AlfalfaGEDB | Msa0047940

M. sativa cultivar zhongmu-4 / Msa0047940

KEGG: K05359
GO: GO:0003674 GO:0003824 GO:0004664 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006558 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009094 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0017144 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0047769 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902221 GO:1902223
PFAM: PF00800.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047940	sp\|Q9SA96\|AROD1_ARATH	63.910	133	48	0	60	192	77	209	2.22e-55	182

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0047940	0.803604	3.221049e-49	-8.615850e-47
Msa0006820	Msa0047940	0.824297	8.713867e-54	-8.615850e-47
Msa0008850	Msa0047940	0.857035	2.147025e-62	-8.615850e-47
Msa0011180	Msa0047940	0.815080	1.110399e-51	-8.615850e-47
Msa0011720	Msa0047940	0.869173	3.775066e-66	-8.615850e-47
Msa0017120	Msa0047940	0.822755	1.999120e-53	-8.615850e-47
Msa0027540	Msa0047940	0.810027	1.413652e-50	-8.615850e-47
Msa0030000	Msa0047940	0.856315	3.496589e-62	-8.615850e-47
Msa0037820	Msa0047940	0.803024	4.246668e-49	-8.615850e-47
Msa0038310	Msa0047940	0.813087	3.057182e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047940	MtrunA17_Chr2g0322461	94.271	192	11	0	1	192	1	192	3.17e-132	375
Msa0047940	MtrunA17_Chr4g0074991	66.412	131	44	0	62	192	80	210	1.89e-59	190
Msa0047940	MtrunA17_Chr2g0320971	51.667	180	83	2	13	192	62	237	2.28e-55	181
Msa0047940	MtrunA17_Chr4g0027131	63.115	122	45	0	71	192	103	224	4.93e-52	172
Msa0047940	MtrunA17_Chr4g0030101	56.028	141	58	1	52	192	58	194	7.47e-49	162

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0047940	AT1G11790.2	63.910	133	48	60	192	77	209	3.47e-57	183
Msa0047940	AT1G11790.1	63.910	133	48	60	192	77	209	2.25e-56	182
Msa0047940	AT2G27820.1	65.289	121	42	72	192	104	224	1.96e-53	176
Msa0047940	AT1G08250.1	64.463	121	43	72	192	99	219	3.17e-53	175
Msa0047940	AT3G44720.1	59.504	121	49	72	192	108	228	9.02e-49	164
Msa0047940	AT5G22630.1	57.364	129	55	64	192	101	229	1.39e-48	163
Msa0047940	AT3G07630.3	59.350	123	50	70	192	80	202	2.47e-46	156
Msa0047940	AT3G07630.2	59.350	123	50	70	192	80	202	2.47e-46	156
Msa0047940	AT3G07630.1	59.350	123	50	70	192	80	202	2.47e-46	156

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Find 47 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGAGATGCCATAGCCA+TGG	0.584871	1_1:+81138510	None:intergenic
AACCACATGCATCATTATCT+TGG	0.447822	1_1:+81138393	None:intergenic
AATCAAAGTCAAGTGGGTAG+TGG	0.552304	1_1:-81138364	Msa0047940:CDS
AATGACTTAAAACACGTTTA+AGG	0.216795	1_1:+81136422	None:intergenic
ACAGGCTGTTGAGTTGTGGC+TGG	0.462106	1_1:-81136599	Msa0047940:intron
AGCCAAGATAATGATGCATG+TGG	0.723016	1_1:-81138395	Msa0047940:CDS
AGCTGCCGCAATATCAGATA+TGG	0.398548	1_1:+81136953	None:intergenic
AGTGGTGGTGATGTCTCTTA+TGG	0.365055	1_1:-81138346	Msa0047940:CDS
AGTTGAGAACTTGAGAGCCC+TGG	0.572583	1_1:+81138484	None:intergenic
ATCATTGACCTTAATCTCCA+TGG	0.536471	1_1:-81138527	Msa0047940:exon

