AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1076530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076530 MtrunA17_Chr7g0260541 91.713 181 13 1 1 179 1 181 1.64e-106 302
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1076530 AT3G51510.1 66.165 133 39 2 47 179 54 180 7.04e-53 167

Find 42 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAATGCCTAGAAAGGTTT+TGG 0.235538 7_2:-75062208 None:intergenic
TTGATTCACATACTCAAATA+TGG 0.236469 7_2:-75062572 None:intergenic
TCACAACCCAAAACCTTTCT+AGG 0.258705 7_2:+75062201 Msa1076530:CDS
AAGAAGAAGTGGGTTTGTTT+TGG 0.258797 7_2:-75062392 None:intergenic
AACAAACCCACTTCTTCTTC+TGG 0.278305 7_2:+75062396 Msa1076530:CDS
ACTTGACTCTGCTGAGCCTT+TGG 0.330126 7_2:-75062295 None:intergenic
GGAGGAGGTTCTTCTGAGTC+AGG 0.395874 7_2:-75062351 None:intergenic
TTGTTCCTCAGCTTCCTTGT+TGG 0.401097 7_2:-75063261 None:intergenic
ATTTGCTCGATGAAATTGTA+AGG 0.419043 7_2:+75063442 Msa1076530:three_prime_UTR
GTGAATCAAAAGCCAGTGTT+TGG 0.428557 7_2:+75062586 Msa1076530:CDS
CTTTGTCCGCGTAAGTCATA+CGG 0.468893 7_2:+75063330 Msa1076530:three_prime_UTR
GCAAGTAAATAAACATAAAA+CGG 0.478470 7_2:-75062435 None:intergenic
CCCACTTCTTCTTCTGGACA+AGG 0.489189 7_2:+75062402 Msa1076530:CDS
ACTCAGAAGAACCTCCTCCA+TGG 0.530018 7_2:+75062355 Msa1076530:CDS
CTTCACCGGTGTTCCCACTT+CGG 0.535339 7_2:+75062660 Msa1076530:CDS
ACATAGGGGAATGCCTAGAA+AGG 0.554184 7_2:-75062214 None:intergenic
AGTTGACAGTGATGAGGAGA+AGG 0.557021 7_2:-75062151 None:intergenic
CTCAGAAGAACCTCCTCCAT+GGG 0.557982 7_2:+75062356 Msa1076530:CDS
GTCTGTTCAAGCAGCCAACA+AGG 0.565704 7_2:+75063247 Msa1076530:CDS
CGAAGTGGGAACACCGGTGA+AGG 0.578885 7_2:-75062659 None:intergenic
CAATCTACAAACACCATCCA+TGG 0.578967 7_2:+75062116 None:intergenic
GATGAAAGTAATTACCGAAG+TGG 0.584458 7_2:-75062674 None:intergenic
ATGAAAGTAATTACCGAAGT+GGG 0.587934 7_2:-75062673 None:intergenic
TTAACAGTGGCAGTGACCAA+AGG 0.589461 7_2:+75062279 Msa1076530:CDS
GAGTCAGGCTTAGCCCATGA+AGG 0.590685 7_2:-75062336 None:intergenic
CTTGAACAGACTTGAACCAC+AGG 0.591556 7_2:-75063235 None:intergenic
GTAGCAGCTACTGCCATGGA+TGG 0.596282 7_2:-75062129 None:intergenic
ATTCAATTCAGGCCTTCCTG+TGG 0.597191 7_2:+75063219 Msa1076530:intron
TCCTTGTCCAGAAGAAGAAG+TGG 0.598183 7_2:-75062403 None:intergenic
AGCTGAGGAACAAGACAAGA+GGG 0.603125 7_2:+75063271 Msa1076530:CDS
GAAGGTAGCAGCTACTGCCA+TGG 0.605058 7_2:-75062133 None:intergenic
TTTGCTCGATGAAATTGTAA+GGG 0.608182 7_2:+75063443 Msa1076530:three_prime_UTR
AGCAGCCAACAAGGAAGCTG+AGG 0.612169 7_2:+75063256 Msa1076530:CDS
CCTTGTCCAGAAGAAGAAGT+GGG 0.612408 7_2:-75062402 None:intergenic
CAATTTCCGTATGACTTACG+CGG 0.615627 7_2:-75063336 None:intergenic
GAGCTCAAAACTCCAAACAC+TGG 0.621937 7_2:-75062598 None:intergenic
AACAGACTTGAACCACAGGA+AGG 0.628717 7_2:-75063231 None:intergenic
AAGCTGAGGAACAAGACAAG+AGG 0.642384 7_2:+75063270 Msa1076530:CDS
GGCAATTGCAGTGATAGCAG+AGG 0.656195 7_2:-75062457 None:intergenic
GAGGAACAAGACAAGAGGGA+TGG 0.660419 7_2:+75063275 Msa1076530:CDS
AATTACCGAAGTGGGAACAC+CGG 0.661017 7_2:-75062665 None:intergenic
ACATACAGTTGACAGTGATG+AGG 0.672865 7_2:-75062157 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTTGAAAATATTTTA+TGG + chr7_2:75062865-75062884 Msa1076530:intron 10.0%
!!! AATAAGTTGAAAATATTTTA+TGG + chr7_2:75062865-75062884 Msa1076530:intron 10.0%
