AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278620


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278620 MtrunA17_Chr2g0291731 91.684 950 35 2 1 907 1 949 0.0 1759
Msa0278620 MtrunA17_Chr4g0043451 49.259 270 115 5 17 269 56 320 5.53e-63 216
Msa0278620 MtrunA17_Chr1g0196911 31.619 525 330 9 354 857 620 1136 2.24e-57 215
Msa0278620 MtrunA17_Chr1g0196911 25.287 261 155 5 63 286 7 264 4.64e-15 80.1
Msa0278620 MtrunA17_Chr8g0390311 26.729 535 365 12 375 898 513 1031 3.58e-40 161
Msa0278620 MtrunA17_Chr7g0214471 30.628 382 257 4 527 903 695 1073 1.24e-38 155
Msa0278620 MtrunA17_Chr7g0214471 34.796 319 171 10 22 317 161 465 2.82e-37 151
Msa0278620 MtrunA17_Chr2g0295801 21.907 493 350 15 414 894 371 840 6.58e-16 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 126 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCTGTCACTTACAAATT+TGG 0.145905 2_3:+11674685 None:intergenic
ATCTTCTTCATCTTAAAATT+TGG 0.147104 2_3:-11674963 Msa0278620:CDS
ATTATTAATGCTTGATCTTA+TGG 0.169441 2_3:-11672914 Msa0278620:intron
CACTTACAAATTTGGATTAA+TGG 0.172353 2_3:+11674693 None:intergenic
TGAATTGATTATATCAATTT+TGG 0.173331 2_3:-11673713 Msa0278620:CDS
CTTATCTTCTTCCTGATCTT+TGG 0.195909 2_3:-11675005 Msa0278620:CDS
AGAATTCAAAGAAGAAATTT+TGG 0.203469 2_3:+11675155 None:intergenic
ATACTTAGAGTGTTGGAATT+TGG 0.207564 2_3:-11673514 Msa0278620:CDS
AGATAAGTTCTAGACAAATT+TGG 0.234041 2_3:+11675021 None:intergenic
CTACGAATAAAACAAATATT+AGG 0.244149 2_3:+11670571 None:intergenic
TTGCTTGAACTCATTGTTCT+TGG 0.257256 2_3:-11673220 Msa0278620:CDS
TCAATCTCTAATCCCTTTCT+TGG 0.261025 2_3:+11674417 None:intergenic
TTATCTTCTTCCTGATCTTT+GGG 0.276447 2_3:-11675004 Msa0278620:CDS
GCAACTAAGGGCCTTTCTTC+TGG 0.279150 2_3:+11672943 None:intergenic
GCAAAAGCACTACTCTTATT+AGG 0.281694 2_3:-11672530 Msa0278620:CDS
AATCTTCTAAGCAAAATTCT+TGG 0.282998 2_3:+11672444 None:intergenic
GAAGAAGAAGAATATCCTTT+TGG 0.289161 2_3:+11675543 None:intergenic
TCTTAAGAATTTCAAAATCT+TGG 0.293921 2_3:+11673035 None:intergenic
AGGGAATAATACTAATATTA+AGG 0.295294 2_3:+11670688 None:intergenic
AGATATTCGACAAATAAAAT+TGG 0.307802 2_3:+11670872 None:intergenic
TTGAATTGCTTCACCTTGAT+AGG 0.315513 2_3:-11673156 Msa0278620:intron
ATGTAAAAGATGAAAATTTC+AGG 0.319235 2_3:-11675383 Msa0278620:CDS
ACCAACCACTGCTGTAATAA+TGG 0.339624 2_3:+11675431 None:intergenic
GTATAGTTGATTAGTTTGAT+AGG 0.339693 2_3:-11670621 Msa0278620:three_prime_UTR
TTTCTTTCAAATGAAGTTCA+TGG 0.345089 2_3:-11674922 Msa0278620:CDS
TAATAATATCACTGCAACTA+AGG 0.362173 2_3:+11672930 None:intergenic
CAAGTCTTACAACTATTTCA+TGG 0.367986 2_3:-11671641 Msa0278620:CDS
CTTCTTCATCTCAGTTCAAA+AGG 0.368201 2_3:-11675524 Msa0278620:CDS
TGTAGTCCAAGGTATCTTAG+AGG 0.373140 2_3:-11673767 Msa0278620:CDS
GACCTAAAACTTGGCCTTGA+TGG 0.374047 2_3:+11674757 None:intergenic
AACAGATACAAGGCAGTGTT+TGG 0.375753 2_3:-11674498 Msa0278620:intron
CAAAGCTTGGTTGAACTCTC+CGG 0.377724 2_3:-11673827 Msa0278620:CDS
AACAAATATTAGGTTTCTCT+TGG 0.378045 2_3:+11670581 None:intergenic
AAATATTAGGTTTCTCTTGG+TGG 0.380549 2_3:+11670584 None:intergenic
CATCAAAACCATTGAGAAGT+TGG 0.390903 2_3:+11673425 None:intergenic
AAACAATGGCTTAAAGTTAG+TGG 0.392361 2_3:-11674814 Msa0278620:CDS
CTTCTTGATGACCTAAAACT+TGG 0.393685 2_3:+11674748 None:intergenic
ACTAATCTTCGTGACCAAAC+TGG 0.401461 2_3:-11674450 Msa0278620:CDS
CAATTGTTCCCTTGCCATCA+AGG 0.425329 2_3:-11674771 Msa0278620:CDS
TTTCTTCATTTACCTTCAAA+AGG 0.429837 2_3:-11672971 Msa0278620:CDS
TGATGAGATCTTTGTGAACT+TGG 0.433660 2_3:-11675277 Msa0278620:CDS
AGATTCAAAGTTACCACAAA+TGG 0.439280 2_3:-11671592 Msa0278620:CDS
ATTCTCCTGCATAAGAGAAA+TGG 0.439551 2_3:+11672504 None:intergenic
AACAAATGCTCCCAAAGATC+AGG 0.441719 2_3:+11674994 None:intergenic
TCTTCTGACACAAGAGACTT+AGG 0.442706 2_3:+11675474 None:intergenic
CTTTCTACATATATTTGTAA+TGG 0.443549 2_3:-11675567 Msa0278620:CDS
CATTTGCAGTCCACGTCACT+AGG 0.444043 2_3:+11670947 None:intergenic
TTGGTGTCAAAATTCCAGTT+TGG 0.444139 2_3:+11674436 None:intergenic
AACAAATGATATCATCAGAA+TGG 0.448456 2_3:-11673546 Msa0278620:CDS
