AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1366020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1366020 MtrunA17_Chr4g0016151 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366020 MtrunA17_CPg0492351 100.000 82 0 0 199 280 1 82 7.40e-55 172
Msa1366020 MtrunA17_Chr7g0229411 98.780 82 1 0 199 280 1 82 3.39e-54 170
Msa1366020 MtrunA17_Chr4g0000631 98.780 82 1 0 199 280 1 82 3.50e-54 170
Msa1366020 MtrunA17_Chr5g0435911 97.561 82 2 0 199 280 1 82 1.38e-52 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 122 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTCATGGTTCGATATTC+TGG 0.185586 tig0018442:-146345 None:intergenic
TGCACGCCTCCGTTACCTTT+TGG 0.196515 tig0018442:+147286 Msa1366020:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 tig0018442:+146991 Msa1366020:CDS
TCATGCCTTTACTTCGTTCA+TGG 0.272664 tig0018442:-146358 None:intergenic
GGCTGTGATACCGGAGGCTC+TGG 0.279951 tig0018442:+146745 Msa1366020:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 tig0018442:-147321 None:intergenic
GCACGAAAGGCGTAACGATC+TGG 0.311741 tig0018442:-147585 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 tig0018442:+146940 Msa1366020:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 tig0018442:+146724 Msa1366020:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 tig0018442:-147257 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 tig0018442:+147085 Msa1366020:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 tig0018442:+147710 Msa1366020:CDS
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 tig0018442:+147670 Msa1366020:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 tig0018442:-147753 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 tig0018442:-147117 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 tig0018442:-146990 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 tig0018442:+147084 Msa1366020:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 tig0018442:+146992 Msa1366020:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 tig0018442:+147663 Msa1366020:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 tig0018442:+146736 Msa1366020:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 tig0018442:+146777 Msa1366020:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 tig0018442:-147719 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 tig0018442:+147233 Msa1366020:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 tig0018442:-147077 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 tig0018442:+147716 Msa1366020:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 tig0018442:-147022 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 tig0018442:+147655 Msa1366020:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 tig0018442:-147729 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 tig0018442:+147721 Msa1366020:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 tig0018442:+147656 Msa1366020:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 tig0018442:+146515 Msa1366020:CDS
CCACCAAGTTCGGGATGGAT+TGG 0.447763 tig0018442:+146298 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 tig0018442:-147023 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 tig0018442:+147686 Msa1366020:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 tig0018442:-146953 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 tig0018442:-147337 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 tig0018442:-146964 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 tig0018442:-147674 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 tig0018442:+147234 Msa1366020:CDS
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 tig0018442:+147342 Msa1366020:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 tig0018442:-147086 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 tig0018442:+147756 Msa1366020:CDS
GTTCGATATTCTGGTGTCCT+AGG 0.478291 tig0018442:-146336 None:intergenic
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 tig0018442:-146755 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 tig0018442:+147249 Msa1366020:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 tig0018442:-147712 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 tig0018442:+146776 Msa1366020:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 tig0018442:+147625 Msa1366020:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 tig0018442:+146760 Msa1366020:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 tig0018442:-147584 None:intergenic
GAAGTTGGTGACCTGATGAC+AGG 0.495416 tig0018442:-147697 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 tig0018442:-147621 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 tig0018442:+146540 Msa1366020:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 tig0018442:+147717 Msa1366020:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 tig0018442:-147667 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 tig0018442:-147561 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 tig0018442:-147048 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 tig0018442:+146746 Msa1366020:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 tig0018442:-147320 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 tig0018442:-147234 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 tig0018442:-147622 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 tig0018442:-147573 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 tig0018442:-146544 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 tig0018442:+147588 Msa1366020:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 tig0018442:-147689 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 tig0018442:+147641 Msa1366020:CDS
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 tig0018442:-147273 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 tig0018442:-147272 None:intergenic
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 tig0018442:+147086 Msa1366020:CDS
CCTTGGTCTGTACTGGCACA+AGG 0.538614 tig0018442:+147349 Msa1366020:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 tig0018442:-146989 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 tig0018442:-147566 None:intergenic
AAGGTTTGGCACCTCGATGT+CGG 0.545826 tig0018442:-147063 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 tig0018442:+147011 Msa1366020:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 tig0018442:-147087 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 tig0018442:-147752 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 tig0018442:+147256 Msa1366020:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 tig0018442:-147028 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 tig0018442:-147664 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 tig0018442:+147587 Msa1366020:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 tig0018442:+146754 Msa1366020:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 tig0018442:-147725 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 tig0018442:-146732 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 tig0018442:-147641 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 tig0018442:+147030 Msa1366020:CDS
