AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0053210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053210 MtrunA17_Chr1g0151581 98.413 252 4 0 1 252 1 252 0.0 505
Msa0053210 MtrunA17_Chr5g0401491 47.205 161 84 1 50 210 66 225 4.03e-43 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0053210 AT5G11840.1 61.328 256 75 5 13 248 9 260 9.34e-104 302
Msa0053210 AT5G11840.3 64.674 184 53 2 13 184 9 192 9.03e-81 241
Msa0053210 AT5G11840.4 64.481 183 53 2 13 183 9 191 5.15e-80 239
Msa0053210 AT5G11840.2 60.479 167 54 2 13 167 9 175 1.18e-66 205
Msa0053210 AT5G67370.1 41.451 193 112 1 18 210 49 240 2.42e-42 147

Find 76 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACGACTGGTACTCGTTTA+TGG 0.126473 1_2:+7628510 None:intergenic
GTTGATGGAGGGAATAGTTT+TGG 0.223696 1_2:+7628664 None:intergenic
GATATTGTTGCCATTCTTGC+TGG 0.277198 1_2:+7628700 None:intergenic
TGTTGGTGTGAATGGGAAAA+AGG 0.279842 1_2:+7628635 None:intergenic
CTTTGTTCTGTTGCTGTTGT+TGG 0.287030 1_2:+7628597 None:intergenic
TGGCTTGGTTTGGAACTGTT+GGG 0.311583 1_2:-7628384 Msa0053210:CDS
TGCTGCTTCTAGTGGTGTTT+TGG 0.320044 1_2:-7628329 Msa0053210:CDS
GGTGAAGACTGCTGAGGTTT+TGG 0.325730 1_2:-7626670 Msa0053210:CDS
GGTAATGGTGATTGATTTGT+TGG 0.349076 1_2:+7628618 None:intergenic
GGGTTACCTGTGGCTTGGTT+TGG 0.356647 1_2:-7628394 Msa0053210:CDS
AACGACTGGTACTCGTTTAT+GGG 0.360388 1_2:+7628511 None:intergenic
TCTGTTGCTGTTGTTGGTAA+TGG 0.366769 1_2:+7628603 None:intergenic
TCTAGGATGGGATACTTCTT+AGG 0.373021 1_2:+7625398 None:intergenic
GTGGCTTGGTTTGGAACTGT+TGG 0.374589 1_2:-7628385 Msa0053210:CDS
TTGTTAGGATGTATCTTGGT+TGG 0.396546 1_2:-7628291 Msa0053210:CDS
ATGTTGTTGAATACGGTTCC+CGG 0.401820 1_2:-7628453 Msa0053210:CDS
GATTGATTTGTTGGTGTGAA+TGG 0.406949 1_2:+7628627 None:intergenic
GGTATTAATGTGGAGGGAAA+GGG 0.424446 1_2:-7625363 Msa0053210:three_prime_UTR
TGTTAGGATGTATCTTGGTT+GGG 0.425759 1_2:-7628290 Msa0053210:CDS
AAAAGCCCACAACGAAAAGC+CGG 0.429370 1_2:+7628434 None:intergenic
GCGGTTGTTAGGATGTATCT+TGG 0.430246 1_2:-7628295 Msa0053210:CDS
GGCTGCTGTTCTAACGGAAC+AGG 0.440485 1_2:+7628532 None:intergenic
AACAAGTAACCCAGCAAGAA+TGG 0.440819 1_2:-7628710 Msa0053210:exon
ATCTTGGTTGGGCTTATGTT+GGG 0.441526 1_2:-7628279 Msa0053210:CDS
TTGGCACGTGATAGACTCTT+GGG 0.445944 1_2:-7626651 Msa0053210:CDS
CACCAGCAGCCCATGAAAAC+GGG 0.453557 1_2:+7628476 None:intergenic
AGTCGGTCTGGCAGCATGCT+TGG 0.454960 1_2:-7625586 Msa0053210:CDS
GCTGGTGATGTTGTTGAATA+CGG 0.456887 1_2:-7628460 Msa0053210:CDS
TTTGGCACGTGATAGACTCT+TGG 0.457104 1_2:-7626652 Msa0053210:CDS
TATTTAACATCGAGAGAAAC+CGG 0.458605 1_2:-7625525 Msa0053210:CDS
CTCTGTTTAAGTTCAAGAAA+CGG 0.462020 1_2:-7628565 Msa0053210:CDS
TCACCAGCAGCCCATGAAAA+CGG 0.464675 1_2:+7628475 None:intergenic
TCCAGGTATTGCTCGAACTC+CGG 0.467416 1_2:+7625506 None:intergenic
TATATTGCAGATGAGGAGAC+AGG 0.467504 1_2:-7627334 Msa0053210:intron
