AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354530 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354530 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354530 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354530 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354530 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-369774 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+370715 Msa1354530:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+370420 Msa1354530:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-369787 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+370174 Msa1354530:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-370750 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-371014 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+370369 Msa1354530:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+370153 Msa1354530:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-370686 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+370514 Msa1354530:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+371139 Msa1354530:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+371099 Msa1354530:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-371182 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-370546 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-370419 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+370513 Msa1354530:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+370421 Msa1354530:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+371092 Msa1354530:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+370165 Msa1354530:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+370206 Msa1354530:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-371148 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+370662 Msa1354530:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-370506 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+371145 Msa1354530:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-370451 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+371084 Msa1354530:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-371158 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+371150 Msa1354530:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+371085 Msa1354530:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+369944 Msa1354530:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+369727 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-370452 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+371115 Msa1354530:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-370382 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-370766 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-370393 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-371103 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+370663 Msa1354530:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+370771 Msa1354530:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-370515 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+371185 Msa1354530:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-369765 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-370184 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+370678 Msa1354530:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-371141 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+370205 Msa1354530:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+371054 Msa1354530:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+370189 Msa1354530:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-371013 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-371126 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-371050 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+369969 Msa1354530:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+371146 Msa1354530:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-371096 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-370990 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-370477 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+370175 Msa1354530:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-370749 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-370663 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-371051 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-371002 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-369973 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+371017 Msa1354530:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-371118 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+371070 Msa1354530:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-370702 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-370701 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+370515 Msa1354530:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+370778 Msa1354530:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-370418 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-370995 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-370492 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+370440 Msa1354530:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-370516 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-371181 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+370685 Msa1354530:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-370457 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-371093 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+371016 Msa1354530:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+370183 Msa1354530:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-371154 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-370161 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-371070 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+370459 Msa1354530:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-371027 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+370761 Msa1354530:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-370711 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-370662 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-370693 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+370176 Msa1354530:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-371078 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+371021 Msa1354530:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+369748 Msa1354530:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-370730 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-370376 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-370511 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-370377 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-370431 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-370160 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-371180 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-369757 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-370742 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+370207 Msa1354530:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-371125 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-370724 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+369732 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-370456 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-370962 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-370778 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+371037 Msa1354530:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+370363 Msa1354530:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-370670 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-370721 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-371179 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-370777 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-370358 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+370481 Msa1354530:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+370168 Msa1354530:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-370748 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+371086 Msa1354530:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+370462 Msa1354530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:369944-369963 Msa1354530:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:369944-369963 Msa1354530:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:370068-370087 Msa1354530:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:370109-370128 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:370557-370576 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:370068-370087 Msa1354530:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:370109-370128 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:370557-370576 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:369818-369837 Msa1354530:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:370073-370092 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:370549-370568 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:370558-370577 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:371184-371203 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:369818-369837 Msa1354530:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:370073-370092 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:370549-370568 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:370558-370577 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:371184-371203 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:369777-369796 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:369782-369801 Msa1354530:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:369790-369809 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:369882-369901 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:369882-369901 Msa1354530:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:369969-369988 Msa1354530:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:369976-369995 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:369985-370004 Msa1354530:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:369999-370018 Msa1354530:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:370063-370082 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:370103-370122 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:370206-370225 Msa1354530:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:370454-370473 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:370563-370582 Msa1354530:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:370751-370770 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:370752-370771 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:370753-370772 