TAAGTTCCGACCCGCACGAA+AGG 0.581321 tig0018442:-147598 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 tig0018442:+147332 Msa1366020:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 tig0018442:-147282 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 tig0018442:-147233 None:intergenic
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 tig0018442:-147264 None:intergenic
CTGTGATACCGGAGGCTCTG+GGG 0.598997 tig0018442:+146747 Msa1366020:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 tig0018442:-147649 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 tig0018442:+147592 Msa1366020:CDS
GGTGTGGTTCCTCTACGCCT+AGG 0.606362 tig0018442:+146319 Msa1366020:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 tig0018442:-147301 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 tig0018442:-146947 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 tig0018442:-147082 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 tig0018442:-146948 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 tig0018442:-147002 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 tig0018442:-146731 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 tig0018442:-147751 None:intergenic
TTCTGGTGTCCTAGGCGTAG+AGG 0.622900 tig0018442:-146328 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 tig0018442:-147313 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 tig0018442:+146778 Msa1366020:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 tig0018442:-147696 None:intergenic
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 tig0018442:-147295 None:intergenic
AAGTTCGGGATGGATTGGTG+TGG 0.636372 tig0018442:+146303 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 tig0018442:-147027 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 tig0018442:-147533 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 tig0018442:-147349 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 tig0018442:+147608 Msa1366020:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 tig0018442:+146934 Msa1366020:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 tig0018442:-147241 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 tig0018442:-147292 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 tig0018442:-147750 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 tig0018442:-147348 None:intergenic
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 tig0018442:-146929 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 tig0018442:+147052 Msa1366020:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 tig0018442:+146739 Msa1366020:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 tig0018442:-147319 None:intergenic
GTTACGGCCGCCGTTCACCG+GGG 0.732311 tig0018442:+147657 Msa1366020:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 tig0018442:+147033 Msa1366020:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGTTGAACAATCAAAATAGA+TGG + tig0018442:146515-146534 Msa1366020:CDS 25.0%
! AGTTGAACAATCAAAATAGA+TGG + tig0018442:146515-146534 Msa1366020:CDS 25.0%
CACCTATCGTTAATGAAAAA+CGG + tig0018442:146639-146658 Msa1366020:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0018442:146680-146699 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0018442:147128-147147 None:intergenic 30.0%
CACCTATCGTTAATGAAAAA+CGG + tig0018442:146639-146658 Msa1366020:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - tig0018442:146680-146699 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - tig0018442:147128-147147 None:intergenic 30.0%
! CATATTGACTAGTCAATGTC+AGG + tig0018442:146389-146408 Msa1366020:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0018442:146644-146663 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0018442:147120-147139 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0018442:147129-147148 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0018442:147755-147774 None:intergenic 35.0%
! CATATTGACTAGTCAATGTC+AGG + tig0018442:146389-146408 Msa1366020:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - tig0018442:146644-146663 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - tig0018442:147120-147139 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - tig0018442:147129-147148 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - tig0018442:147755-147774 None:intergenic 35.0%
TCGTTCATGGTTCGATATTC+TGG - tig0018442:146348-146367 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0018442:146353-146372 Msa1366020:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0018442:146361-146380 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0018442:146453-146472 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0018442:146453-146472 Msa1366020:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0018442:146540-146559 Msa1366020:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0018442:146547-146566 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0018442:146556-146575 Msa1366020:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0018442:146570-146589 Msa1366020:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0018442:146634-146653 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0018442:146674-146693 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0018442:146777-146796 Msa1366020:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0018442:147025-147044 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0018442:147134-147153 Msa1366020:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0018442:147322-147341 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0018442:147323-147342 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0018442:147324-147343 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0018442:147536-147555 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0018442:147625-147644 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0018442:147625-147644 Msa1366020:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0018442:147641-147660 Msa1366020:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0018442:147754-147773 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0018442:147756-147775 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0018442:147756-147775 Msa1366020:CDS 40.0%