ATGTACTATTCTTCAAGATC+AGG 0.468774 1_2:+7625429 None:intergenic
TATCTTGGTTGGGCTTATGT+TGG 0.471423 1_2:-7628280 Msa0053210:CDS
TGGTATTAATGTGGAGGGAA+AGG 0.473092 1_2:-7625364 Msa0053210:three_prime_UTR
GGCTCACCACAAAATGCATC+TGG 0.473478 1_2:+7625450 None:intergenic
GACAGGGTGGTATGATGGCC+AGG 0.475845 1_2:-7627317 Msa0053210:intron
ATACCATGCATGGAGGATCT+AGG 0.480459 1_2:+7625381 None:intergenic
TTGTGGGGTTACCTGTGGCT+TGG 0.484321 1_2:-7628399 Msa0053210:CDS
ATTGATTTGTTGGTGTGAAT+GGG 0.490693 1_2:+7628628 None:intergenic
GAAAATCACTCTAGTCGGTC+TGG 0.491715 1_2:-7625598 Msa0053210:CDS
GTGAAATGCTACTACATGTA+TGG 0.492083 1_2:+7625280 None:intergenic
ACCGGAGTTCGAGCAATACC+TGG 0.506149 1_2:-7625507 Msa0053210:CDS
GGCTTGGTTTGGAACTGTTG+GGG 0.506638 1_2:-7628383 Msa0053210:CDS
GCACAAACAATTCTCTTAGC+AGG 0.508243 1_2:+7628349 None:intergenic
GCTCTGTTTCACTTTGCCGT+TGG 0.508588 1_2:+7628742 None:intergenic
GAGGAGACAGGGTGGTATGA+TGG 0.516290 1_2:-7627322 Msa0053210:CDS
ATTGTTTGTGCTGCTTCTAG+TGG 0.521546 1_2:-7628337 Msa0053210:CDS
GATTCATCATTGTAAGCTCC+AGG 0.524014 1_2:+7625489 None:intergenic
AAAGCCCACAACGAAAAGCC+GGG 0.532515 1_2:+7628435 None:intergenic
TTTATGGGCTGCTGTTCTAA+CGG 0.540735 1_2:+7628526 None:intergenic
GTATGGTAAGAATTAAGAAA+AGG 0.542763 1_2:+7625297 None:intergenic
CTCCACATTAATACCATGCA+TGG 0.543181 1_2:+7625371 None:intergenic
ATATTGTTGCCATTCTTGCT+GGG 0.548979 1_2:+7628701 None:intergenic
GTATTAATGTGGAGGGAAAG+GGG 0.552360 1_2:-7625362 Msa0053210:three_prime_UTR
CTTGCTTGTGGGGTTACCTG+TGG 0.557353 1_2:-7628404 Msa0053210:CDS
GCAAAGTGAAACAGAGCAGT+AGG 0.560112 1_2:-7628736 Msa0053210:five_prime_UTR
CACAGGTAACCCCACAAGCA+AGG 0.573824 1_2:+7628405 None:intergenic
TTCAAGGTTAAGCCTGTACT+CGG 0.578638 1_2:-7625627 Msa0053210:intron
CTCCATGCATGGTATTAATG+TGG 0.580181 1_2:-7625373 Msa0053210:three_prime_UTR
CATGCATGGAGGATCTAGGA+TGG 0.585585 1_2:+7625385 None:intergenic
GGAACGATGTCGATAACGAC+TGG 0.595019 1_2:+7628497 None:intergenic
AGATTGAAAATCACTCTAGT+CGG 0.609573 1_2:-7625603 Msa0053210:CDS
CATCCTAGATCCTCCATGCA+TGG 0.611902 1_2:-7625384 Msa0053210:three_prime_UTR
CATGCATGGTATTAATGTGG+AGG 0.616854 1_2:-7625370 Msa0053210:three_prime_UTR
ATGCATGGTATTAATGTGGA+GGG 0.620228 1_2:-7625369 Msa0053210:three_prime_UTR
ATGCATGGAGGATCTAGGAT+GGG 0.624436 1_2:+7625386 None:intergenic
ACAGTTCCAAACCAAGCCAC+AGG 0.624924 1_2:+7628388 None:intergenic
GTGGCCAACAACAAAACCAA+CGG 0.646386 1_2:-7628758 None:intergenic
CACATTAATACCATGCATGG+AGG 0.657724 1_2:+7625374 None:intergenic
ATATTGCAGATGAGGAGACA+GGG 0.660822 1_2:-7627333 Msa0053210:intron
AGATACATTACATTCAACAG+TGG 0.729086 1_2:+7628240 None:intergenic
TTGCAGATGAGGAGACAGGG+TGG 0.732719 1_2:-7627330 Msa0053210:intron
GATATGGGTGAAGACTGCTG+AGG 0.749406 1_2:-7626676 Msa0053210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTACATATAAAATCT+TGG - chr1_2:7626723-7626742 Msa0053210:intron 10.0%