!! GCAAGTAAATAAACATAAAA+CGG - chr7_2:75062438-75062457 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - chr7_2:75062701-75062720 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + chr7_2:75062772-75062791 Msa1076530:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + chr7_2:75062833-75062852 Msa1076530:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + chr7_2:75063001-75063020 Msa1076530:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + chr7_2:75063002-75063021 Msa1076530:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - chr7_2:75063063-75063082 None:intergenic 20.0%
!! TGCAATTTCAAAAACTAATT+TGG - chr7_2:75063504-75063523 None:intergenic 20.0%
!! GCAAGTAAATAAACATAAAA+CGG - chr7_2:75062438-75062457 None:intergenic 20.0%
!! GATAACGAATAATCATAAAA+TGG - chr7_2:75062701-75062720 None:intergenic 20.0%
!! AATCAGTTTATACACTTTAT+AGG + chr7_2:75062772-75062791 Msa1076530:intron 20.0%
!!! TTTTTTCATAAGCTATTATG+CGG + chr7_2:75062833-75062852 Msa1076530:intron 20.0%
!!! ATTTGTTATGTTAGTTAACT+TGG + chr7_2:75063001-75063020 Msa1076530:intron 20.0%
!!! TTTGTTATGTTAGTTAACTT+GGG + chr7_2:75063002-75063021 Msa1076530:intron 20.0%
!! AAATAGTAGAATGAAGAATA+TGG - chr7_2:75063063-75063082 None:intergenic 20.0%
!! TGCAATTTCAAAAACTAATT+TGG - chr7_2:75063504-75063523 None:intergenic 20.0%
!! AAGAGATTAGTTATTTACAG+CGG - chr7_2:75062481-75062500 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + chr7_2:75062547-75062566 Msa1076530:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - chr7_2:75062575-75062594 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - chr7_2:75062723-75062742 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG + chr7_2:75062923-75062942 Msa1076530:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG + chr7_2:75062927-75062946 Msa1076530:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG + chr7_2:75062973-75062992 Msa1076530:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - chr7_2:75063052-75063071 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - chr7_2:75063053-75063072 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG + chr7_2:75063093-75063112 Msa1076530:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + chr7_2:75063156-75063175 Msa1076530:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + chr7_2:75063208-75063227 Msa1076530:intron 25.0%
!! AAGAGATTAGTTATTTACAG+CGG - chr7_2:75062481-75062500 None:intergenic 25.0%
! TTGAATTTGATGTTACAGAT+TGG + chr7_2:75062547-75062566 Msa1076530:intron 25.0%
! TTGATTCACATACTCAAATA+TGG - chr7_2:75062575-75062594 None:intergenic 25.0%
! ATTCAACCTTAACAAACATA+TGG - chr7_2:75062723-75062742 None:intergenic 25.0%
! ACTGCATTAATTGTTAGATA+TGG + chr7_2:75062923-75062942 Msa1076530:intron 25.0%
! CATTAATTGTTAGATATGGT+AGG + chr7_2:75062927-75062946 Msa1076530:intron 25.0%
! GTTAGAAGTTAGTTATGATT+AGG + chr7_2:75062973-75062992 Msa1076530:intron 25.0%
! TGAAGAATATGGTTCAATTA+GGG - chr7_2:75063052-75063071 None:intergenic 25.0%
! ATGAAGAATATGGTTCAATT+AGG - chr7_2:75063053-75063072 None:intergenic 25.0%
!! CTCAATTTATTTCTCTTAGT+CGG + chr7_2:75063093-75063112 Msa1076530:intron 25.0%
! ATTCATTTACACGAATTGAA+TGG + chr7_2:75063156-75063175 Msa1076530:intron 25.0%