CGGAGAGTTCAACCAAGCTT+TGG 0.449630 2_3:+11673828 None:intergenic
CTTGATGGCAAGGGAACAAT+TGG 0.456206 2_3:+11674772 None:intergenic
GCAGTGGTTGGTATACTTAG+TGG 0.460876 2_3:-11675420 Msa0278620:CDS
TATATTTGTAATGGTCCAAA+AGG 0.463999 2_3:-11675558 Msa0278620:CDS
TTGATTAGTTTGATAGGGTA+GGG 0.466729 2_3:-11670615 Msa0278620:three_prime_UTR
GCGAATAGCGAATTCGCATT+CGG 0.466819 2_3:+11673858 None:intergenic
AGACTTGCACGTGCTAAACT+TGG 0.474905 2_3:+11671657 None:intergenic
TCCGTGTATGTTTCGATGAA+CGG 0.478931 2_3:-11670848 Msa0278620:three_prime_UTR
ACAAATGATATCATCAGAAT+GGG 0.481504 2_3:-11673545 Msa0278620:CDS
TTCGCGTCGTTACCAAAGCT+TGG 0.483538 2_3:-11673840 Msa0278620:CDS
TAAGAAGTGCATACCTATCA+AGG 0.484606 2_3:+11673143 None:intergenic
ACTTTGAATCTTCAAGTAAG+TGG 0.485354 2_3:+11671604 None:intergenic
TTGAACTCATTGTTCTTGGA+AGG 0.486845 2_3:-11673216 Msa0278620:CDS
AAGATTGAGAAAGCCATTTG+TGG 0.489915 2_3:+11671579 None:intergenic
GGAGGCCATTTCTCTTATGC+AGG 0.490703 2_3:-11672509 Msa0278620:CDS
TTATGCAGGAGAATCATTGA+TGG 0.492867 2_3:-11672495 Msa0278620:CDS
AGGAAGAAGAAGGTGAGAGT+TGG 0.494821 2_3:-11671764 Msa0278620:CDS
GTGAGTCTTTGTTTAGAGAC+GGG 0.498056 2_3:+11670992 None:intergenic
TATAGTTGATTAGTTTGATA+GGG 0.498791 2_3:-11670620 Msa0278620:three_prime_UTR
ATAGCTTCTACAGCTTCCTT+CGG 0.500255 2_3:+11673270 None:intergenic
GCCATTGATACTTAGAGTGT+TGG 0.501193 2_3:-11673521 Msa0278620:CDS
TCCAACACTCTAAGTATCAA+TGG 0.503412 2_3:+11673520 None:intergenic
ATATATGTAGAAAGTGGTTG+TGG 0.505347 2_3:+11675576 None:intergenic
TCACACTTATTGAAATGAAA+GGG 0.507241 2_3:+11670669 None:intergenic
ATAAAACCTCTAAGATACCT+TGG 0.511591 2_3:+11673761 None:intergenic
GGTATACTTAGTGGTTACAT+AGG 0.515410 2_3:-11675411 Msa0278620:CDS
AAAAGGCTCCACCAGAAGAA+AGG 0.516639 2_3:-11672954 Msa0278620:CDS
ATCACACTTATTGAAATGAA+AGG 0.520218 2_3:+11670668 None:intergenic
AAAACTTGGCCTTGATGGCA+AGG 0.520335 2_3:+11674762 None:intergenic
ACAACAATTTCCTTGCAAGA+AGG 0.522900 2_3:+11672416 None:intergenic
CTCATGAAAAGAATTGATGA+TGG 0.523426 2_3:-11673346 Msa0278620:CDS
GCATGTGTCTTGTTCAAAAG+TGG 0.526161 2_3:-11671729 Msa0278620:CDS
AATAATATCACTGCAACTAA+GGG 0.526625 2_3:+11672931 None:intergenic
GCAAGACAAGTTCTTTCACT+TGG 0.527747 2_3:-11673382 Msa0278620:CDS
AGACAAGTTCTTTCACTTGG+TGG 0.529235 2_3:-11673379 Msa0278620:CDS
GTTGATTAGTTTGATAGGGT+AGG 0.530551 2_3:-11670616 Msa0278620:three_prime_UTR
TTGATTAAGGAGGAAGAAGA+AGG 0.532233 2_3:-11671774 Msa0278620:intron
TTCTTCATCTCAGTTCAAAA+GGG 0.535117 2_3:-11675523 Msa0278620:CDS
TGCTAAACTTGGAATGCCAT+TGG 0.536248 2_3:+11671668 None:intergenic
AGTGAGTCTTTGTTTAGAGA+CGG 0.539598 2_3:+11670991 None:intergenic
TTCTTAAGAGGACTCAAAGA+TGG 0.542035 2_3:-11673021 Msa0278620:CDS
TCCATTATTACAGCAGTGGT+TGG 0.546466 2_3:-11675432 Msa0278620:CDS
AGCTTCCATTATTACAGCAG+TGG 0.546722 2_3:-11675436 Msa0278620:CDS
TGATGGAGAGATTCATGAGA+AGG 0.547332 2_3:-11673329 Msa0278620:CDS
ATGTAAAATGCTGCAACTTG+AGG 0.547343 2_3:+11673454 None:intergenic
AAAGCTTGGTTGAACTCTCC+GGG 0.547863 2_3:-11673826 Msa0278620:CDS
GCAGGAAGATAAATATCTCA+AGG 0.551167 2_3:-11672639 Msa0278620:intron
TATTACAACTATATGTTCAT+CGG 0.551263 2_3:-11673890 Msa0278620:CDS
ACTAAGGGCCTTTCTTCTGG+TGG 0.553648 2_3:+11672946 None:intergenic
TTACAAATATATGTAGAAAG+TGG 0.557362 2_3:+11675570 None:intergenic
AGATTCATTTCCTTCTTGCA+AGG 0.560069 2_3:-11672426 Msa0278620:CDS
GTCAATGCTTCTTCAATGAG+AGG 0.568971 2_3:+11673799 None:intergenic
ATATAGAGAAGAAGCTATTG+AGG 0.570152 2_3:-11672609 Msa0278620:CDS
CTCACAAATAGTTCTAGTTG+TGG 0.570468 2_3:+11673637 None:intergenic
TCATCTCAGTTCAAAAGGGT+AGG 0.576116 2_3:-11675519 Msa0278620:CDS
TAAGAGGACTCAAAGATGGA+TGG 0.576526 2_3:-11673017 Msa0278620:CDS
GGCAAGGGAACAATTGGAAG+AGG 0.578516 2_3:+11674778 None:intergenic
TGTGTCAGAAGATTCAAGAA+TGG 0.580254 2_3:-11675463 Msa0278620:CDS
TTGCTATGTATTATAAACAA+TGG 0.580498 2_3:-11674828 Msa0278620:CDS
TCGTGTTGCATTCGAGCCGA+AGG 0.583812 2_3:-11673286 Msa0278620:CDS
CTAGCAAATTCTATAGCCAA+TGG 0.590561 2_3:-11671684 Msa0278620:CDS