TCGTTCATGGTTCGATATTC+TGG - tig0018442:146348-146367 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + tig0018442:146353-146372 Msa1366020:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - tig0018442:146361-146380 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - tig0018442:146453-146472 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + tig0018442:146453-146472 Msa1366020:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + tig0018442:146540-146559 Msa1366020:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - tig0018442:146547-146566 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + tig0018442:146556-146575 Msa1366020:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + tig0018442:146570-146589 Msa1366020:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - tig0018442:146634-146653 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - tig0018442:146674-146693 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + tig0018442:146777-146796 Msa1366020:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - tig0018442:147025-147044 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + tig0018442:147134-147153 Msa1366020:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - tig0018442:147322-147341 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - tig0018442:147323-147342 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - tig0018442:147324-147343 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - tig0018442:147536-147555 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - tig0018442:147625-147644 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + tig0018442:147625-147644 Msa1366020:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + tig0018442:147641-147660 Msa1366020:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - tig0018442:147754-147773 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - tig0018442:147756-147775 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + tig0018442:147756-147775 Msa1366020:CDS 40.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0018442:146339-146358 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0018442:146406-146425 Msa1366020:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0018442:146411-146430 Msa1366020:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0018442:146416-146435 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0018442:146454-146473 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0018442:146452-146471 Msa1366020:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0018442:146458-146477 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0018442:146457-146476 Msa1366020:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0018442:146458-146477 Msa1366020:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0018442:146579-146598 Msa1366020:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0018442:146608-146627 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0018442:146776-146795 Msa1366020:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0018442:146778-146797 Msa1366020:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0018442:146859-146878 Msa1366020:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0018442:146992-147011 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0018442:146992-147011 Msa1366020:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0018442:147026-147045 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0018442:147030-147049 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0018442:147031-147050 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0018442:147030-147049 Msa1366020:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0018442:147375-147394 Msa1366020:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0018442:147485-147504 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0018442:147486-147505 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0018442:147485-147504 Msa1366020:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0018442:147486-147505 Msa1366020:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0018442:147500-147519 Msa1366020:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0018442:147624-147643 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0018442:147644-147663 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0018442:147699-147718 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0018442:147710-147729 Msa1366020:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0018442:147753-147772 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0018442:147772-147791 Msa1366020:CDS 45.0%
GTTCGATATTCTGGTGTCCT+AGG - tig0018442:146339-146358 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + tig0018442:146406-146425 Msa1366020:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + tig0018442:146411-146430 Msa1366020:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - tig0018442:146416-146435 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - tig0018442:146454-146473 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + tig0018442:146452-146471 Msa1366020:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - tig0018442:146458-146477 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + tig0018442:146457-146476 Msa1366020:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + tig0018442:146458-146477 Msa1366020:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + tig0018442:146579-146598 Msa1366020:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - tig0018442:146608-146627 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + tig0018442:146776-146795 Msa1366020:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + tig0018442:146778-146797 Msa1366020:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + tig0018442:146859-146878 Msa1366020:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - tig0018442:146992-147011 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + tig0018442:146992-147011 Msa1366020:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - tig0018442:147026-147045 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - tig0018442:147030-147049 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - tig0018442:147031-147050 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + tig0018442:147030-147049 Msa1366020:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + tig0018442:147375-147394 Msa1366020:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - tig0018442:147485-147504 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - tig0018442:147486-147505 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + tig0018442:147485-147504 Msa1366020:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + tig0018442:147486-147505 Msa1366020:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + tig0018442:147500-147519 Msa1366020:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - tig0018442:147624-147643 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - tig0018442:147644-147663 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - tig0018442:147699-147718 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + tig0018442:147710-147729 Msa1366020:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - tig0018442:147753-147772 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + tig0018442:147772-147791 Msa1366020:CDS 45.0%
