AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1086940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1086940 MtrunA17_Chr4g0016151 100.000 82 0 0 273 354 1 82 1.47e-54 173
Msa1086940 MtrunA17_CPg0492351 100.000 82 0 0 273 354 1 82 1.47e-54 173
Msa1086940 MtrunA17_Chr4g0000631 98.780 82 1 0 273 354 1 82 6.04e-54 172
Msa1086940 MtrunA17_Chr7g0229411 98.780 82 1 0 273 354 1 82 6.80e-54 172
Msa1086940 MtrunA17_Chr5g0435911 97.561 82 2 0 273 354 1 82 3.03e-52 167
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 144 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCACGCCTCCGTTACCTTT+TGG 0.196515 7_2:+87623267 Msa1086940:CDS
CAGCTCACGTACCGCTTTAA+TGG 0.245260 7_2:+87622972 Msa1086940:CDS
AGGGATGGGGACAGAGGTTT+TGG 0.267530 7_2:+87622454 Msa1086940:CDS
GGCTGTGATACCGGAGGCTC+TGG 0.279951 7_2:+87622726 Msa1086940:CDS
TCTCAGGTAGACAGTTTCTA+TGG 0.287253 7_2:-87623302 None:intergenic
TTCATTCCGTATTACTAATT+CGG 0.298997 7_2:+87621360 Msa1086940:CDS
GCACGAAAGGCGTAACGATC+TGG 0.311741 7_2:-87623566 None:intergenic
TCTAACGCCCACACCGGATA+TGG 0.325084 7_2:+87622921 Msa1086940:CDS
CAGAGAACCCATCGCTGTTT+CGG 0.333458 7_2:+87622705 Msa1086940:CDS
TCCTCGGGCCAGACGGAGAT+TGG 0.349112 7_2:-87623238 None:intergenic
ACTATGTTTGCTCTCGGTAA+TGG 0.354345 7_2:-87621636 None:intergenic
TCCCGTCGATGTGAGCTCTT+GGG 0.355274 7_2:+87623066 Msa1086940:CDS
CACCAACTTCCTTAACCTTC+CGG 0.362818 7_2:+87623691 Msa1086940:CDS
CTATGTTTGCTCTCGGTAAT+GGG 0.366849 7_2:-87621635 None:intergenic
TTCACCGGGGCTTCGGTCGC+CGG 0.371598 7_2:+87623651 Msa1086940:CDS
CAAAGTCGTAAGACCATGTA+TGG 0.380055 7_2:-87623734 None:intergenic
AAAGTTACTCTAGGGATAAC+AGG 0.383241 7_2:-87623098 None:intergenic
CATTAAAGCGGTACGTGAGC+TGG 0.384796 7_2:-87622971 None:intergenic
TTCCCGTCGATGTGAGCTCT+TGG 0.386490 7_2:+87623065 Msa1086940:CDS
AGCTCACGTACCGCTTTAAT+GGG 0.395506 7_2:+87622973 Msa1086940:CDS
GCCGCCGTTCACCGGGGCTT+CGG 0.397671 7_2:+87623644 Msa1086940:CDS
CGCTGTTTCGGCTGTGATAC+CGG 0.403155 7_2:+87622717 Msa1086940:CDS
AATAGGAGAGCACTCATCTT+GGG 0.408942 7_2:+87622758 Msa1086940:CDS
TGCCCAGTGCCGGAAGGTTA+AGG 0.409134 7_2:-87623700 None:intergenic
CCCTTCTGCCTTTGCACTCG+AGG 0.411231 7_2:+87623214 Msa1086940:CDS
CTCACATCGACGGGAAGGTT+TGG 0.420533 7_2:-87623058 None:intergenic
CTTCCTTAACCTTCCGGCAC+TGG 0.422146 7_2:+87623697 Msa1086940:CDS
TGTAGTATGTTCCAAGGGTT+GGG 0.424624 7_2:-87623003 None:intergenic
TAGTTACGGCCGCCGTTCAC+CGG 0.432611 7_2:+87623636 Msa1086940:CDS
GGCTGACGCCTGCCCAGTGC+CGG 0.435469 7_2:-87623710 None:intergenic
TTAACCTTCCGGCACTGGGC+AGG 0.436659 7_2:+87623702 Msa1086940:CDS
AGTTACGGCCGCCGTTCACC+GGG 0.437053 7_2:+87623637 Msa1086940:CDS
AGTTGAACAATCAAAATAGA+TGG 0.442588 7_2:+87622496 Msa1086940:CDS
CTTCCATCCCTAGCTATTCA+AGG 0.450796 7_2:+87622434 Msa1086940:intron
CTCTCGGTAATGGGCCTCTC+GGG 0.451455 7_2:-87621626 None:intergenic
CTGTAGTATGTTCCAAGGGT+TGG 0.452990 7_2:-87623004 None:intergenic
TCGCCGGCTTCCCTGTCATC+AGG 0.453580 7_2:+87623667 Msa1086940:CDS
GAGACAGTTCGGTCCATATC+CGG 0.455659 7_2:-87622934 None:intergenic
ACAGACCAAGGGACAGTCTC+AGG 0.456050 7_2:-87623318 None:intergenic
CAGAACGTCGTGAGACAGTT+CGG 0.457061 7_2:-87622945 None:intergenic
GAAGCCGGCGACCGAAGCCC+CGG 0.461073 7_2:-87623655 None:intergenic
CCTTCTGCCTTTGCACTCGA+GGG 0.461384 7_2:+87623215 Msa1086940:CDS
GCTCTCGGTAATGGGCCTCT+CGG 0.461659 7_2:-87621627 None:intergenic
GACTGTCCCTTGGTCTGTAC+TGG 0.464231 7_2:+87623323 Msa1086940:CDS
CCCCAAGAGCTCACATCGAC+GGG 0.472021 7_2:-87623067 None:intergenic
TTTCCTCCGAATTAGTAATA+CGG 0.473180 7_2:-87621366 None:intergenic
TACATGGTCTTACGACTTTG+CGG 0.476001 7_2:+87623737 Msa1086940:CDS
TATGTGCTAGTACTAGCAAT+AGG 0.478760 7_2:+87621573 Msa1086940:intron
TCCGACTTCCCCAGAGCCTC+CGG 0.480691 7_2:-87622736 None:intergenic
CTCGAGGGCCAATCTCCGTC+TGG 0.480699 7_2:+87623230 Msa1086940:CDS
TCGTAGGTTCAAATCCTACT+TGG 0.483960 7_2:+87621326 Msa1086940:CDS
TGCCGGAAGGTTAAGGAAGT+TGG 0.485164 7_2:-87623693 None:intergenic
GAATAGGAGAGCACTCATCT+TGG 0.487596 7_2:+87622757 Msa1086940:CDS
ACAAGGAATTTCGCTACCTT+AGG 0.488888 7_2:+87623606 Msa1086940:CDS
GGCTCTGGGGAAGTCGGAAT+AGG 0.491163 7_2:+87622741 Msa1086940:CDS
CACGAAAGGCGTAACGATCT+GGG 0.491297 7_2:-87623565 None:intergenic
TCCCTAGCTATTCAAGGGAT+GGG 0.493688 7_2:+87622440 Msa1086940:intron
GAAGTTGGTGACCTGATGAC+AGG 0.495416 7_2:-87623678 None:intergenic
AGGTAGCGAAATTCCTTGTC+GGG 0.495901 7_2:-87623602 None:intergenic
ATTGCCTGATCGAATTGATC+AGG 0.499380 7_2:+87622521 Msa1086940:CDS
CGTAGGTTCAAATCCTACTT+GGG 0.501561 7_2:+87621327 Msa1086940:CDS
TTCCTTAACCTTCCGGCACT+GGG 0.504342 7_2:+87623698 Msa1086940:CDS
GCGACCGAAGCCCCGGTGAA+CGG 0.505900 7_2:-87623648 None:intergenic
CACTGTCTCGGAGAGAGGCT+CGG 0.506062 7_2:-87623542 None:intergenic
GATGTCGGCTCTTCGCCACC+TGG 0.508239 7_2:-87623029 None:intergenic
GCTGTGATACCGGAGGCTCT+GGG 0.508804 7_2:+87622727 Msa1086940:CDS