GGAAGGAAACAAAATTCAAG+TGG 0.595509 2_3:-11673199 Msa0278620:CDS
TCTTTATCTATCAAAACCAA+TGG 0.600134 2_3:-11673572 Msa0278620:CDS
AAAAGAAGAAAAGATTTAGG+TGG 0.603013 2_3:-11675309 Msa0278620:CDS
ACACAATCTATTGTAGTCCA+AGG 0.607717 2_3:-11673778 Msa0278620:CDS
ATTTGCAGTCCACGTCACTA+GGG 0.610710 2_3:+11670948 None:intergenic
TTCAATGATTGTAGCAACTG+TGG 0.613085 2_3:+11671552 None:intergenic
AAACTTGGCCTTGATGGCAA+GGG 0.616412 2_3:+11674763 None:intergenic
AAAGCACTACTCTTATTAGG+AGG 0.623649 2_3:-11672527 Msa0278620:CDS
TGTTTATGACTCAATTCACA+AGG 0.624575 2_3:-11672396 Msa0278620:intron
TTGAATCTTCAAGTAAGTGG+AGG 0.627778 2_3:+11671607 None:intergenic
CAGGAAGATAAATATCTCAA+GGG 0.629457 2_3:-11672638 Msa0278620:CDS
GGACTCAAAGATGGATGGAG+TGG 0.630766 2_3:-11673012 Msa0278620:CDS
TCTTCAATGAGAGGATCACC+CGG 0.650331 2_3:+11673808 None:intergenic
GAAATCTCTCCCTAGTGACG+TGG 0.654828 2_3:-11670957 Msa0278620:CDS
ACCGTTCATCGAAACATACA+CGG 0.658066 2_3:+11670847 None:intergenic
AGTCTTTGTTTAGAGACGGG+AGG 0.662000 2_3:+11670995 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAAATTTATATATGTTAA+GGG - chr2_3:11671914-11671933 Msa0278620:intron 10.0%
!!! TTTAATTATGTTAATCTTTT+TGG - chr2_3:11674859-11674878 Msa0278620:CDS 10.0%
!!! TATTATGTGCTTTAAAATTT+TGG - chr2_3:11671719-11671738 Msa0278620:CDS 15.0%
!! CTTCAAATTTATATATGTTA+AGG - chr2_3:11671913-11671932 Msa0278620:intron 15.0%
!!! TGAATTGATTATATCAATTT+TGG - chr2_3:11672537-11672556 Msa0278620:CDS 15.0%
!! TAAACATCATAACTATAAAT+AGG - chr2_3:11674327-11674346 Msa0278620:intron 15.0%
!!! TTTTTGTATATGATTGATTA+AGG - chr2_3:11674463-11674482 Msa0278620:CDS 15.0%
!!! ATTAATTTTAAGTGCTAATA+TGG + chr2_3:11674890-11674909 None:intergenic 15.0%
!! TTAAAAAAATTAGACAGATT+TGG + chr2_3:11674982-11675001 None:intergenic 15.0%
!! TTCTATACATTTAAATGATT+TGG - chr2_3:11675073-11675092 Msa0278620:CDS 15.0%
!! GAAAAAAAGTTAAACTATAT+AGG + chr2_3:11675182-11675201 None:intergenic 15.0%
!! TTACAAATATATGTAGAAAG+TGG + chr2_3:11670683-11670702 None:intergenic 20.0%
!! CTTTCTACATATATTTGTAA+TGG - chr2_3:11670683-11670702 Msa0278620:three_prime_UTR 20.0%
!! ATGTAAAAGATGAAAATTTC+AGG - chr2_3:11670867-11670886 Msa0278620:three_prime_UTR 20.0%
!! AGAAAAAGAAGAAAAGATTT+AGG - chr2_3:11670938-11670957 Msa0278620:CDS 20.0%
!!! AGAATTCAAAGAAGAAATTT+TGG + chr2_3:11671098-11671117 None:intergenic 20.0%
!! ATCTTCTTCATCTTAAAATT+TGG - chr2_3:11671287-11671306 Msa0278620:intron 20.0%
!! CAAAGTTTACAATGAAAAAA+TGG - chr2_3:11671381-11671400 Msa0278620:intron 20.0%
!! TTGCTATGTATTATAAACAA+TGG - chr2_3:11671422-11671441 Msa0278620:intron 20.0%
!! GTTTGTATATCATAAAAAGA+TGG + chr2_3:11671590-11671609 None:intergenic 20.0%
!! AAGCAAAAGAATATATTTAC+CGG - chr2_3:11671644-11671663 Msa0278620:CDS 20.0%
!! GAGATTGATAAAAAAATGTA+TGG - chr2_3:11671848-11671867 Msa0278620:intron 20.0%
!! ATAGAAATATCCTATACATA+AGG - chr2_3:11672097-11672116 Msa0278620:intron 20.0%
!! TATTACAACTATATGTTCAT+CGG - chr2_3:11672360-11672379 Msa0278620:intron 20.0%
!! TCTTAAGAATTTCAAAATCT+TGG + chr2_3:11673218-11673237 None:intergenic 20.0%
!!! AAGATTTTGAAATTCTTAAG+AGG - chr2_3:11673217-11673236 Msa0278620:CDS 20.0%
!! ATTATTAATGCTTGATCTTA+TGG - chr2_3:11673336-11673355 Msa0278620:CDS 20.0%
!! AAGTGCATATATGAAATTAT+TGG - chr2_3:11673376-11673395 Msa0278620:CDS 20.0%
!!! CCAATTTTGTTTGATAATTA+TGG + chr2_3:11673956-11673975 None:intergenic 20.0%
!! CCATAATTATCAAACAAAAT+TGG - chr2_3:11673953-11673972 Msa0278620:CDS 20.0%
!!! TTACCATTTTACAAATATCT+CGG - chr2_3:11674009-11674028 Msa0278620:intron 20.0%
!! TTGTATCTTACAAAAAATTC+AGG - chr2_3:11674767-11674786 Msa0278620:CDS 20.0%
!! AGATATTCGACAAATAAAAT+TGG + chr2_3:11675381-11675400 None:intergenic 20.0%
!! AGGGAATAATACTAATATTA+AGG + chr2_3:11675565-11675584 None:intergenic 20.0%
!!! TATAGTTGATTAGTTTGATA+GGG - chr2_3:11675630-11675649 Msa0278620:five_prime_UTR 20.0%
!! CTACGAATAAAACAAATATT+AGG + chr2_3:11675682-11675701 None:intergenic 20.0%
! ACACAATCATAAAAAACACA+TGG - chr2_3:11670628-11670647 Msa0278620:three_prime_UTR 25.0%