!!! GCAATAATTTTATAGTTAAA+CGG - chr1_2:7626490-7626509 Msa0053210:intron 15.0%
!!! TTGTTTATATGGAAGATTTT+TGG + chr1_2:7626288-7626307 None:intergenic 20.0%
!! AAAAATCTTCCATATAAACA+AGG - chr1_2:7626287-7626306 Msa0053210:intron 20.0%
!! TATCATATACGATTAATGTT+AGG - chr1_2:7626518-7626537 Msa0053210:intron 20.0%
!!! ATATTGTTAGTGTTATTCAA+TGG - chr1_2:7626596-7626615 Msa0053210:intron 20.0%
!! TTCATCTACATAAATTCATT+GGG + chr1_2:7626859-7626878 None:intergenic 20.0%
!! TTTCATCTACATAAATTCAT+TGG + chr1_2:7626860-7626879 None:intergenic 20.0%
!! ATTTATGTAGATGAAACTAA+CGG - chr1_2:7626864-7626883 Msa0053210:intron 20.0%
!!! TAATATTAATGTGTCGATTA+TGG + chr1_2:7627096-7627115 None:intergenic 20.0%
!! ATATCTGTAGAGAAATATTT+AGG + chr1_2:7627312-7627331 None:intergenic 20.0%
!! TAAATATTTCTCTACAGATA+TGG - chr1_2:7627311-7627330 Msa0053210:intron 20.0%
!! AAATATTTCTCTACAGATAT+GGG - chr1_2:7627312-7627331 Msa0053210:intron 20.0%
!!! TAAATAATTCCTGAATCTTT+TGG + chr1_2:7627596-7627615 None:intergenic 20.0%
!! GATCTTAAAGACTTAATATT+AGG + chr1_2:7627838-7627857 None:intergenic 20.0%
!! CATAAGGTTAAATTTAACAA+AGG + chr1_2:7628017-7628036 None:intergenic 20.0%
!! CTTTGTTAAATTTAACCTTA+TGG - chr1_2:7628015-7628034 Msa0053210:intron 20.0%
!! CAAAAACATAAATTTCCATA+AGG + chr1_2:7628033-7628052 None:intergenic 20.0%
!!! GAATATCAACAGATTTTAAA+AGG + chr1_2:7628283-7628302 None:intergenic 20.0%
! TTATCTATTACTTCCATGTA+TGG - chr1_2:7625807-7625826 Msa0053210:intron 25.0%
!!! GCTATTTTGATAAACTATCA+TGG - chr1_2:7625896-7625915 Msa0053210:intron 25.0%
! TGTATTTACATCTCACTTAA+GGG + chr1_2:7626002-7626021 None:intergenic 25.0%
! TTGTATTTACATCTCACTTA+AGG + chr1_2:7626003-7626022 None:intergenic 25.0%
!! CAAAATCGAAGATCTTATTT+GGG - chr1_2:7626098-7626117 Msa0053210:intron 25.0%
! TTCATATCATTAACGTATCA+TGG + chr1_2:7626574-7626593 None:intergenic 25.0%
! ATAAAGAGAAAACAATTACC+TGG + chr1_2:7626707-7626726 None:intergenic 25.0%
!! TCTAAAGTCACATATATGAT+TGG - chr1_2:7627155-7627174 Msa0053210:intron 25.0%
!!! AACTTGTTTGTGTTTTACTA+AGG - chr1_2:7627231-7627250 Msa0053210:intron 25.0%
!! ACTTGTTTGTGTTTTACTAA+GGG - chr1_2:7627232-7627251 Msa0053210:intron 25.0%
!! TTTAAGACTATGTAAGTAGT+AGG - chr1_2:7627518-7627537 Msa0053210:intron 25.0%
! TTAAGACTATGTAAGTAGTA+GGG - chr1_2:7627519-7627538 Msa0053210:intron 25.0%
! TGACATATCACAAAATATAG+TGG + chr1_2:7627790-7627809 None:intergenic 25.0%
!! TACAAGATAATTTTCATCAC+AGG + chr1_2:7628061-7628080 None:intergenic 25.0%
! TTCAATTCATCCATTAATTG+AGG - chr1_2:7628214-7628233 Msa0053210:intron 25.0%
! ACTATACAATCCTCAATTAA+TGG + chr1_2:7628227-7628246 None:intergenic 25.0%
!! AAACTCTTTTGTAATGTTCA+AGG - chr1_2:7628360-7628379 Msa0053210:CDS 25.0%
! GTATGGTAAGAATTAAGAAA+AGG + chr1_2:7628709-7628728 None:intergenic 25.0%
!! ATTGATTTGTTGGTGTGAAT+GGG + chr1_2:7625378-7625397 None:intergenic 30.0%