TTGACTGGAGAGGACACCAA+AGG + tig0018442:146421-146440 Msa1366020:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0018442:146462-146481 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0018442:146459-146478 Msa1366020:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0018442:146460-146479 Msa1366020:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0018442:146724-146743 Msa1366020:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0018442:146734-146753 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0018442:146735-146754 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0018442:146866-146885 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0018442:146906-146925 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0018442:146956-146975 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0018442:146967-146986 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0018442:146993-147012 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0018442:146991-147010 Msa1366020:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0018442:147033-147052 Msa1366020:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0018442:147066-147085 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0018442:147298-147317 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0018442:147316-147335 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0018442:147351-147370 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0018442:147392-147411 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0018442:147389-147408 Msa1366020:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0018442:147437-147456 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0018442:147465-147484 Msa1366020:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0018442:147466-147485 Msa1366020:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0018442:147473-147492 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0018442:147576-147595 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0018442:147587-147606 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0018442:147587-147606 Msa1366020:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0018442:147652-147671 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0018442:147700-147719 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0018442:147715-147734 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0018442:147717-147736 Msa1366020:CDS 50.0%
TTGACTGGAGAGGACACCAA+AGG + tig0018442:146421-146440 Msa1366020:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - tig0018442:146462-146481 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + tig0018442:146459-146478 Msa1366020:intron 50.0%
CCTAGCTATTCAAGGGATGG+GGG + tig0018442:146460-146479 Msa1366020:intron 50.0%
CAGAGAACCCATCGCTGTTT+CGG + tig0018442:146724-146743 Msa1366020:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - tig0018442:146734-146753 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - tig0018442:146735-146754 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - tig0018442:146866-146885 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - tig0018442:146906-146925 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - tig0018442:146956-146975 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - tig0018442:146967-146986 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - tig0018442:146993-147012 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + tig0018442:146991-147010 Msa1366020:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + tig0018442:147033-147052 Msa1366020:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - tig0018442:147066-147085 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - tig0018442:147298-147317 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - tig0018442:147316-147335 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - tig0018442:147351-147370 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - tig0018442:147392-147411 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + tig0018442:147389-147408 Msa1366020:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - tig0018442:147437-147456 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + tig0018442:147465-147484 Msa1366020:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + tig0018442:147466-147485 Msa1366020:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - tig0018442:147473-147492 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - tig0018442:147576-147595 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - tig0018442:147587-147606 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + tig0018442:147587-147606 Msa1366020:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - tig0018442:147652-147671 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - tig0018442:147700-147719 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - tig0018442:147715-147734 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + tig0018442:147717-147736 Msa1366020:CDS 50.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0018442:146331-146350 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0018442:146463-146482 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0018442:146467-146486 Msa1366020:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0018442:146592-146611 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0018442:146699-146718 Msa1366020:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0018442:146700-146719 Msa1366020:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0018442:146736-146755 Msa1366020:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0018442:146739-146758 Msa1366020:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0018442:146782-146801 Msa1366020:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0018442:146842-146861 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0018442:146855-146874 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0018442:146856-146875 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0018442:146870-146889 Msa1366020:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0018442:146900-146919 Msa1366020:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0018442:146905-146924 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0018442:146905-146924 Msa1366020:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0018442:146911-146930 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0018442:146932-146951 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0018442:146934-146953 Msa1366020:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0018442:146940-146959 Msa1366020:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0018442:146950-146969 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0018442:146951-146970 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0018442:147005-147024 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0018442:147080-147099 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0018442:147085-147104 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0018442:147084-147103 Msa1366020:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0018442:147085-147104 Msa1366020:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0018442:147090-147109 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0018442:147175-147194 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0018442:147236-147255 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0018442:147234-147253 