.0%
AATGCTCAACTGCCACTCAA+CGG + chr2_2:50693640-50693659 None:intergenic 45.0%
!! GAGCATTGAATACTCGGGAA+AGG - chr2_2:50693653-50693672 Msa0256120:intron 45.0%
! TCGGGAAAGGTTTTTGTACG+AGG - chr2_2:50693666-50693685 Msa0256120:intron 45.0%
ACACTCGAGGATGAGATTGT+TGG - chr2_2:50693703-50693722 Msa0256120:intron 45.0%
TGTTATGTGGGCGTGAATGA+AGG - chr2_2:50693741-50693760 Msa0256120:intron 45.0%
GATTTAGATAGGGTGCAGAG+TGG - chr2_2:50693849-50693868 Msa0256120:intron 45.0%
! GTGGATTAATGTGGTACCCT+TGG - chr2_2:50693868-50693887 Msa0256120:intron 45.0%
TGCTGCACATACATAACCAC+TGG + chr2_2:50693950-50693969 None:intergenic 45.0%
ATTGCTCAGTAGTTGGGAAG+GGG + chr2_2:50694031-50694050 None:intergenic 45.0%
!!! CGTTTTTTGAAGAAGCACCG+TGG - chr2_2:50694083-50694102 Msa0256120:intron 45.0%
GATGTATTGCTCAAGGGAGT+TGG - chr2_2:50694285-50694304 Msa0256120:intron 45.0%
TGTATTGCTCAAGGGAGTTG+GGG - chr2_2:50694287-50694306 Msa0256120:intron 45.0%
ATTCTAGACTGTCACAAGCC+TGG - chr2_2:50694391-50694410 Msa0256120:intron 45.0%
! CGTCCATTTGACTTCGTTGT+AGG - chr2_2:50694541-50694560 Msa0256120:intron 45.0%
!! GGAGAGCACCTATATCTAGA+TGG + chr2_2:50694702-50694721 None:intergenic 45.0%
CTGGATGTCCAACAGAAATC+CGG + chr2_2:50694803-50694822 None:intergenic 45.0%
GGATCACTTGTCAGTTCATC+TGG + chr2_2:50694822-50694841 None:intergenic 45.0%
CATGAGAGCAAGGTTCAAAC+TGG + chr2_2:50694978-50694997 None:intergenic 45.0%
CAGTTTGAACCTTGCTCTCA+TGG - chr2_2:50694976-50694995 Msa0256120:intron 45.0%
GACTTCCTTGGCTCAATTCT+TGG - chr2_2:50695000-50695019 Msa0256120:CDS 45.0%
CTGTACCAAGAATTGAGCCA+AGG + chr2_2:50695008-50695027 None:intergenic 45.0%
CTTGGCTCAATTCTTGGTAC+AGG - chr2_2:50695006-50695025 Msa0256120:CDS 45.0%
GGAATTGTCAGGGAGAAAGT+TGG - chr2_2:50695027-50695046 Msa0256120:CDS 45.0%
! TGTGCACAGAGCACAGTTTT+AGG + chr2_2:50695102-50695121 None:intergenic 45.0%
ACTGTGCTCTGTGCACAAAA+TGG - chr2_2:50695105-50695124 Msa0256120:intron 45.0%
AAACCAGCTTGTAAGGTGAG+GGG + chr2_2:50695478-50695497 None:intergenic 45.0%
CAAAACCAGCTTGTAAGGTG+AGG + chr2_2:50695480-50695499 None:intergenic 45.0%
CCCAACAAAACCAGCTTGTA+AGG + chr2_2:50695485-50695504 None:intergenic 45.0%
AGAATTTCTTGCGTCAGCAC+TGG - chr2_2:50695896-50695915 Msa0256120:CDS 45.0%
ATTCCTGCACCCTCGAAATT+TGG + chr2_2:50696053-50696072 None:intergenic 45.0%
AGTCTCATCCTCATGACACA+GGG + chr2_2:50696433-50696452 None:intergenic 45.0%
ATTGTGTTCCTAAAGGGGGT+TGG + chr2_2:50696616-50696635 None:intergenic 45.0%
! GAGTGTGGCTTGTAAAGTGA+GGG + chr2_2:50697181-50697200 None:intergenic 45.0%
! TGAGTGTGGCTTGTAAAGTG+AGG + chr2_2:50697182-50697201 None:intergenic 45.0%
! GGTATCTTGGTGCAAGTTAC+AGG + chr2_2:50697270-50697289 None:intergenic 45.0%