! CTCTGTTTAAGTTCAAGAAA+CGG - chr1_2:7625438-7625457 Msa0053210:CDS 30.0%
AGATACATTACATTCAACAG+TGG + chr1_2:7625766-7625785 None:intergenic 30.0%
GTATTTACATCTCACTTAAG+GGG + chr1_2:7626001-7626020 None:intergenic 30.0%
! CCAAATAAGATCTTCGATTT+TGG + chr1_2:7626100-7626119 None:intergenic 30.0%
CCAAAATCGAAGATCTTATT+TGG - chr1_2:7626097-7626116 Msa0053210:intron 30.0%
TCCAAAATAAGAGTCAATGT+TGG + chr1_2:7626135-7626154 None:intergenic 30.0%
! CAATGGTGTTAAGAAATTTG+TGG - chr1_2:7626613-7626632 Msa0053210:intron 30.0%
GTGTTAAGAAATTTGTGGAA+GGG - chr1_2:7626618-7626637 Msa0053210:intron 30.0%
TTCTGGATTACTTGTTTACT+TGG - chr1_2:7626767-7626786 Msa0053210:intron 30.0%
TTGTGTTGAAATTTCTTCAC+CGG + chr1_2:7626814-7626833 None:intergenic 30.0%
!!! TCTCTTCATTTTGTTTTGGA+TGG - chr1_2:7627009-7627028 Msa0053210:intron 30.0%
!! ATTAATGTGTCGATTATGGA+TGG + chr1_2:7627092-7627111 None:intergenic 30.0%
TTGGTATGGAAATTACTACA+AGG + chr1_2:7627577-7627596 None:intergenic 30.0%
ATTTCCATACCAAAAGATTC+AGG - chr1_2:7627584-7627603 Msa0053210:intron 30.0%
! AATTCCTGAATCTTTTGGTA+TGG + chr1_2:7627591-7627610 None:intergenic 30.0%
ACAAATGTCGTACAAAATAG+AGG - chr1_2:7627728-7627747 Msa0053210:intron 30.0%
CTCACTTGTAGTAAAACATT+AGG - chr1_2:7627903-7627922 Msa0053210:intron 30.0%
AGTGCATAAACATATCAAGA+TGG + chr1_2:7627963-7627982 None:intergenic 30.0%
! ACGATTTTGTCAAATAGGAT+AGG + chr1_2:7628191-7628210 None:intergenic 30.0%
! AAACGACGATTTTGTCAAAT+AGG + chr1_2:7628196-7628215 None:intergenic 30.0%
AGATTGAAAATCACTCTAGT+CGG - chr1_2:7628400-7628419 Msa0053210:CDS 30.0%
TATTTAACATCGAGAGAAAC+CGG - chr1_2:7628478-7628497 Msa0053210:CDS 30.0%
ATGTACTATTCTTCAAGATC+AGG + chr1_2:7628577-7628596 None:intergenic 30.0%
ATATTGTTGCCATTCTTGCT+GGG + chr1_2:7625305-7625324 None:intergenic 35.0%
! TTGATGGAGGGAATAGTTTT+GGG + chr1_2:7625341-7625360 None:intergenic 35.0%
!! AAAGGGTTTTTGTTGATGGA+GGG + chr1_2:7625353-7625372 None:intergenic 35.0%
!! AAAAGGGTTTTTGTTGATGG+AGG + chr1_2:7625354-7625373 None:intergenic 35.0%
! GGAAAAAGGGTTTTTGTTGA+TGG + chr1_2:7625357-7625376 None:intergenic 35.0%
!! GATTGATTTGTTGGTGTGAA+TGG + chr1_2:7625379-7625398 None:intergenic 35.0%
!! GGTAATGGTGATTGATTTGT+TGG + chr1_2:7625388-7625407 None:intergenic 35.0%
! TTTTCTTTTGCCTTGCTTGT+GGG - chr1_2:7625588-7625607 Msa0053210:CDS 35.0%
TTGTTAGGATGTATCTTGGT+TGG - chr1_2:7625712-7625731 Msa0053210:intron 35.0%
TGTTAGGATGTATCTTGGTT+GGG - chr1_2:7625713-7625732 Msa0053210:intron 35.0%
!!! GCCAACATTGACTCTTATTT+TGG - chr1_2:7626131-7626150 Msa0053210:intron 35.0%
ATAAGTGCTAGTGTTACCAA+TGG - chr1_2:7626238-7626257 Msa0053210:intron 35.0%
!! ATCTGTCATGTTTTTGCCAT+AGG + chr1_2:7626322-7626341 None:intergenic 35.0%
TGATTGCATCAATGTGAGAA+TGG - chr1_2:7626466-7626485 Msa0053210:intron 35.0%
GGTGTTAAGAAATTTGTGGA+AGG - chr1_2:7626617-7626636 Msa0053210:intron 35.0%
CTCATCTGCAATATAAAGAG+AGG + chr1_2:7626664-7626683 None:intergenic 35.0%