CTCAGGTAGACAGTTTCTAT+GGG 0.510655 7_2:-87623301 None:intergenic
CCCTCGAGTGCAAAGGCAGA+AGG 0.511073 7_2:-87623215 None:intergenic
AAGGTAGCGAAATTCCTTGT+CGG 0.511527 7_2:-87623603 None:intergenic
TAACGATCTGGGCACTGTCT+CGG 0.513539 7_2:-87623554 None:intergenic
ATGACCTGATCAATTCGATC+AGG 0.514268 7_2:-87622525 None:intergenic
GATCGTTACGCCTTTCGTGC+GGG 0.516913 7_2:+87623569 Msa1086940:CDS
TGACCTGATGACAGGGAAGC+CGG 0.518242 7_2:-87623670 None:intergenic
CCTTAGGACCGTTATAGTTA+CGG 0.519214 7_2:+87623622 Msa1086940:CDS
GTCATTACTATGTTTGCTCT+CGG 0.523048 7_2:-87621642 None:intergenic
GAGGCGTGCAAAGGTTTCCT+CGG 0.526013 7_2:-87623254 None:intergenic
AGGCGTGCAAAGGTTTCCTC+GGG 0.527025 7_2:-87623253 None:intergenic
ATCCCTAGCTATTCAAGGGA+TGG 0.529273 7_2:+87622439 Msa1086940:intron
CCCGTCGATGTGAGCTCTTG+GGG 0.534121 7_2:+87623067 Msa1086940:CDS
GATTTGAACCTACGACCAAT+CGG 0.536173 7_2:-87621318 None:intergenic
CCTTGGTCTGTACTGGCACA+AGG 0.538614 7_2:+87623330 Msa1086940:CDS
ATTAAAGCGGTACGTGAGCT+GGG 0.539036 7_2:-87622970 None:intergenic
CTGGGCACTGTCTCGGAGAG+AGG 0.542198 7_2:-87623547 None:intergenic
GCTGTTAACCGATTGGTCGT+AGG 0.543509 7_2:+87621310 Msa1086940:CDS
AAGGTTTGGCACCTCGATGT+CGG 0.545826 7_2:-87623044 None:intergenic
TGGGCGAACAGCCCAACCCT+TGG 0.548090 7_2:+87622992 Msa1086940:CDS
TAGCTCAGTGGTAGAGCGGT+CGG 0.552439 7_2:+87621288 Msa1086940:CDS
TCCCCAAGAGCTCACATCGA+CGG 0.555494 7_2:-87623068 None:intergenic
AAAGTCGTAAGACCATGTAT+GGG 0.556989 7_2:-87623733 None:intergenic
GCCAATCTCCGTCTGGCCCG+AGG 0.562208 7_2:+87623237 Msa1086940:CDS
TGGAGCTGTAGTATGTTCCA+AGG 0.564153 7_2:-87623009 None:intergenic
ACCGAAGCCCCGGTGAACGG+CGG 0.564471 7_2:-87623645 None:intergenic
AGATCGTTACGCCTTTCGTG+CGG 0.565799 7_2:+87623568 Msa1086940:CDS
ACCGGAGGCTCTGGGGAAGT+CGG 0.567230 7_2:+87622735 Msa1086940:CDS
GACGCCTGCCCAGTGCCGGA+AGG 0.568365 7_2:-87623706 None:intergenic
TATCACAGCCGAAACAGCGA+TGG 0.574058 7_2:-87622713 None:intergenic
CCGTAACTATAACGGTCCTA+AGG 0.574485 7_2:-87623622 None:intergenic
TTGGAACATACTACAGCTCC+AGG 0.579135 7_2:+87623011 Msa1086940:CDS
CCCTAGCTATTCAAGGGATG+GGG 0.580411 7_2:+87622441 Msa1086940:intron
TAAGTTCCGACCCGCACGAA+AGG 0.581321 7_2:-87623579 None:intergenic
GTCTACCTGAGACTGTCCCT+TGG 0.586612 7_2:+87623313 Msa1086940:CDS
AAGGTAACGGAGGCGTGCAA+AGG 0.595805 7_2:-87623263 None:intergenic
CCTCGAGTGCAAAGGCAGAA+GGG 0.595841 7_2:-87623214 None:intergenic
TTCCATCCCTAGCTATTCAA+GGG 0.597126 7_2:+87622435 Msa1086940:intron
AAAGGTTTCCTCGGGCCAGA+CGG 0.597813 7_2:-87623245 None:intergenic
ATTCCGTATTACTAATTCGG+AGG 0.598230 7_2:+87621363 Msa1086940:CDS
CTGTGATACCGGAGGCTCTG+GGG 0.598997 7_2:+87622728 Msa1086940:CDS
AACGGCGGCCGTAACTATAA+CGG 0.599287 7_2:-87623630 None:intergenic
GTTACGCCTTTCGTGCGGGT+CGG 0.605304 7_2:+87623573 Msa1086940:CDS
GCGGTCGGCTGTTAACCGAT+TGG 0.606049 7_2:+87621303 Msa1086940:CDS
TGGGGCGTAGGCCTCCCAAA+AGG 0.606913 7_2:-87623282 None:intergenic
GTTCGGTCCATATCCGGTGT+GGG 0.608178 7_2:-87622928 None:intergenic
AAGAGCTCACATCGACGGGA+AGG 0.613365 7_2:-87623063 None:intergenic
AGTTCGGTCCATATCCGGTG+TGG 0.618273 7_2:-87622929 None:intergenic
GGGCTGTTCGCCCATTAAAG+CGG 0.619701 7_2:-87622983 None:intergenic
ATCACAGCCGAAACAGCGAT+GGG 0.621115 7_2:-87622712 None:intergenic
AAGTCGTAAGACCATGTATG+GGG 0.621859 7_2:-87623732 None:intergenic
AGACAGTTTCTATGGGGCGT+AGG 0.622986 7_2:-87623294 None:intergenic
ATAGGAGAGCACTCATCTTG+GGG 0.623240 7_2:+87622759 Msa1086940:CDS
AAGTTGGTGACCTGATGACA+GGG 0.627282 7_2:-87623677 None:intergenic
TATTCAAGGGATGGGGACAG+AGG 0.629665 7_2:+87622448 Msa1086940:CDS
GTAGGCCTCCCAAAAGGTAA+CGG 0.632223 7_2:-87623276 None:intergenic
GGAGCTGTAGTATGTTCCAA+GGG 0.640199 7_2:-87623008 None:intergenic
TAGACATGTCTGTGAAGATG+CGG 0.645281 7_2:-87623514 None:intergenic
CCTTGTGCCAGTACAGACCA+AGG 0.645647 7_2:-87623330 None:intergenic
TCAGTAGCTCAGTGGTAGAG+CGG 0.647191 7_2:+87621284 Msa1086940:CDS
GCTCTACCACTGAGCTACTG+AGG 0.654077 7_2:-87621282 None:intergenic
GGGTCGGAACTTACCCGACA+AGG 0.655880 7_2:+87623589 Msa1086940:CDS
CAATGCTCTAACGCCCACAC+CGG 0.666176 7_2:+87622915 Msa1086940:CDS
AGATTGGCCCTCGAGTGCAA+AGG 0.670375 7_2:-87623222 None:intergenic
GGCCTCCCAAAAGGTAACGG+AGG 0.683463 7_2:-87623273 None:intergenic
AGTCGTAAGACCATGTATGG+GGG 0.686647 7_2:-87623731 None:intergenic
CTTGTGCCAGTACAGACCAA+GGG 0.693537 7_2:-87623329 None:intergenic
GTAGGTTCAAATCCTACTTG+GGG 0.695756 7_2:+87621328 Msa1086940:CDS
GTGGGCGTTAGAGCATTGAG+AGG 0.697492 7_2:-87622910 None:intergenic
GTGGCGAAGAGCCGACATCG+AGG 0.704477 7_2:+87623033 Msa1086940:CDS
CAGTCATCAATTCTCCCGAG+AGG 0.712015 7_2:+87621612 Msa1086940:CDS
TGTTTCGGCTGTGATACCGG+AGG 0.717886 7_2:+87622720 Msa1086940:CDS
GTTGTTCCTCAGTAGCTCAG+TGG 0.718220 7_2:+87621276 Msa1086940:CDS
TCAGGTAGACAGTTTCTATG+GGG 0.720720 7_2:-87623300 None:intergenic
ACTGAGCTACTGAGGAACAA+CGG 0.725337 7_2:-87621274 None:intergenic
