AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0658280


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0658280 MtrunA17_Chr8g0381171 92.806 278 16 1 13 290 1 274 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0658280 AT3G26085.4 61.826 241 85 2 57 290 29 269 1.85e-101 298
Msa0658280 AT3G26085.1 61.826 241 85 2 57 290 50 290 5.79e-101 297
Msa0658280 AT3G26085.3 61.826 241 85 2 57 290 70 310 1.03e-100 298
Msa0658280 AT3G26085.2 60.924 238 89 1 57 290 82 319 1.55e-100 297

Find 69 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCCTCTTGGATTTCT+TGG 0.137206 4_3:-68295041 None:intergenic
CGGCGCAGTTCTGCCACTTT+TGG 0.146735 4_3:+68298306 Msa0658280:CDS
CTGGTCTCATTGCTGCTTTC+GGG 0.149947 4_3:+68295203 Msa0658280:CDS
TGTTCAAAATGACAACTTAT+TGG 0.182949 4_3:+68295099 Msa0658280:CDS
TCTGGTCTCATTGCTGCTTT+CGG 0.246146 4_3:+68295202 Msa0658280:CDS
ACCTTTGTTGGTCTTGTATA+CGG 0.257492 4_3:+68298558 Msa0658280:CDS
GCGGTAGCTGCTTTAATCTT+TGG 0.265287 4_3:+68298349 Msa0658280:CDS
CATCTAAGTTACCTGTCTAT+TGG 0.300999 4_3:-68296465 None:intergenic
CCTTAGCTCTCTCCAACCTT+TGG 0.311835 4_3:+68298139 Msa0658280:CDS
TAATGTTGTTATTACCTGTT+AGG 0.313314 4_3:+68298993 Msa0658280:three_prime_UTR
TAATTTGCATGACATAGTTT+TGG 0.319065 4_3:-68298914 None:intergenic
CAAGCTTGCATACTGACTTC+TGG 0.334409 4_3:+68295184 Msa0658280:CDS
GCCATAAAAGCCCTCCTATC+AGG 0.343970 4_3:-68298641 None:intergenic
AGCTTGAAGCACAGCACTCC+TGG 0.355918 4_3:-68295167 None:intergenic
TGTTTCAGGGCAACCTTTGT+TGG 0.366022 4_3:+68298546 Msa0658280:intron
ATGCTAACCCTATTCCTTCC+AGG 0.372799 4_3:+68295149 Msa0658280:CDS
ACAGCACTCCTGGAAGGAAT+AGG 0.375154 4_3:-68295157 None:intergenic
TCTCGCACACTCTCAATTCC+TGG 0.384312 4_3:+68294598 Msa0658280:CDS
ACATTTGCAAACAGATCTCT+TGG 0.391180 4_3:-68298799 None:intergenic
GAAACTATTCCTTTGCCATC+TGG 0.393537 4_3:+68298395 Msa0658280:CDS
TGGCATCTTGAGATGATTAC+AGG 0.394200 4_3:+68296365 Msa0658280:CDS
TGTATCAGGTCCTTCCCTCT+TGG 0.395014 4_3:-68295050 None:intergenic
AACCTCCCCGTCGATGGGTT+TGG 0.409024 4_3:+68298743 Msa0658280:three_prime_UTR
AATAGAAGGATTGCCGGTCT+TGG 0.411237 4_3:+68295546 Msa0658280:CDS
TCTCATGTTGCGTCAATAGA+AGG 0.415124 4_3:+68295532 Msa0658280:CDS
TAAAGTTAACTAATCCTAAC+AGG 0.416706 4_3:-68299007 None:intergenic
TGGTGTTATATAGTATGATT+CGG 0.432403 4_3:+68298763 Msa0658280:three_prime_UTR
TGCGTCAATAGAAGGATTGC+CGG 0.432824 4_3:+68295540 Msa0658280:CDS
CAGCACTCCTGGAAGGAATA+GGG 0.442213 4_3:-68295156 None:intergenic
CATGCAGTGAACAACCTGAT+AGG 0.453687 4_3:+68298627 Msa0658280:CDS
CTCTAGCCTTGCAGTTCCCA+TGG 0.454900 4_3:+68298599 Msa0658280:CDS
TCACTAGACTCAGCAAAATC+CGG 0.479458 4_3:-68296437 None:intergenic
GCTCTTTGCTATTGAAGACT+TGG 0.480110 4_3:+68296414 Msa0658280:CDS
GAGAGATCTACAGATGTATC+AGG 0.496866 4_3:-68295064 None:intergenic
GTCCAGTTCATTCCCAAAAG+TGG 0.502847 4_3:-68298319 None:intergenic
CGGCAATATAATCCAAAGGT+TGG 0.521359 4_3:-68298151 None:intergenic
TAGTGAAGCAGCCAATAGAC+AGG 0.526883 4_3:+68296454 Msa0658280:CDS
TTATTCAACCTCCCCGTCGA+TGG 0.527644 4_3:+68298737 Msa0658280:three_prime_UTR
TATTCAACCTCCCCGTCGAT+GGG 0.537338 4_3:+68298738 Msa0658280:three_prime_UTR
GTTCACTGCATGAGAAGCCA+TGG 0.542051 4_3:-68298616 None:intergenic
GGGTTAGCATTCTCAACAAG+TGG 0.542305 4_3:-68295136 None:intergenic
TTTCGGGACAGTGATTCGCC+AGG 0.545417 4_3:+68295219 Msa0658280:CDS
TTTGCTATTGAAGACTTGGC+CGG 0.546719 4_3:+68296418 Msa0658280:CDS
TCTGTAGAGCAGTCCAAGAC+CGG 0.556859 4_3:-68295559 None:intergenic
TTATCTATTGAGATGGAAGA+TGG 0.561734 4_3:-68298699 None:intergenic
ATAACACCAAACCCATCGAC+GGG 0.561879 4_3:-68298749 None:intergenic
GCAGTGAACAACCTGATAGG+AGG 0.562292 4_3:+68298630 Msa0658280:CDS