Msa1366020:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0018442:147244-147263 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0018442:147267-147286 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0018442:147275-147294 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0018442:147276-147295 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0018442:147285-147304 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0018442:147286-147305 Msa1366020:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0018442:147287-147306 Msa1366020:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0018442:147332-147351 Msa1366020:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0018442:147340-147359 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0018442:147342-147361 Msa1366020:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0018442:147352-147371 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0018442:147349-147368 Msa1366020:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0018442:147426-147445 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0018442:147450-147469 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0018442:147474-147493 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0018442:147480-147499 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0018442:147588-147607 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0018442:147588-147607 Msa1366020:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0018442:147601-147620 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0018442:147692-147711 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0018442:147716-147735 Msa1366020:CDS 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - tig0018442:146331-146350 None:intergenic 55.0%
CCCCCATCCCTTGAATAGCT+AGG - tig0018442:146463-146482 None:intergenic 55.0%
ATTCAAGGGATGGGGGACAG+AGG + tig0018442:146467-146486 Msa1366020:intron 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - tig0018442:146592-146611 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + tig0018442:146699-146718 Msa1366020:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + tig0018442:146700-146719 Msa1366020:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + tig0018442:146736-146755 Msa1366020:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + tig0018442:146739-146758 Msa1366020:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + tig0018442:146782-146801 Msa1366020:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - tig0018442:146842-146861 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - tig0018442:146855-146874 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - tig0018442:146856-146875 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + tig0018442:146870-146889 Msa1366020:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + tig0018442:146900-146919 Msa1366020:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - tig0018442:146905-146924 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + tig0018442:146905-146924 Msa1366020:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - tig0018442:146911-146930 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - tig0018442:146932-146951 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + tig0018442:146934-146953 Msa1366020:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + tig0018442:146940-146959 Msa1366020:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - tig0018442:146950-146969 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - tig0018442:146951-146970 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - tig0018442:147005-147024 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - tig0018442:147080-147099 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - tig0018442:147085-147104 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + tig0018442:147084-147103 Msa1366020:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + tig0018442:147085-147104 Msa1366020:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - tig0018442:147090-147109 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - tig0018442:147175-147194 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - tig0018442:147236-147255 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + tig0018442:147234-147253 Msa1366020:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - tig0018442:147244-147263 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - tig0018442:147267-147286 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - tig0018442:147275-147294 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - tig0018442:147276-147295 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - tig0018442:147285-147304 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + tig0018442:147286-147305 Msa1366020:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + tig0018442:147287-147306 Msa1366020:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + tig0018442:147332-147351 Msa1366020:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - tig0018442:147340-147359 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + tig0018442:147342-147361 Msa1366020:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - tig0018442:147352-147371 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + tig0018442:147349-147368 Msa1366020:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - tig0018442:147426-147445 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - tig0018442:147450-147469 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - tig0018442:147474-147493 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - tig0018442:147480-147499 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - tig0018442:147588-147607 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + tig0018442:147588-147607 Msa1366020:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - tig0018442:147601-147620 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - tig0018442:147692-147711 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + tig0018442:147716-147735 Msa1366020:CDS 55.