GAGCAAACATAGTAATGACG+AGG 0.726995 7_2:+87621646 Msa1086940:CDS
GTTACGGCCGCCGTTCACCG+GGG 0.732311 7_2:+87623638 Msa1086940:CDS
GAACATACTACAGCTCCAGG+TGG 0.771466 7_2:+87623014 Msa1086940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCATTTTGTTAATTCTT+CGG - chr7_2:87621717-87621736 None:intergenic 15.0%
!! ATGTAATAGAAACAATGAAA+GGG - chr7_2:87621452-87621471 None:intergenic 20.0%
!! AATGTAATAGAAACAATGAA+AGG - chr7_2:87621453-87621472 None:intergenic 20.0%
!!! TTCATTTTAAGAACGAAATA+AGG + chr7_2:87621759-87621778 Msa1086940:intron 20.0%
! TTCATTCCGTATTACTAATT+CGG + chr7_2:87621360-87621379 Msa1086940:CDS 25.0%
! TGTAATAGAAACAATGAAAG+GGG - chr7_2:87621451-87621470 None:intergenic 25.0%
! GAAAATGTTTAGTAGAACAA+AGG - chr7_2:87621552-87621571 None:intergenic 25.0%
! ATAAGAAAATCAACTAGGAT+CGG - chr7_2:87621847-87621866 None:intergenic 25.0%
! TTTGGATAAGAAAATCAACT+AGG - chr7_2:87621852-87621871 None:intergenic 25.0%
! TTATTAAGCTAAAATCTCTG+GGG - chr7_2:87622030-87622049 None:intergenic 25.0%
! CTTATTAAGCTAAAATCTCT+GGG - chr7_2:87622031-87622050 None:intergenic 25.0%
! TCTTATTAAGCTAAAATCTC+TGG - chr7_2:87622032-87622051 None:intergenic 25.0%
!!! AGAGATTTGATTTGAGAATT+GGG + chr7_2:87622106-87622125 Msa1086940:intron 25.0%
! AATAGGGAATAAGAATGAAA+AGG - chr7_2:87622148-87622167 None:intergenic 25.0%
! AGTTGAACAATCAAAATAGA+TGG + chr7_2:87622496-87622515 Msa1086940:CDS 25.0%
TTTCCTCCGAATTAGTAATA+CGG - chr7_2:87621369-87621388 None:intergenic 30.0%
GTAATAGAAACAATGAAAGG+GGG - chr7_2:87621450-87621469 None:intergenic 30.0%
! TTTTGTTAATTCTTCGGCTT+GGG - chr7_2:87621711-87621730 None:intergenic 30.0%
! ATTTTGTTAATTCTTCGGCT+TGG - chr7_2:87621712-87621731 None:intergenic 30.0%
TAAGAAAATCAACTAGGATC+GGG - chr7_2:87621846-87621865 None:intergenic 30.0%
CACAATTATTATAGAGAGAG+AGG - chr7_2:87622065-87622084 None:intergenic 30.0%
!! GAGAGATTTGATTTGAGAAT+TGG + chr7_2:87622105-87622124 Msa1086940:intron 30.0%
!! GAGATTTGATTTGAGAATTG+GGG + chr7_2:87622107-87622126 Msa1086940:intron 30.0%
! TTCCCTATTGCTATTGAAAA+AGG + chr7_2:87622159-87622178 Msa1086940:intron 30.0%
! TCCCTATTGCTATTGAAAAA+GGG + chr7_2:87622160-87622179 Msa1086940:intron 30.0%
!!! TCCCTTTTTCAATAGCAATA+GGG - chr7_2:87622164-87622183 None:intergenic 30.0%
!!! TTCCCTTTTTCAATAGCAAT+AGG - chr7_2:87622165-87622184 None:intergenic 30.0%
! TGTTAACCTTTTTATCATCC+TGG + chr7_2:87622198-87622217 Msa1086940:intron 30.0%
CACCTATCGTTAATGAAAAA+CGG + chr7_2:87622620-87622639 Msa1086940:intron 30.0%
!!! AGTTTTGAGAATTCAAGAGA+AGG - chr7_2:87622661-87622680 None:intergenic 30.0%
AACGGATAAAAGTTACTCTA+GGG - chr7_2:87623109-87623128 None:intergenic 30.0%
GAAAAAAAATCTCCCCAAGT+AGG - chr7_2:87621343-87621362 None:intergenic 35.0%
ATTCCGTATTACTAATTCGG+AGG + chr7_2:87621363-87621382 Msa1086940:CDS 35.0%
AAGTTAAGCAGTATGTAACG+TGG + chr7_2:87621420-87621439 Msa1086940:intron 35.0%
TATGTGCTAGTACTAGCAAT+AGG + chr7_2:87621573-87621592 Msa1086940:intron 35.0%
GTCATTACTATGTTTGCTCT+CGG - chr7_2:87621645-87621664 None:intergenic 35.0%
! TTTGTTAATTCTTCGGCTTG+GGG - chr7_2:87621710-87621729 None:intergenic 35.0%
TATAATAATTGTGCGTTCCG+AGG + chr7_2:87622072-87622091 Msa1086940:intron 35.0%
TAGAGTTTAACCACCAAGTT+CGG + chr7_2:87622270-87622289 Msa1086940:intron 35.0%
! CATATTGACTAGTCAATGTC+AGG + chr7_2:87622371-87622390 Msa1086940:intron 35.0%
!!! AGCCGTTTTTCATTAACGAT+AGG - chr7_2:87622625-87622644 None:intergenic 35.0%
! AAAGTTACTCTAGGGATAAC+AGG - chr7_2:87623101-87623120 None:intergenic 35.0%
CAACGGATAAAAGTTACTCT+AGG - chr7_2:87623110-87623129 None:intergenic 35.0%
AAAGTCGTAAGACCATGTAT+GGG - chr7_2:87623736-87623755 None:intergenic 35.0%
GATTTGAACCTACGACCAAT+CGG - chr7_2:87621321-87621340 None:intergenic 40.0%
TCGTAGGTTCAAATCCTACT+TGG + chr7_2:87621326-87621345 Msa1086940:CDS 40.0%
CGTAGGTTCAAATCCTACTT+GGG + chr7_2:87621327-87621346 Msa1086940:CDS 40.0%
GTAGGTTCAAATCCTACTTG+GGG + chr7_2:87621328-87621347 Msa1086940:CDS 40.0%
ACCATCCTGTTCTGCAATAT+TGG + chr7_2:87621487-87621506 Msa1086940:intron 40.0%
TCCAATATTGCAGAACAGGA+TGG - chr7_2:87621491-87621510 None:intergenic 40.0%
AGTCTCCAATATTGCAGAAC+AGG - chr7_2:87621495-87621514 None:intergenic 40.0%
TCAATACCTAGGTGTAGGTT+GGG + chr7_2:87621520-87621539 Msa1086940:intron 40.0%
CTATGTTTGCTCTCGGTAAT+GGG - chr7_2:87621638-87621657 None:intergenic 40.0%
ACTATGTTTGCTCTCGGTAA+TGG - chr7_2:87621639-87621658 None:intergenic 40.0%
GAGCAAACATAGTAATGACG+AGG + chr7_2:87621646-87621665 Msa1086940:CDS 40.0%
! CAAAAAGGGGAAGGACTTTT+TGG - chr7_2:87621870-87621889 None:intergenic 40.0%
! TTGGTGGTTAAACTCTACTG+CGG - chr7_2:87622267-87622286 None:intergenic 40.0%
AGAGTTTAACCACCAAGTTC+GGG + chr7_2:87622271-87622290 Msa1086940:intron 40.0%
TCGTTCATGGTTCGATATTC+TGG - chr7_2:87622330-87622349 None:intergenic 40.0%
TCGAACCATGAACGAAGTAA+AGG + chr7_2:87622335-87622354 Msa1086940:intron 40.0%