! TATATTTGTAATGGTCCAAA+AGG - chr2_3:11670692-11670711 Msa0278620:three_prime_UTR 25.0%
!!! AGAGAAATGCAATTCTTTTT+TGG - chr2_3:11670901-11670920 Msa0278620:CDS 25.0%
! AAAAGAAGAAAAGATTTAGG+TGG - chr2_3:11670941-11670960 Msa0278620:CDS 25.0%
!!! AGATAAGTTCTAGACAAATT+TGG + chr2_3:11671232-11671251 None:intergenic 25.0%
!!! ATTTTAAGATGAAGAAGATG+AGG + chr2_3:11671286-11671305 None:intergenic 25.0%
! TTTCTTTCAAATGAAGTTCA+TGG - chr2_3:11671328-11671347 Msa0278620:intron 25.0%
! TACAATGAAAAAATGGATAG+TGG - chr2_3:11671388-11671407 Msa0278620:intron 25.0%
! CACTTACAAATTTGGATTAA+TGG + chr2_3:11671560-11671579 None:intergenic 25.0%
!!! TTTTTTTTGCAACAGATACA+AGG - chr2_3:11671742-11671761 Msa0278620:CDS 25.0%
! ACAGATAAGTAAATCCAAAT+AGG + chr2_3:11671940-11671959 None:intergenic 25.0%
! GTATATAAGTCCTTATGTAT+AGG + chr2_3:11672110-11672129 None:intergenic 25.0%
!!! GAGCTTTATTCTTATCAATT+TGG + chr2_3:11672213-11672232 None:intergenic 25.0%
!!! AATATAGTTGACTTTTGACA+TGG + chr2_3:11672290-11672309 None:intergenic 25.0%
!! TTTTGGCAGAATTAATAACA+AGG - chr2_3:11672554-11672573 Msa0278620:CDS 25.0%
! TCTTTATCTATCAAAACCAA+TGG - chr2_3:11672678-11672697 Msa0278620:intron 25.0%
! AACAAATGATATCATCAGAA+TGG - chr2_3:11672704-11672723 Msa0278620:intron 25.0%
! ACAAATGATATCATCAGAAT+GGG - chr2_3:11672705-11672724 Msa0278620:intron 25.0%
! TTTCTTCATTTACCTTCAAA+AGG - chr2_3:11673279-11673298 Msa0278620:CDS 25.0%
! AATAATATCACTGCAACTAA+GGG + chr2_3:11673322-11673341 None:intergenic 25.0%
! TAATAATATCACTGCAACTA+AGG + chr2_3:11673323-11673342 None:intergenic 25.0%
!! TTTAGAACTCCTACATTTAT+AGG - chr2_3:11673451-11673470 Msa0278620:CDS 25.0%
! TAACATTTGCCTATAAATGT+AGG + chr2_3:11673463-11673482 None:intergenic 25.0%
! AATCTTCTAAGCAAAATTCT+TGG + chr2_3:11673809-11673828 None:intergenic 25.0%
!! TTTATTTCTTTAAGTCTACG+AGG + chr2_3:11674094-11674113 None:intergenic 25.0%
! TATTTCAATTATGTAAGTCG+AGG - chr2_3:11674146-11674165 Msa0278620:intron 25.0%
! ATTTCAATTATGTAAGTCGA+GGG - chr2_3:11674147-11674166 Msa0278620:intron 25.0%
!!! TAATTTTCGAGTGCTATAAA+GGG + chr2_3:11674434-11674453 None:intergenic 25.0%
!!! ATAATTTTCGAGTGCTATAA+AGG + chr2_3:11674435-11674454 None:intergenic 25.0%
! TTGTATATGATTGATTAAGG+AGG - chr2_3:11674466-11674485 Msa0278620:CDS 25.0%
!!! TTTTTTTCCTTGTAAGAAAG+TGG - chr2_3:11674944-11674963 Msa0278620:CDS 25.0%
! CTAGTACAAAAGTTAAAGTT+TGG + chr2_3:11675032-11675051 None:intergenic 25.0%
!! ACTTTTGTACTAGAAATTTG+TGG - chr2_3:11675039-11675058 Msa0278620:CDS 25.0%
! TCACACTTATTGAAATGAAA+GGG + chr2_3:11675584-11675603 None:intergenic 25.0%
! ATCACACTTATTGAAATGAA+AGG + chr2_3:11675585-11675604 None:intergenic 25.0%
!!! GTATAGTTGATTAGTTTGAT+AGG - chr2_3:11675629-11675648 Msa0278620:five_prime_UTR 25.0%
! AACAAATATTAGGTTTCTCT+TGG + chr2_3:11675672-11675691 None:intergenic 25.0%
ATATATGTAGAAAGTGGTTG+TGG + chr2_3:11670677-11670696 None:intergenic 30.0%
! GAAGAAGAAGAATATCCTTT+TGG + chr2_3:11670710-11670729 None:intergenic 30.0%
TTCTTCATCTCAGTTCAAAA+GGG - chr2_3:11670727-11670746 Msa0278620:three_prime_UTR 30.0%
TTATCTTCTTCCTGATCTTT+GGG - chr2_3:11671246-11671265 Msa0278620:intron 30.0%
AAACAATGGCTTAAAGTTAG+TGG - chr2_3:11671436-11671455 Msa0278620:intron 30.0%
! AAAAGTACATGTATCTTGTC+CGG + chr2_3:11671666-11671685 None:intergenic 30.0%
TTATAGATGCAGTTCAATTC+AGG - chr2_3:11671877-11671896 Msa0278620:intron 30.0%
ATATATGTTAAGGGCCTATT+TGG - chr2_3:11671923-11671942 Msa0278620:intron 30.0%
ACAACTTATAGACATGTCAT+AGG + chr2_3:11671985-11672004 None:intergenic 30.0%
! AAAGGAGACAGAAAATCTTT+TGG - chr2_3:11672175-11672194 Msa0278620:intron 30.0%
ACTGAAAATAGTCCAATCTT+TGG + chr2_3:11672237-11672256 None:intergenic 30.0%
!! ATAAAACCTCTAAGATACCT+TGG + chr2_3:11672492-11672511 None:intergenic 30.0%
!!! AAGCACTAGTCTTTTTCTTA+AGG - chr2_3:11672645-11672664 Msa0278620:intron 30.0%
!!! GATATCATTTGTTTTGCCAT+TGG + chr2_3:11672697-11672716 None:intergenic 30.0%
!! ATACTTAGAGTGTTGGAATT+TGG - chr2_3:11672736-11672755 Msa0278620:intron 30.0%