TAGCGAGTTATCTATTGAGA+TGG 0.563810 4_3:-68298706 None:intergenic
ACTGTGAGGGAGAGTGATGA+AGG 0.564456 4_3:-68294664 None:intergenic
GCCAAGAAATCCAAGAGGGA+AGG 0.567102 4_3:+68295040 Msa0658280:CDS
TATAACACCAAACCCATCGA+CGG 0.583976 4_3:-68298750 None:intergenic
TAGTATCATTCATTCATACA+TGG 0.590058 4_3:+68294563 Msa0658280:CDS
GATAGTACTACAGCAACTCC+AGG 0.598640 4_3:-68294616 None:intergenic
CCAAAGGTTGGAGAGAGCTA+AGG 0.600412 4_3:-68298139 None:intergenic
TGAAGCACAGCACTCCTGGA+AGG 0.602584 4_3:-68295163 None:intergenic
CAGTGAACAACCTGATAGGA+GGG 0.604035 4_3:+68298631 Msa0658280:CDS
TCCGTATACAAGACCAACAA+AGG 0.604699 4_3:-68298559 None:intergenic
GTGTGATTAACTAACTGTGA+GGG 0.617765 4_3:-68294677 None:intergenic
CATGGGAACTGCAAGGCTAG+AGG 0.618400 4_3:-68298598 None:intergenic
TTCACTGCATGAGAAGCCAT+GGG 0.629050 4_3:-68298615 None:intergenic
GGACATGCACCAGATGGCAA+AGG 0.641457 4_3:-68298404 None:intergenic
AATTCCAGGCAAAACTGCAA+CGG 0.649711 4_3:-68298171 None:intergenic
GAGAAGCCATGGGAACTGCA+AGG 0.658768 4_3:-68298605 None:intergenic
AATGAACTGGACGAGTATTG+CGG 0.660794 4_3:+68298330 Msa0658280:CDS
GCAACGGCAATATAATCCAA+AGG 0.664800 4_3:-68298155 None:intergenic
AGTGTGCGAGAGATAAAGCA+TGG 0.665545 4_3:-68294586 None:intergenic
CACCAAACCCATCGACGGGG+AGG 0.673488 4_3:-68298745 None:intergenic
TAACACCAAACCCATCGACG+GGG 0.756934 4_3:-68298748 None:intergenic
AAAGTGGCAGAACTGCGCCG+CGG 0.783792 4_3:-68298303 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTAT+AGG + chr4_3:68294992-68295011 Msa0658280:intron 0.0%
!!! TTTTTTTTTTTTTTTTTATA+GGG + chr4_3:68294993-68295012 Msa0658280:intron 0.0%
!! ATAAAAATAGAAATTAAAGA+AGG - chr4_3:68294709-68294728 None:intergenic 10.0%
!!! AAATTTTAGTTATCTATTTA+TGG - chr4_3:68298944-68298963 None:intergenic 10.0%
!! AAGTTATTATCAAAAGTTTA+TGG + chr4_3:68294854-68294873 Msa0658280:intron 15.0%
!! AGTTATTATCAAAAGTTTAT+GGG + chr4_3:68294855-68294874 Msa0658280:intron 15.0%
!! AAAAAAAAATCAATTTCACT+AGG - chr4_3:68294974-68294993 None:intergenic 15.0%
!!! AATTATTATTAGAGTTTGTT+AGG - chr4_3:68296645-68296664 None:intergenic 15.0%
!!! TAGAATATTTCATGATTTTA+GGG - chr4_3:68296717-68296736 None:intergenic 15.0%
!!! TTAGAATATTTCATGATTTT+AGG - chr4_3:68296718-68296737 None:intergenic 15.0%
!! TTTGAATATTATATAGTAGA+TGG + chr4_3:68297978-68297997 Msa0658280:intron 15.0%
!! TGATGAAAAATAAATAAGAA+CGG - chr4_3:68298237-68298256 None:intergenic 15.0%
!! ATATTATTGTTTATGTTTCA+GGG + chr4_3:68298533-68298552 Msa0658280:intron 15.0%
!!! CTACATTTTATCTTAAAAAA+TGG - chr4_3:68298852-68298871 None:intergenic 15.0%
!!! CATTTTTTAAGATAAAATGT+AGG + chr4_3:68298850-68298869 Msa0658280:three_prime_UTR 15.0%
!! CAATAAACATACATTTCATT+TGG + chr4_3:68295313-68295332 Msa0658280:intron 20.0%
!!! ATGTTGTACTTTTAAGTTTA+TGG - chr4_3:68295844-68295863 None:intergenic 20.0%
!! AATTATTAAGAACATTTCAG+AGG - chr4_3:68295869-68295888 None:intergenic 20.0%
!!! TCTGAAATGTTCTTAATAAT+TGG + chr4_3:68295868-68295887 Msa0658280:intron 20.0%
!! ATGCTATGATATATTTATTG+TGG + chr4_3:68295904-68295923 Msa0658280:intron 20.0%
!! TGCTATGATATATTTATTGT+GGG + chr4_3:68295905-68295924 Msa0658280:intron 20.0%
!!! ATATTTCACTGTTGATTTTA+TGG - chr4_3:68296495-68296514 None:intergenic 20.0%
!!! ATCTATTAAGGTTAGTTATT+GGG + chr4_3:68296752-68296771 Msa0658280:intron 20.0%
!!! TCCTTTTATTTCTTATTCAT+TGG + chr4_3:68297093-68297112 Msa0658280:intron 20.0%
!! ACCAATGAATAAGAAATAAA+AGG - chr4_3:68297097-68297116 None:intergenic 20.0%
!! TAAAATACGAATGAATAGTT+TGG + chr4_3:68297808-68297827 Msa0658280:intron 20.0%
!!! AATATTTTGTTTTCCAAATC+AGG + chr4_3:68298115-68298134 Msa0658280:intron 20.0%
!!! AATCCAATTTTCAGAAATTA+GGG - chr4_3:68298428-68298447 None:intergenic 20.0%