TCATGCCTTTACTTCGTTCA+TGG - chr7_2:87622343-87622362 None:intergenic 40.0%
TTGAATAGCTAGGGATGGAA+GGG - chr7_2:87622435-87622454 None:intergenic 40.0%
TTCCATCCCTAGCTATTCAA+GGG + chr7_2:87622435-87622454 Msa1086940:intron 40.0%
ATTGCCTGATCGAATTGATC+AGG + chr7_2:87622521-87622540 Msa1086940:CDS 40.0%
ATGACCTGATCAATTCGATC+AGG - chr7_2:87622528-87622547 None:intergenic 40.0%
GATCAGGTCATGTAAGAACA+AGG + chr7_2:87622537-87622556 Msa1086940:intron 40.0%
AGAACAAGGTTCAAGTCTAC+CGG + chr7_2:87622551-87622570 Msa1086940:intron 40.0%
CATTAACGATAGGTGTCAAG+TGG - chr7_2:87622615-87622634 None:intergenic 40.0%
GAGAATTCAAGAGAAGGTCA+CGG - chr7_2:87622655-87622674 None:intergenic 40.0%
!! AATAGGAGAGCACTCATCTT+GGG + chr7_2:87622758-87622777 Msa1086940:CDS 40.0%
TGTAGTATGTTCCAAGGGTT+GGG - chr7_2:87623006-87623025 None:intergenic 40.0%
! AACTTTTATCCGTTGAGCGA+CGG + chr7_2:87623115-87623134 Msa1086940:intron 40.0%
TCAGGTAGACAGTTTCTATG+GGG - chr7_2:87623303-87623322 None:intergenic 40.0%
CTCAGGTAGACAGTTTCTAT+GGG - chr7_2:87623304-87623323 None:intergenic 40.0%
TCTCAGGTAGACAGTTTCTA+TGG - chr7_2:87623305-87623324 None:intergenic 40.0%
TAGACATGTCTGTGAAGATG+CGG - chr7_2:87623517-87623536 None:intergenic 40.0%
AAGGTAGCGAAATTCCTTGT+CGG - chr7_2:87623606-87623625 None:intergenic 40.0%
ACAAGGAATTTCGCTACCTT+AGG + chr7_2:87623606-87623625 Msa1086940:CDS 40.0%
CCTTAGGACCGTTATAGTTA+CGG + chr7_2:87623622-87623641 Msa1086940:CDS 40.0%
AAGTCGTAAGACCATGTATG+GGG - chr7_2:87623735-87623754 None:intergenic 40.0%
CAAAGTCGTAAGACCATGTA+TGG - chr7_2:87623737-87623756 None:intergenic 40.0%
! TACATGGTCTTACGACTTTG+CGG + chr7_2:87623737-87623756 Msa1086940:CDS 40.0%
ACTGAGCTACTGAGGAACAA+CGG - chr7_2:87621277-87621296 None:intergenic 45.0%
TCTGCAATATTGGAGACTCG+CGG + chr7_2:87621497-87621516 Msa1086940:intron 45.0%
GTCAATACCTAGGTGTAGGT+TGG + chr7_2:87621519-87621538 Msa1086940:intron 45.0%
CAATACCTAGGTGTAGGTTG+GGG + chr7_2:87621521-87621540 Msa1086940:intron 45.0%
! AAAGTCCTTCCCCTTTTTGC+CGG + chr7_2:87621871-87621890 Msa1086940:intron 45.0%
GAACAGATCTAGTGGAGACA+GGG - chr7_2:87621976-87621995 None:intergenic 45.0%
TCTCCACTAGATCTGTTCCT+CGG + chr7_2:87621978-87621997 Msa1086940:intron 45.0%
GGAGAGGAAAGGTTTCTTGT+AGG - chr7_2:87622009-87622028 None:intergenic 45.0%
! AAAATCTCTGGGGAGAGGAA+AGG - chr7_2:87622020-87622039 None:intergenic 45.0%
! AAGCTAAAATCTCTGGGGAG+AGG - chr7_2:87622025-87622044 None:intergenic 45.0%
TTTAACCACCAAGTTCGGGA+TGG + chr7_2:87622275-87622294 Msa1086940:intron 45.0%
GTTCGATATTCTGGTGTCCT+AGG - chr7_2:87622321-87622340 None:intergenic 45.0%
GTCAGGTCCTAATTCTTGAC+TGG + chr7_2:87622388-87622407 Msa1086940:intron 45.0%
GTCCTAATTCTTGACTGGAG+AGG + chr7_2:87622393-87622412 Msa1086940:intron 45.0%
GTCCTCTCCAGTCAAGAATT+AGG - chr7_2:87622398-87622417 None:intergenic 45.0%
CTTGAATAGCTAGGGATGGA+AGG - chr7_2:87622436-87622455 None:intergenic 45.0%
CTTCCATCCCTAGCTATTCA+AGG + chr7_2:87622434-87622453 Msa1086940:intron 45.0%
ATCCCTTGAATAGCTAGGGA+TGG - chr7_2:87622440-87622459 None:intergenic 45.0%
ATCCCTAGCTATTCAAGGGA+TGG + chr7_2:87622439-87622458 Msa1086940:intron 45.0%
TCCCTAGCTATTCAAGGGAT+GGG + chr7_2:87622440-87622459 Msa1086940:intron 45.0%
TTCAAGTCTACCGGTCTGTT+AGG + chr7_2:87622560-87622579 Msa1086940:intron 45.0%
TGCAGTAATGTATGCAGCTG+AGG - chr7_2:87622589-87622608 None:intergenic 45.0%
!! GAATAGGAGAGCACTCATCT+TGG + chr7_2:87622757-87622776 Msa1086940:CDS 45.0%
!! ATAGGAGAGCACTCATCTTG+GGG + chr7_2:87622759-87622778 Msa1086940:CDS 45.0%
TTTACCGTTGGCACGATAAC+TGG + chr7_2:87622840-87622859 Msa1086940:intron 45.0%
ATTAAAGCGGTACGTGAGCT+GGG - chr7_2:87622973-87622992 None:intergenic 45.0%
AGCTCACGTACCGCTTTAAT+GGG + chr7_2:87622973-87622992 Msa1086940:CDS 45.0%
CTGTAGTATGTTCCAAGGGT+TGG - chr7_2:87623007-87623026 None:intergenic 45.0%
GGAGCTGTAGTATGTTCCAA+GGG - chr7_2:87623011-87623030 None:intergenic 45.0%
TGGAGCTGTAGTATGTTCCA+AGG - chr7_2:87623012-87623031 None:intergenic 45.0%
TTGGAACATACTACAGCTCC+AGG + chr7_2:87623011-87623030 Msa1086940:CDS 45.0%
!! GAATTCTAGCTCTTCCAGAG+TGG + chr7_2:87623356-87623375 Msa1086940:intron 45.0%
ATGAAGCTTCACTGTTCCCT+GGG - chr7_2:87623466-87623485 None:intergenic 45.0%
TATGAAGCTTCACTGTTCCC+TGG - chr7_2:87623467-87623486 None:intergenic 45.0%
AGGGAACAGTGAAGCTTCAT+AGG + chr7_2:87623466-87623485 Msa1086940:intron 45.0%
GGGAACAGTGAAGCTTCATA+GGG + chr7_2:87623467-87623486 Msa1086940:intron 45.0%
TTCATAGGGTCTTTCTGTCC+AGG + chr7_2:87623481-87623500 Msa1086940:intron 45.0%
AGGTAGCGAAATTCCTTGTC+GGG - chr7_2:87623605-87623624 None:intergenic 45.0%
CCGTAACTATAACGGTCCTA+AGG - chr7_2:87623625-87623644 None:intergenic 45.0%
!! AAGTTGGTGACCTGATGACA+GGG - chr7_2:87623680-87623699 None:intergenic 45.0%
CACCAACTTCCTTAACCTTC+CGG + chr7_2:87623691-87623710 Msa1086940:CDS 45.0%
AGTCGTAAGACCATGTATGG+GGG - chr7_2:87623734-87623753 None:intergenic 45.0%