! AGTTGCAGCATTTTACATTT+TGG - chr2_3:11672801-11672820 Msa0278620:intron 30.0%
CTCATGAAAAGAATTGATGA+TGG - chr2_3:11672904-11672923 Msa0278620:intron 30.0%
!!! GTTTTGAAAAACACAACAGA+AGG - chr2_3:11673191-11673210 Msa0278620:CDS 30.0%
GGCAAATGTTAATAAGTTAG+TGG - chr2_3:11673472-11673491 Msa0278620:CDS 30.0%
! TAGTGGTTATGTTAGTTTCT+AGG - chr2_3:11673489-11673508 Msa0278620:CDS 30.0%
! AGTGGTTATGTTAGTTTCTA+GGG - chr2_3:11673490-11673509 Msa0278620:CDS 30.0%
!! TTATGTTAGTTTCTAGGGTT+CGG - chr2_3:11673495-11673514 Msa0278620:CDS 30.0%
TAAAGAGTTTCAAACATGAC+CGG + chr2_3:11673532-11673551 None:intergenic 30.0%
CAGGAAGATAAATATCTCAA+GGG - chr2_3:11673612-11673631 Msa0278620:CDS 30.0%
ATATAGAGAAGAAGCTATTG+AGG - chr2_3:11673641-11673660 Msa0278620:CDS 30.0%
!! AATTTGCTTTTGCAAAAAGC+TGG - chr2_3:11673780-11673799 Msa0278620:CDS 30.0%
TGTTTATGACTCAATTCACA+AGG - chr2_3:11673854-11673873 Msa0278620:CDS 30.0%
TCAATTCACAAGGTATGATT+TGG - chr2_3:11673864-11673883 Msa0278620:CDS 30.0%
! ACCTTGTTATCTCAAAAACA+GGG + chr2_3:11674047-11674066 None:intergenic 30.0%
! AACCTTGTTATCTCAAAAAC+AGG + chr2_3:11674048-11674067 None:intergenic 30.0%
CAAGTCTTACAACTATTTCA+TGG - chr2_3:11674609-11674628 Msa0278620:intron 30.0%
ACTTTGAATCTTCAAGTAAG+TGG + chr2_3:11674649-11674668 None:intergenic 30.0%
AGATTCAAAGTTACCACAAA+TGG - chr2_3:11674658-11674677 Msa0278620:intron 30.0%
AATCAAGAACTAATGTGACT+TGG - chr2_3:11674917-11674936 Msa0278620:CDS 30.0%
ACAAAAGTTAAAGTTTGGCA+TGG + chr2_3:11675027-11675046 None:intergenic 30.0%
! TAAATGATTTGGCATCATAG+AGG - chr2_3:11675084-11675103 Msa0278620:CDS 30.0%
AGAGGCTTTCAATAAAGATA+TGG - chr2_3:11675102-11675121 Msa0278620:CDS 30.0%
TAATATGTCATATTGCTAGC+AGG - chr2_3:11675220-11675239 Msa0278620:CDS 30.0%
!! TTGATTAGTTTGATAGGGTA+GGG - chr2_3:11675635-11675654 Msa0278620:five_prime_UTR 30.0%
AAATATTAGGTTTCTCTTGG+TGG + chr2_3:11675669-11675688 None:intergenic 30.0%
!!! GATTTTGAAGCATGAAGAAG+AGG + chr2_3:11670597-11670616 None:intergenic 35.0%
CTTCTTCATCTCAGTTCAAA+AGG - chr2_3:11670726-11670745 Msa0278620:three_prime_UTR 35.0%
TGTGTCAGAAGATTCAAGAA+TGG - chr2_3:11670787-11670806 Msa0278620:three_prime_UTR 35.0%
GGTATACTTAGTGGTTACAT+AGG - chr2_3:11670839-11670858 Msa0278620:three_prime_UTR 35.0%
TGATGAGATCTTTGTGAACT+TGG - chr2_3:11670973-11670992 Msa0278620:CDS 35.0%
CTTATCTTCTTCCTGATCTT+TGG - chr2_3:11671245-11671264 Msa0278620:intron 35.0%
! CTTCTTGATGACCTAAAACT+TGG + chr2_3:11671505-11671524 None:intergenic 35.0%
! GTTGCTGTCACTTACAAATT+TGG + chr2_3:11671568-11671587 None:intergenic 35.0%
TGCTTATATTTCGTTCCAGA+GGG + chr2_3:11671629-11671648 None:intergenic 35.0%
TTGCTTATATTTCGTTCCAG+AGG + chr2_3:11671630-11671649 None:intergenic 35.0%
!! ATTTTTGCTGCTCTTGTTTG+AGG + chr2_3:11671778-11671797 None:intergenic 35.0%
!! TTGGTGTCAAAATTCCAGTT+TGG + chr2_3:11671817-11671836 None:intergenic 35.0%
!! TGGAATTTTGACACCAAGAA+AGG - chr2_3:11671820-11671839 Msa0278620:intron 35.0%
!! GGAATTTTGACACCAAGAAA+GGG - chr2_3:11671821-11671840 Msa0278620:intron 35.0%
TCAATCTCTAATCCCTTTCT+TGG + chr2_3:11671836-11671855 None:intergenic 35.0%
! TATCTGTTTGTCAGAGCTTT+TGG - chr2_3:11671953-11671972 Msa0278620:intron 35.0%
GAATAAAGCTCACCAAAGAT+TGG - chr2_3:11672222-11672241 Msa0278620:intron 35.0%
! ACTTTTGACATGGTTTCTGT+TGG + chr2_3:11672280-11672299 None:intergenic 35.0%
ACACAATCTATTGTAGTCCA+AGG - chr2_3:11672472-11672491 Msa0278620:CDS 35.0%
!! CTCACAAATAGTTCTAGTTG+TGG + chr2_3:11672616-11672635 None:intergenic 35.0%
TCCAACACTCTAAGTATCAA+TGG + chr2_3:11672733-11672752 None:intergenic 35.0%
ATGTAAAATGCTGCAACTTG+AGG + chr2_3:11672799-11672818 None:intergenic 35.0%
! ATTTTGGACCAACTTCTCAA+TGG - chr2_3:11672817-11672836 Msa0278620:intron 35.0%
CATCAAAACCATTGAGAAGT+TGG + chr2_3:11672828-11672847 None:intergenic 35.0%
TTGCTTGAACTCATTGTTCT+TGG - chr2_3:11673030-11673049 Msa0278620:CDS 35.0%
TTGAACTCATTGTTCTTGGA+AGG - chr2_3:11673034-11673053 Msa0278620:CDS 35.0%
GGAAGGAAACAAAATTCAAG+TGG - chr2_3:11673051-11673070 Msa0278620:intron 35.0%