!! AATATGATTCTAATTAGATC+AGG - chr4_3:68298518-68298537 None:intergenic 20.0%
!! CATATTATTGTTTATGTTTC+AGG + chr4_3:68298532-68298551 Msa0658280:intron 20.0%
!! GTAACAAAAAAATTAGATCT+TGG + chr4_3:68298964-68298983 Msa0658280:three_prime_UTR 20.0%
!! AAAAAAATTAGATCTTGGTT+TGG + chr4_3:68298969-68298988 Msa0658280:three_prime_UTR 20.0%
! TAGTATCATTCATTCATACA+TGG + chr4_3:68294563-68294582 Msa0658280:CDS 25.0%
!!! TTAAGTTGAATTACATGACA+CGG - chr4_3:68294737-68294756 None:intergenic 25.0%
! TGTTCAAAATGACAACTTAT+TGG + chr4_3:68295099-68295118 Msa0658280:CDS 25.0%
! TATATCGCTAAAATAGACAA+TGG - chr4_3:68295282-68295301 None:intergenic 25.0%
! TACTGAAATAGTTTCTATGA+TGG - chr4_3:68295339-68295358 None:intergenic 25.0%
! ACTATTTCAGTATATTAGCA+AGG + chr4_3:68295347-68295366 Msa0658280:intron 25.0%
! GTGAAAATTATTGAACATGA+AGG + chr4_3:68295795-68295814 Msa0658280:intron 25.0%
!!! TGTACTTTTAAGTTTATGGT+TGG - chr4_3:68295840-68295859 None:intergenic 25.0%
! AATACATTAGAAGTCAATTC+AGG - chr4_3:68296004-68296023 None:intergenic 25.0%
! TACAGAAGCTATAACAAAAT+TGG - chr4_3:68296090-68296109 None:intergenic 25.0%
! TATAATTCTGTAATCACCAT+TGG - chr4_3:68296231-68296250 None:intergenic 25.0%
!! CTTTTCTGTTATAAAAGAGA+GGG - chr4_3:68296692-68296711 None:intergenic 25.0%
!! ACTTTTCTGTTATAAAAGAG+AGG - chr4_3:68296693-68296712 None:intergenic 25.0%
! CTAACCTTAATAGATGAAAT+AGG - chr4_3:68296747-68296766 None:intergenic 25.0%
!! CATCTATTAAGGTTAGTTAT+TGG + chr4_3:68296751-68296770 Msa0658280:intron 25.0%
! ATGTGAGTTTCAGATTTAAA+AGG - chr4_3:68296915-68296934 None:intergenic 25.0%
!!! TTTTAAATCTGAAACTCACA+TGG + chr4_3:68296914-68296933 Msa0658280:intron 25.0%
! ATAAGAAATAAAAGGAAGTG+AGG - chr4_3:68297089-68297108 None:intergenic 25.0%
! TCAAAGATAAAACACTTACT+CGG - chr4_3:68297265-68297284 None:intergenic 25.0%
! ATTCATAGAAAATCGAATCA+CGG + chr4_3:68297363-68297382 Msa0658280:intron 25.0%
! ACTCATCAATTCAAAACAAA+AGG + chr4_3:68297438-68297457 Msa0658280:intron 25.0%
!!! ATTCAATAAGTGCTACTTTA+TGG - chr4_3:68297787-68297806 None:intergenic 25.0%
! AACGAAACTAGAAATAATTC+CGG + chr4_3:68298030-68298049 Msa0658280:intron 25.0%
! CAGAGTTTAGAAAACAAAAA+TGG - chr4_3:68298093-68298112 None:intergenic 25.0%
! TAAAACAGATTTACTCTTCT+TGG + chr4_3:68298202-68298221 Msa0658280:intron 25.0%
!! CAATCCAATTTTCAGAAATT+AGG - chr4_3:68298429-68298448 None:intergenic 25.0%
! AACAACACAACAATGAAAAA+TGG - chr4_3:68298493-68298512 None:intergenic 25.0%
!!! TGGTGTTATATAGTATGATT+CGG + chr4_3:68298763-68298782 Msa0658280:three_prime_UTR 25.0%
!!! TAATTTGCATGACATAGTTT+TGG - chr4_3:68298917-68298936 None:intergenic 25.0%
!! TAATGTTGTTATTACCTGTT+AGG + chr4_3:68298993-68299012 Msa0658280:three_prime_UTR 25.0%
! TAAAGTTAACTAATCCTAAC+AGG - chr4_3:68299010-68299029 None:intergenic 25.0%
!! ACTTTACCATTTTCCAAAAA+TGG + chr4_3:68299024-68299043 Msa0658280:three_prime_UTR 25.0%
! TAAGTTGAATTACATGACAC+GGG - chr4_3:68294736-68294755 None:intergenic 30.0%
AAATGCAACAAAGTTGGAAA+CGG - chr4_3:68295257-68295276 None:intergenic 30.0%
ATGGAAAAATGCAACAAAGT+TGG - chr4_3:68295263-68295282 None:intergenic 30.0%
!!! ATCTTGTTTTTACAACTTGC+AGG + chr4_3:68295507-68295526 Msa0658280:intron 30.0%
TAAACATTGTCTCAAACATG+TGG + chr4_3:68295693-68295712 Msa0658280:intron 30.0%
! TGAAATGCACATGACAATTT+TGG + chr4_3:68295752-68295771 Msa0658280:intron 30.0%
!! GACAATTTTGGATTTTCAAG+TGG + chr4_3:68295764-68295783 Msa0658280:intron 30.0%
TGTTCTTAATAATTGGTGTG+AGG + chr4_3:68295875-68295894 Msa0658280:intron 30.0%
ATCCAAACTATCTTGTATTC+TGG + chr4_3:68295958-68295977 Msa0658280:intron 30.0%
TATTGTTCCCAAAGTTAGTT+AGG + chr4_3:68296043-68296062 Msa0658280:intron 30.0%