CTCTCTTTATATTGCAGATG+AGG - chr1_2:7626662-7626681 Msa0053210:CDS 35.0%
GGTTCATCTTTGTATGCTAT+TGG - chr1_2:7626744-7626763 Msa0053210:intron 35.0%
!! TCTTTGTATGCTATTGGTTC+TGG - chr1_2:7626750-7626769 Msa0053210:intron 35.0%
TGGATTACTTGTTTACTTGG+AGG - chr1_2:7626770-7626789 Msa0053210:intron 35.0%
TGTGTTGAAATTTCTTCACC+GGG + chr1_2:7626813-7626832 None:intergenic 35.0%
!!! CTTTATTTTCCACACACTTG+TGG + chr1_2:7626899-7626918 None:intergenic 35.0%
TAAACCAAATGACAGGACAA+GGG + chr1_2:7626966-7626985 None:intergenic 35.0%
!! GAGCTCTCTTCATTTTGTTT+TGG - chr1_2:7627005-7627024 Msa0053210:intron 35.0%
!! TGGTTGTGATTTGTTGATAC+TGG - chr1_2:7627175-7627194 Msa0053210:intron 35.0%
ACAGTAAATGCTATAGCTCT+TGG + chr1_2:7627459-7627478 None:intergenic 35.0%
ATGGAAATTACTACAAGGCA+TGG + chr1_2:7627572-7627591 None:intergenic 35.0%
TTGTACTAAATAGCTCATCG+TGG + chr1_2:7627712-7627731 None:intergenic 35.0%
AATATGACACCTTAGCATAG+CGG - chr1_2:7627752-7627771 Msa0053210:intron 35.0%
ACACTGCAAGTTTCAAATTG+TGG + chr1_2:7628109-7628128 None:intergenic 35.0%
! ATTTTCAATCTACCGAGTAC+AGG + chr1_2:7628391-7628410 None:intergenic 35.0%
! TTTGAACCAGATGCATTTTG+TGG - chr1_2:7628547-7628566 Msa0053210:CDS 35.0%
ATGCATGGTATTAATGTGGA+GGG - chr1_2:7628634-7628653 Msa0053210:CDS 35.0%
GTGAAATGCTACTACATGTA+TGG + chr1_2:7628726-7628745 None:intergenic 35.0%
AACAAGTAACCCAGCAAGAA+TGG - chr1_2:7625293-7625312 Msa0053210:three_prime_UTR 40.0%
GATATTGTTGCCATTCTTGC+TGG + chr1_2:7625306-7625325 None:intergenic 40.0%
!! TGATGGAGGGAATAGTTTTG+GGG + chr1_2:7625340-7625359 None:intergenic 40.0%
!! GTTGATGGAGGGAATAGTTT+TGG + chr1_2:7625342-7625361 None:intergenic 40.0%
GTTGGTGTGAATGGGAAAAA+GGG + chr1_2:7625370-7625389 None:intergenic 40.0%
TGTTGGTGTGAATGGGAAAA+AGG + chr1_2:7625371-7625390 None:intergenic 40.0%
! TCTGTTGCTGTTGTTGGTAA+TGG + chr1_2:7625403-7625422 None:intergenic 40.0%
! CTTTGTTCTGTTGCTGTTGT+TGG + chr1_2:7625409-7625428 None:intergenic 40.0%
! TTTATGGGCTGCTGTTCTAA+CGG + chr1_2:7625480-7625499 None:intergenic 40.0%
AACGACTGGTACTCGTTTAT+GGG + chr1_2:7625495-7625514 None:intergenic 40.0%
TAACGACTGGTACTCGTTTA+TGG + chr1_2:7625496-7625515 None:intergenic 40.0%
! GCTGGTGATGTTGTTGAATA+CGG - chr1_2:7625543-7625562 Msa0053210:CDS 40.0%
ATGTTGTTGAATACGGTTCC+CGG - chr1_2:7625550-7625569 Msa0053210:CDS 40.0%
! CTTTTCTTTTGCCTTGCTTG+TGG - chr1_2:7625587-7625606 Msa0053210:CDS 40.0%
! TTTCTTTTGCCTTGCTTGTG+GGG - chr1_2:7625589-7625608 Msa0053210:CDS 40.0%
GCACAAACAATTCTCTTAGC+AGG + chr1_2:7625657-7625676 None:intergenic 40.0%
!! ATTGTTTGTGCTGCTTCTAG+TGG - chr1_2:7625666-7625685 Msa0053210:intron 40.0%
!!! TGTTTTGGCGGTTACTTTTG+CGG - chr1_2:7625689-7625708 Msa0053210:intron 40.0%
TATCTTGGTTGGGCTTATGT+TGG - chr1_2:7625723-7625742 Msa0053210:intron 40.0%
ATCTTGGTTGGGCTTATGTT+GGG - chr1_2:7625724-7625743 Msa0053210:intron 40.0%