CTCTTGATTATGAACCGCCA+AGG - chr2_2:50697298-50697317 Msa0256120:intron 45.0%
CGAAGCTAGTTGACATGATC+AGG - chr2_2:50697490-50697509 Msa0256120:intron 45.0%
CAAGAAAATCAAGGAGGAGC+AGG + chr2_2:50698002-50698021 None:intergenic 45.0%
GAAGGCCAAGTTCATCTGAA+CGG - chr2_2:50698326-50698345 Msa0256120:intron 45.0%
CAAAGCCGTTCAGATGAACT+TGG + chr2_2:50698334-50698353 None:intergenic 45.0%
CAAGTTCATCTGAACGGCTT+TGG - chr2_2:50698332-50698351 Msa0256120:intron 45.0%
GTTCTTTGCTCTTCTCTTCC+AGG + chr2_2:50698603-50698622 None:intergenic 45.0%
TACACTCAAGTACAGTCCTG+TGG - chr2_2:50698685-50698704 Msa0256120:CDS 45.0%
!!! TTTTTTATAAAATAAATTGT+GGG - chr2_2:50692433-50692452 Msa0256120:exon 5.0%
!! TAAACAAAAAAATATATATT+TGG + chr2_2:50695651-50695670 None:intergenic 5.0%
!! ACAATTAAAAAAAAAAAAAT+TGG + chr2_2:50697389-50697408 None:intergenic 5.0%
! GCTGCAACTACCACTAGCTT+TGG - chr2_2:50692178-50692197 Msa0256120:three_prime_UTR 50.0%
CCAAGCAGTTCCAAAGCTAG+TGG + chr2_2:50692191-50692210 None:intergenic 50.0%
!! CCACTAGCTTTGGAACTGCT+TGG - chr2_2:50692188-50692207 Msa0256120:three_prime_UTR 50.0%
CCAAACAGAGCCTTAGTGTG+TGG + chr2_2:50692736-50692755 None:intergenic 50.0%
CCACACACTAAGGCTCTGTT+TGG - chr2_2:50692733-50692752 Msa0256120:intron 50.0%
AGTCGGACACCAACTCAAGT+CGG + chr2_2:50693178-50693197 None:intergenic 50.0%
ATGATTGTGAGCGGTGGTAC+TGG - chr2_2:50693406-50693425 Msa0256120:CDS 50.0%
CGGGAACACCAAGCATACTT+TGG + chr2_2:50693620-50693639 None:intergenic 50.0%
ATGCTCAACTGCCACTCAAC+GGG + chr2_2:50693639-50693658 None:intergenic 50.0%
!! GGGTGCAGAGTGGATTAATG+TGG - chr2_2:50693859-50693878 Msa0256120:intron 50.0%
CTCTTGACGATACAGGAGCA+AGG + chr2_2:50693915-50693934 None:intergenic 50.0%
!! TGAAGAAGCACCGTGGTTGA+TGG - chr2_2:50694090-50694109 Msa0256120:intron 50.0%
GCTTTCTGACGTGCAGATTC+AGG - chr2_2:50694225-50694244 Msa0256120:intron 50.0%
AGCTCAAGGAGGTTATCCAC+AGG - chr2_2:50694673-50694692 Msa0256120:intron 50.0%
AGGAAGTCACCATGAGAGCA+AGG + chr2_2:50694988-50695007 None:intergenic 50.0%
TGCTCTCATGGTGACTTCCT+TGG - chr2_2:50694988-50695007 Msa0256120:intron 50.0%
CTTGTTACCCAGGGAGAACA+GGG - chr2_2:50695843-50695862 Msa0256120:intron 50.0%
! TCTTGCGTCAGCACTGGATA+AGG - chr2_2:50695902-50695921 Msa0256120:CDS 50.0%
! TCTCCAAATTTCGAGGGTGC+AGG - chr2_2:50696047-50696066 Msa0256120:intron 50.0%
TGCTGCATGCAGCTGAATGT+TGG - chr2_2:50696380-50696399 Msa0256120:intron 50.0%
GCTGCATGCAGCTGAATGTT+GGG - chr2_2:50696381-50696400 Msa0256120:intron 50.0%
CAGTCTCATCCTCATGACAC+AGG + chr2_2:50696434-50696453 None:intergenic 50.0%
AGTCTGGACATGTGTCAGAG+AGG - chr2_2:50696694-50696713 Msa0256120:intron 50.0%
GAACCGCCAAGGTAACATCT+TGG - chr2_2:50697309-50697328 Msa0256120:intron 50.0%