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:370965-370984 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:371054-371073 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:371054-371073 Msa1354530:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:371070-371089 Msa1354530:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:371183-371202 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:371185-371204 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:371185-371204 Msa1354530:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:369777-369796 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:369782-369801 Msa1354530:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:369790-369809 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:369882-369901 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:369882-369901 Msa1354530:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:369969-369988 Msa1354530:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:369976-369995 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:369985-370004 Msa1354530:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:369999-370018 Msa1354530:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:370063-370082 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:370103-370122 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:370206-370225 Msa1354530:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:370454-370473 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:370563-370582 Msa1354530:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:370751-370770 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:370752-370771 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:370753-370772 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:370965-370984 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:371054-371073 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:371054-371073 Msa1354530:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:371070-371089 Msa1354530:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:371183-371202 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:371185-371204 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:371185-371204 Msa1354530:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:369768-369787 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:369835-369854 Msa1354530:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:369840-369859 Msa1354530:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:369845-369864 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:369883-369902 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:369881-369900 Msa1354530:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:369887-369906 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:369886-369905 Msa1354530:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:369887-369906 Msa1354530:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:370008-370027 Msa1354530:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:370037-370056 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:370205-370224 Msa1354530:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:370207-370226 Msa1354530:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:370288-370307 Msa1354530:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:370421-370440 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:370421-370440 Msa1354530:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:370455-370474 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:370459-370478 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:370460-370479 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:370459-370478 Msa1354530:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:370804-370823 Msa1354530:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:370914-370933 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:370915-370934 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:370914-370933 Msa1354530:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:370915-370934 Msa1354530:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:370929-370948 Msa1354530:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:371053-371072 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:371073-371092 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:371128-371147 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:371139-371158 Msa1354530:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:371182-371201 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:371201-371220 Msa1354530:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:369768-369787 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:369835-369854 Msa1354530:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:369840-369859 Msa1354530:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:369845-369864 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:369883-369902 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:369881-369900 Msa1354530:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:369887-369906 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:369886-369905 Msa1354530:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:369887-369906 Msa1354530:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:370008-370027 Msa1354530:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:370037-370056 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:370205-370224 Msa1354530:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:370207-370226 Msa1354530:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:370288-370307 Msa1354530:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:370421-370440 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:370421-370440 Msa1354530:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:370455-370474 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:370459-370478 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:370460-370479 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:370459-370478 Msa1354530:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:370804-370823 Msa1354530:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:370914-370933 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:370915-370934 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:370914-370933 Msa1354530:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:370915-370934 Msa1354530:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:370929-370948 Msa1354530:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:371053-371072 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:371073-371092 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:371128-371147 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:371139-371158 Msa1354530:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:371182-371201 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:371201-371220 Msa1354530:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:369850-369869 Msa1354530:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:369891-369910 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:369888-369907 Msa1354530:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:369889-369908 Msa1354530:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:370153-370172 Msa1354530:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:370163-370182 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:370164-370183 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:370295-370314 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:370335-370354 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:370385-370404 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:370396-370415 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:370422-370441 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:370420-370439 Msa1354530:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:370462-370481 Msa1354530:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:370495-370514 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:370727-370746 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:370745-370764 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:370780-370799 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:370821-370840 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:370818-370837 Msa1354530:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:370866-370885 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:370894-370913 Msa1354530:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:370895-370914 Msa1354530:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:370902-370921 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:371005-371024 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:371016-371035 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:371016-371035 Msa1354530:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:371081-371100 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:371129-371148 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:371144-371163 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:371146-371165 Msa1354530:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:369850-369869 Msa1354530:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:369891-369910 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:369888-369907 Msa1354530:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:369889-369908 Msa1354530:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:370153-370172 Msa1354530:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:370163-370182 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:370164-370183 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:370295-370314 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:370335-370354 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:370385-370404 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:370396-370415 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:370422-370441 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:370420-370439 Msa1354530:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:370462-370481 Msa1354530:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:370495-370514 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:370727-370746 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:370745-370764 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:370780-370799 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:370821-370840 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:370818-370837 Msa1354530:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:370866-370885 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:370894-370913 