TTGTGCTCTTTCTCCATACA+TGG + chr1_2:7625823-7625842 None:intergenic 40.0%
GTCATTGTTGCAGTCTATAG+CGG - chr1_2:7626345-7626364 Msa0053210:intron 40.0%
! GTGTCGACAAATTTCCATCA+TGG + chr1_2:7626399-7626418 None:intergenic 40.0%
TATATTGCAGATGAGGAGAC+AGG - chr1_2:7626669-7626688 Msa0053210:CDS 40.0%
ATATTGCAGATGAGGAGACA+GGG - chr1_2:7626670-7626689 Msa0053210:CDS 40.0%
! GTTCTAAGTTCTCAAAGTCC+CGG - chr1_2:7626792-7626811 Msa0053210:intron 40.0%
! TATTTTCCACACACTTGTGG+CGG + chr1_2:7626896-7626915 None:intergenic 40.0%
ATTACCCTTGTCCTGTCATT+TGG - chr1_2:7626959-7626978 Msa0053210:intron 40.0%
CTAAACCAAATGACAGGACA+AGG + chr1_2:7626967-7626986 None:intergenic 40.0%
! CTTGTCCTGTCATTTGGTTT+AGG - chr1_2:7626965-7626984 Msa0053210:intron 40.0%
TTGCACCTAAACCAAATGAC+AGG + chr1_2:7626973-7626992 None:intergenic 40.0%
GTTCAAATTCCGCTATGCTA+AGG + chr1_2:7627764-7627783 None:intergenic 40.0%
! CACTTTTACTTGTGTCTGTG+AGG - chr1_2:7628144-7628163 Msa0053210:intron 40.0%
TTCAAGGTTAAGCCTGTACT+CGG - chr1_2:7628376-7628395 Msa0053210:CDS 40.0%
GATTCATCATTGTAAGCTCC+AGG + chr1_2:7628517-7628536 None:intergenic 40.0%
! TCTAGGATGGGATACTTCTT+AGG + chr1_2:7628608-7628627 None:intergenic 40.0%
CACATTAATACCATGCATGG+AGG + chr1_2:7628632-7628651 None:intergenic 40.0%
CTCCATGCATGGTATTAATG+TGG - chr1_2:7628630-7628649 Msa0053210:CDS 40.0%
CTCCACATTAATACCATGCA+TGG + chr1_2:7628635-7628654 None:intergenic 40.0%
CATGCATGGTATTAATGTGG+AGG - chr1_2:7628633-7628652 Msa0053210:CDS 40.0%
TGGTATTAATGTGGAGGGAA+AGG - chr1_2:7628639-7628658 Msa0053210:CDS 40.0%
GGTATTAATGTGGAGGGAAA+GGG - chr1_2:7628640-7628659 Msa0053210:CDS 40.0%
GTATTAATGTGGAGGGAAAG+GGG - chr1_2:7628641-7628660 Msa0053210:CDS 40.0%
GCAAAGTGAAACAGAGCAGT+AGG - chr1_2:7625267-7625286 Msa0053210:three_prime_UTR 45.0%
!!! TAGTTTTGGGGACATGCGTA+TGG + chr1_2:7625328-7625347 None:intergenic 45.0%
! GACATCGTTCCCGTTTTCAT+GGG - chr1_2:7625518-7625537 Msa0053210:CDS 45.0%
AAAAGCCCACAACGAAAAGC+CGG + chr1_2:7625572-7625591 None:intergenic 45.0%
!! TGGCTTGGTTTGGAACTGTT+GGG - chr1_2:7625619-7625638 Msa0053210:CDS 45.0%
!! TGCTGCTTCTAGTGGTGTTT+TGG - chr1_2:7625674-7625693 Msa0053210:intron 45.0%
!! TGCTTCTAGTGGTGTTTTGG+CGG - chr1_2:7625677-7625696 Msa0053210:intron 45.0%
!!! CGGTTACTTTTGCGGTTGTT+AGG - chr1_2:7625697-7625716 Msa0053210:intron 45.0%
GCGGTTGTTAGGATGTATCT+TGG - chr1_2:7625708-7625727 Msa0053210:intron 45.0%
AGTGCTAGTGTTACCAATGG+TGG - chr1_2:7626241-7626260 Msa0053210:intron 45.0%
!! GTGTTACCAATGGTGGATGA+TGG - chr1_2:7626248-7626267 Msa0053210:intron 45.0%
!! ATGTTTTTGCCATAGGCCCA+CGG + chr1_2:7626315-7626334 None:intergenic 45.0%
GACAGGACAAGGGTAATATC+TGG + chr1_2:7626956-7626975 None:intergenic 45.0%
TTTGGCACGTGATAGACTCT+TGG - chr1_2:7627351-7627370 Msa0053210:intron 45.0%
TTGGCACGTGATAGACTCTT+GGG - chr1_2:7627352-7627371 Msa0053210:intron 45.0%
