AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1354400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1354400 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354400 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1354400 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1354400 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1354400 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0014543:-260558 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0014543:+261499 Msa1354400:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0014543:+261204 Msa1354400:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0014543:-260571 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0014543:+260958 Msa1354400:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0014543:-261534 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0014543:-261798 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0014543:+261153 Msa1354400:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0014543:+260937 Msa1354400:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0014543:-261470 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0014543:+261298 Msa1354400:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0014543:+261923 Msa1354400:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0014543:+261883 Msa1354400:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0014543:-261966 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0014543:-261330 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0014543:-261203 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0014543:+261297 Msa1354400:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0014543:+261205 Msa1354400:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0014543:+261876 Msa1354400:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0014543:+260949 Msa1354400:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0014543:+260990 Msa1354400:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0014543:-261932 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0014543:+261446 Msa1354400:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0014543:-261290 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0014543:+261929 Msa1354400:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0014543:-261235 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0014543:+261868 Msa1354400:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0014543:-261942 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0014543:+261934 Msa1354400:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0014543:+261869 Msa1354400:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0014543:+260728 Msa1354400:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0014543:+260511 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0014543:-261236 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0014543:+261899 Msa1354400:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0014543:-261166 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0014543:-261550 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0014543:-261177 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0014543:-261887 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0014543:+261447 Msa1354400:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0014543:+261555 Msa1354400:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0014543:-261299 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0014543:+261969 Msa1354400:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0014543:-260549 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0014543:-260968 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0014543:+261462 Msa1354400:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0014543:-261925 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0014543:+260989 Msa1354400:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0014543:+261838 Msa1354400:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0014543:+260973 Msa1354400:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0014543:-261797 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0014543:-261910 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0014543:-261834 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0014543:+260753 Msa1354400:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0014543:+261930 Msa1354400:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0014543:-261880 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0014543:-261774 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0014543:-261261 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0014543:+260959 Msa1354400:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0014543:-261533 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0014543:-261447 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0014543:-261835 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0014543:-261786 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0014543:-260757 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0014543:+261801 Msa1354400:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0014543:-261902 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0014543:+261854 Msa1354400:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0014543:-261486 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0014543:-261485 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0014543:+261299 Msa1354400:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0014543:+261562 Msa1354400:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0014543:-261202 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0014543:-261779 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0014543:-261276 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0014543:+261224 Msa1354400:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0014543:-261300 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0014543:-261965 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0014543:+261469 Msa1354400:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0014543:-261241 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0014543:-261877 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0014543:+261800 Msa1354400:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0014543:+260967 Msa1354400:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0014543:-261938 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0014543:-260945 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0014543:-261854 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0014543:+261243 Msa1354400:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0014543:-261811 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0014543:+261545 Msa1354400:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0014543:-261495 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0014543:-261446 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0014543:-261477 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0014543:+260960 Msa1354400:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0014543:-261862 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0014543:+261805 Msa1354400:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0014543:+260532 Msa1354400:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0014543:-261514 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0014543:-261160 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0014543:-261295 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0014543:-261161 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0014543:-261215 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0014543:-260944 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0014543:-261964 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0014543:-260541 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0014543:-261526 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0014543:+260991 Msa1354400:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0014543:-261909 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0014543:-261508 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0014543:+260516 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0014543:-261240 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0014543:-261746 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0014543:-261562 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0014543:+261821 Msa1354400:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0014543:+261147 Msa1354400:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0014543:-261454 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0014543:-261505 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0014543:-261963 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0014543:-261561 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0014543:-261142 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0014543:+261265 Msa1354400:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0014543:+260952 Msa1354400:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0014543:-261532 