! TTTGCGGAGACCTGTGTTTT+TGG + chr7_2:87623753-87623772 Msa1086940:CDS 45.0%
GTTGTTCCTCAGTAGCTCAG+TGG + chr7_2:87621276-87621295 Msa1086940:CDS 50.0%
TCAGTAGCTCAGTGGTAGAG+CGG + chr7_2:87621284-87621303 Msa1086940:CDS 50.0%
! GCTGTTAACCGATTGGTCGT+AGG + chr7_2:87621310-87621329 Msa1086940:CDS 50.0%
AGTATCCCCAACCTACACCT+AGG - chr7_2:87621529-87621548 None:intergenic 50.0%
CAGTCATCAATTCTCCCGAG+AGG + chr7_2:87621612-87621631 Msa1086940:CDS 50.0%
GGCTAGTGGAAGCAAAGCTA+TGG - chr7_2:87621825-87621844 None:intergenic 50.0%
! ATCAACTAGGATCGGGCTAG+TGG - chr7_2:87621839-87621858 None:intergenic 50.0%
!! TTCCCCTTTTTGCCGGTTGT+GGG + chr7_2:87621878-87621897 Msa1086940:intron 50.0%
GCTCTAATCCTCTGAGCTAC+AGG + chr7_2:87621945-87621964 Msa1086940:intron 50.0%
AGATCTAGTGGAGACAGGGT+GGG - chr7_2:87621972-87621991 None:intergenic 50.0%
GGAACAGATCTAGTGGAGAC+AGG - chr7_2:87621977-87621996 None:intergenic 50.0%
GTTTCTTGTAGGTTCCTCCG+AGG - chr7_2:87621998-87622017 None:intergenic 50.0%
ATCTCTCCCACTTCACACCT+CGG - chr7_2:87622092-87622111 None:intergenic 50.0%
TCGGCGCCAGGATGATAAAA+AGG - chr7_2:87622207-87622226 None:intergenic 50.0%
ACTGCGGTGACGATACTGTA+GGG - chr7_2:87622251-87622270 None:intergenic 50.0%
TACTGCGGTGACGATACTGT+AGG - chr7_2:87622252-87622271 None:intergenic 50.0%
ACACCAATCCATCCCGAACT+TGG - chr7_2:87622286-87622305 None:intergenic 50.0%
!! AAGTTCGGGATGGATTGGTG+TGG + chr7_2:87622285-87622304 Msa1086940:intron 50.0%
TTGACTGGAGAGGACACCAA+AGG + chr7_2:87622403-87622422 Msa1086940:intron 50.0%
CCCCATCCCTTGAATAGCTA+GGG - chr7_2:87622444-87622463 None:intergenic 50.0%
CCCTAGCTATTCAAGGGATG+GGG + chr7_2:87622441-87622460 Msa1086940:intron 50.0%
TCCCCATCCCTTGAATAGCT+AGG - chr7_2:87622445-87622464 None:intergenic 50.0%
TATTCAAGGGATGGGGACAG+AGG + chr7_2:87622448-87622467 Msa1086940:CDS 50.0%
CAGAGAACCCATCGCTGTTT+CGG + chr7_2:87622705-87622724 Msa1086940:CDS 50.0%
ATCACAGCCGAAACAGCGAT+GGG - chr7_2:87622715-87622734 None:intergenic 50.0%
TATCACAGCCGAAACAGCGA+TGG - chr7_2:87622716-87622735 None:intergenic 50.0%
TGTGCCAGTTATCGTGCCAA+CGG - chr7_2:87622847-87622866 None:intergenic 50.0%
TTTCCCTAGTACGAGAGGAC+CGG - chr7_2:87622887-87622906 None:intergenic 50.0%
GAGACAGTTCGGTCCATATC+CGG - chr7_2:87622937-87622956 None:intergenic 50.0%
CAGAACGTCGTGAGACAGTT+CGG - chr7_2:87622948-87622967 None:intergenic 50.0%
CATTAAAGCGGTACGTGAGC+TGG - chr7_2:87622974-87622993 None:intergenic 50.0%
CAGCTCACGTACCGCTTTAA+TGG + chr7_2:87622972-87622991 Msa1086940:CDS 50.0%
GAACATACTACAGCTCCAGG+TGG + chr7_2:87623014-87623033 Msa1086940:CDS 50.0%
AAGGTTTGGCACCTCGATGT+CGG - chr7_2:87623047-87623066 None:intergenic 50.0%
GTAGGCCTCCCAAAAGGTAA+CGG - chr7_2:87623279-87623298 None:intergenic 50.0%
AGACAGTTTCTATGGGGCGT+AGG - chr7_2:87623297-87623316 None:intergenic 50.0%
CTTGTGCCAGTACAGACCAA+GGG - chr7_2:87623332-87623351 None:intergenic 50.0%
CCATCAGTGAGATACCACTC+TGG - chr7_2:87623373-87623392 None:intergenic 50.0%
CCAGAGTGGTATCTCACTGA+TGG + chr7_2:87623370-87623389 Msa1086940:intron 50.0%
GCTTAGGTGGAAGGCAAAGA+AGG - chr7_2:87623418-87623437 None:intergenic 50.0%
AAAAGCCCAAAGCCAATCCC+AGG + chr7_2:87623446-87623465 Msa1086940:intron 50.0%
AAAGCCCAAAGCCAATCCCA+GGG + chr7_2:87623447-87623466 Msa1086940:intron 50.0%
!! TGTTCCCTGGGATTGGCTTT+GGG - chr7_2:87623454-87623473 None:intergenic 50.0%
! TAACGATCTGGGCACTGTCT+CGG - chr7_2:87623557-87623576 None:intergenic 50.0%
! CACGAAAGGCGTAACGATCT+GGG - chr7_2:87623568-87623587 None:intergenic 50.0%
AGATCGTTACGCCTTTCGTG+CGG + chr7_2:87623568-87623587 Msa1086940:CDS 50.0%
AACGGCGGCCGTAACTATAA+CGG - chr7_2:87623633-87623652 None:intergenic 50.0%
!! GAAGTTGGTGACCTGATGAC+AGG - chr7_2:87623681-87623700 None:intergenic 50.0%
TGCCGGAAGGTTAAGGAAGT+TGG - chr7_2:87623696-87623715 None:intergenic 50.0%
TTCCTTAACCTTCCGGCACT+GGG + chr7_2:87623698-87623717 Msa1086940:CDS 50.0%
GCTCTACCACTGAGCTACTG+AGG - chr7_2:87621285-87621304 None:intergenic 55.0%
TAGCTCAGTGGTAGAGCGGT+CGG + chr7_2:87621288-87621307 Msa1086940:CDS 55.0%
GAGACTCGCGGTCAATACCT+AGG + chr7_2:87621509-87621528 Msa1086940:intron 55.0%
CGCGGTCAATACCTAGGTGT+AGG + chr7_2:87621515-87621534 Msa1086940:intron 55.0%
CACAACCGGCAAAAAGGGGA+AGG - chr7_2:87621879-87621898 None:intergenic 55.0%
!! CTTCCCCTTTTTGCCGGTTG+TGG + chr7_2:87621877-87621896 Msa1086940:intron 55.0%
TCGCCCACAACCGGCAAAAA+GGG - chr7_2:87621884-87621903 None:intergenic 55.0%
GCTCAGAGGATTAGAGCACG+TGG - chr7_2:87621942-87621961 None:intergenic 55.0%
GATCTAGTGGAGACAGGGTG+GGG - chr7_2:87621971-87621990 None:intergenic 55.0%
CAGATCTAGTGGAGACAGGG+TGG - chr7_2:87621973-87621992 None:intergenic 55.0%
CCTCCGAGGAACAGATCTAG+TGG - chr7_2:87621984-87622003 None:intergenic 55.0%
CCACTAGATCTGTTCCTCGG+AGG + chr7_2:87621981-87622000 Msa1086940:intron 55.0%
TGCGTTCCGAGGTGTGAAGT+GGG + chr7_2:87622083-87622102 Msa1086940:intron 55.0%