! GAGTTAATGTTATTCAATTC+AGG + chr7_2:75063208-75063227 Msa1076530:intron 25.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - chr7_2:75062250-75062269 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - chr7_2:75062325-75062344 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + chr7_2:75062323-75062342 Msa1076530:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - chr7_2:75062676-75062695 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + chr7_2:75062714-75062733 Msa1076530:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG - chr7_2:75062966-75062985 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG + chr7_2:75062976-75062995 Msa1076530:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + chr7_2:75063442-75063461 Msa1076530:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + chr7_2:75063443-75063462 Msa1076530:three_prime_UTR 30.0%
!!! TGGTGATTTTTTGTTACTGA+GGG - chr7_2:75062250-75062269 None:intergenic 30.0%
!!! CCATGAAGGTATTTTTTCAT+CGG - chr7_2:75062325-75062344 None:intergenic 30.0%
CGATGAAAAAATACCTTCAT+GGG + chr7_2:75062323-75062342 Msa1076530:CDS 30.0%
ATGAAAGTAATTACCGAAGT+GGG - chr7_2:75062676-75062695 None:intergenic 30.0%
! CGTTATCCATATGTTTGTTA+AGG + chr7_2:75062714-75062733 Msa1076530:intron 30.0%
ACTAACTTCTAACTACCTTA+AGG - chr7_2:75062966-75062985 None:intergenic 30.0%
AGAAGTTAGTTATGATTAGG+TGG + chr7_2:75062976-75062995 Msa1076530:intron 30.0%
ATTTGCTCGATGAAATTGTA+AGG + chr7_2:75063442-75063461 Msa1076530:three_prime_UTR 30.0%
TTTGCTCGATGAAATTGTAA+GGG + chr7_2:75063443-75063462 Msa1076530:three_prime_UTR 30.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - chr7_2:75062251-75062270 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + chr7_2:75062253-75062272 Msa1076530:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + chr7_2:75062322-75062341 Msa1076530:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - chr7_2:75062394-75062413 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - chr7_2:75062395-75062414 None:intergenic 35.0%
!!! GTTTTTTATGCTCCTTTGCT+TGG + chr7_2:75062628-75062647 Msa1076530:CDS 35.0%
GATGAAAGTAATTACCGAAG+TGG - chr7_2:75062677-75062696 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + chr7_2:75062777-75062796 Msa1076530:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - chr7_2:75062911-75062930 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG + chr7_2:75062948-75062967 Msa1076530:intron 35.0%
AACTTGGGATCACTGTATAA+AGG + chr7_2:75063017-75063036 Msa1076530:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - chr7_2:75063048-75063067 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - chr7_2:75063125-75063144 None:intergenic 35.0%
!!! GTGGTGATTTTTTGTTACTG+AGG - chr7_2:75062251-75062270 None:intergenic 35.0%
GTAACAAAAAATCACCACAC+AGG + chr7_2:75062253-75062272 Msa1076530:CDS 35.0%
CCGATGAAAAAATACCTTCA+TGG + chr7_2:75062322-75062341 Msa1076530:CDS 35.0%
!! AGAAGAAGTGGGTTTGTTTT+GGG - chr7_2:75062394-75062413 None:intergenic 35.0%
!! AAGAAGAAGTGGGTTTGTTT+TGG - chr7_2:75062395-75062414 None:intergenic 35.0%
!!! GTTTTTTATGCTCCTTTGCT+TGG + chr7_2:75062628-75062647 Msa1076530:CDS 35.0%
GATGAAAGTAATTACCGAAG+TGG - chr7_2:75062677-75062696 None:intergenic 35.0%
GTTTATACACTTTATAGGCC+TGG + chr7_2:75062777-75062796 Msa1076530:intron 35.0%
AATGCAGTTTGCATGAACTA+TGG - chr7_2:75062911-75062930 None:intergenic 35.0%
! GGAGATTTGTTTAAGCCTTA+AGG + chr7_2:75062948-75062967 Msa1076530:intron 35.0%
AACTTGGGATCACTGTATAA+AGG + chr7_2:75063017-75063036 Msa1076530:intron 35.0%
GAATATGGTTCAATTAGGGT+AGG - chr7_2:75063048-75063067 None:intergenic 35.0%