TTGAATTGCTTCACCTTGAT+AGG - chr2_3:11673094-11673113 Msa0278620:intron 35.0%
! TAAGAAGTGCATACCTATCA+AGG + chr2_3:11673110-11673129 None:intergenic 35.0%
TTCTTAAGAGGACTCAAAGA+TGG - chr2_3:11673229-11673248 Msa0278620:CDS 35.0%
GCAGGAAGATAAATATCTCA+AGG - chr2_3:11673611-11673630 Msa0278620:CDS 35.0%
!! GCAAAAGCACTACTCTTATT+AGG - chr2_3:11673720-11673739 Msa0278620:CDS 35.0%
! AAAGCACTACTCTTATTAGG+AGG - chr2_3:11673723-11673742 Msa0278620:CDS 35.0%
ATTCTCCTGCATAAGAGAAA+TGG + chr2_3:11673749-11673768 None:intergenic 35.0%
TTATGCAGGAGAATCATTGA+TGG - chr2_3:11673755-11673774 Msa0278620:CDS 35.0%
AGATTCATTTCCTTCTTGCA+AGG - chr2_3:11673824-11673843 Msa0278620:CDS 35.0%
ACAACAATTTCCTTGCAAGA+AGG + chr2_3:11673837-11673856 None:intergenic 35.0%
CGTCCGAGATATTTGTAAAA+TGG + chr2_3:11674015-11674034 None:intergenic 35.0%
!!! ACCCTGTTTTTGAGATAACA+AGG - chr2_3:11674043-11674062 Msa0278620:intron 35.0%
TTGATTAAGGAGGAAGAAGA+AGG - chr2_3:11674476-11674495 Msa0278620:CDS 35.0%
CTAGCAAATTCTATAGCCAA+TGG - chr2_3:11674566-11674585 Msa0278620:intron 35.0%
TTGAATCTTCAAGTAAGTGG+AGG + chr2_3:11674646-11674665 None:intergenic 35.0%
AAGATTGAGAAAGCCATTTG+TGG + chr2_3:11674674-11674693 None:intergenic 35.0%
TTCAATGATTGTAGCAACTG+TGG + chr2_3:11674701-11674720 None:intergenic 35.0%
!! CAAATTGCCACTTTCTTACA+AGG + chr2_3:11674954-11674973 None:intergenic 35.0%
TGTAAGAAAGTGGCAATTTG+AGG - chr2_3:11674954-11674973 Msa0278620:CDS 35.0%
! AGTGAGTCTTTGTTTAGAGA+CGG + chr2_3:11675262-11675281 None:intergenic 35.0%
!! GTTGATTAGTTTGATAGGGT+AGG - chr2_3:11675634-11675653 Msa0278620:five_prime_UTR 35.0%
TCATCTCAGTTCAAAAGGGT+AGG - chr2_3:11670731-11670750 Msa0278620:three_prime_UTR 40.0%
TCTTCTGACACAAGAGACTT+AGG + chr2_3:11670779-11670798 None:intergenic 40.0%
AGCTTCCATTATTACAGCAG+TGG - chr2_3:11670814-11670833 Msa0278620:three_prime_UTR 40.0%
TCCATTATTACAGCAGTGGT+TGG - chr2_3:11670818-11670837 Msa0278620:three_prime_UTR 40.0%
ACCAACCACTGCTGTAATAA+TGG + chr2_3:11670822-11670841 None:intergenic 40.0%
AACAAATGCTCCCAAAGATC+AGG + chr2_3:11671259-11671278 None:intergenic 40.0%
TGTGTATATAGTACTCCCTC+TGG - chr2_3:11671611-11671630 Msa0278620:CDS 40.0%
AACAGATACAAGGCAGTGTT+TGG - chr2_3:11671752-11671771 Msa0278620:CDS 40.0%
ACTAATCTTCGTGACCAAAC+TGG - chr2_3:11671800-11671819 Msa0278620:intron 40.0%
CTTTCTGTCACAAGTGAGAA+AGG + chr2_3:11672159-11672178 None:intergenic 40.0%
CTTTCTCACTTGTGACAGAA+AGG - chr2_3:11672157-11672176 Msa0278620:intron 40.0%
! ATTTTCAGTGCTTGTCTTGC+AGG - chr2_3:11672248-11672267 Msa0278620:intron 40.0%
GTCAATGCTTCTTCAATGAG+AGG + chr2_3:11672454-11672473 None:intergenic 40.0%
! TGTAGTCCAAGGTATCTTAG+AGG - chr2_3:11672483-11672502 Msa0278620:CDS 40.0%
GCCATTGATACTTAGAGTGT+TGG - chr2_3:11672729-11672748 Msa0278620:intron 40.0%
GCAAGACAAGTTCTTTCACT+TGG - chr2_3:11672868-11672887 Msa0278620:intron 40.0%
AGACAAGTTCTTTCACTTGG+TGG - chr2_3:11672871-11672890 Msa0278620:intron 40.0%
TGATGGAGAGATTCATGAGA+AGG - chr2_3:11672921-11672940 Msa0278620:CDS 40.0%
ATAGCTTCTACAGCTTCCTT+CGG + chr2_3:11672983-11673002 None:intergenic 40.0%
TAAGAGGACTCAAAGATGGA+TGG - chr2_3:11673233-11673252 Msa0278620:CDS 40.0%
GAGTTCTCAAGTTAAGTCTC+GGG + chr2_3:11674217-11674236 None:intergenic 40.0%
GGAGTTCTCAAGTTAAGTCT+CGG + chr2_3:11674218-11674237 None:intergenic 40.0%
AAGGTGAGAGTTGGCAAAAA+AGG - chr2_3:11674495-11674514 Msa0278620:CDS 40.0%
AGGTGAGAGTTGGCAAAAAA+GGG - chr2_3:11674496-11674515 Msa0278620:CDS 40.0%
! GCATGTGTCTTGTTCAAAAG+TGG - chr2_3:11674521-11674540 Msa0278620:intron 40.0%
TGCTAAACTTGGAATGCCAT+TGG + chr2_3:11674585-11674604 None:intergenic 40.0%
! GTGAGTCTTTGTTTAGAGAC+GGG + chr2_3:11675261-11675280 None:intergenic 40.0%
TCCGTGTATGTTTCGATGAA+CGG - chr2_3:11675402-11675421 Msa0278620:CDS 40.0%
ACCGTTCATCGAAACATACA+CGG + chr2_3:11675406-11675425 None:intergenic 40.0%
! GCAGTGGTTGGTATACTTAG+TGG - chr2_3:11670830-11670849 Msa0278620:three_prime_UTR 45.0%
! CTTGATGGCAAGGGAACAAT+TGG + chr2_3:11671481-11671500 None:intergenic 45.0%