GGTCCTGCGGGAAAATAGCT+CGG - chr7_2:87622226-87622245 None:intergenic 55.0%
ATACTGTAGGGGAGGTCCTG+CGG - chr7_2:87622239-87622258 None:intergenic 55.0%
CTGCGGTGACGATACTGTAG+GGG - chr7_2:87622250-87622269 None:intergenic 55.0%
CCAATCCATCCCGAACTTGG+TGG - chr7_2:87622283-87622302 None:intergenic 55.0%
CCACCAAGTTCGGGATGGAT+TGG + chr7_2:87622280-87622299 Msa1086940:intron 55.0%
TTCTGGTGTCCTAGGCGTAG+AGG - chr7_2:87622313-87622332 None:intergenic 55.0%
! AGGGATGGGGACAGAGGTTT+TGG + chr7_2:87622454-87622473 Msa1086940:CDS 55.0%
! GCTGAGGCATCCTAACAGAC+CGG - chr7_2:87622573-87622592 None:intergenic 55.0%
! TTCTTTTGCTCCATCCCCGC+AGG + chr7_2:87622680-87622699 Msa1086940:intron 55.0%
! TCTTTTGCTCCATCCCCGCA+GGG + chr7_2:87622681-87622700 Msa1086940:intron 55.0%
! CGCTGTTTCGGCTGTGATAC+CGG + chr7_2:87622717-87622736 Msa1086940:CDS 55.0%
TGTTTCGGCTGTGATACCGG+AGG + chr7_2:87622720-87622739 Msa1086940:CDS 55.0%
!! GAGAGCACTCATCTTGGGGT+GGG + chr7_2:87622763-87622782 Msa1086940:intron 55.0%
AAACGCTGGGTAGCCAAGTG+CGG - chr7_2:87622823-87622842 None:intergenic 55.0%
TCGTGCCAACGGTAAACGCT+GGG - chr7_2:87622836-87622855 None:intergenic 55.0%
ATCGTGCCAACGGTAAACGC+TGG - chr7_2:87622837-87622856 None:intergenic 55.0%
CACGATAACTGGCACACCAG+AGG + chr7_2:87622851-87622870 Msa1086940:intron 55.0%
TTCCCGGTCCTCTCGTACTA+GGG + chr7_2:87622881-87622900 Msa1086940:intron 55.0%
TTCCCTAGTACGAGAGGACC+GGG - chr7_2:87622886-87622905 None:intergenic 55.0%
GGTCCTCTCGTACTAGGGAA+AGG + chr7_2:87622886-87622905 Msa1086940:intron 55.0%
GGACCTTTCCCTAGTACGAG+AGG - chr7_2:87622892-87622911 None:intergenic 55.0%
!! GTGGGCGTTAGAGCATTGAG+AGG - chr7_2:87622913-87622932 None:intergenic 55.0%
CAATGCTCTAACGCCCACAC+CGG + chr7_2:87622915-87622934 Msa1086940:CDS 55.0%
TCTAACGCCCACACCGGATA+TGG + chr7_2:87622921-87622940 Msa1086940:CDS 55.0%
GTTCGGTCCATATCCGGTGT+GGG - chr7_2:87622931-87622950 None:intergenic 55.0%
AGTTCGGTCCATATCCGGTG+TGG - chr7_2:87622932-87622951 None:intergenic 55.0%
GGGCTGTTCGCCCATTAAAG+CGG - chr7_2:87622986-87623005 None:intergenic 55.0%
CTCACATCGACGGGAAGGTT+TGG - chr7_2:87623061-87623080 None:intergenic 55.0%
AAGAGCTCACATCGACGGGA+AGG - chr7_2:87623066-87623085 None:intergenic 55.0%
TTCCCGTCGATGTGAGCTCT+TGG + chr7_2:87623065-87623084 Msa1086940:CDS 55.0%
TCCCGTCGATGTGAGCTCTT+GGG + chr7_2:87623066-87623085 Msa1086940:CDS 55.0%
TCCCCAAGAGCTCACATCGA+CGG - chr7_2:87623071-87623090 None:intergenic 55.0%
AGTCGGCCTTAGTGATCCGA+CGG - chr7_2:87623156-87623175 None:intergenic 55.0%
CCTCGAGTGCAAAGGCAGAA+GGG - chr7_2:87623217-87623236 None:intergenic 55.0%
CCTTCTGCCTTTGCACTCGA+GGG + chr7_2:87623215-87623234 Msa1086940:CDS 55.0%
! AGATTGGCCCTCGAGTGCAA+AGG - chr7_2:87623225-87623244 None:intergenic 55.0%
AAAGGTTTCCTCGGGCCAGA+CGG - chr7_2:87623248-87623267 None:intergenic 55.0%
AGGCGTGCAAAGGTTTCCTC+GGG - chr7_2:87623256-87623275 None:intergenic 55.0%
GAGGCGTGCAAAGGTTTCCT+CGG - chr7_2:87623257-87623276 None:intergenic 55.0%
!! AAGGTAACGGAGGCGTGCAA+AGG - chr7_2:87623266-87623285 None:intergenic 55.0%
! TGCACGCCTCCGTTACCTTT+TGG + chr7_2:87623267-87623286 Msa1086940:CDS 55.0%
! GCACGCCTCCGTTACCTTTT+GGG + chr7_2:87623268-87623287 Msa1086940:CDS 55.0%
GTCTACCTGAGACTGTCCCT+TGG + chr7_2:87623313-87623332 Msa1086940:CDS 55.0%
ACAGACCAAGGGACAGTCTC+AGG - chr7_2:87623321-87623340 None:intergenic 55.0%
GACTGTCCCTTGGTCTGTAC+TGG + chr7_2:87623323-87623342 Msa1086940:CDS 55.0%
CCTTGTGCCAGTACAGACCA+AGG - chr7_2:87623333-87623352 None:intergenic 55.0%
! CCTTGGTCTGTACTGGCACA+AGG + chr7_2:87623330-87623349 Msa1086940:CDS 55.0%
AGGCAAAGAAGGCCTCCTTC+CGG - chr7_2:87623407-87623426 None:intergenic 55.0%
! CTTTTCCTGCGCAGCTTAGG+TGG - chr7_2:87623431-87623450 None:intergenic 55.0%
!! CTGTTCCCTGGGATTGGCTT+TGG - chr7_2:87623455-87623474 None:intergenic 55.0%
GCTTCACTGTTCCCTGGGAT+TGG - chr7_2:87623461-87623480 None:intergenic 55.0%
! GCACGAAAGGCGTAACGATC+TGG - chr7_2:87623569-87623588 None:intergenic 55.0%
GATCGTTACGCCTTTCGTGC+GGG + chr7_2:87623569-87623588 Msa1086940:CDS 55.0%
TAAGTTCCGACCCGCACGAA+AGG - chr7_2:87623582-87623601 None:intergenic 55.0%
TGACCTGATGACAGGGAAGC+CGG - chr7_2:87623673-87623692 None:intergenic 55.0%
CTTCCTTAACCTTCCGGCAC+TGG + chr7_2:87623697-87623716 Msa1086940:CDS 55.0%
GCGGTCGGCTGTTAACCGAT+TGG + chr7_2:87621303-87621322 Msa1086940:CDS 60.0%
!! CTCTCGGTAATGGGCCTCTC+GGG - chr7_2:87621629-87621648 None:intergenic 60.0%
!! GCTCTCGGTAATGGGCCTCT+CGG - chr7_2:87621630-87621649 None:intergenic 60.0%
CGCCCACAACCGGCAAAAAG+GGG - chr7_2:87621883-87621902 None:intergenic 60.0%
CTCGCCCACAACCGGCAAAA+AGG - chr7_2:87621885-87621904 None:intergenic 60.0%
!! CTTTTTGCCGGTTGTGGGCG+AGG + chr7_2:87621883-87621902 Msa1086940:intron 60.0%
AATCCCTCCTCGCCCACAAC+CGG - chr7_2:87621893-87621912 None:intergenic 60.0%
TGGCTACGAACCACGGTGTC+GGG - chr7_2:87621922-87621941 None:intergenic 60.0%