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0018442:146319-146338 Msa1366020:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0018442:146440-146459 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0018442:146447-146466 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0018442:146473-146492 Msa1366020:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0018442:146701-146720 Msa1366020:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0018442:146746-146765 Msa1366020:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0018442:146747-146766 Msa1366020:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0018442:146760-146779 Msa1366020:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0018442:146781-146800 Msa1366020:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0018442:146826-146845 Msa1366020:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0018442:146847-146866 Msa1366020:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0018442:146901-146920 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0018442:146899-146918 Msa1366020:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0018442:147089-147108 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0018442:147086-147105 Msa1366020:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0018442:147166-147185 Msa1366020:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0018442:147192-147211 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0018442:147190-147209 Msa1366020:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0018442:147191-147210 Msa1366020:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0018442:147233-147252 Msa1366020:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0018442:147237-147256 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0018442:147290-147309 Msa1366020:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0018442:147295-147314 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0018442:147422-147441 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0018442:147423-147442 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0018442:147424-147443 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0018442:147425-147444 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0018442:147446-147465 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0018442:147453-147472 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0018442:147506-147525 Msa1366020:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0018442:147521-147540 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0018442:147564-147583 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0018442:147592-147611 Msa1366020:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0018442:147608-147627 Msa1366020:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0018442:147655-147674 Msa1366020:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0018442:147722-147741 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0018442:147721-147740 Msa1366020:CDS 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + tig0018442:146319-146338 Msa1366020:CDS 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - tig0018442:146440-146459 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - tig0018442:146447-146466 None:intergenic 60.0%
! GGGATGGGGGACAGAGGTTT+TGG + tig0018442:146473-146492 Msa1366020:intron 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + tig0018442:146701-146720 Msa1366020:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + tig0018442:146746-146765 Msa1366020:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + tig0018442:146747-146766 Msa1366020:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + tig0018442:146760-146779 Msa1366020:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + tig0018442:146781-146800 Msa1366020:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + tig0018442:146826-146845 Msa1366020:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + tig0018442:146847-146866 Msa1366020:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - tig0018442:146901-146920 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + tig0018442:146899-146918 Msa1366020:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - tig0018442:147089-147108 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + tig0018442:147086-147105 Msa1366020:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + tig0018442:147166-147185 Msa1366020:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - tig0018442:147192-147211 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + tig0018442:147190-147209 Msa1366020:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + tig0018442:147191-147210 Msa1366020:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + tig0018442:147233-147252 Msa1366020:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - tig0018442:147237-147256 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + tig0018442:147290-147309 Msa1366020:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - tig0018442:147295-147314 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - tig0018442:147422-147441 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - tig0018442:147423-147442 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - tig0018442:147424-147443 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - tig0018442:147425-147444 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - tig0018442:147446-147465 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - tig0018442:147453-147472 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + tig0018442:147506-147525 Msa1366020:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - tig0018442:147521-147540 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - tig0018442:147564-147583 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + tig0018442:147592-147611 Msa1366020:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + tig0018442:147608-147627 Msa1366020:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + tig0018442:147655-147674 Msa1366020:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - tig0018442:147722-147741 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + tig0018442:147721-147740 Msa1366020:CDS 60.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0018442:146716-146735 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0018442:146717-146736 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0018442:146718-146737 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0018442:146745-146764 Msa1366020:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0018442:146754-146773 Msa1366020:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0018442:146758-146777 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0018442:146837-146856 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0018442:146884-146903 Msa1366020:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0018442:147011-147030 Msa1366020:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0018442:147051-147070 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0018442:147052-147071 Msa1366020:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0018442:147146-147165 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0018442:147147-147166 Msa1366020:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0018442:147160-147179 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0018442:147161-147180 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0018442:147165-147184 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0018442:147194-147213 Msa1366020:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0018442:147195-147214 Msa1366020:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0018442:147203-147222 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0018442:147249-147268 Msa1366020:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0018442:147260-147279 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0018442:147304-147323 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0018442:147421-147440 