Msa1354530:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:370895-370914 Msa1354530:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:370902-370921 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:371005-371024 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:371016-371035 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:371016-371035 Msa1354530:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:371081-371100 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:371129-371148 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:371144-371163 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:371146-371165 Msa1354530:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:369760-369779 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:369892-369911 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:369896-369915 Msa1354530:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:370021-370040 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:370128-370147 Msa1354530:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:370129-370148 Msa1354530:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:370165-370184 Msa1354530:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:370168-370187 Msa1354530:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:370211-370230 Msa1354530:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:370271-370290 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:370284-370303 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:370285-370304 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:370299-370318 Msa1354530:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:370329-370348 Msa1354530:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:370334-370353 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:370334-370353 Msa1354530:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:370340-370359 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:370361-370380 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:370363-370382 Msa1354530:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:370369-370388 Msa1354530:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:370379-370398 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:370380-370399 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:370434-370453 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:370509-370528 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:370514-370533 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:370513-370532 Msa1354530:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:370514-370533 Msa1354530:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:370519-370538 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:370604-370623 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:370665-370684 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:370663-370682 Msa1354530:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:370673-370692 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:370696-370715 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:370704-370723 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:370705-370724 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:370714-370733 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:370715-370734 Msa1354530:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:370716-370735 Msa1354530:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:370761-370780 Msa1354530:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:370769-370788 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:370771-370790 Msa1354530:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:370781-370800 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:370778-370797 Msa1354530:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:370855-370874 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:370879-370898 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:370903-370922 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:370909-370928 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:371017-371036 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:371017-371036 Msa1354530:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:371030-371049 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:371121-371140 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:371145-371164 Msa1354530:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:369760-369779 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:369892-369911 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:369896-369915 Msa1354530:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:370021-370040 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:370128-370147 Msa1354530:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:370129-370148 Msa1354530:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:370165-370184 Msa1354530:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:370168-370187 Msa1354530:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:370211-370230 Msa1354530:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:370271-370290 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:370284-370303 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:370285-370304 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:370299-370318 Msa1354530:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:370329-370348 Msa1354530:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:370334-370353 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:370334-370353 Msa1354530:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:370340-370359 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:370361-370380 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:370363-370382 Msa1354530:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:370369-370388 Msa1354530:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:370379-370398 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:370380-370399 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:370434-370453 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:370509-370528 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:370514-370533 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:370513-370532 Msa1354530:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:370514-370533 Msa1354530:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:370519-370538 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:370604-370623 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:370665-370684 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:370663-370682 Msa1354530:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:370673-370692 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:370696-370715 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:370704-370723 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:370705-370724 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:370714-370733 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:370715-370734 Msa1354530:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:370716-370735 Msa1354530:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:370761-370780 Msa1354530:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:370769-370788 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:370771-370790 Msa1354530:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:370781-370800 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:370778-370797 Msa1354530:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:370855-370874 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:370879-370898 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:370903-370922 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:370909-370928 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:371017-371036 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:371017-371036 Msa1354530:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:371030-371049 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:371121-371140 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:371145-371164 Msa1354530:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:369748-369767 Msa1354530:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:369869-369888 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:369876-369895 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:369902-369921 Msa1354530:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:370130-370149 Msa1354530:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:370175-370194 Msa1354530:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:370176-370195 Msa1354530:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:370189-370208 Msa1354530:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:370210-370229 Msa1354530:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:370255-370274 Msa1354530:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:370276-370295 Msa1354530:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:370330-370349 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:370328-370347 Msa1354530:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:370518-370537 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:370515-370534 Msa1354530:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:370595-370614 Msa1354530:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:370621-370640 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:370619-370638 Msa1354530:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:370620-370639 Msa1354530:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:370662-370681 Msa1354530:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:370666-370685 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:370719-370738 Msa1354530:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:370724-370743 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:370851-370870 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:370852-370871 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:370853-370872 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:370854-370873 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:370875-370894 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:370882-370901 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:370935-370954 Msa1354530:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:370950-370969 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:370993-371012 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:371021-371040 Msa1354530:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:371037-371056 Msa1354530:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:371084-371103 