GTGGCTACGAACCACGGTGT+CGG - chr7_2:87621923-87621942 None:intergenic 60.0%
GAGCACGTGGCTACGAACCA+CGG - chr7_2:87621929-87621948 None:intergenic 60.0%
GTGCGTTCCGAGGTGTGAAG+TGG + chr7_2:87622082-87622101 Msa1086940:intron 60.0%
TACTGTAGGGGAGGTCCTGC+GGG - chr7_2:87622238-87622257 None:intergenic 60.0%
CGGTGACGATACTGTAGGGG+AGG - chr7_2:87622247-87622266 None:intergenic 60.0%
GGTGTGGTTCCTCTACGCCT+AGG + chr7_2:87622301-87622320 Msa1086940:intron 60.0%
GATGGAAGGGCAGAGGCCTT+TGG - chr7_2:87622422-87622441 None:intergenic 60.0%
AGCTAGGGATGGAAGGGCAG+AGG - chr7_2:87622429-87622448 None:intergenic 60.0%
! CTTTTGCTCCATCCCCGCAG+GGG + chr7_2:87622682-87622701 Msa1086940:intron 60.0%
GCTGTGATACCGGAGGCTCT+GGG + chr7_2:87622727-87622746 Msa1086940:CDS 60.0%
CTGTGATACCGGAGGCTCTG+GGG + chr7_2:87622728-87622747 Msa1086940:CDS 60.0%
!! GGCTCTGGGGAAGTCGGAAT+AGG + chr7_2:87622741-87622760 Msa1086940:CDS 60.0%
!! GGAGAGCACTCATCTTGGGG+TGG + chr7_2:87622762-87622781 Msa1086940:intron 60.0%
GCAGTTATCCGCTCCGCACT+TGG + chr7_2:87622807-87622826 Msa1086940:intron 60.0%
GGCTACCCAGCGTTTACCGT+TGG + chr7_2:87622828-87622847 Msa1086940:intron 60.0%
CTAGTACGAGAGGACCGGGA+AGG - chr7_2:87622882-87622901 None:intergenic 60.0%
CTTCCCGGTCCTCTCGTACT+AGG + chr7_2:87622880-87622899 Msa1086940:intron 60.0%
CCCCAAGAGCTCACATCGAC+GGG - chr7_2:87623070-87623089 None:intergenic 60.0%
CCCGTCGATGTGAGCTCTTG+GGG + chr7_2:87623067-87623086 Msa1086940:CDS 60.0%
TCGGCACCGTCGGATCACTA+AGG + chr7_2:87623147-87623166 Msa1086940:intron 60.0%
CGTCGAGCAGGGACGAAAGT+CGG - chr7_2:87623173-87623192 None:intergenic 60.0%
CGACTTTCGTCCCTGCTCGA+CGG + chr7_2:87623171-87623190 Msa1086940:intron 60.0%
GACTTTCGTCCCTGCTCGAC+GGG + chr7_2:87623172-87623191 Msa1086940:intron 60.0%
CCCTTCTGCCTTTGCACTCG+AGG + chr7_2:87623214-87623233 Msa1086940:CDS 60.0%
CCCTCGAGTGCAAAGGCAGA+AGG - chr7_2:87623218-87623237 None:intergenic 60.0%
! CGCCTCCGTTACCTTTTGGG+AGG + chr7_2:87623271-87623290 Msa1086940:CDS 60.0%
! GGCCTCCCAAAAGGTAACGG+AGG - chr7_2:87623276-87623295 None:intergenic 60.0%
AAAGAAGGCCTCCTTCCGGG+GGG - chr7_2:87623403-87623422 None:intergenic 60.0%
CAAAGAAGGCCTCCTTCCGG+GGG - chr7_2:87623404-87623423 None:intergenic 60.0%
GCAAAGAAGGCCTCCTTCCG+GGG - chr7_2:87623405-87623424 None:intergenic 60.0%
GGCAAAGAAGGCCTCCTTCC+GGG - chr7_2:87623406-87623425 None:intergenic 60.0%
TCCTGCGCAGCTTAGGTGGA+AGG - chr7_2:87623427-87623446 None:intergenic 60.0%
! GGGCTTTTCCTGCGCAGCTT+AGG - chr7_2:87623434-87623453 None:intergenic 60.0%
GGGTCTTTCTGTCCAGGTGC+AGG + chr7_2:87623487-87623506 Msa1086940:intron 60.0%
! AGATGCGGACTACCTGCACC+TGG - chr7_2:87623502-87623521 None:intergenic 60.0%
CACTGTCTCGGAGAGAGGCT+CGG - chr7_2:87623545-87623564 None:intergenic 60.0%
GTTACGCCTTTCGTGCGGGT+CGG + chr7_2:87623573-87623592 Msa1086940:CDS 60.0%
GGGTCGGAACTTACCCGACA+AGG + chr7_2:87623589-87623608 Msa1086940:CDS 60.0%
TAGTTACGGCCGCCGTTCAC+CGG + chr7_2:87623636-87623655 Msa1086940:CDS 60.0%
! TGCCCAGTGCCGGAAGGTTA+AGG - chr7_2:87623703-87623722 None:intergenic 60.0%
! TTAACCTTCCGGCACTGGGC+AGG + chr7_2:87623702-87623721 Msa1086940:CDS 60.0%
! TTTGCCGGTTGTGGGCGAGG+AGG + chr7_2:87621886-87621905 Msa1086940:intron 65.0%
! TTGCCGGTTGTGGGCGAGGA+GGG + chr7_2:87621887-87621906 Msa1086940:intron 65.0%
GATTCGAACCCCCGACACCG+TGG + chr7_2:87621909-87621928 Msa1086940:intron 65.0%
! GCTACGAACCACGGTGTCGG+GGG - chr7_2:87621920-87621939 None:intergenic 65.0%
! GGCTACGAACCACGGTGTCG+GGG - chr7_2:87621921-87621940 None:intergenic 65.0%
CGGGAAAATAGCTCGGCGCC+AGG - chr7_2:87622219-87622238 None:intergenic 65.0%
!! GCGCCGAGCTATTTTCCCGC+AGG + chr7_2:87622220-87622239 Msa1086940:intron 65.0%
ATGGGTTCTCTGCCCCTGCG+GGG - chr7_2:87622697-87622716 None:intergenic 65.0%
! GATGGGTTCTCTGCCCCTGC+GGG - chr7_2:87622698-87622717 None:intergenic 65.0%
! CGATGGGTTCTCTGCCCCTG+CGG - chr7_2:87622699-87622718 None:intergenic 65.0%
GGCTGTGATACCGGAGGCTC+TGG + chr7_2:87622726-87622745 Msa1086940:CDS 65.0%
!! ACCGGAGGCTCTGGGGAAGT+CGG + chr7_2:87622735-87622754 Msa1086940:CDS 65.0%
TCCGACTTCCCCAGAGCCTC+CGG - chr7_2:87622739-87622758 None:intergenic 65.0%
CTGGGTAGCCAAGTGCGGAG+CGG - chr7_2:87622818-87622837 None:intergenic 65.0%
! CACCAGAGGTGCGTCCTTCC+CGG + chr7_2:87622865-87622884 Msa1086940:intron 65.0%
TGGGCGAACAGCCCAACCCT+TGG + chr7_2:87622992-87623011 Msa1086940:CDS 65.0%
!! GATGTCGGCTCTTCGCCACC+TGG - chr7_2:87623032-87623051 None:intergenic 65.0%
GTGGCGAAGAGCCGACATCG+AGG + chr7_2:87623033-87623052 Msa1086940:CDS 65.0%
GTGGAAGGGCCGTCGCTCAA+CGG - chr7_2:87623127-87623146 None:intergenic 65.0%
TGAGCGACGGCCCTTCCACT+CGG + chr7_2:87623128-87623147 Msa1086940:intron 65.0%
! TCCGACGGTGCCGAGTGGAA+GGG - chr7_2:87623141-87623160 None:intergenic 65.0%
! ATCCGACGGTGCCGAGTGGA+AGG - chr7_2:87623142-87623161 None:intergenic 65.0%
! AGTGATCCGACGGTGCCGAG+TGG - chr7_2:87623146-87623165 None:intergenic 65.0%