CAATTGTTCCCTTGCCATCA+AGG - chr2_3:11671479-11671498 Msa0278620:intron 45.0%
!! AAACTTGGCCTTGATGGCAA+GGG + chr2_3:11671490-11671509 None:intergenic 45.0%
!! AAAACTTGGCCTTGATGGCA+AGG + chr2_3:11671491-11671510 None:intergenic 45.0%
! TGCCATCAAGGCCAAGTTTT+AGG - chr2_3:11671491-11671510 Msa0278620:CDS 45.0%
!! GACCTAAAACTTGGCCTTGA+TGG + chr2_3:11671496-11671515 None:intergenic 45.0%
GCGAATAGCGAATTCGCATT+CGG + chr2_3:11672395-11672414 None:intergenic 45.0%
CAAAGCTTGGTTGAACTCTC+CGG - chr2_3:11672423-11672442 Msa0278620:CDS 45.0%
AAAGCTTGGTTGAACTCTCC+GGG - chr2_3:11672424-11672443 Msa0278620:CDS 45.0%
TCTTCAATGAGAGGATCACC+CGG + chr2_3:11672445-11672464 None:intergenic 45.0%
AAAAGGCTCCACCAGAAGAA+AGG - chr2_3:11673296-11673315 Msa0278620:CDS 45.0%
CAAACATGACCGGAGGTTTA+GGG + chr2_3:11673522-11673541 None:intergenic 45.0%
TCAAACATGACCGGAGGTTT+AGG + chr2_3:11673523-11673542 None:intergenic 45.0%
AGAGTTTCAAACATGACCGG+AGG + chr2_3:11673529-11673548 None:intergenic 45.0%
TGCAATAGCAGATGTGTTGC+AGG - chr2_3:11673593-11673612 Msa0278620:CDS 45.0%
GAAAATCCTACCAAGTAGCG+AGG + chr2_3:11674239-11674258 None:intergenic 45.0%
AGGAAGAAGAAGGTGAGAGT+TGG - chr2_3:11674486-11674505 Msa0278620:CDS 45.0%
AGACTTGCACGTGCTAAACT+TGG + chr2_3:11674596-11674615 None:intergenic 45.0%
! AGTCTTTGTTTAGAGACGGG+AGG + chr2_3:11675258-11675277 None:intergenic 45.0%
ATTTGCAGTCCACGTCACTA+GGG + chr2_3:11675305-11675324 None:intergenic 45.0%
GGCAAGGGAACAATTGGAAG+AGG + chr2_3:11671475-11671494 None:intergenic 50.0%
TTCGCGTCGTTACCAAAGCT+TGG - chr2_3:11672410-11672429 Msa0278620:CDS 50.0%
CGGAGAGTTCAACCAAGCTT+TGG + chr2_3:11672425-11672444 None:intergenic 50.0%
GGACTCAAAGATGGATGGAG+TGG - chr2_3:11673238-11673257 Msa0278620:CDS 50.0%
! CTTCTGGTGGAGCCTTTTGA+AGG + chr2_3:11673294-11673313 None:intergenic 50.0%
ACTAAGGGCCTTTCTTCTGG+TGG + chr2_3:11673307-11673326 None:intergenic 50.0%
GCAACTAAGGGCCTTTCTTC+TGG + chr2_3:11673310-11673329 None:intergenic 50.0%
GGAGGCCATTTCTCTTATGC+AGG - chr2_3:11673741-11673760 Msa0278620:CDS 50.0%
CTTGAGAACTCCTCGCTACT+TGG - chr2_3:11674226-11674245 Msa0278620:intron 50.0%
AGAACTCCTCGCTACTTGGT+AGG - chr2_3:11674230-11674249 Msa0278620:intron 50.0%
GAAATCTCTCCCTAGTGACG+TGG - chr2_3:11675293-11675312 Msa0278620:CDS 50.0%
CATTTGCAGTCCACGTCACT+AGG + chr2_3:11675306-11675325 None:intergenic 50.0%
TCGTGTTGCATTCGAGCCGA+AGG - chr2_3:11672964-11672983 Msa0278620:CDS 55.0%
GGGTTCGGACCCTAAACCTC+CGG - chr2_3:11673510-11673529 Msa0278620:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 11670537 11675735 11670537 ID=Msa0278620;Name=Msa0278620
chr2_3 mRNA 11670537 11675735 11670537 ID=Msa0278620-mRNA-1;Parent=Msa0278620;Name=Msa0278620-mRNA-1;_AED=0.03;_eAED=0.03;_QI=110|0.83|0.85|1|0.83|0.71|7|363|907
chr2_3 exon 11670537 11671030 11670537 ID=Msa0278620-mRNA-1:exon:5258;Parent=Msa0278620-mRNA-1
chr2_3 exon 11671484 11671787 11671484 ID=Msa0278620-mRNA-1:exon:5257;Parent=Msa0278620-mRNA-1
chr2_3 exon 11672397 11672657 11672397 ID=Msa0278620-mRNA-1:exon:5256;Parent=Msa0278620-mRNA-1
chr2_3 exon 11672915 11673062 11672915 ID=Msa0278620-mRNA-1:exon:5255;Parent=Msa0278620-mRNA-1
chr2_3 exon 11673157 11674002 11673157 ID=Msa0278620-mRNA-1:exon:5254;Parent=Msa0278620-mRNA-1
chr2_3 exon 11674408 11674515 11674408 ID=Msa0278620-mRNA-1:exon:5253;Parent=Msa0278620-mRNA-1
chr2_3 exon 11674700 11675735 11674700 ID=Msa0278620-mRNA-1:exon:5252;Parent=Msa0278620-mRNA-1
chr2_3 five_prime_UTR 11675626 11675735 11675626 ID=Msa0278620-mRNA-1:five_prime_utr;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11674700 11675625 11674700 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11674408 11674515 11674408 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11673157 11674002 11673157 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11672915 11673062 11672915 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11672397 11672657 11672397 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11671484 11671787 11671484 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 CDS 11670900 11671030 11670900 ID=Msa0278620-mRNA-1:cds;Parent=Msa0278620-mRNA-1