ATCAACATTGTTGAGAAGCA+TGG - chr7_2:75063125-75063144 None:intergenic 35.0%
ACATACAGTTGACAGTGATG+AGG - chr7_2:75062160-75062179 None:intergenic 40.0%
!!! TTTTGGGTTGTGATGCATGT+CGG - chr7_2:75062194-75062213 None:intergenic 40.0%
TCACAACCCAAAACCTTTCT+AGG + chr7_2:75062201-75062220 Msa1076530:CDS 40.0%
! GGAATGCCTAGAAAGGTTTT+GGG - chr7_2:75062210-75062229 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + chr7_2:75062266-75062285 Msa1076530:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + chr7_2:75062396-75062415 Msa1076530:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + chr7_2:75062586-75062605 Msa1076530:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - chr7_2:75062643-75062662 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + chr7_2:75062782-75062801 Msa1076530:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + chr7_2:75062783-75062802 Msa1076530:intron 40.0%
! ATTGTTGAGAAGCATGGTTG+AGG - chr7_2:75063119-75063138 None:intergenic 40.0%
CAATTTCCGTATGACTTACG+CGG - chr7_2:75063339-75063358 None:intergenic 40.0%
ACATACAGTTGACAGTGATG+AGG - chr7_2:75062160-75062179 None:intergenic 40.0%
!!! TTTTGGGTTGTGATGCATGT+CGG - chr7_2:75062194-75062213 None:intergenic 40.0%
TCACAACCCAAAACCTTTCT+AGG + chr7_2:75062201-75062220 Msa1076530:CDS 40.0%
! GGAATGCCTAGAAAGGTTTT+GGG - chr7_2:75062210-75062229 None:intergenic 40.0%
! ACCACACAGGTTTTTAACAG+TGG + chr7_2:75062266-75062285 Msa1076530:CDS 40.0%
AACAAACCCACTTCTTCTTC+TGG + chr7_2:75062396-75062415 Msa1076530:CDS 40.0%
GTGAATCAAAAGCCAGTGTT+TGG + chr7_2:75062586-75062605 Msa1076530:CDS 40.0%
AAGGCGAAAAAACCAAGCAA+AGG - chr7_2:75062643-75062662 None:intergenic 40.0%
TACACTTTATAGGCCTGGTT+TGG + chr7_2:75062782-75062801 Msa1076530:intron 40.0%
ACACTTTATAGGCCTGGTTT+GGG + chr7_2:75062783-75062802 Msa1076530:intron 40.0%
! ATTGTTGAGAAGCATGGTTG+AGG - chr7_2:75063119-75063138 None:intergenic 40.0%
CAATTTCCGTATGACTTACG+CGG - chr7_2:75063339-75063358 None:intergenic 40.0%
AGTTGACAGTGATGAGGAGA+AGG - chr7_2:75062154-75062173 None:intergenic 45.0%
! GGGAATGCCTAGAAAGGTTT+TGG - chr7_2:75062211-75062230 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - chr7_2:75062217-75062236 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - chr7_2:75062231-75062250 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - chr7_2:75062232-75062251 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - chr7_2:75062233-75062252 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - chr7_2:75062270-75062289 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + chr7_2:75062279-75062298 Msa1076530:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - chr7_2:75062405-75062424 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - chr7_2:75062406-75062425 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - chr7_2:75062601-75062620 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + chr7_2:75062646-75062665 Msa1076530:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - chr7_2:75062668-75062687 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - chr7_2:75062798-75062817 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + chr7_2:75063219-75063238 Msa1076530:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - chr7_2:75063234-75063253 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - chr7_2:75063238-75063257 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - chr7_2:75063264-75063283 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + chr7_2:75063270-75063289 Msa1076530:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + chr7_2:75063271-75063290 Msa1076530:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - chr7_2:75063321-75063340 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + chr7_2:75063330-75063349 Msa1076530:three_prime_UTR 45.0%