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0014543:+261870 Msa1354400:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0014543:+261246 Msa1354400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:260728-260747 Msa1354400:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0014543:260728-260747 Msa1354400:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:260852-260871 Msa1354400:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:260893-260912 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:261341-261360 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0014543:260852-260871 Msa1354400:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0014543:260893-260912 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0014543:261341-261360 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:260602-260621 Msa1354400:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:260857-260876 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:261333-261352 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:261342-261361 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:261968-261987 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0014543:260602-260621 Msa1354400:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0014543:260857-260876 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0014543:261333-261352 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0014543:261342-261361 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0014543:261968-261987 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:260561-260580 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:260566-260585 Msa1354400:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:260574-260593 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:260666-260685 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:260666-260685 Msa1354400:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:260753-260772 Msa1354400:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:260760-260779 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:260769-260788 Msa1354400:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:260783-260802 Msa1354400:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:260847-260866 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:260887-260906 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:260990-261009 Msa1354400:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:261238-261257 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:261347-261366 Msa1354400:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:261535-261554 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:261536-261555 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:261537-261556 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:261749-261768 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:261838-261857 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:261838-261857 Msa1354400:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:261854-261873 Msa1354400:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:261967-261986 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:261969-261988 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:261969-261988 Msa1354400:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0014543:260561-260580 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0014543:260566-260585 Msa1354400:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0014543:260574-260593 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0014543:260666-260685 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0014543:260666-260685 Msa1354400:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0014543:260753-260772 Msa1354400:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0014543:260760-260779 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0014543:260769-260788 Msa1354400:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0014543:260783-260802 Msa1354400:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0014543:260847-260866 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0014543:260887-260906 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0014543:260990-261009 Msa1354400:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0014543:261238-261257 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0014543:261347-261366 Msa1354400:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0014543:261535-261554 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0014543:261536-261555 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0014543:261537-261556 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0014543:261749-261768 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0014543:261838-261857 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0014543:261838-261857 Msa1354400:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0014543:261854-261873 Msa1354400:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0014543:261967-261986 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0014543:261969-261988 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0014543:261969-261988 Msa1354400:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:260552-260571 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:260619-260638 Msa1354400:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:260624-260643 Msa1354400:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:260629-260648 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:260667-260686 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:260665-260684 Msa1354400:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:260671-260690 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:260670-260689 Msa1354400:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:260671-260690 Msa1354400:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:260792-260811 Msa1354400:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:260821-260840 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:260989-261008 Msa1354400:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:260991-261010 Msa1354400:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:261072-261091 Msa1354400:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:261205-261224 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:261205-261224 Msa1354400:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:261239-261258 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:261243-261262 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:261244-261263 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:261243-261262 Msa1354400:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:261588-261607 Msa1354400:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:261698-261717 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:261699-261718 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:261698-261717 Msa1354400:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:261699-261718 Msa1354400:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:261713-261732 Msa1354400:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:261837-261856 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:261857-261876 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:261912-261931 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:261923-261942 Msa1354400:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:261966-261985 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:261985-262004 Msa1354400:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0014543:260552-260571 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0014543:260619-260638 Msa1354400:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0014543:260624-260643 Msa1354400:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0014543:260629-260648 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0014543:260667-260686 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0014543:260665-260684 Msa1354400:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0014543:260671-260690 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0014543:260670-260689 Msa1354400:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0014543:260671-260690 Msa1354400:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0014543:260792-260811 Msa1354400:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0014543:260821-260840 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0014543:260989-261008 Msa1354400:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0014543:260991-261010 Msa1354400:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0014543:261072-261091 Msa1354400:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0014543:261205-261224 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0014543:261205-261224 Msa1354400:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0014543:261239-261258 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0014543:261243-261262 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0014543:261244-261263 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0014543:261243-261262 