AACTAAGCCTAACTAACTTT+GGG - chr4_3:68296053-68296072 None:intergenic 30.0%
GACTCCTATTTCATCTATTA+AGG + chr4_3:68296740-68296759 Msa0658280:intron 30.0%
!!! TATGATAGAACACTGGTTTT+TGG - chr4_3:68296784-68296803 None:intergenic 30.0%
ACAATTACCTTAGGTTTAAG+AGG - chr4_3:68297010-68297029 None:intergenic 30.0%
CTACTCATAACAATTACCTT+AGG - chr4_3:68297019-68297038 None:intergenic 30.0%
TACAGTTAACAGAGAAAACT+GGG - chr4_3:68297149-68297168 None:intergenic 30.0%
TTACAGTTAACAGAGAAAAC+TGG - chr4_3:68297150-68297169 None:intergenic 30.0%
AAAGAACCAAAACTAACTGA+TGG - chr4_3:68297187-68297206 None:intergenic 30.0%
TAGTTAGTATTTGCAAGCTT+CGG + chr4_3:68297287-68297306 Msa0658280:intron 30.0%
TCTATGAATTCTCGTGAAAT+AGG - chr4_3:68297352-68297371 None:intergenic 30.0%
TGCACAAGACATTAAAATGA+CGG + chr4_3:68297482-68297501 Msa0658280:intron 30.0%
AAAGCTTTCGTTACCATTAA+CGG + chr4_3:68297580-68297599 Msa0658280:intron 30.0%
TTTAGTAACTCGTAACTGTT+GGG - chr4_3:68297840-68297859 None:intergenic 30.0%
ATTTAGTAACTCGTAACTGT+TGG - chr4_3:68297841-68297860 None:intergenic 30.0%
! TGTCCCTAATTTCTGAAAAT+TGG + chr4_3:68298422-68298441 Msa0658280:intron 30.0%
TTATCTATTGAGATGGAAGA+TGG - chr4_3:68298702-68298721 None:intergenic 30.0%
GTGTGATTAACTAACTGTGA+GGG - chr4_3:68294680-68294699 None:intergenic 35.0%
AGTGTGATTAACTAACTGTG+AGG - chr4_3:68294681-68294700 None:intergenic 35.0%
AAGTTGAATTACATGACACG+GGG - chr4_3:68294735-68294754 None:intergenic 35.0%
! TTTTGCCAAGAAATCCAAGA+GGG + chr4_3:68295036-68295055 Msa0658280:CDS 35.0%
AAGGAGAGTTAGTTGAATTC+AGG + chr4_3:68295366-68295385 Msa0658280:intron 35.0%
TTTGGCTGGCATTAAGAAAT+CGG - chr4_3:68295414-68295433 None:intergenic 35.0%
TCTTGTGTAAAACCAAGCTT+TGG - chr4_3:68295432-68295451 None:intergenic 35.0%
CTTGTGTATGCAAATTTCCA+CGG - chr4_3:68295462-68295481 None:intergenic 35.0%
AACTTGCAAAACAGAAAAGC+AGG - chr4_3:68295617-68295636 None:intergenic 35.0%
ACCATAAAGCAATACTGTTG+TGG + chr4_3:68295720-68295739 Msa0658280:intron 35.0%
CCATAAAGCAATACTGTTGT+GGG + chr4_3:68295721-68295740 Msa0658280:intron 35.0%
CACCAGAATACAAGATAGTT+TGG - chr4_3:68295963-68295982 None:intergenic 35.0%
CAAACTATCTTGTATTCTGG+TGG + chr4_3:68295961-68295980 Msa0658280:intron 35.0%
GAACTAAGCCTAACTAACTT+TGG - chr4_3:68296054-68296073 None:intergenic 35.0%
TAGTTAGGCTTAGTTCAGTT+AGG + chr4_3:68296058-68296077 Msa0658280:intron 35.0%
! ATAACTGAGCTGATTTCTTG+TGG + chr4_3:68296257-68296276 Msa0658280:intron 35.0%
TTTCTCCTCTTATATGCAGT+TGG + chr4_3:68296332-68296351 Msa0658280:intron 35.0%
CAAAACCAACTGCATATAAG+AGG - chr4_3:68296340-68296359 None:intergenic 35.0%
!!! ATGCAGTTGGTTTTGAAATG+TGG + chr4_3:68296345-68296364 Msa0658280:intron 35.0%
CATCTAAGTTACCTGTCTAT+TGG - chr4_3:68296468-68296487 None:intergenic 35.0%
CAATAGACAGGTAACTTAGA+TGG + chr4_3:68296466-68296485 Msa0658280:intron 35.0%
CTGTTATAAAAGAGAGGGAA+GGG - chr4_3:68296687-68296706 None:intergenic 35.0%
TCTGTTATAAAAGAGAGGGA+AGG - chr4_3:68296688-68296707 None:intergenic 35.0%
! TAAGGTTAGTTATTGGGCTT+AGG + chr4_3:68296758-68296777 Msa0658280:intron 35.0%
CTTCACTTATGATAGAACAC+TGG - chr4_3:68296791-68296810 None:intergenic 35.0%
CAGTGTTCTATCATAAGTGA+AGG + chr4_3:68296789-68296808 Msa0658280:intron 35.0%
TCTATCATAAGTGAAGGAAC+TGG + chr4_3:68296795-68296814 Msa0658280:intron 35.0%
! AAGCACTGTTGAATGAAGAT+TGG + chr4_3:68296868-68296887 Msa0658280:intron 35.0%
! TAAATCTGAAACTCACATGG+TGG + chr4_3:68296917-68296936 Msa0658280:intron 35.0%
! CCTTTTCAGATTCTACTACT+TGG - chr4_3:68296956-68296975 None:intergenic 35.0%
CCAAGTAGTAGAATCTGAAA+AGG + chr4_3:68296953-68296972 Msa0658280:intron 35.0%
!! ATCTGAAAAGGAAGCATTGA+AGG + chr4_3:68296965-68296984 Msa0658280:intron 35.0%