CACGGGTCATCATCAAAACA+TGG + chr1_2:7627636-7627655 None:intergenic 45.0%
CTTGTGTCTGTGAGGAATTG+CGG - chr1_2:7628152-7628171 Msa0053210:intron 45.0%
GAAAATCACTCTAGTCGGTC+TGG - chr1_2:7628405-7628424 Msa0053210:CDS 45.0%
! ATGCATGGAGGATCTAGGAT+GGG + chr1_2:7628620-7628639 None:intergenic 45.0%
ATACCATGCATGGAGGATCT+AGG + chr1_2:7628625-7628644 None:intergenic 45.0%
GCTCTGTTTCACTTTGCCGT+TGG + chr1_2:7625264-7625283 None:intergenic 50.0%
GGAACGATGTCGATAACGAC+TGG + chr1_2:7625509-7625528 None:intergenic 50.0%
! CGACATCGTTCCCGTTTTCA+TGG - chr1_2:7625517-7625536 Msa0053210:CDS 50.0%
TCACCAGCAGCCCATGAAAA+CGG + chr1_2:7625531-7625550 None:intergenic 50.0%
AAAGCCCACAACGAAAAGCC+GGG + chr1_2:7625571-7625590 None:intergenic 50.0%
ACAGTTCCAAACCAAGCCAC+AGG + chr1_2:7625618-7625637 None:intergenic 50.0%
!! GTGGCTTGGTTTGGAACTGT+TGG - chr1_2:7625618-7625637 Msa0053210:CDS 50.0%
!! GGCTTGGTTTGGAACTGTTG+GGG - chr1_2:7625620-7625639 Msa0053210:CDS 50.0%
! TCTCACTTAAGGGGCACGTT+TGG + chr1_2:7625992-7626011 None:intergenic 50.0%
CAGAGTCCATCATCCACCAT+TGG + chr1_2:7626257-7626276 None:intergenic 50.0%
!! CAATGGTGGATGATGGACTC+TGG - chr1_2:7626255-7626274 Msa0053210:intron 50.0%
!! TCCATATAAACAAGGCGCCG+TGG - chr1_2:7626295-7626314 Msa0053210:intron 50.0%
!! CCATATAAACAAGGCGCCGT+GGG - chr1_2:7626296-7626315 Msa0053210:intron 50.0%
TCCATCATGGCGTCATGACA+TGG + chr1_2:7626386-7626405 None:intergenic 50.0%
GATATGGGTGAAGACTGCTG+AGG - chr1_2:7627327-7627346 Msa0053210:CDS 50.0%
! GGTGAAGACTGCTGAGGTTT+TGG - chr1_2:7627333-7627352 Msa0053210:intron 50.0%
TGACCCGTGCTGTCAAATAG+CGG - chr1_2:7627647-7627666 Msa0053210:intron 50.0%
! AGTGCCGCTATTTGACAGCA+CGG + chr1_2:7627654-7627673 None:intergenic 50.0%
! TCCAGGTATTGCTCGAACTC+CGG + chr1_2:7628500-7628519 None:intergenic 50.0%
GGCTCACCACAAAATGCATC+TGG + chr1_2:7628556-7628575 None:intergenic 50.0%
CATGCATGGAGGATCTAGGA+TGG + chr1_2:7628621-7628640 None:intergenic 50.0%
CATCCTAGATCCTCCATGCA+TGG - chr1_2:7628619-7628638 Msa0053210:CDS 50.0%
GGCTGCTGTTCTAACGGAAC+AGG + chr1_2:7625474-7625493 None:intergenic 55.0%
!! TTCCCGTTTTCATGGGCTGC+TGG - chr1_2:7625525-7625544 Msa0053210:CDS 55.0%
CACCAGCAGCCCATGAAAAC+GGG + chr1_2:7625530-7625549 None:intergenic 55.0%
! GGTTCCCGGCTTTTCGTTGT+GGG - chr1_2:7625564-7625583 Msa0053210:CDS 55.0%
CACAGGTAACCCCACAAGCA+AGG + chr1_2:7625601-7625620 None:intergenic 55.0%
CTTGCTTGTGGGGTTACCTG+TGG - chr1_2:7625599-7625618 Msa0053210:CDS 55.0%
TTGTGGGGTTACCTGTGGCT+TGG - chr1_2:7625604-7625623 Msa0053210:CDS 55.0%
!! GGGTTACCTGTGGCTTGGTT+TGG - chr1_2:7625609-7625628 Msa0053210:CDS 55.0%
!! TGGTGGATGATGGACTCTGG+AGG - chr1_2:7626258-7626277 Msa0053210:intron 55.0%
!! CCCACGGCGCCTTGTTTATA+TGG + chr1_2:7626299-7626318 None:intergenic 55.0%
GCCATGTCATGACGCCATGA+TGG - chr1_2:7626382-7626401 Msa0053210:intron 55.0%
TTGCAGATGAGGAGACAGGG+TGG - chr1_2:7626673-7626692 Msa0053210:CDS 55.0%