Msa1354400:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0014543:261588-261607 Msa1354400:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0014543:261698-261717 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0014543:261699-261718 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0014543:261698-261717 Msa1354400:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0014543:261699-261718 Msa1354400:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0014543:261713-261732 Msa1354400:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0014543:261837-261856 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0014543:261857-261876 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0014543:261912-261931 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0014543:261923-261942 Msa1354400:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0014543:261966-261985 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0014543:261985-262004 Msa1354400:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:260634-260653 Msa1354400:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:260675-260694 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:260672-260691 Msa1354400:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:260673-260692 Msa1354400:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:260937-260956 Msa1354400:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:260947-260966 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:260948-260967 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:261079-261098 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:261119-261138 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:261169-261188 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:261180-261199 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:261206-261225 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:261204-261223 Msa1354400:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:261246-261265 Msa1354400:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:261279-261298 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:261511-261530 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:261529-261548 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:261564-261583 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:261605-261624 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:261602-261621 Msa1354400:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:261650-261669 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:261678-261697 Msa1354400:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:261679-261698 Msa1354400:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:261686-261705 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:261789-261808 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:261800-261819 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:261800-261819 Msa1354400:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:261865-261884 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:261913-261932 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:261928-261947 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:261930-261949 Msa1354400:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0014543:260634-260653 Msa1354400:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0014543:260675-260694 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0014543:260672-260691 Msa1354400:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0014543:260673-260692 Msa1354400:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0014543:260937-260956 Msa1354400:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0014543:260947-260966 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0014543:260948-260967 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0014543:261079-261098 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0014543:261119-261138 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0014543:261169-261188 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0014543:261180-261199 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0014543:261206-261225 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0014543:261204-261223 Msa1354400:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0014543:261246-261265 Msa1354400:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0014543:261279-261298 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0014543:261511-261530 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0014543:261529-261548 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0014543:261564-261583 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0014543:261605-261624 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0014543:261602-261621 Msa1354400:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0014543:261650-261669 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0014543:261678-261697 Msa1354400:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0014543:261679-261698 Msa1354400:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0014543:261686-261705 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0014543:261789-261808 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0014543:261800-261819 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0014543:261800-261819 Msa1354400:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0014543:261865-261884 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0014543:261913-261932 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0014543:261928-261947 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0014543:261930-261949 Msa1354400:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:260544-260563 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:260676-260695 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:260680-260699 Msa1354400:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:260805-260824 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:260912-260931 Msa1354400:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:260913-260932 Msa1354400:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:260949-260968 Msa1354400:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:260952-260971 Msa1354400:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:260995-261014 Msa1354400:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:261055-261074 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:261068-261087 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:261069-261088 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:261083-261102 Msa1354400:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:261113-261132 Msa1354400:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:261118-261137 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:261118-261137 Msa1354400:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:261124-261143 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:261145-261164 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:261147-261166 Msa1354400:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:261153-261172 Msa1354400:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:261163-261182 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:261164-261183 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:261218-261237 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:261293-261312 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:261298-261317 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:261297-261316 Msa1354400:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:261298-261317 Msa1354400:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:261303-261322 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:261388-261407 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:261449-261468 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:261447-261466 Msa1354400:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:261457-261476 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:261480-261499 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:261488-261507 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:261489-261508 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:261498-261517 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:261499-261518 Msa1354400:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:261500-261519 Msa1354400:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:261545-261564 Msa1354400:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:261553-261572 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:261555-261574 Msa1354400:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:261565-261584 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:261562-261581 Msa1354400:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:261639-261658 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:261663-261682 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:261687-261706 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:261693-261712 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:261801-261820 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:261801-261820 