TAAAACTGATGCCTTTGCTA+TGG + chr4_3:68297236-68297255 Msa0658280:intron 35.0%
!! GTGAAATAGGAAGTGTTTGA+CGG - chr4_3:68297339-68297358 None:intergenic 35.0%
GTTACCATTAACGGAAAACT+GGG + chr4_3:68297589-68297608 Msa0658280:intron 35.0%
GTTACGAGTTACTAAATGCA+TGG + chr4_3:68297844-68297863 Msa0658280:intron 35.0%
! GCTATGAACTGATTCAGTTA+TGG - chr4_3:68297895-68297914 None:intergenic 35.0%
CCAAGCTTACACTATCTTAA+AGG - chr4_3:68297929-68297948 None:intergenic 35.0%
!! CCTTTAAGATAGTGTAAGCT+TGG + chr4_3:68297926-68297945 Msa0658280:intron 35.0%
! AAGCTTGGCATTGTTATTAG+CGG + chr4_3:68297941-68297960 Msa0658280:intron 35.0%
GTTGTGAGAAAAGTTATTGC+TGG - chr4_3:68298056-68298075 None:intergenic 35.0%
!! GTTTTAACCTCACTAATTCC+AGG - chr4_3:68298188-68298207 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGCACAT+AGG + chr4_3:68298364-68298383 Msa0658280:CDS 35.0%
AATGAAAAATGGATGTGCCA+TGG - chr4_3:68298482-68298501 None:intergenic 35.0%
!! ACCTTTGTTGGTCTTGTATA+CGG + chr4_3:68298558-68298577 Msa0658280:CDS 35.0%
TAGCGAGTTATCTATTGAGA+TGG - chr4_3:68298709-68298728 None:intergenic 35.0%
ACATTTGCAAACAGATCTCT+TGG - chr4_3:68298802-68298821 None:intergenic 35.0%
!!! ATGAGGCCATTTTTGGAAAA+TGG - chr4_3:68299033-68299052 None:intergenic 35.0%
!! AAAAGGAATGAGGCCATTTT+TGG - chr4_3:68299040-68299059 None:intergenic 35.0%
! AAAAATGGCCTCATTCCTTT+TGG + chr4_3:68299039-68299058 Msa0658280:three_prime_UTR 35.0%
! AAAATGGCCTCATTCCTTTT+GGG + chr4_3:68299040-68299059 Msa0658280:three_prime_UTR 35.0%
!!! TTCCTTTTGGGACAAAACTT+TGG + chr4_3:68299052-68299071 Msa0658280:three_prime_UTR 35.0%
!! AACCAAAGTTTTGTCCCAAA+AGG - chr4_3:68299057-68299076 None:intergenic 35.0%
! CTTTTGCCAAGAAATCCAAG+AGG + chr4_3:68295035-68295054 Msa0658280:CDS 40.0%
GAGAGATCTACAGATGTATC+AGG - chr4_3:68295067-68295086 None:intergenic 40.0%
!! CAAAGTTGGAAACGGATTGA+AGG - chr4_3:68295249-68295268 None:intergenic 40.0%
TTACACAAGATTGTTAGCCG+TGG + chr4_3:68295442-68295461 Msa0658280:intron 40.0%
TCTCATGTTGCGTCAATAGA+AGG + chr4_3:68295532-68295551 Msa0658280:CDS 40.0%
CCCACAACAGTATTGCTTTA+TGG - chr4_3:68295724-68295743 None:intergenic 40.0%
!!! GGATTTTCAAGTGGTATCAC+AGG + chr4_3:68295773-68295792 Msa0658280:intron 40.0%
ACTATCTTGTATTCTGGTGG+TGG + chr4_3:68295964-68295983 Msa0658280:intron 40.0%
CTATCTTGTATTCTGGTGGT+GGG + chr4_3:68295965-68295984 Msa0658280:intron 40.0%
!! ACTTCTCTGAAGCTAACCAA+TGG + chr4_3:68296212-68296231 Msa0658280:intron 40.0%
TGGCATCTTGAGATGATTAC+AGG + chr4_3:68296365-68296384 Msa0658280:CDS 40.0%
!! GCTCTTTGCTATTGAAGACT+TGG + chr4_3:68296414-68296433 Msa0658280:CDS 40.0%
!! TTTGCTATTGAAGACTTGGC+CGG + chr4_3:68296418-68296437 Msa0658280:CDS 40.0%
TCACTAGACTCAGCAAAATC+CGG - chr4_3:68296440-68296459 None:intergenic 40.0%
ATGAGCTTAGAGCTCTACAA+TGG + chr4_3:68296536-68296555 Msa0658280:intron 40.0%
!! TAAGAGCATTATGCTCTGGT+AGG - chr4_3:68296606-68296625 None:intergenic 40.0%
!! TGGTTAAGAGCATTATGCTC+TGG - chr4_3:68296610-68296629 None:intergenic 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG - chr4_3:68296630-68296649 None:intergenic 40.0%
TTCAGATTCTACTACTTGGC+AGG - chr4_3:68296952-68296971 None:intergenic 40.0%
CACAGATCCTCTTAAACCTA+AGG + chr4_3:68297000-68297019 Msa0658280:intron 40.0%
! TGCGTGAGAATTGATAATCG+TGG - chr4_3:68297063-68297082 None:intergenic 40.0%
ACCAAAACTAACTGATGGCT+CGG - chr4_3:68297182-68297201 None:intergenic 40.0%
!! AAATAGGAAGTGTTTGACGG+AGG - chr4_3:68297336-68297355 None:intergenic 40.0%
ATCAGTCATGTCGTGTAACA+AGG + chr4_3:68297399-68297418 Msa0658280:intron 40.0%
TTGATGAGTGACTACAGTGT+TGG - chr4_3:68297427-68297446 None:intergenic 40.0%