Msa1354530:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:371151-371170 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:371150-371169 Msa1354530:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:369748-369767 Msa1354530:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:369869-369888 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:369876-369895 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:369902-369921 Msa1354530:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:370130-370149 Msa1354530:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:370175-370194 Msa1354530:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:370176-370195 Msa1354530:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:370189-370208 Msa1354530:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:370210-370229 Msa1354530:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:370255-370274 Msa1354530:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:370276-370295 Msa1354530:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:370330-370349 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:370328-370347 Msa1354530:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:370518-370537 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:370515-370534 Msa1354530:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:370595-370614 Msa1354530:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:370621-370640 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:370619-370638 Msa1354530:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:370620-370639 Msa1354530:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:370662-370681 Msa1354530:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:370666-370685 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:370719-370738 Msa1354530:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:370724-370743 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:370851-370870 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:370852-370871 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:370853-370872 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:370854-370873 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:370875-370894 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:370882-370901 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:370935-370954 Msa1354530:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:370950-370969 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:370993-371012 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:371021-371040 Msa1354530:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:371037-371056 Msa1354530:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:371084-371103 Msa1354530:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:371151-371170 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:371150-371169 Msa1354530:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:370145-370164 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:370146-370165 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:370147-370166 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:370174-370193 Msa1354530:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:370183-370202 Msa1354530:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:370187-370206 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:370266-370285 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:370313-370332 Msa1354530:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:370440-370459 Msa1354530:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:370480-370499 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:370481-370500 Msa1354530:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:370575-370594 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:370576-370595 Msa1354530:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:370589-370608 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:370590-370609 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:370594-370613 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:370623-370642 Msa1354530:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:370624-370643 Msa1354530:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:370632-370651 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:370678-370697 Msa1354530:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:370689-370708 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:370733-370752 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:370850-370869 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:370871-370890 Msa1354530:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:370998-371017 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:371085-371104 Msa1354530:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:371115-371134 Msa1354530:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:371169-371188 Msa1354530:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:370145-370164 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:370146-370165 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:370147-370166 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:370174-370193 Msa1354530:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:370183-370202 Msa1354530:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:370187-370206 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:370266-370285 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:370313-370332 Msa1354530:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:370440-370459 Msa1354530:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:370480-370499 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:370481-370500 Msa1354530:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:370575-370594 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:370576-370595 Msa1354530:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:370589-370608 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:370590-370609 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:370594-370613 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:370623-370642 Msa1354530:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:370624-370643 Msa1354530:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:370632-370651 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:370678-370697 Msa1354530:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:370689-370708 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:370733-370752 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:370850-370869 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:370871-370890 Msa1354530:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:370998-371017 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:371085-371104 Msa1354530:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:371115-371134 Msa1354530:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:371169-371188 Msa1354530:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:370141-370160 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:370318-370337 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:370585-370604 Msa1354530:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:370633-370652 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:370685-370704 Msa1354530:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:370833-370852 Msa1354530:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:371086-371105 Msa1354530:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:371096-371115 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:371099-371118 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:371099-371118 Msa1354530:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:370141-370160 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:370318-370337 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:370585-370604 Msa1354530:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:370633-370652 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:370685-370704 Msa1354530:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:370833-370852 Msa1354530:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:371086-371105 Msa1354530:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:371096-371115 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:371099-371118 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:371099-371118 Msa1354530:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:370837-370856 Msa1354530:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:371092-371111 Msa1354530:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:371106-371125 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:371157-371176 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:371161-371180 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:370837-370856 Msa1354530:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:371092-371111 Msa1354530:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:371106-371125 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:371157-371176 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:371161-371180 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:370840-370859 Msa1354530:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:370840-370859 Msa1354530:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 369741 371226 369741 ID=Msa1354530;Name=Msa1354530
tig0014543 mRNA 369741 371226 369741 ID=Msa1354530-mRNA-1;Parent=Msa1354530;Name=Msa1354530-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 369741 369797 369741 ID=Msa1354530-mRNA-1:exon:9129;Parent=Msa1354530-mRNA-1
tig0014543 exon 369916 369990 369916 ID=Msa1354530-mRNA-1:exon:9130;Parent=Msa1354530-mRNA-1
tig0014543 exon 370150 370228 370150 ID=Msa1354530-mRNA-1:exon:9131;Parent=Msa1354530-mRNA-1
tig0014543 exon 370350 370560 370350 ID=Msa1354530-mRNA-1:exon:9132;Parent=Msa1354530-mRNA-1
tig0014543 exon 370655 370799 370655 ID=Msa1354530-mRNA-1:exon:9133;Parent=Msa1354530-mRNA-1
tig0014543 exon 370951 371226 370951 ID=Msa1354530-mRNA-1:exon:9134;Parent=Msa1354530-mRNA-1
tig0014543 CDS 369741 369797 369741 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
tig0014543 CDS 369916 369990 369916 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
tig0014543 CDS 370150 370228 370150 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
tig0014543 CDS 370350 370560 370350 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
tig0014543 CDS 370655 370799 370655 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
tig0014543 CDS 370951 371226 370951 ID=Msa1354530-mRNA-1:cds;Parent=Msa1354530-mRNA-1
Gene Sequence

>Msa1354530

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354530

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*