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0018442:147442-147461 Msa1366020:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0018442:147569-147588 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0018442:147656-147675 Msa1366020:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0018442:147686-147705 Msa1366020:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0018442:147740-147759 Msa1366020:CDS 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - tig0018442:146716-146735 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - tig0018442:146717-146736 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - tig0018442:146718-146737 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + tig0018442:146745-146764 Msa1366020:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + tig0018442:146754-146773 Msa1366020:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - tig0018442:146758-146777 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - tig0018442:146837-146856 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + tig0018442:146884-146903 Msa1366020:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + tig0018442:147011-147030 Msa1366020:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - tig0018442:147051-147070 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + tig0018442:147052-147071 Msa1366020:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - tig0018442:147146-147165 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + tig0018442:147147-147166 Msa1366020:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - tig0018442:147160-147179 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - tig0018442:147161-147180 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - tig0018442:147165-147184 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + tig0018442:147194-147213 Msa1366020:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + tig0018442:147195-147214 Msa1366020:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - tig0018442:147203-147222 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + tig0018442:147249-147268 Msa1366020:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - tig0018442:147260-147279 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - tig0018442:147304-147323 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - tig0018442:147421-147440 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + tig0018442:147442-147461 Msa1366020:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - tig0018442:147569-147588 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + tig0018442:147656-147675 Msa1366020:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + tig0018442:147686-147705 Msa1366020:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + tig0018442:147740-147759 Msa1366020:CDS 65.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0018442:146712-146731 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0018442:146889-146908 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0018442:147156-147175 Msa1366020:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0018442:147204-147223 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0018442:147256-147275 Msa1366020:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0018442:147404-147423 Msa1366020:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0018442:147657-147676 Msa1366020:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0018442:147667-147686 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0018442:147670-147689 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0018442:147670-147689 Msa1366020:CDS 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - tig0018442:146712-146731 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - tig0018442:146889-146908 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + tig0018442:147156-147175 Msa1366020:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - tig0018442:147204-147223 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + tig0018442:147256-147275 Msa1366020:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + tig0018442:147404-147423 Msa1366020:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + tig0018442:147657-147676 Msa1366020:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - tig0018442:147667-147686 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - tig0018442:147670-147689 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + tig0018442:147670-147689 Msa1366020:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0018442:147408-147427 Msa1366020:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0018442:147663-147682 Msa1366020:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0018442:147677-147696 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0018442:147728-147747 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0018442:147732-147751 None:intergenic 75.0%
ATGGCTCGAGCCCCCCCGGA+AGG + tig0018442:147408-147427 Msa1366020:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + tig0018442:147663-147682 Msa1366020:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - tig0018442:147677-147696 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - tig0018442:147728-147747 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - tig0018442:147732-147751 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0018442:147411-147430 Msa1366020:intron 80.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + tig0018442:147411-147430 Msa1366020:intron 80.0%
Chromosome Type Strat End Strand Name
tig0018442 gene 146312 147797 146312 ID=Msa1366020;Name=Msa1366020
tig0018442 mRNA 146312 147797 146312 ID=Msa1366020-mRNA-1;Parent=Msa1366020;Name=Msa1366020-mRNA-1;_AED=0.47;_eAED=0.73;_QI=0|0|0|0.5|1|1|6|0|280
tig0018442 exon 146312 146368 146312 ID=Msa1366020-mRNA-1:exon:14922;Parent=Msa1366020-mRNA-1
tig0018442 exon 146487 146561 146487 ID=Msa1366020-mRNA-1:exon:14923;Parent=Msa1366020-mRNA-1
tig0018442 exon 146721 146799 146721 ID=Msa1366020-mRNA-1:exon:14924;Parent=Msa1366020-mRNA-1
tig0018442 exon 146921 147131 146921 ID=Msa1366020-mRNA-1:exon:14925;Parent=Msa1366020-mRNA-1
tig0018442 exon 147226 147370 147226 ID=Msa1366020-mRNA-1:exon:14926;Parent=Msa1366020-mRNA-1
tig0018442 exon 147522 147797 147522 ID=Msa1366020-mRNA-1:exon:14927;Parent=Msa1366020-mRNA-1
tig0018442 CDS 146312 146368 146312 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
tig0018442 CDS 146487 146561 146487 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
tig0018442 CDS 146721 146799 146721 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
tig0018442 CDS 146921 147131 146921 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
tig0018442 CDS 147226 147370 147226 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
tig0018442 CDS 147522 147797 147522 ID=Msa1366020-mRNA-1:cds;Parent=Msa1366020-mRNA-1
Gene Sequence

>Msa1366020

ATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA

Protein sequence

>Msa1366020

MDWCGSSTPRTPEYRTMNERFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*