AGTTGACAGTGATGAGGAGA+AGG - chr7_2:75062154-75062173 None:intergenic 45.0%
! GGGAATGCCTAGAAAGGTTT+TGG - chr7_2:75062211-75062230 None:intergenic 45.0%
ACATAGGGGAATGCCTAGAA+AGG - chr7_2:75062217-75062236 None:intergenic 45.0%
! AGGGACGTTTTCTGACATAG+GGG - chr7_2:75062231-75062250 None:intergenic 45.0%
! GAGGGACGTTTTCTGACATA+GGG - chr7_2:75062232-75062251 None:intergenic 45.0%
! TGAGGGACGTTTTCTGACAT+AGG - chr7_2:75062233-75062252 None:intergenic 45.0%
GCCACTGTTAAAAACCTGTG+TGG - chr7_2:75062270-75062289 None:intergenic 45.0%
TTAACAGTGGCAGTGACCAA+AGG + chr7_2:75062279-75062298 Msa1076530:CDS 45.0%
CCTTGTCCAGAAGAAGAAGT+GGG - chr7_2:75062405-75062424 None:intergenic 45.0%
TCCTTGTCCAGAAGAAGAAG+TGG - chr7_2:75062406-75062425 None:intergenic 45.0%
GAGCTCAAAACTCCAAACAC+TGG - chr7_2:75062601-75062620 None:intergenic 45.0%
!!! CTTGGTTTTTTCGCCTTCAC+CGG + chr7_2:75062646-75062665 Msa1076530:CDS 45.0%
AATTACCGAAGTGGGAACAC+CGG - chr7_2:75062668-75062687 None:intergenic 45.0%
TTTATCTCACCACCCAAACC+AGG - chr7_2:75062798-75062817 None:intergenic 45.0%
ATTCAATTCAGGCCTTCCTG+TGG + chr7_2:75063219-75063238 Msa1076530:intron 45.0%
AACAGACTTGAACCACAGGA+AGG - chr7_2:75063234-75063253 None:intergenic 45.0%
CTTGAACAGACTTGAACCAC+AGG - chr7_2:75063238-75063257 None:intergenic 45.0%
TTGTTCCTCAGCTTCCTTGT+TGG - chr7_2:75063264-75063283 None:intergenic 45.0%
AAGCTGAGGAACAAGACAAG+AGG + chr7_2:75063270-75063289 Msa1076530:CDS 45.0%
AGCTGAGGAACAAGACAAGA+GGG + chr7_2:75063271-75063290 Msa1076530:CDS 45.0%
CGCGGACAAAGCAACAAAAA+AGG - chr7_2:75063321-75063340 None:intergenic 45.0%
CTTTGTCCGCGTAAGTCATA+CGG + chr7_2:75063330-75063349 Msa1076530:three_prime_UTR 45.0%
ACTTGACTCTGCTGAGCCTT+TGG - chr7_2:75062298-75062317 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + chr7_2:75062355-75062374 Msa1076530:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + chr7_2:75062356-75062375 Msa1076530:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - chr7_2:75062369-75062388 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - chr7_2:75062372-75062391 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - chr7_2:75062375-75062394 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + chr7_2:75062402-75062421 Msa1076530:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - chr7_2:75062460-75062479 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + chr7_2:75062786-75062805 Msa1076530:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + chr7_2:75063247-75063266 Msa1076530:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + chr7_2:75063275-75063294 Msa1076530:CDS 50.0%
ACTTGACTCTGCTGAGCCTT+TGG - chr7_2:75062298-75062317 None:intergenic 50.0%
ACTCAGAAGAACCTCCTCCA+TGG + chr7_2:75062355-75062374 Msa1076530:CDS 50.0%
CTCAGAAGAACCTCCTCCAT+GGG + chr7_2:75062356-75062375 Msa1076530:CDS 50.0%
! TCATTTTGAGCCCATGGAGG+AGG - chr7_2:75062369-75062388 None:intergenic 50.0%
! GCTTCATTTTGAGCCCATGG+AGG - chr7_2:75062372-75062391 None:intergenic 50.0%