TTTCGTCCCTGCTCGACGGG+TGG + chr7_2:87623175-87623194 Msa1086940:intron 65.0%
TTCGTCCCTGCTCGACGGGT+GGG + chr7_2:87623176-87623195 Msa1086940:intron 65.0%
CAAGACCCACCCGTCGAGCA+GGG - chr7_2:87623184-87623203 None:intergenic 65.0%
CTCGAGGGCCAATCTCCGTC+TGG + chr7_2:87623230-87623249 Msa1086940:CDS 65.0%
TCCTCGGGCCAGACGGAGAT+TGG - chr7_2:87623241-87623260 None:intergenic 65.0%
TGGGGCGTAGGCCTCCCAAA+AGG - chr7_2:87623285-87623304 None:intergenic 65.0%
AAGAAGGCCTCCTTCCGGGG+GGG - chr7_2:87623402-87623421 None:intergenic 65.0%
GCCTTCCACCTAAGCTGCGC+AGG + chr7_2:87623423-87623442 Msa1086940:intron 65.0%
! CTGGGCACTGTCTCGGAGAG+AGG - chr7_2:87623550-87623569 None:intergenic 65.0%
AGTTACGGCCGCCGTTCACC+GGG + chr7_2:87623637-87623656 Msa1086940:CDS 65.0%
!! TCGCCGGCTTCCCTGTCATC+AGG + chr7_2:87623667-87623686 Msa1086940:CDS 65.0%
CAGGCGTCAGCCCCCATACA+TGG + chr7_2:87623721-87623740 Msa1086940:CDS 65.0%
GGGTGGGGCCTGTAGCTCAG+AGG - chr7_2:87621956-87621975 None:intergenic 70.0%
GTTCTCTGCCCCTGCGGGGA+TGG - chr7_2:87622693-87622712 None:intergenic 70.0%
GACCGGGAAGGACGCACCTC+TGG - chr7_2:87622870-87622889 None:intergenic 70.0%
GCCCTTCCACTCGGCACCGT+CGG + chr7_2:87623137-87623156 Msa1086940:intron 70.0%
GCAAGACCCACCCGTCGAGC+AGG - chr7_2:87623185-87623204 None:intergenic 70.0%
GCCAATCTCCGTCTGGCCCG+AGG + chr7_2:87623237-87623256 Msa1086940:CDS 70.0%
ACTGATGGCTCGAGCCCCCC+CGG + chr7_2:87623385-87623404 Msa1086940:intron 70.0%
GTTACGGCCGCCGTTCACCG+GGG + chr7_2:87623638-87623657 Msa1086940:CDS 70.0%
ACCGAAGCCCCGGTGAACGG+CGG - chr7_2:87623648-87623667 None:intergenic 70.0%
GCGACCGAAGCCCCGGTGAA+CGG - chr7_2:87623651-87623670 None:intergenic 70.0%
TTCACCGGGGCTTCGGTCGC+CGG + chr7_2:87623651-87623670 Msa1086940:CDS 70.0%
ATGGCTCGAGCCCCCCCGGA+AGG + chr7_2:87623389-87623408 Msa1086940:intron 75.0%
GCCGCCGTTCACCGGGGCTT+CGG + chr7_2:87623644-87623663 Msa1086940:CDS 75.0%
GAAGCCGGCGACCGAAGCCC+CGG - chr7_2:87623658-87623677 None:intergenic 75.0%
! GACGCCTGCCCAGTGCCGGA+AGG - chr7_2:87623709-87623728 None:intergenic 75.0%
GGCTGACGCCTGCCCAGTGC+CGG - chr7_2:87623713-87623732 None:intergenic 75.0%
! GCTCGAGCCCCCCCGGAAGG+AGG + chr7_2:87623392-87623411 Msa1086940:intron 80.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 87621250 87623778 87621250 ID=Msa1086940;Name=Msa1086940
chr7_2 mRNA 87621250 87623778 87621250 ID=Msa1086940-mRNA-1;Parent=Msa1086940;Name=Msa1086940-mRNA-1;_AED=0.53;_eAED=0.75;_QI=0|0|0|0.42|1|1|7|0|354
chr7_2 exon 87621250 87621389 87621250 ID=Msa1086940-mRNA-1:exon:23913;Parent=Msa1086940-mRNA-1
chr7_2 exon 87621583 87621700 87621583 ID=Msa1086940-mRNA-1:exon:23914;Parent=Msa1086940-mRNA-1
chr7_2 exon 87622447 87622542 87622447 ID=Msa1086940-mRNA-1:exon:23915;Parent=Msa1086940-mRNA-1
chr7_2 exon 87622702 87622780 87622702 ID=Msa1086940-mRNA-1:exon:23916;Parent=Msa1086940-mRNA-1
chr7_2 exon 87622902 87623112 87622902 ID=Msa1086940-mRNA-1:exon:23917;Parent=Msa1086940-mRNA-1
chr7_2 exon 87623207 87623351 87623207 ID=Msa1086940-mRNA-1:exon:23918;Parent=Msa1086940-mRNA-1
chr7_2 exon 87623503 87623778 87623503 ID=Msa1086940-mRNA-1:exon:23919;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87621250 87621389 87621250 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87621583 87621700 87621583 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87622447 87622542 87622447 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87622702 87622780 87622702 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87622902 87623112 87622902 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87623207 87623351 87623207 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
chr7_2 CDS 87623503 87623778 87623503 ID=Msa1086940-mRNA-1:cds;Parent=Msa1086940-mRNA-1
Gene Sequence

>Msa1086940

ATGGAACTCTATGAGATAGAATTACCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCAAATCCTACTTGGGGAGATTTTTTTTCATTCCGTATTACTAATTCGGAGGAAAATACTAGCAATAGGAAGTGCATCTTTGATGCAGTCATCAATTCTCCCGAGAGGCCCATTACCGAGAGCAAACATAGTAATGACGAGGAACGCATTTTTGCTATGCTACTTTGCTCTGCTCTATTCAAGGGATGGGGACAGAGGTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATCAAAATAGATGGCGATTGCCTGATCGAATTGATCAGGGGCAGAGAACCCATCGCTGTTTCGGCTGTGATACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCTCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGATCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTACTGGCACAAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAA
Protein sequence

>Msa1086940

MELYEIELPLFLSSSVVERSAVNRLVVGSNPTWGDFFSFRITNSEENTSNRKCIFDAVINSPERPITESKHSNDEERIFAMLLCSALFKGWGQRFWFFHVVKELNNQNRWRLPDRIDQGQRTHRCFGCDTGGSGEVGIGEHSSWGKGPLNALTPTPDMDRTVSRRSEPSSRTALMGEQPNPWNILQLQVAKSRHRGAKPSRRCELLGKISLLSLDQAPFCLCTRGPISVWPEETFARLRYLLGGLRPIETVYLRLSLGLYWHKVQVVRIFTDMSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLPCHQVTNFLNLPALGRRQPPYMVLRLCGDLCFW*