!!! TGGTTTTGGTTCTCTTCTTG+GGG - chr4_3:68297548-68297567 None:intergenic 40.0%
!!! GTGGTTTTGGTTCTCTTCTT+GGG - chr4_3:68297549-68297568 None:intergenic 40.0%
ACGAAAGCTTTCAAGCCATT+GGG - chr4_3:68297571-68297590 None:intergenic 40.0%
AACGAAAGCTTTCAAGCCAT+TGG - chr4_3:68297572-68297591 None:intergenic 40.0%
CGTTACCATTAACGGAAAAC+TGG + chr4_3:68297588-68297607 Msa0658280:intron 40.0%
TGAGACAAGTGCATAAGAGA+AGG + chr4_3:68297637-68297656 Msa0658280:intron 40.0%
TGCGTGAGAATCAATAATCG+TGG + chr4_3:68297677-68297696 Msa0658280:intron 40.0%
GCACTCCTAACAATTACCTT+TGG + chr4_3:68297722-68297741 Msa0658280:intron 40.0%
CTCCTAACAATTACCTTTGG+AGG + chr4_3:68297725-68297744 Msa0658280:intron 40.0%
AGCCTCCAAAGGTAATTGTT+AGG - chr4_3:68297730-68297749 None:intergenic 40.0%
! ATTACCTTTGGAGGCTTAAG+AGG + chr4_3:68297734-68297753 Msa0658280:intron 40.0%
TGAGAAAAGTTATTGCTGGC+CGG - chr4_3:68298052-68298071 None:intergenic 40.0%
CGGCAATATAATCCAAAGGT+TGG - chr4_3:68298154-68298173 None:intergenic 40.0%
GCAACGGCAATATAATCCAA+AGG - chr4_3:68298158-68298177 None:intergenic 40.0%
AATTCCAGGCAAAACTGCAA+CGG - chr4_3:68298174-68298193 None:intergenic 40.0%
! AGTTTTGCCTGGAATTAGTG+AGG + chr4_3:68298178-68298197 Msa0658280:CDS 40.0%
ATCCTACCATCTTGAATTCC+AGG + chr4_3:68298270-68298289 Msa0658280:intron 40.0%
TTCCTGGAATTCAAGATGGT+AGG - chr4_3:68298275-68298294 None:intergenic 40.0%
GTAGTTCCTGGAATTCAAGA+TGG - chr4_3:68298279-68298298 None:intergenic 40.0%
! AATGAACTGGACGAGTATTG+CGG + chr4_3:68298330-68298349 Msa0658280:CDS 40.0%
GAAACTATTCCTTTGCCATC+TGG + chr4_3:68298395-68298414 Msa0658280:CDS 40.0%
CATGGAGAGGATACGATAAA+AGG - chr4_3:68298464-68298483 None:intergenic 40.0%
! CTTTTATCGTATCCTCTCCA+TGG + chr4_3:68298462-68298481 Msa0658280:intron 40.0%
TCCGTATACAAGACCAACAA+AGG - chr4_3:68298562-68298581 None:intergenic 40.0%
TATAACACCAAACCCATCGA+CGG - chr4_3:68298753-68298772 None:intergenic 40.0%
! GTTTTGTCCCAAAAGGAATG+AGG - chr4_3:68299050-68299069 None:intergenic 40.0%
AGTGTGCGAGAGATAAAGCA+TGG - chr4_3:68294589-68294608 None:intergenic 45.0%
GATAGTACTACAGCAACTCC+AGG - chr4_3:68294619-68294638 None:intergenic 45.0%
TCCTTCCCTCTTGGATTTCT+TGG - chr4_3:68295044-68295063 None:intergenic 45.0%
! GGGTTAGCATTCTCAACAAG+TGG - chr4_3:68295139-68295158 None:intergenic 45.0%
ATGCTAACCCTATTCCTTCC+AGG + chr4_3:68295149-68295168 Msa0658280:CDS 45.0%
!! CAAGCTTGCATACTGACTTC+TGG + chr4_3:68295184-68295203 Msa0658280:CDS 45.0%
!! TCTGGTCTCATTGCTGCTTT+CGG + chr4_3:68295202-68295221 Msa0658280:CDS 45.0%
!! AAACGGATTGAAGGAGAACC+TGG - chr4_3:68295240-68295259 None:intergenic 45.0%
TCTTAATGCCAGCCAAAGCT+TGG + chr4_3:68295417-68295436 Msa0658280:intron 45.0%
! GTGTAAAACCAAGCTTTGGC+TGG - chr4_3:68295428-68295447 None:intergenic 45.0%
TGCGTCAATAGAAGGATTGC+CGG + chr4_3:68295540-68295559 Msa0658280:CDS 45.0%
AATAGAAGGATTGCCGGTCT+TGG + chr4_3:68295546-68295565 Msa0658280:CDS 45.0%
TGGGAACAATAGTGACTGTG+TGG - chr4_3:68296034-68296053 None:intergenic 45.0%
TAGTGAAGCAGCCAATAGAC+AGG + chr4_3:68296454-68296473 Msa0658280:CDS 45.0%
AGCTTAGAGCTCTACAATGG+TGG + chr4_3:68296539-68296558 Msa0658280:intron 45.0%
GCTTAGAGCTCTACAATGGT+GGG + chr4_3:68296540-68296559 Msa0658280:intron 45.0%
TGTCACACTGTCATTGCAGT+TGG + chr4_3:68296840-68296859 Msa0658280:intron 45.0%
!! AGGAAGCATTGAAGGTGAAG+TGG + chr4_3:68296973-68296992 Msa0658280:intron 45.0%
TAACAGAGAAAACTGGGAGC+AGG - chr4_3:68297143-68297162 None:intergenic 45.0%
!! TCCGAGCCATCAGTTAGTTT+TGG + chr4_3:68297178-68297197 Msa0658280:intron 45.0%
TTACTCGGACACCATAGCAA+AGG - chr4_3:68297250-68297269 None:intergenic 45.0%
!!! GGTGGTTTTGGTTCTCTTCT+TGG - chr4_3:68297550-68297569 None:intergenic 45.0%