Msa1354400:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:261814-261833 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:261905-261924 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:261929-261948 Msa1354400:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0014543:260544-260563 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0014543:260676-260695 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0014543:260680-260699 Msa1354400:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0014543:260805-260824 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0014543:260912-260931 Msa1354400:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0014543:260913-260932 Msa1354400:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0014543:260949-260968 Msa1354400:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0014543:260952-260971 Msa1354400:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0014543:260995-261014 Msa1354400:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0014543:261055-261074 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0014543:261068-261087 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0014543:261069-261088 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0014543:261083-261102 Msa1354400:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0014543:261113-261132 Msa1354400:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0014543:261118-261137 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0014543:261118-261137 Msa1354400:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0014543:261124-261143 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0014543:261145-261164 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0014543:261147-261166 Msa1354400:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0014543:261153-261172 Msa1354400:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0014543:261163-261182 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0014543:261164-261183 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0014543:261218-261237 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0014543:261293-261312 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0014543:261298-261317 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0014543:261297-261316 Msa1354400:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0014543:261298-261317 Msa1354400:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0014543:261303-261322 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0014543:261388-261407 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0014543:261449-261468 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0014543:261447-261466 Msa1354400:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0014543:261457-261476 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0014543:261480-261499 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0014543:261488-261507 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0014543:261489-261508 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0014543:261498-261517 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0014543:261499-261518 Msa1354400:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0014543:261500-261519 Msa1354400:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0014543:261545-261564 Msa1354400:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0014543:261553-261572 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0014543:261555-261574 Msa1354400:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0014543:261565-261584 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0014543:261562-261581 Msa1354400:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0014543:261639-261658 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0014543:261663-261682 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0014543:261687-261706 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0014543:261693-261712 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0014543:261801-261820 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0014543:261801-261820 Msa1354400:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0014543:261814-261833 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0014543:261905-261924 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0014543:261929-261948 Msa1354400:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:260532-260551 Msa1354400:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:260653-260672 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:260660-260679 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:260686-260705 Msa1354400:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:260914-260933 Msa1354400:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:260959-260978 Msa1354400:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:260960-260979 Msa1354400:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:260973-260992 Msa1354400:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:260994-261013 Msa1354400:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:261039-261058 Msa1354400:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:261060-261079 Msa1354400:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:261114-261133 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:261112-261131 Msa1354400:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:261302-261321 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:261299-261318 Msa1354400:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:261379-261398 Msa1354400:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:261405-261424 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:261403-261422 Msa1354400:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:261404-261423 Msa1354400:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:261446-261465 Msa1354400:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:261450-261469 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:261503-261522 Msa1354400:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:261508-261527 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:261635-261654 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:261636-261655 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:261637-261656 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:261638-261657 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:261659-261678 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:261666-261685 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:261719-261738 Msa1354400:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:261734-261753 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:261777-261796 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:261805-261824 Msa1354400:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:261821-261840 Msa1354400:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:261868-261887 Msa1354400:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:261935-261954 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:261934-261953 Msa1354400:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0014543:260532-260551 Msa1354400:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0014543:260653-260672 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0014543:260660-260679 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0014543:260686-260705 Msa1354400:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0014543:260914-260933 Msa1354400:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0014543:260959-260978 Msa1354400:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0014543:260960-260979 Msa1354400:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0014543:260973-260992 Msa1354400:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0014543:260994-261013 Msa1354400:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0014543:261039-261058 Msa1354400:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0014543:261060-261079 Msa1354400:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0014543:261114-261133 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0014543:261112-261131 Msa1354400:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0014543:261302-261321 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0014543:261299-261318 Msa1354400:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0014543:261379-261398 Msa1354400:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0014543:261405-261424 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0014543:261403-261422 Msa1354400:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0014543:261404-261423 Msa1354400:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0014543:261446-261465 Msa1354400:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0014543:261450-261469 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0014543:261503-261522 Msa1354400:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0014543:261508-261527 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0014543:261635-261654 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0014543:261636-261655 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0014543:261637-261656 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0014543:261638-261657 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0014543:261659-261678 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0014543:261666-261685 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0014543:261719-261738 Msa1354400:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0014543:261734-261753 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0014543:261777-261796 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0014543:261805-261824 Msa1354400:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0014543:261821-261840 Msa1354400:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0014543:261868-261887 Msa1354400:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0014543:261935-261954 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0014543:261934-261953 Msa1354400:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:260929-260948 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:260930-260949 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:260931-260950 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:260958-260977 Msa1354400:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:260967-260986 Msa1354400:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:260971-260990 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:261050-261069 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:261097-261116 Msa1354400:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:261224-261243 Msa1354400:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:261264-261283 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:261265-261284 Msa1354400:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:261359-261378 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:261360-261379 Msa1354400:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:261373-261392 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:261374-261393 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:261378-261397 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:261407-261426 Msa1354400:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:261408-261427 Msa1354400:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:261416-261435 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:261462-261481 Msa1354400:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:261473-261492 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:261517-261536 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:261634-261653 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:261655-261674 Msa1354400:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:261782-261801 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:261869-261888 Msa1354400:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:261899-261918 Msa1354400:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:261953-261972 Msa1354400:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0014543:260929-260948 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0014543:260930-260949 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0014543:260931-260950 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0014543:260958-260977 Msa1354400:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0014543:260967-260986 Msa1354400:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0014543:260971-260990 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0014543:261050-261069 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0014543:261097-261116 Msa1354400:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0014543:261224-261243 Msa1354400:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0014543:261264-261283 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0014543:261265-261284 Msa1354400:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0014543:261359-261378 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0014543:261360-261379 Msa1354400:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0014543:261373-261392 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0014543:261374-261393 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0014543:261378-261397 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0014543:261407-261426 Msa1354400:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0014543:261408-261427 Msa1354400:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0014543:261416-261435 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0014543:261462-261481 Msa1354400:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0014543:261473-261492 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0014543:261517-261536 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0014543:261634-261653 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0014543:261655-261674 Msa1354400:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0014543:261782-261801 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0014543:261869-261888 Msa1354400:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0014543:261899-261918 Msa1354400:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0014543:261953-261972 Msa1354400:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:260925-260944 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:261102-261121 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:261369-261388 Msa1354400:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:261417-261436 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:261469-261488 Msa1354400:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:261617-261636 Msa1354400:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:261870-261889 Msa1354400:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:261880-261899 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:261883-261902 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:261883-261902 Msa1354400:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0014543:260925-260944 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0014543:261102-261121 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0014543:261369-261388 Msa1354400:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0014543:261417-261436 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0014543:261469-261488 Msa1354400:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0014543:261617-261636 Msa1354400:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0014543:261870-261889 Msa1354400:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0014543:261880-261899 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0014543:261883-261902 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0014543:261883-261902 Msa1354400:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:261621-261640 Msa1354400:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:261876-261895 Msa1354400:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:261890-261909 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:261941-261960 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:261945-261964 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0014543:261621-261640 Msa1354400:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0014543:261876-261895 Msa1354400:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0014543:261890-261909 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0014543:261941-261960 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0014543:261945-261964 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:261624-261643 Msa1354400:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0014543:261624-261643 Msa1354400:intron 80.0%
Chromosome Type Strat End Strand Name
tig0014543 gene 260525 262010 260525 ID=Msa1354400;Name=Msa1354400
tig0014543 mRNA 260525 262010 260525 ID=Msa1354400-mRNA-1;Parent=Msa1354400;Name=Msa1354400-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0014543 exon 260525 260581 260525 ID=Msa1354400-mRNA-1:exon:9105;Parent=Msa1354400-mRNA-1
tig0014543 exon 260700 260774 260700 ID=Msa1354400-mRNA-1:exon:9106;Parent=Msa1354400-mRNA-1
tig0014543 exon 260934 261012 260934 ID=Msa1354400-mRNA-1:exon:9107;Parent=Msa1354400-mRNA-1
tig0014543 exon 261134 261344 261134 ID=Msa1354400-mRNA-1:exon:9108;Parent=Msa1354400-mRNA-1
tig0014543 exon 261439 261583 261439 ID=Msa1354400-mRNA-1:exon:9109;Parent=Msa1354400-mRNA-1
tig0014543 exon 261735 262010 261735 ID=Msa1354400-mRNA-1:exon:9110;Parent=Msa1354400-mRNA-1
tig0014543 CDS 260525 260581 260525 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
tig0014543 CDS 260700 260774 260700 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
tig0014543 CDS 260934 261012 260934 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
tig0014543 CDS 261134 261344 261134 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
tig0014543 CDS 261439 261583 261439 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
tig0014543 CDS 261735 262010 261735 ID=Msa1354400-mRNA-1:cds;Parent=Msa1354400-mRNA-1
Gene Sequence

>Msa1354400

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1354400

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*