GAGGAGACAGGGTGGTATGA+TGG - chr1_2:7626681-7626700 Msa0053210:intron 55.0%
! GTGCCGCTATTTGACAGCAC+GGG + chr1_2:7627653-7627672 None:intergenic 55.0%
ACCGGAGTTCGAGCAATACC+TGG - chr1_2:7628496-7628515 Msa0053210:CDS 55.0%
! CGGTTCCCGGCTTTTCGTTG+TGG - chr1_2:7625563-7625582 Msa0053210:CDS 60.0%
GACAGGGTGGTATGATGGCC+AGG - chr1_2:7626686-7626705 Msa0053210:intron 60.0%
TGCAGTCCGCCACAAGTGTG+TGG - chr1_2:7626887-7626906 Msa0053210:intron 60.0%
AGTCGGTCTGGCAGCATGCT+TGG - chr1_2:7628417-7628436 Msa0053210:CDS 60.0%
!! AACAAGGCGCCGTGGGCCTA+TGG - chr1_2:7626303-7626322 Msa0053210:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 7625250 7628775 7625250 ID=Msa0053210;Name=Msa0053210
chr1_2 mRNA 7625250 7628775 7625250 ID=Msa0053210-mRNA-1;Parent=Msa0053210;Name=Msa0053210-mRNA-1;_AED=0.15;_eAED=0.15;_QI=62|1|1|1|1|1|4|184|252
chr1_2 exon 7625250 7625643 7625250 ID=Msa0053210-mRNA-1:exon:2664;Parent=Msa0053210-mRNA-1
chr1_2 exon 7626641 7626697 7626641 ID=Msa0053210-mRNA-1:exon:2663;Parent=Msa0053210-mRNA-1
chr1_2 exon 7627318 7627346 7627318 ID=Msa0053210-mRNA-1:exon:2662;Parent=Msa0053210-mRNA-1
chr1_2 exon 7628251 7628775 7628251 ID=Msa0053210-mRNA-1:exon:2661;Parent=Msa0053210-mRNA-1
chr1_2 five_prime_UTR 7628714 7628775 7628714 ID=Msa0053210-mRNA-1:five_prime_utr;Parent=Msa0053210-mRNA-1
chr1_2 CDS 7628251 7628713 7628251 ID=Msa0053210-mRNA-1:cds;Parent=Msa0053210-mRNA-1
chr1_2 CDS 7627318 7627346 7627318 ID=Msa0053210-mRNA-1:cds;Parent=Msa0053210-mRNA-1
chr1_2 CDS 7626641 7626697 7626641 ID=Msa0053210-mRNA-1:cds;Parent=Msa0053210-mRNA-1
chr1_2 CDS 7625434 7625643 7625434 ID=Msa0053210-mRNA-1:cds;Parent=Msa0053210-mRNA-1
chr1_2 three_prime_UTR 7625250 7625433 7625250 ID=Msa0053210-mRNA-1:three_prime_utr;Parent=Msa0053210-mRNA-1
Gene Sequence

>Msa0053210

ATGGCAACAATATCCATACGCATGTCCCCAAAACTATTCCCTCCATCAACAAAAACCCTTTTTCCCATTCACACCAACAAATCAATCACCATTACCAACAACAGCAACAGAACAAAGCTATCGTTGCTCTGTTTAAGTTCAAGAAACGGAACAGAGTGTCCTGTTCCGTTAGAACAGCAGCCCATAAACGAGTACCAGTCGTTATCGACATCGTTCCCGTTTTCATGGGCTGCTGGTGATGTTGTTGAATACGGTTCCCGGCTTTTCGTTGTGGGCTTTTCTTTTGCCTTGCTTGTGGGGTTACCTGTGGCTTGGTTTGGAACTGTTGGGGCACAATATGAGCCTGCTAAGAGAATTGTTTGTGCTGCTTCTAGTGGTGTTTTGGCGGTTACTTTTGCGGTTGTTAGGATGTATCTTGGTTGGGCTTATGTTGGGAATCGTTTGCTCAGTGCCACTGTTGAATATGAGGAGACAGGGTGGTATGATGGCCAGATATGGGTGAAGACTGCTGAGGTTTTGGCACGTGATAGACTCTTGGGATCATTTTCTGTTAAGCCTGTACTCGGTAGATTGAAAATCACTCTAGTCGGTCTGGCAGCATGCTTGGTGACATGTGCACTTATCTTCATTAACATTGATGAAAGTTATTTAACATCGAGAGAAACCGGAGTTCGAGCAATACCTGGAGCTTACAATGATGAATCTGCAAGATCATTTGAACCAGATGCATTTTGTGGTGAGCCTGATCTTGAAGAATAG

Protein sequence

>Msa0053210

MATISIRMSPKLFPPSTKTLFPIHTNKSITITNNSNRTKLSLLCLSSRNGTECPVPLEQQPINEYQSLSTSFPFSWAAGDVVEYGSRLFVVGFSFALLVGLPVAWFGTVGAQYEPAKRIVCAASSGVLAVTFAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLGRLKITLVGLAACLVTCALIFINIDESYLTSRETGVRAIPGAYNDESARSFEPDAFCGEPDLEE*