AGAGAACCAAAACCACCCAA+TGG + chr4_3:68297553-68297572 Msa0658280:intron 45.0%
! TTCAAGCCATTGGGTGGTTT+TGG - chr4_3:68297562-68297581 None:intergenic 45.0%
AAAGCTTTCAAGCCATTGGG+TGG - chr4_3:68297568-68297587 None:intergenic 45.0%
! TGCTCCCAGTTTTCCGTTAA+TGG - chr4_3:68297596-68297615 None:intergenic 45.0%
ATTAACGGAAAACTGGGAGC+AGG + chr4_3:68297595-68297614 Msa0658280:intron 45.0%
AGTGCATAAGAGAAGGAAGC+AGG + chr4_3:68297644-68297663 Msa0658280:intron 45.0%
TGCATGCACGTTATAAGTCG+TGG + chr4_3:68297758-68297777 Msa0658280:intron 45.0%
AGAGAGCTAAGGACCTGATT+TGG - chr4_3:68298131-68298150 None:intergenic 45.0%
!! TTCCAGGAACTACTTTTCCG+CGG + chr4_3:68298286-68298305 Msa0658280:intron 45.0%
!!! TGCCACTTTTGGGAATGAAC+TGG + chr4_3:68298317-68298336 Msa0658280:CDS 45.0%
GTCCAGTTCATTCCCAAAAG+TGG - chr4_3:68298322-68298341 None:intergenic 45.0%
! GCGGTAGCTGCTTTAATCTT+TGG + chr4_3:68298349-68298368 Msa0658280:CDS 45.0%
! GGTGTTTTGCACATAGGCAA+TGG + chr4_3:68298370-68298389 Msa0658280:CDS 45.0%
AATTAGGGACATGCACCAGA+TGG - chr4_3:68298413-68298432 None:intergenic 45.0%
AAAATGGATGTGCCATGGAG+AGG - chr4_3:68298477-68298496 None:intergenic 45.0%
TGTTTCAGGGCAACCTTTGT+TGG + chr4_3:68298546-68298565 Msa0658280:intron 45.0%
TTCACTGCATGAGAAGCCAT+GGG - chr4_3:68298618-68298637 None:intergenic 45.0%
CATGCAGTGAACAACCTGAT+AGG + chr4_3:68298627-68298646 Msa0658280:CDS 45.0%
CAGTGAACAACCTGATAGGA+GGG + chr4_3:68298631-68298650 Msa0658280:CDS 45.0%
! ACCTGATAGGAGGGCTTTTA+TGG + chr4_3:68298640-68298659 Msa0658280:CDS 45.0%
! TGATAGGAGGGCTTTTATGG+CGG + chr4_3:68298643-68298662 Msa0658280:CDS 45.0%
ATAACACCAAACCCATCGAC+GGG - chr4_3:68298752-68298771 None:intergenic 45.0%
!!! TATAATATTCAAATTTTAAA+TGG - chr4_3:68297971-68297990 None:intergenic 5.0%
TCTCGCACACTCTCAATTCC+TGG + chr4_3:68294598-68294617 Msa0658280:CDS 50.0%
ACTGTGAGGGAGAGTGATGA+AGG - chr4_3:68294667-68294686 None:intergenic 50.0%
GCCAAGAAATCCAAGAGGGA+AGG + chr4_3:68295040-68295059 Msa0658280:CDS 50.0%
TGTATCAGGTCCTTCCCTCT+TGG - chr4_3:68295053-68295072 None:intergenic 50.0%
CAGCACTCCTGGAAGGAATA+GGG - chr4_3:68295159-68295178 None:intergenic 50.0%
ACAGCACTCCTGGAAGGAAT+AGG - chr4_3:68295160-68295179 None:intergenic 50.0%
!! CTGGTCTCATTGCTGCTTTC+GGG + chr4_3:68295203-68295222 Msa0658280:CDS 50.0%
TCTGTAGAGCAGTCCAAGAC+CGG - chr4_3:68295562-68295581 None:intergenic 50.0%
GAAGGGTAGTGTGTAACTCG+TGG - chr4_3:68296670-68296689 None:intergenic 50.0%
GCATCCTCTTAAGCCTCCAA+AGG - chr4_3:68297741-68297760 None:intergenic 50.0%
CCAAAGGTTGGAGAGAGCTA+AGG - chr4_3:68298142-68298161 None:intergenic 50.0%
! CCTTAGCTCTCTCCAACCTT+TGG + chr4_3:68298139-68298158 Msa0658280:CDS 50.0%
! ATTGCCGTTGCAGTTTTGCC+TGG + chr4_3:68298167-68298186 Msa0658280:CDS 50.0%
GTTCACTGCATGAGAAGCCA+TGG - chr4_3:68298619-68298638 None:intergenic 50.0%
GCAGTGAACAACCTGATAGG+AGG + chr4_3:68298630-68298649 Msa0658280:CDS 50.0%
GCCATAAAAGCCCTCCTATC+AGG - chr4_3:68298644-68298663 None:intergenic 50.0%
TTATTCAACCTCCCCGTCGA+TGG + chr4_3:68298737-68298756 Msa0658280:three_prime_UTR 50.0%
TATTCAACCTCCCCGTCGAT+GGG + chr4_3:68298738-68298757 Msa0658280:three_prime_UTR 50.0%
TAACACCAAACCCATCGACG+GGG - chr4_3:68298751-68298770 None:intergenic 50.0%
TGAAGCACAGCACTCCTGGA+AGG - chr4_3:68295166-68295185 None:intergenic 55.0%
AGCTTGAAGCACAGCACTCC+TGG - chr4_3:68295170-68295189 None:intergenic 55.0%
TTTCGGGACAGTGATTCGCC+AGG + chr4_3:68295219-68295238 Msa0658280:CDS 55.0%
!! TGGTAGGAGTGTTCGCACTC+TGG - chr4_3:68296590-68296609 None:intergenic 55.0%
!!! GGCGCAGTTCTGCCACTTTT+GGG + chr4_3:68298307-68298326 Msa0658280:CDS 55.0%
GGACATGCACCAGATGGCAA+AGG - chr4_3:68298407-68298426 None:intergenic 55.0%