chr2_3 three_prime_UTR 11670537 11670899 11670537 ID=Msa0278620-mRNA-1:three_prime_utr;Parent=Msa0278620-mRNA-1
Gene Sequence

>Msa0278620

ATGGCTTCTTCACAACAGCATAAACTTCCACAACCACTTTCTACATATATTTGTAATGGTCCAAAAGGATATTCTTCTTCTTCTTCATCTCAGTTCAAAAGGGTAGGTTCTACTTCAGAAAGATCAAATCCTAAGTCTCTTGTGTCAGAAGATTCAAGAATGGATGAAGCTTCCATTATTACAGCAGTGGTTGGTATACTTAGTGGTTACATAGGAAGATATGTAAAAGATGAAAATTTCAGGAGAATCATAAGAGAGAAATGCAATTCTTTTTTGGATAGAATAAGAACAAGAAAAAGAAGAAAAGATTTAGGTGGTGATGATGATGATGAGATCTTTGTGAACTTGGAATTTTGTATGAAGAAAATTGATAAACTGATAGAAGATCAAAGAACAAAGAAACAAGTTACAATGATGAAAAGTTTAAGAAATTCTATTGAGCTTTTAACCAAAATTTCTTCTTTGAATTCTTCTAAATCTTATCTCTCATCTTTTGCTCATCTTTACTTAGCAATAGCTTACAAGCTACACAAAAATGATAGAGTTTCTTCAAAGCATTTACTTCAAGTGTTTTGTTATTCTCCAAATTTGTCTAGAACTTATCTTCTTCCTGATCTTTGGGAGCATTTGTTTCTTCCTCATCTTCTTCATCTTAAAATTTGGTATAATAGTGAGTTTGAGTTTCTTTCAAATGAAGTTCATGGTGAGAAAGAAAAGAAAATCAAAGTTTTGAACAAAGTTTACAATGAAAAAATGGATAGTGGAACTTATCTTTTTGCTATGTATTATAAACAATGGCTTAAAGTTAGTGGTGCTAGTGAGCTTCCTCTTCCAATTGTTCCCTTGCCATCAAGGCCAAGTTTTAGGTCATCAAGAAGAATGTCTTCAGATTCTTCTATTTCAAATTCTTCCATTAATCCAAATTTATACAAGGCAGTGTTTGGCCTCAAACAAGAGCAGCAAAAATCTACTAATCTTCGTGACCAAACTGGAATTTTGACACCAAGAAAGGGATTAGAGATTGATAAAAAAATGTTCATACCAACAGAAACCATGTCAAAAGTCAACTATATTAAATCTAAGAATGCTTCTTCAAGTGTTCTTTCAAGTGACTTAGTTGAAGCTATTACAACTATATGTTCATCGGATATTCTAACCGAATGCGAATTCGCTATTCGCGTCGTTACCAAAGCTTGGTTGAACTCTCCGGGTGATCCTCTCATTGAAGAAGCATTGACACAATCTATTGTAGTCCAAGGTATCTTAGAGGTTTTATTCGTCTCGACTGAAGACGAAATTCTTGAATTGATTATATCAATTTTGGCAGAATTAATAACAAGGAATGATTCAATTAGACAAATAATACTAAATTCTGATCCACAACTAGAACTATTTGTGAGACTTTTAAGAAGCACTAGTCTTTTTCTTAAGGCTTCAGTGCTTCTTTATCTATCAAAACCAATGGCAAAACAAATGATATCATCAGAATGGGTGCCATTGATACTTAGAGTGTTGGAATTTGGAGACAAATTGCAGACACTTTTCACAGTACAATGTAGTCCTCAAGTTGCAGCATTTTACATTTTGGACCAACTTCTCAATGGTTTTGATGAAGATAAGAATTTAGAGAATGCAAGACAAGTTCTTTCACTTGGTGGATTGACACTTCTCATGAAAAGAATTGATGATGGAGAGATTCATGAGAAGGAGAATTCTGCTTCAATTATTTCGTGTTGCATTCGAGCCGAAGGAAGCTGTAGAAGCTATTTAGCTGAGAATATTAACAAGAGTTCATTGCTTGAACTCATTGTTCTTGGAAGGAAACAAAATTCAAGTGGTTATGCATTGTCTTTGCTATTTGAATTGCTTCACCTTGATAGAAGGACCAAGATTTTGAAATTCTTAAGAGGACTCAAAGATGGATGGAGTGGCTTAAACACACTGCACATTTTCTTCATTTACCTTCAAAAGGCTCCACCAGAAGAAAGGCCCTTAGTTGCAGTGATATTATTAATGCTTGATCTTATGGAAGATAAATATCTCAAGGGTAGCATATATAGAGAAGAAGCTATTGAGGCAATTGTAGCTGCTTTAAATTGTCAAATGTGTGATGATAGAGTTCAACAGCAATCAGCAAAAGCACTACTCTTATTAGGAGGCCATTTCTCTTATGCAGGAGAATCATTGATGGAAAATTTGCTTTTGCAAAAAGCTGGTTTCCAAGAATTTTGCTTAGAAGATTCATTTCCTTCTTGCAAGGAAATTGTTGTTTATGACTCAATTCACAAGGAGGAAGAAGAAGGTGAGAGTTGGCAAAAAAGGGCAGCATGTGTCTTGTTCAAAAGTGGAAATAAGAGATTGCTATCTGCACTAGCAAATTCTATAGCCAATGGCATTCCAAGTTTAGCACGTGCAAGTCTTACAACTATTTCATGGATGTGTAGCTACCTCCACTTACTTGAAGATTCAAAGTTACCACAAATGGCTTTCTCAATCTTAACGCCACAGTTGCTACAATCATTGAATTATGATAATGATGTTGAAGAAAGAGTTCTAGCTTCATATTCTTTGTTGTATCTTACAAAAAATTCAGGATGTGACTCTATCCTCCCGTCTCTAAACAAAGACTCACTCACACATCTCAGAAATCTCTCCCTAGTGACGTGGACTGCAAATGAGCTTATCTCAATATTCTCAAAAAGAAGCATGCAATCAAAACAATAA

Protein sequence

>Msa0278620

MASSQQHKLPQPLSTYICNGPKGYSSSSSSQFKRVGSTSERSNPKSLVSEDSRMDEASIITAVVGILSGYIGRYVKDENFRRIIREKCNSFLDRIRTRKRRKDLGGDDDDEIFVNLEFCMKKIDKLIEDQRTKKQVTMMKSLRNSIELLTKISSLNSSKSYLSSFAHLYLAIAYKLHKNDRVSSKHLLQVFCYSPNLSRTYLLPDLWEHLFLPHLLHLKIWYNSEFEFLSNEVHGEKEKKIKVLNKVYNEKMDSGTYLFAMYYKQWLKVSGASELPLPIVPLPSRPSFRSSRRMSSDSSISNSSINPNLYKAVFGLKQEQQKSTNLRDQTGILTPRKGLEIDKKMFIPTETMSKVNYIKSKNASSSVLSSDLVEAITTICSSDILTECEFAIRVVTKAWLNSPGDPLIEEALTQSIVVQGILEVLFVSTEDEILELIISILAELITRNDSIRQIILNSDPQLELFVRLLRSTSLFLKASVLLYLSKPMAKQMISSEWVPLILRVLEFGDKLQTLFTVQCSPQVAAFYILDQLLNGFDEDKNLENARQVLSLGGLTLLMKRIDDGEIHEKENSASIISCCIRAEGSCRSYLAENINKSSLLELIVLGRKQNSSGYALSLLFELLHLDRRTKILKFLRGLKDGWSGLNTLHIFFIYLQKAPPEERPLVAVILLMLDLMEDKYLKGSIYREEAIEAIVAALNCQMCDDRVQQQSAKALLLLGGHFSYAGESLMENLLLQKAGFQEFCLEDSFPSCKEIVVYDSIHKEEEEGESWQKRAACVLFKSGNKRLLSALANSIANGIPSLARASLTTISWMCSYLHLLEDSKLPQMAFSILTPQLLQSLNYDNDVEERVLASYSLLYLTKNSGCDSILPSLNKDSLTHLRNLSLVTWTANELISIFSKRSMQSKQ*