! TGGGCTTCATTTTGAGCCCA+TGG - chr7_2:75062375-75062394 None:intergenic 50.0%
CCCACTTCTTCTTCTGGACA+AGG + chr7_2:75062402-75062421 Msa1076530:CDS 50.0%
GGCAATTGCAGTGATAGCAG+AGG - chr7_2:75062460-75062479 None:intergenic 50.0%
!! CTTTATAGGCCTGGTTTGGG+TGG + chr7_2:75062786-75062805 Msa1076530:intron 50.0%
GTCTGTTCAAGCAGCCAACA+AGG + chr7_2:75063247-75063266 Msa1076530:CDS 50.0%
GAGGAACAAGACAAGAGGGA+TGG + chr7_2:75063275-75063294 Msa1076530:CDS 50.0%
GTAGCAGCTACTGCCATGGA+TGG - chr7_2:75062132-75062151 None:intergenic 55.0%
GAAGGTAGCAGCTACTGCCA+TGG - chr7_2:75062136-75062155 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - chr7_2:75062339-75062358 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - chr7_2:75062354-75062373 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + chr7_2:75062660-75062679 Msa1076530:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + chr7_2:75063256-75063275 Msa1076530:CDS 55.0%
GTAGCAGCTACTGCCATGGA+TGG - chr7_2:75062132-75062151 None:intergenic 55.0%
GAAGGTAGCAGCTACTGCCA+TGG - chr7_2:75062136-75062155 None:intergenic 55.0%
GAGTCAGGCTTAGCCCATGA+AGG - chr7_2:75062339-75062358 None:intergenic 55.0%
GGAGGAGGTTCTTCTGAGTC+AGG - chr7_2:75062354-75062373 None:intergenic 55.0%
CTTCACCGGTGTTCCCACTT+CGG + chr7_2:75062660-75062679 Msa1076530:CDS 55.0%
AGCAGCCAACAAGGAAGCTG+AGG + chr7_2:75063256-75063275 Msa1076530:CDS 55.0%
CGAAGTGGGAACACCGGTGA+AGG - chr7_2:75062662-75062681 None:intergenic 60.0%
CGAAGTGGGAACACCGGTGA+AGG - chr7_2:75062662-75062681 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 75062117 75063536 75062117 ID=Msa1076530;Name=Msa1076530
chr7_2 mRNA 75062117 75063536 75062117 ID=Msa1076530-mRNA-1;Parent=Msa1076530;Name=Msa1076530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|3|232|179
chr7_2 exon 75062117 75062482 75062117 ID=Msa1076530-mRNA-1:exon:17749;Parent=Msa1076530-mRNA-1
chr7_2 exon 75062565 75062681 75062565 ID=Msa1076530-mRNA-1:exon:17750;Parent=Msa1076530-mRNA-1
chr7_2 exon 75063230 75063536 75063230 ID=Msa1076530-mRNA-1:exon:17751;Parent=Msa1076530-mRNA-1
chr7_2 five_prime_UTR 75062117 75062134 75062117 ID=Msa1076530-mRNA-1:five_prime_utr;Parent=Msa1076530-mRNA-1
chr7_2 CDS 75062135 75062482 75062135 ID=Msa1076530-mRNA-1:cds;Parent=Msa1076530-mRNA-1
chr7_2 CDS 75062565 75062681 75062565 ID=Msa1076530-mRNA-1:cds;Parent=Msa1076530-mRNA-1
chr7_2 CDS 75063230 75063304 75063230 ID=Msa1076530-mRNA-1:cds;Parent=Msa1076530-mRNA-1
chr7_2 three_prime_UTR 75063305 75063536 75063305 ID=Msa1076530-mRNA-1:three_prime_utr;Parent=Msa1076530-mRNA-1
Gene Sequence

>Msa1076530

ATGGCAGTAGCTGCTACCTTCTCCTCATCACTGTCAACTGTATGTTTGTTACAAAACCGACATGCATCACAACCCAAAACCTTTCTAGGCATTCCCCTATGTCAGAAAACGTCCCTCAGTAACAAAAAATCACCACACAGGTTTTTAACAGTGGCAGTGACCAAAGGCTCAGCAGAGTCAAGTAAATCCGATGAAAAAATACCTTCATGGGCTAAGCCTGACTCAGAAGAACCTCCTCCATGGGCTCAAAATGAAGCCCAAAACAAACCCACTTCTTCTTCTGGACAAGGATTTGTTATTCCGTTTTATGTTTATTTACTTGCCTCTGCTATCACTGCAATTGCCGCTATTGGTTCCATATTTGAGTATGTGAATCAAAAGCCAGTGTTTGGAGTTTTGAGCTCTGATAGTGTTTTTTATGCTCCTTTGCTTGGTTTTTTCGCCTTCACCGGTGTTCCCACTTCGGCCTTCCTGTGGTTCAAGTCTGTTCAAGCAGCCAACAAGGAAGCTGAGGAACAAGACAAGAGGGATGGTTATTAA

Protein sequence

>Msa1076530

MAVAATFSSSLSTVCLLQNRHASQPKTFLGIPLCQKTSLSNKKSPHRFLTVAVTKGSAESSKSDEKIPSWAKPDSEEPPPWAQNEAQNKPTSSSGQGFVIPFYVYLLASAITAIAAIGSIFEYVNQKPVFGVLSSDSVFYAPLLGFFAFTGVPTSAFLWFKSVQAANKEAEEQDKRDGY*