! GCTGGTTTCGTAAGCTATCC+TGG + chr2_2:50697790-50697809 None:intergenic 50.0%
GCTAGTGGTAGTTGCAGCCA+TGG + chr2_2:50692176-50692195 None:intergenic 55.0%
GGTACAAGCAACCGAGCAAG+TGG - chr2_2:50693427-50693446 Msa0256120:CDS 55.0%
!! TGCTTGGTGTTCCCGTTGAG+TGG - chr2_2:50693625-50693644 Msa0256120:CDS 55.0%
CTCTTTAGGCTGAACGGTGC+CGG - chr2_2:50694781-50694800 Msa0256120:intron 55.0%
! GAACGGTGCCGGATTTCTGT+TGG - chr2_2:50694792-50694811 Msa0256120:intron 55.0%
ACACCCCTCACCTTACAAGC+TGG - chr2_2:50695472-50695491 Msa0256120:intron 55.0%
CCTGTTCTCCCTGGGTAACA+AGG + chr2_2:50695845-50695864 None:intergenic 55.0%
CCTTGTTACCCAGGGAGAAC+AGG - chr2_2:50695842-50695861 Msa0256120:intron 55.0%
TGAGCTAGCCAACCCCCTTT+AGG - chr2_2:50696605-50696624 Msa0256120:CDS 55.0%
CTGGACATGTGTCAGAGAGG+AGG - chr2_2:50696697-50696716 Msa0256120:intron 55.0%
GGGCCAAGATGTTACCTTGG+CGG + chr2_2:50697315-50697334 None:intergenic 55.0%
CCAGGGCCAAGATGTTACCT+TGG + chr2_2:50697318-50697337 None:intergenic 55.0%
CCAAGGTAACATCTTGGCCC+TGG - chr2_2:50697315-50697334 Msa0256120:intron 55.0%
GTTGATGCAGTAGCCAGTGC+AGG - chr2_2:50697450-50697469 Msa0256120:intron 55.0%
AAGCAACCGAGCAAGTGGCG+TGG - chr2_2:50693432-50693451 Msa0256120:CDS 60.0%
AGCAACCGAGCAAGTGGCGT+GGG - chr2_2:50693433-50693452 Msa0256120:CDS 60.0%
ATCAGCCCACGCCACTTGCT+CGG + chr2_2:50693441-50693460 None:intergenic 60.0%
! TGGCGTGGGCTGATGATGAG+TGG - chr2_2:50693447-50693466 Msa0256120:CDS 60.0%
CTGAGCACCCTGTTCTCCCT+GGG + chr2_2:50695853-50695872 None:intergenic 60.0%
TCTGAGCACCCTGTTCTCCC+TGG + chr2_2:50695854-50695873 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 50692132 50698784 50692132 ID=Msa0256120;Name=Msa0256120
chr2_2 mRNA 50692132 50698784 50692132 ID=Msa0256120-mRNA-1;Parent=Msa0256120;Name=Msa0256120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=43|1|1|1|1|1|10|309|325
chr2_2 exon 50692132 50692503 50692132 ID=Msa0256120-mRNA-1:exon:15301;Parent=Msa0256120-mRNA-1
chr2_2 exon 50692612 50692711 50692612 ID=Msa0256120-mRNA-1:exon:15300;Parent=Msa0256120-mRNA-1
chr2_2 exon 50693405 50693503 50693405 ID=Msa0256120-mRNA-1:exon:15299;Parent=Msa0256120-mRNA-1
chr2_2 exon 50693597 50693661 50693597 ID=Msa0256120-mRNA-1:exon:15298;Parent=Msa0256120-mRNA-1
chr2_2 exon 50694993 50695061 50694993 ID=Msa0256120-mRNA-1:exon:15297;Parent=Msa0256120-mRNA-1
chr2_2 exon 50695851 50695956 50695851 ID=Msa0256120-mRNA-1:exon:15296;Parent=Msa0256120-mRNA-1
chr2_2 exon 50696054 50696127 50696054 ID=Msa0256120-mRNA-1:exon:15295;Parent=Msa0256120-mRNA-1
chr2_2 exon 50696222 50696353 50696222 ID=Msa0256120-mRNA-1:exon:15294;Parent=Msa0256120-mRNA-1
chr2_2 exon 50696566 50696675 50696566 ID=Msa0256120-mRNA-1:exon:15293;Parent=Msa0256120-mRNA-1
chr2_2 exon 50698582 50698784 50698582 ID=Msa0256120-mRNA-1:exon:15292;Parent=Msa0256120-mRNA-1
chr2_2 five_prime_UTR 50698742 50698784 50698742 ID=Msa0256120-mRNA-1:five_prime_utr;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50698582 50698741 50698582 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50696566 50696675 50696566 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50696222 50696353 50696222 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50696054 50696127 50696054 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50695851 50695956 50695851 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50694993 50695061 50694993 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50693597 50693661 50693597 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50693405 50693503 50693405 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50692612 50692711 50692612 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 CDS 50692441 50692503 50692441 ID=Msa0256120-mRNA-1:cds;Parent=Msa0256120-mRNA-1
chr2_2 three_prime_UTR 50692132 50692440 50692132 ID=Msa0256120-mRNA-1:three_prime_utr;Parent=Msa0256120-mRNA-1
Gene Sequence

>Msa0256120

ATGGCTGCAACTACCACTAGCTTTGGAACTGCTTGGTGTCTTAGAAGAGTAACTCAAGCTTTTGCACTTTCTCATTCTCATAATCTCCGCAACAATGCTAACAACCTCTCTTTTCAAAGGACCCTTACCTCTCATCTTCTCTCCTTTTCCACTTCTTCAGATTCAGGTGCAAGCACGACAGTGCATGCTTCAAAACGAGAAGTTGATGTATTGCTCAAGGGAGTTGGGGAGAAAAGTGTAGAAAATGAAGTGAAGCATGTTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAGATTCTCCATACAAATTTTCTAACCCCTCCAGTGCTAAAAGAATCTATGCAAGTATTGGAAAAATTAGCGGACATTAAAGCATTAGCTCAAGGAGGTTATCCACAGGCTGAACGGTGCCGGATTTCTGTTGGACATCCAGATGAACTGACAAGTGATCCAGATGTTATTTCGGCATTGAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCTCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAAGTTGGGGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAGCTTGTAGAATTTCTTGCGTCAGCACTGGATAAGGTTCGTAATGTTCCTGTAACTTGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACTATAGAAGCGTCACTAAGAGTTGATGCAGTAGCCAGTGCAGGATTTAAGATTTCACGTTCGAAGCTAGTTGACATGATCAGCAATGGCAATGTACGTATCAACTGGATCCCAATTACTACAAAAGGAACCACAATCAAGAGTGGAGATCTTGTATCAGTTAGTGGATTGGGAAGATTAAAGATAGGAGAAGTAAACACCACAAAGAAAGGAAAATTTGCAGTGGAACTCATTCGATATTTGTAG

Protein sequence

>Msa0256120

MAATTTSFGTAWCLRRVTQAFALSHSHNLRNNANNLSFQRTLTSHLLSFSTSSDSGASTTVHASKREVDVLLKGVGEKSVENEVKHVLEMARRASLKREILHTNFLTPPVLKESMQVLEKLADIKALAQGGYPQAERCRISVGHPDELTSDPDVISALSITGNFQFEPCSHGDFLGSILGTGIVREKVGDIILQGEQGAQIIVVPELVEFLASALDKVRNVPVTCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGNVRINWIPITTKGTTIKSGDLVSVSGLGRLKIGEVNTTKKGKFAVELIRYL*