CATGGGAACTGCAAGGCTAG+AGG - chr4_3:68298601-68298620 None:intergenic 55.0%
!! CTCTAGCCTTGCAGTTCCCA+TGG + chr4_3:68298599-68298618 Msa0658280:CDS 55.0%
GAGAAGCCATGGGAACTGCA+AGG - chr4_3:68298608-68298627 None:intergenic 55.0%
CTGCTCCCGAGATCCTGTCT+CGG + chr4_3:68297519-68297538 Msa0658280:intron 60.0%
GGTCACCGAGACAGGATCTC+GGG - chr4_3:68297527-68297546 None:intergenic 60.0%
GGGTCACCGAGACAGGATCT+CGG - chr4_3:68297528-68297547 None:intergenic 60.0%
CTTCTTGGGGTCACCGAGAC+AGG - chr4_3:68297535-68297554 None:intergenic 60.0%
CGCCGCGGAAAAGTAGTTCC+TGG - chr4_3:68298291-68298310 None:intergenic 60.0%
AAAGTGGCAGAACTGCGCCG+CGG - chr4_3:68298306-68298325 None:intergenic 60.0%
!!! CGGCGCAGTTCTGCCACTTT+TGG + chr4_3:68298306-68298325 Msa0658280:CDS 60.0%
! AACCTCCCCGTCGATGGGTT+TGG + chr4_3:68298743-68298762 Msa0658280:three_prime_UTR 60.0%
CACCAAACCCATCGACGGGG+AGG - chr4_3:68298748-68298767 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 68294503 68299087 68294503 ID=Msa0658280;Name=Msa0658280
chr4_3 mRNA 68294503 68299087 68294503 ID=Msa0658280-mRNA-1;Parent=Msa0658280;Name=Msa0658280-mRNA-1;_AED=0.24;_eAED=0.24;_QI=43|1|1|1|1|1|7|401|290
chr4_3 exon 68294503 68294684 68294503 ID=Msa0658280-mRNA-1:exon:19770;Parent=Msa0658280-mRNA-1
chr4_3 exon 68295014 68295240 68295014 ID=Msa0658280-mRNA-1:exon:19771;Parent=Msa0658280-mRNA-1
chr4_3 exon 68295529 68295589 68295529 ID=Msa0658280-mRNA-1:exon:19772;Parent=Msa0658280-mRNA-1
chr4_3 exon 68296351 68296475 68296351 ID=Msa0658280-mRNA-1:exon:19773;Parent=Msa0658280-mRNA-1
chr4_3 exon 68298137 68298199 68298137 ID=Msa0658280-mRNA-1:exon:19774;Parent=Msa0658280-mRNA-1
chr4_3 exon 68298292 68298416 68298292 ID=Msa0658280-mRNA-1:exon:19775;Parent=Msa0658280-mRNA-1
chr4_3 exon 68298554 68299087 68298554 ID=Msa0658280-mRNA-1:exon:19776;Parent=Msa0658280-mRNA-1
chr4_3 five_prime_UTR 68294503 68294545 68294503 ID=Msa0658280-mRNA-1:five_prime_utr;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68294546 68294684 68294546 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68295014 68295240 68295014 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68295529 68295589 68295529 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68296351 68296475 68296351 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68298137 68298199 68298137 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68298292 68298416 68298292 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 CDS 68298554 68298686 68298554 ID=Msa0658280-mRNA-1:cds;Parent=Msa0658280-mRNA-1
chr4_3 three_prime_UTR 68298687 68299087 68298687 ID=Msa0658280-mRNA-1:three_prime_utr;Parent=Msa0658280-mRNA-1
Gene Sequence

>Msa0658280

ATGCTTCATATATTATGTAGTATCATTCATTCATACATGGCCATGCTTTATCTCTCGCACACTCTCAATTCCTGGAGTTGCTGTAGTACTATCGCTCACACAGCATACTCTACTGCTACCTTCATCACTCTCCCTCACAGGAGTAGATATAACACATGTTCTTTTGCCAAGAAATCCAAGAGGGAAGGACCTGATACATCTGTAGATCTCTCAAACGACAAATCTGTTCAAAATGACAACTTATTGGACACTTCTCTTAATCCACTTGTTGAGAATGCTAACCCTATTCCTTCCAGGAGTGCTGTGCTTCAAGCTTGCATACTGACTTCTGGTCTCATTGCTGCTTTCGGGACAGTGATTCGCCAGGTGTCTCATGTTGCGTCAATAGAAGGATTGCCGGTCTTGGACTGCTCTACAGAAGTATCATTTGGTTTTGAAATGTGGCATCTTGAGATGATTACAGGAATTGTAGTATTAATATCATCAAGTCGCTCTTTGCTATTGAAGACTTGGCCGGATTTTGCTGAGTCTAGTGAAGCAGCCAATAGACAGGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGAACTACTTTTCCGCGGCGCAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAAGCAGAAATGA

Protein sequence

>Msa0658280

MLHILCSIIHSYMAMLYLSHTLNSWSCCSTIAHTAYSTATFITLPHRSRYNTCSFAKKSKREGPDTSVDLSNDKSVQNDNLLDTSLNPLVENANPIPSRSAVLQACILTSGLIAAFGTVIRQVSHVASIEGLPVLDCSTEVSFGFEMWHLEMITGIVVLISSSRSLLLKTWPDFAESSEAANRQVLSSLQPLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKQK*