AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1365990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1365990 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1365990 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1365990 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1365990 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1365990 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0018442:+59748 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0018442:-58807 Msa1365990:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0018442:-59102 Msa1365990:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0018442:+59735 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0018442:-59348 Msa1365990:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0018442:+58772 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0018442:+58508 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0018442:-59153 Msa1365990:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0018442:-59369 Msa1365990:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0018442:+58836 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0018442:-59008 Msa1365990:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0018442:-58383 Msa1365990:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0018442:-58423 Msa1365990:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0018442:+58340 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0018442:+58976 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0018442:+59103 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0018442:-59009 Msa1365990:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0018442:-59101 Msa1365990:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0018442:-58430 Msa1365990:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0018442:-59357 Msa1365990:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0018442:-59316 Msa1365990:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0018442:+58374 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0018442:-58860 Msa1365990:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0018442:+59016 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0018442:-58377 Msa1365990:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0018442:+59071 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0018442:-58438 Msa1365990:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0018442:+58364 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0018442:-58372 Msa1365990:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0018442:-58437 Msa1365990:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0018442:-59578 Msa1365990:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0018442:-59795 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0018442:+59070 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0018442:-58407 Msa1365990:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0018442:+59140 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0018442:+58756 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0018442:+59129 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0018442:+58419 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0018442:-58859 Msa1365990:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0018442:-58751 Msa1365990:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0018442:+59007 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0018442:-58337 Msa1365990:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0018442:+59757 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0018442:+59338 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0018442:-58844 Msa1365990:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0018442:+58381 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0018442:-59317 Msa1365990:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0018442:-58468 Msa1365990:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0018442:-59333 Msa1365990:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0018442:+58509 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0018442:+58396 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0018442:+58472 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0018442:-59553 Msa1365990:intron
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0018442:-58376 Msa1365990:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0018442:+58426 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0018442:+58532 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0018442:+59045 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0018442:-59347 Msa1365990:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0018442:+58773 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0018442:+58859 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0018442:+58471 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0018442:+58520 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0018442:+59549 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0018442:-58505 Msa1365990:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0018442:+58404 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0018442:-58452 Msa1365990:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0018442:+58820 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0018442:+58821 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0018442:-59007 Msa1365990:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0018442:-58744 Msa1365990:intron
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0018442:+59104 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0018442:+58527 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0018442:+59030 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0018442:-59082 Msa1365990:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0018442:+59006 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0018442:+58341 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0018442:-58837 Msa1365990:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0018442:+59065 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0018442:+58429 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0018442:-58506 Msa1365990:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0018442:-59339 Msa1365990:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0018442:+58368 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0018442:+59361 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0018442:+58452 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0018442:-59063 Msa1365990:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0018442:+58495 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0018442:-58761 Msa1365990:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0018442:+58811 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0018442:+58860 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0018442:+58829 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0018442:-59346 Msa1365990:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0018442:+58444 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0018442:-58501 Msa1365990:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0018442:-59774 Msa1365990:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0018442:+58792 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0018442:+59146 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0018442:+59011 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0018442:+59145 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0018442:+59091 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0018442:+59362 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0018442:+58342 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0018442:+59765 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0018442:+58780 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0018442:-59315 Msa1365990:intron
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0018442:+58397 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0018442:+58798 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0018442:-59790 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0018442:+59066 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0018442:+58560 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0018442:+58744 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0018442:-58485 Msa1365990:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0018442:-59159 Msa1365990:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0018442:+58852 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0018442:+58801 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0018442:+58343 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0018442:+58745 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0018442:+59164 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0018442:-59041 Msa1365990:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0018442:-59354 Msa1365990:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0018442:+58774 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0018442:-58436 Msa1365990:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0018442:-59060 Msa1365990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG - tig0018442:58521-58540 Msa1365990:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG - tig0018442:58521-58540 Msa1365990:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018442:58645-58664 Msa1365990:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018442:58686-58705 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018442:59134-59153 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG - tig0018442:58645-58664 Msa1365990:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG + tig0018442:58686-58705 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG + tig0018442:59134-59153 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018442:58395-58414 Msa1365990:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018442:58650-58669 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018442:59126-59145 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018442:59135-59154 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018442:59761-59780 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG - tig0018442:58395-58414 Msa1365990:CDS 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG + tig0018442:58650-58669 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG + tig0018442:59126-59145 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG + tig0018442:59135-59154 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG + tig0018442:59761-59780 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018442:58354-58373 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018442:58359-58378 Msa1365990:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018442:58367-58386 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018442:58459-58478 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018442:58459-58478 Msa1365990:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018442:58546-58565 Msa1365990:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018442:58553-58572 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018442:58562-58581 Msa1365990:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018442:58576-58595 Msa1365990:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018442:58640-58659 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018442:58680-58699 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018442:58783-58802 Msa1365990:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018442:59031-59050 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018442:59140-59159 Msa1365990:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018442:59328-59347 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018442:59329-59348 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018442:59330-59349 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018442:59542-59561 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018442:59631-59650 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018442:59631-59650 Msa1365990:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018442:59647-59666 Msa1365990:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018442:59760-59779 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018442:59762-59781 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018442:59762-59781 Msa1365990:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG + tig0018442:58354-58373 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG - tig0018442:58359-58378 Msa1365990:CDS 40.0%
TCATGCCTTTACTTCGTTCA+TGG + tig0018442:58367-58386 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG + tig0018442:58459-58478 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG - tig0018442:58459-58478 Msa1365990:CDS 40.0%
ATTGCCTGATCGAATTGATC+AGG - tig0018442:58546-58565 Msa1365990:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG + tig0018442:58553-58572 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG - tig0018442:58562-58581 Msa1365990:CDS 40.0%
AGAACAAGGTTCAAGTCTAC+CGG - tig0018442:58576-58595 Msa1365990:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG + tig0018442:58640-58659 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG + tig0018442:58680-58699 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG - tig0018442:58783-58802 Msa1365990:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG + tig0018442:59031-59050 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG - tig0018442:59140-59159 Msa1365990:CDS 40.0%
TCAGGTAGACAGTTTCTATG+GGG + tig0018442:59328-59347 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG + tig0018442:59329-59348 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG + tig0018442:59330-59349 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG + tig0018442:59542-59561 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG + tig0018442:59631-59650 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG - tig0018442:59631-59650 Msa1365990:intron 40.0%
CCTTAGGACCGTTATAGTTA+CGG - tig0018442:59647-59666 Msa1365990:intron 40.0%
AAGTCGTAAGACCATGTATG+GGG + tig0018442:59760-59779 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG + tig0018442:59762-59781 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG - tig0018442:59762-59781 Msa1365990:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018442:58345-58364 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018442:58412-58431 Msa1365990:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018442:58417-58436 Msa1365990:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018442:58422-58441 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018442:58460-58479 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018442:58458-58477 Msa1365990:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018442:58464-58483 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018442:58463-58482 Msa1365990:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018442:58464-58483 Msa1365990:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018442:58585-58604 Msa1365990:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018442:58614-58633 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018442:58782-58801 Msa1365990:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018442:58784-58803 Msa1365990:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018442:58865-58884 Msa1365990:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018442:58998-59017 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018442:58998-59017 Msa1365990:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018442:59032-59051 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018442:59036-59055 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018442:59037-59056 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018442:59036-59055 Msa1365990:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018442:59381-59400 Msa1365990:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018442:59491-59510 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018442:59492-59511 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018442:59491-59510 Msa1365990:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018442:59492-59511 Msa1365990:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018442:59506-59525 Msa1365990:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018442:59630-59649 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018442:59650-59669 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018442:59705-59724 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018442:59716-59735 Msa1365990:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018442:59759-59778 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018442:59778-59797 Msa1365990:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG + tig0018442:58345-58364 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG - tig0018442:58412-58431 Msa1365990:CDS 45.0%
GTCCTAATTCTTGACTGGAG+AGG - tig0018442:58417-58436 Msa1365990:CDS 45.0%
GTCCTCTCCAGTCAAGAATT+AGG + tig0018442:58422-58441 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG + tig0018442:58460-58479 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG - tig0018442:58458-58477 Msa1365990:CDS 45.0%
ATCCCTTGAATAGCTAGGGA+TGG + tig0018442:58464-58483 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG - tig0018442:58463-58482 Msa1365990:CDS 45.0%
TCCCTAGCTATTCAAGGGAT+GGG - tig0018442:58464-58483 Msa1365990:CDS 45.0%
TTCAAGTCTACCGGTCTGTT+AGG - tig0018442:58585-58604 Msa1365990:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG + tig0018442:58614-58633 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG - tig0018442:58782-58801 Msa1365990:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG - tig0018442:58784-58803 Msa1365990:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG - tig0018442:58865-58884 Msa1365990:CDS 45.0%
ATTAAAGCGGTACGTGAGCT+GGG + tig0018442:58998-59017 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG - tig0018442:58998-59017 Msa1365990:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG + tig0018442:59032-59051 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG + tig0018442:59036-59055 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG + tig0018442:59037-59056 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG - tig0018442:59036-59055 Msa1365990:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG - tig0018442:59381-59400 Msa1365990:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG + tig0018442:59491-59510 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG + tig0018442:59492-59511 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG - tig0018442:59491-59510 Msa1365990:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG - tig0018442:59492-59511 Msa1365990:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG - tig0018442:59506-59525 Msa1365990:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG + tig0018442:59630-59649 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG + tig0018442:59650-59669 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG + tig0018442:59705-59724 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG - tig0018442:59716-59735 Msa1365990:intron 45.0%
AGTCGTAAGACCATGTATGG+GGG + tig0018442:59759-59778 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG - tig0018442:59778-59797 Msa1365990:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018442:58427-58446 Msa1365990:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018442:58468-58487 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018442:58465-58484 Msa1365990:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018442:58466-58485 Msa1365990:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018442:58730-58749 Msa1365990:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018442:58740-58759 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018442:58741-58760 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018442:58872-58891 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018442:58912-58931 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018442:58962-58981 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018442:58973-58992 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018442:58999-59018 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018442:58997-59016 Msa1365990:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018442:59039-59058 Msa1365990:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018442:59072-59091 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018442:59304-59323 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018442:59322-59341 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018442:59357-59376 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018442:59398-59417 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018442:59395-59414 Msa1365990:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018442:59443-59462 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018442:59471-59490 Msa1365990:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018442:59472-59491 Msa1365990:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018442:59479-59498 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018442:59582-59601 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018442:59593-59612 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018442:59593-59612 Msa1365990:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018442:59658-59677 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018442:59706-59725 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018442:59721-59740 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018442:59723-59742 Msa1365990:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG - tig0018442:58427-58446 Msa1365990:CDS 50.0%
CCCCATCCCTTGAATAGCTA+GGG + tig0018442:58468-58487 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG - tig0018442:58465-58484 Msa1365990:CDS 50.0%
CCTAGCTATTCAAGGGATGG+GGG - tig0018442:58466-58485 Msa1365990:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG - tig0018442:58730-58749 Msa1365990:intron 50.0%
ATCACAGCCGAAACAGCGAT+GGG + tig0018442:58740-58759 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG + tig0018442:58741-58760 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG + tig0018442:58872-58891 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG + tig0018442:58912-58931 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG + tig0018442:58962-58981 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG + tig0018442:58973-58992 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG + tig0018442:58999-59018 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG - tig0018442:58997-59016 Msa1365990:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG - tig0018442:59039-59058 Msa1365990:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG + tig0018442:59072-59091 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG + tig0018442:59304-59323 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG + tig0018442:59322-59341 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG + tig0018442:59357-59376 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG + tig0018442:59398-59417 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG - tig0018442:59395-59414 Msa1365990:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG + tig0018442:59443-59462 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG - tig0018442:59471-59490 Msa1365990:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG - tig0018442:59472-59491 Msa1365990:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG + tig0018442:59479-59498 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG + tig0018442:59582-59601 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG + tig0018442:59593-59612 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG - tig0018442:59593-59612 Msa1365990:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG + tig0018442:59658-59677 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG + tig0018442:59706-59725 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG + tig0018442:59721-59740 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG - tig0018442:59723-59742 Msa1365990:intron 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018442:58337-58356 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018442:58469-58488 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018442:58473-58492 Msa1365990:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018442:58598-58617 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018442:58705-58724 Msa1365990:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018442:58706-58725 Msa1365990:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018442:58742-58761 Msa1365990:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018442:58745-58764 Msa1365990:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018442:58788-58807 Msa1365990:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018442:58848-58867 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018442:58861-58880 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018442:58862-58881 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018442:58876-58895 Msa1365990:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018442:58906-58925 Msa1365990:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018442:58911-58930 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018442:58911-58930 Msa1365990:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018442:58917-58936 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018442:58938-58957 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018442:58940-58959 Msa1365990:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018442:58946-58965 Msa1365990:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018442:58956-58975 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018442:58957-58976 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018442:59011-59030 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018442:59086-59105 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018442:59091-59110 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018442:59090-59109 Msa1365990:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018442:59091-59110 Msa1365990:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018442:59096-59115 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018442:59181-59200 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018442:59242-59261 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018442:59240-59259 Msa1365990:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018442:59250-59269 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018442:59273-59292 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018442:59281-59300 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018442:59282-59301 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018442:59291-59310 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018442:59292-59311 Msa1365990:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018442:59293-59312 Msa1365990:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018442:59338-59357 Msa1365990:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018442:59346-59365 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018442:59348-59367 Msa1365990:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018442:59358-59377 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018442:59355-59374 Msa1365990:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018442:59432-59451 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018442:59456-59475 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018442:59480-59499 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018442:59486-59505 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018442:59594-59613 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018442:59594-59613 Msa1365990:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018442:59607-59626 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018442:59698-59717 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018442:59722-59741 Msa1365990:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG + tig0018442:58337-58356 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG + tig0018442:58469-58488 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG - tig0018442:58473-58492 Msa1365990:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG + tig0018442:58598-58617 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG - tig0018442:58705-58724 Msa1365990:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG - tig0018442:58706-58725 Msa1365990:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG - tig0018442:58742-58761 Msa1365990:intron 55.0%
TGTTTCGGCTGTGATACCGG+AGG - tig0018442:58745-58764 Msa1365990:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG - tig0018442:58788-58807 Msa1365990:CDS 55.0%
AAACGCTGGGTAGCCAAGTG+CGG + tig0018442:58848-58867 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG + tig0018442:58861-58880 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG + tig0018442:58862-58881 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG - tig0018442:58876-58895 Msa1365990:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG - tig0018442:58906-58925 Msa1365990:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG + tig0018442:58911-58930 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG - tig0018442:58911-58930 Msa1365990:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG + tig0018442:58917-58936 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG + tig0018442:58938-58957 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG - tig0018442:58940-58959 Msa1365990:intron 55.0%
TCTAACGCCCACACCGGATA+TGG - tig0018442:58946-58965 Msa1365990:intron 55.0%
GTTCGGTCCATATCCGGTGT+GGG + tig0018442:58956-58975 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG + tig0018442:58957-58976 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG + tig0018442:59011-59030 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG + tig0018442:59086-59105 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG + tig0018442:59091-59110 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG - tig0018442:59090-59109 Msa1365990:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG - tig0018442:59091-59110 Msa1365990:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG + tig0018442:59096-59115 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG + tig0018442:59181-59200 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG + tig0018442:59242-59261 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG - tig0018442:59240-59259 Msa1365990:intron 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG + tig0018442:59250-59269 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG + tig0018442:59273-59292 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG + tig0018442:59281-59300 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG + tig0018442:59282-59301 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG + tig0018442:59291-59310 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG - tig0018442:59292-59311 Msa1365990:intron 55.0%
! GCACGCCTCCGTTACCTTTT+GGG - tig0018442:59293-59312 Msa1365990:intron 55.0%
GTCTACCTGAGACTGTCCCT+TGG - tig0018442:59338-59357 Msa1365990:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG + tig0018442:59346-59365 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG - tig0018442:59348-59367 Msa1365990:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG + tig0018442:59358-59377 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG - tig0018442:59355-59374 Msa1365990:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG + tig0018442:59432-59451 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG + tig0018442:59456-59475 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG + tig0018442:59480-59499 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG + tig0018442:59486-59505 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG + tig0018442:59594-59613 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG - tig0018442:59594-59613 Msa1365990:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG + tig0018442:59607-59626 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG + tig0018442:59698-59717 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG - tig0018442:59722-59741 Msa1365990:intron 55.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018442:58325-58344 Msa1365990:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018442:58446-58465 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018442:58453-58472 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018442:58479-58498 Msa1365990:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018442:58707-58726 Msa1365990:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018442:58752-58771 Msa1365990:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018442:58753-58772 Msa1365990:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018442:58766-58785 Msa1365990:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018442:58787-58806 Msa1365990:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018442:58832-58851 Msa1365990:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018442:58853-58872 Msa1365990:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018442:58907-58926 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018442:58905-58924 Msa1365990:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018442:59095-59114 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018442:59092-59111 Msa1365990:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018442:59172-59191 Msa1365990:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018442:59198-59217 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018442:59196-59215 Msa1365990:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018442:59197-59216 Msa1365990:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018442:59239-59258 Msa1365990:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018442:59243-59262 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018442:59296-59315 Msa1365990:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018442:59301-59320 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018442:59428-59447 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018442:59429-59448 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018442:59430-59449 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018442:59431-59450 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018442:59452-59471 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018442:59459-59478 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018442:59512-59531 Msa1365990:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018442:59527-59546 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018442:59570-59589 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018442:59598-59617 Msa1365990:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018442:59614-59633 Msa1365990:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018442:59661-59680 Msa1365990:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018442:59728-59747 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018442:59727-59746 Msa1365990:intron 60.0%
GGTGTGGTTCCTCTACGCCT+AGG - tig0018442:58325-58344 Msa1365990:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG + tig0018442:58446-58465 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG + tig0018442:58453-58472 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG - tig0018442:58479-58498 Msa1365990:CDS 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG - tig0018442:58707-58726 Msa1365990:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG - tig0018442:58752-58771 Msa1365990:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG - tig0018442:58753-58772 Msa1365990:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG - tig0018442:58766-58785 Msa1365990:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG - tig0018442:58787-58806 Msa1365990:CDS 60.0%
GCAGTTATCCGCTCCGCACT+TGG - tig0018442:58832-58851 Msa1365990:CDS 60.0%
GGCTACCCAGCGTTTACCGT+TGG - tig0018442:58853-58872 Msa1365990:CDS 60.0%
CTAGTACGAGAGGACCGGGA+AGG + tig0018442:58907-58926 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG - tig0018442:58905-58924 Msa1365990:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG + tig0018442:59095-59114 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG - tig0018442:59092-59111 Msa1365990:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG - tig0018442:59172-59191 Msa1365990:CDS 60.0%
CGTCGAGCAGGGACGAAAGT+CGG + tig0018442:59198-59217 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG - tig0018442:59196-59215 Msa1365990:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG - tig0018442:59197-59216 Msa1365990:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG - tig0018442:59239-59258 Msa1365990:intron 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG + tig0018442:59243-59262 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG - tig0018442:59296-59315 Msa1365990:intron 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG + tig0018442:59301-59320 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG + tig0018442:59428-59447 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG + tig0018442:59429-59448 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG + tig0018442:59430-59449 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG + tig0018442:59431-59450 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG + tig0018442:59452-59471 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG + tig0018442:59459-59478 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG - tig0018442:59512-59531 Msa1365990:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG + tig0018442:59527-59546 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG + tig0018442:59570-59589 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG - tig0018442:59598-59617 Msa1365990:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG - tig0018442:59614-59633 Msa1365990:intron 60.0%
TAGTTACGGCCGCCGTTCAC+CGG - tig0018442:59661-59680 Msa1365990:intron 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG + tig0018442:59728-59747 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG - tig0018442:59727-59746 Msa1365990:intron 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018442:58722-58741 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018442:58723-58742 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018442:58724-58743 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018442:58751-58770 Msa1365990:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018442:58760-58779 Msa1365990:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018442:58764-58783 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018442:58843-58862 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018442:58890-58909 Msa1365990:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018442:59017-59036 Msa1365990:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018442:59057-59076 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018442:59058-59077 Msa1365990:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018442:59152-59171 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018442:59153-59172 Msa1365990:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018442:59166-59185 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018442:59167-59186 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018442:59171-59190 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018442:59200-59219 Msa1365990:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018442:59201-59220 Msa1365990:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018442:59209-59228 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018442:59255-59274 Msa1365990:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018442:59266-59285 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018442:59310-59329 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018442:59427-59446 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018442:59448-59467 Msa1365990:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018442:59575-59594 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018442:59662-59681 Msa1365990:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018442:59692-59711 Msa1365990:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018442:59746-59765 Msa1365990:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG + tig0018442:58722-58741 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG + tig0018442:58723-58742 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG + tig0018442:58724-58743 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG - tig0018442:58751-58770 Msa1365990:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG - tig0018442:58760-58779 Msa1365990:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG + tig0018442:58764-58783 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG + tig0018442:58843-58862 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG - tig0018442:58890-58909 Msa1365990:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG - tig0018442:59017-59036 Msa1365990:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG + tig0018442:59057-59076 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG - tig0018442:59058-59077 Msa1365990:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG + tig0018442:59152-59171 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG - tig0018442:59153-59172 Msa1365990:CDS 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG + tig0018442:59166-59185 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG + tig0018442:59167-59186 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG + tig0018442:59171-59190 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG - tig0018442:59200-59219 Msa1365990:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG - tig0018442:59201-59220 Msa1365990:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG + tig0018442:59209-59228 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG - tig0018442:59255-59274 Msa1365990:intron 65.0%
TCCTCGGGCCAGACGGAGAT+TGG + tig0018442:59266-59285 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG + tig0018442:59310-59329 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG + tig0018442:59427-59446 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG - tig0018442:59448-59467 Msa1365990:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG + tig0018442:59575-59594 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG - tig0018442:59662-59681 Msa1365990:intron 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG - tig0018442:59692-59711 Msa1365990:intron 65.0%
CAGGCGTCAGCCCCCATACA+TGG - tig0018442:59746-59765 Msa1365990:intron 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018442:58718-58737 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018442:58895-58914 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018442:59162-59181 Msa1365990:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018442:59210-59229 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018442:59262-59281 Msa1365990:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018442:59410-59429 Msa1365990:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018442:59663-59682 Msa1365990:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018442:59673-59692 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018442:59676-59695 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018442:59676-59695 Msa1365990:intron 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG + tig0018442:58718-58737 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG + tig0018442:58895-58914 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG - tig0018442:59162-59181 Msa1365990:CDS 70.0%
GCAAGACCCACCCGTCGAGC+AGG + tig0018442:59210-59229 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG - tig0018442:59262-59281 Msa1365990:intron 70.0%
ACTGATGGCTCGAGCCCCCC+CGG - tig0018442:59410-59429 Msa1365990:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG - tig0018442:59663-59682 Msa1365990:intron 70.0%
ACCGAAGCCCCGGTGAACGG+CGG + tig0018442:59673-59692 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG + tig0018442:59676-59695 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG - tig0018442:59676-59695 Msa1365990:intron 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018442:59414-59433 Msa1365990:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018442:59669-59688 Msa1365990:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018442:59683-59702 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018442:59734-59753 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018442:59738-59757 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG - tig0018442:59414-59433 Msa1365990:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG - tig0018442:59669-59688 Msa1365990:intron 75.0%
GAAGCCGGCGACCGAAGCCC+CGG + tig0018442:59683-59702 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG + tig0018442:59734-59753 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG + tig0018442:59738-59757 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018442:59417-59436 Msa1365990:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG - tig0018442:59417-59436 Msa1365990:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 58318 59803 58318 ID=Msa1365990;Name=Msa1365990
tig0018442 mRNA 58318 59803 58318 ID=Msa1365990-mRNA-1;Parent=Msa1365990;Name=Msa1365990-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.5|1|1|6|0|280
tig0018442 exon 59747 59803 59747 ID=Msa1365990-mRNA-1:exon:14890;Parent=Msa1365990-mRNA-1
tig0018442 exon 59554 59628 59554 ID=Msa1365990-mRNA-1:exon:14889;Parent=Msa1365990-mRNA-1
tig0018442 exon 59316 59394 59316 ID=Msa1365990-mRNA-1:exon:14888;Parent=Msa1365990-mRNA-1
tig0018442 exon 58984 59194 58984 ID=Msa1365990-mRNA-1:exon:14887;Parent=Msa1365990-mRNA-1
tig0018442 exon 58745 58889 58745 ID=Msa1365990-mRNA-1:exon:14886;Parent=Msa1365990-mRNA-1
tig0018442 exon 58318 58593 58318 ID=Msa1365990-mRNA-1:exon:14885;Parent=Msa1365990-mRNA-1
tig0018442 CDS 59747 59803 59747 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
tig0018442 CDS 59554 59628 59554 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
tig0018442 CDS 59316 59394 59316 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
tig0018442 CDS 58984 59194 58984 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
tig0018442 CDS 58745 58889 58745 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
tig0018442 CDS 58318 58593 58318 ID=Msa1365990-mRNA-1:cds;Parent=Msa1365990-mRNA-1
Gene Sequence

>Msa1365990

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1365990

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*