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTGAGAAATGGAAAAA+GGG	+	chr1_1:81136429-81136448	None:intergenic	30.0%
AACTAATATGTACTCAACCA+TGG	+	chr1_1:81137031-81137050	None:intergenic	30.0%
AAGAAATAGATGACATTGAG+AGG	-	chr1_1:81137340-81137359	Msa0047940:intron	30.0%
AGAAATAGATGACATTGAGA+GGG	-	chr1_1:81137341-81137360	Msa0047940:intron	30.0%
AATACAAACTTCTCCTCATT+TGG	-	chr1_1:81137393-81137412	Msa0047940:intron	30.0%
ATACAAACTTCTCCTCATTT+GGG	-	chr1_1:81137394-81137413	Msa0047940:intron	30.0%
CTCAAAAATTGTATTGGAGA+AGG	-	chr1_1:81137421-81137440	Msa0047940:intron	30.0%
TTGGAGGGTTGAAAATATAA+GGG	+	chr1_1:81137585-81137604	None:intergenic	30.0%
TTTGGAGGGTTGAAAATATA+AGG	+	chr1_1:81137586-81137605	None:intergenic	30.0%
AGTTTCACGAATTTGAATAC+TGG	-	chr1_1:81137863-81137882	Msa0047940:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	81136417	81138639	81136417	ID=Msa0047940;Name=Msa0047940
chr1_1	mRNA	81136417	81138639	81136417	ID=Msa0047940-mRNA-1;Parent=Msa0047940;Name=Msa0047940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=109\|1\|0.75\|1\|1\|1\|4\|0\|192
chr1_1	exon	81136417	81136617	81136417	ID=Msa0047940-mRNA-1:exon:28008;Parent=Msa0047940-mRNA-1
chr1_1	exon	81136738	81136830	81136738	ID=Msa0047940-mRNA-1:exon:28007;Parent=Msa0047940-mRNA-1
chr1_1	exon	81136917	81136984	81136917	ID=Msa0047940-mRNA-1:exon:28006;Parent=Msa0047940-mRNA-1
chr1_1	exon	81138317	81138639	81138317	ID=Msa0047940-mRNA-1:exon:28005;Parent=Msa0047940-mRNA-1
chr1_1	five_prime_UTR	81138531	81138639	81138531	ID=Msa0047940-mRNA-1:five_prime_utr;Parent=Msa0047940-mRNA-1
chr1_1	CDS	81138317	81138530	81138317	ID=Msa0047940-mRNA-1:cds;Parent=Msa0047940-mRNA-1
chr1_1	CDS	81136917	81136984	81136917	ID=Msa0047940-mRNA-1:cds;Parent=Msa0047940-mRNA-1
chr1_1	CDS	81136738	81136830	81136738	ID=Msa0047940-mRNA-1:cds;Parent=Msa0047940-mRNA-1
chr1_1	CDS	81136417	81136617	81136417	ID=Msa0047940-mRNA-1:cds;Parent=Msa0047940-mRNA-1

Gene Sequence

>Msa0047940

ATGGCTATGGCATCTCTTGTTGTACCAGGGCTCTCAAGTTCTCAACTTTATAGTCAAAATCATCTGAAAAGTGCACAAAAATGGGTTTTCCTTGGTGGGTTTTCTGTTAGAAGAGCCAAGATAATGATGCATGTGGTTGATCACAATCAAAGTCAAGTGGGTAGTGGTGGTGATGTCTCTTATGGATTGCATAAAGATTTGGTATCCCTTCCAAGGCCATTATCCATATCTGATATTGCGGCAGCTTCTGATGATCTTGCCAAAGTACGAATATCATATCAGGGGATACCAGGATCATACAGCGAGGATGCTGCACTTAAAGCTTACCCTAATTGTGAAACAATCTCATGCAGTGATTTTGAAGAGGCTTTTAAGGCTGTTGAGTTGTGGCTGGCTCATAAAGTTGTCATTCCAATTGAAAATACATCTGGTGGAAGCATTCACCGGAACTATGATTTACTTCTTCGTCATAGGCTTCACATTGTTGGCGAGGTGCAGTTGGCTACTAACCTCTCCCTCCTAGCTATGCCTGGTGTCAGAAAAGAGTTCCTTAAACGTGTTTTAAGTCATTCTCAG

Protein sequence

>Msa0047940

MAMASLVVPGLSSSQLYSQNHLKSAQKWVFLGGFSVRRAKIMMHVVDHNQSQVGSGGDVSYGLHKDLVSLPRPLSISDIAAASDDLAKVRISYQGIPGSYSEDAALKAYPNCETISCSDFEEAFKAVELWLAHKVVIPIENTSGGSIHRNYDLLLRHRLHIVGEVQLATNLSLLAMPGVRKEFLKRVLSHSQ