AlfalfaGEDB | Msa0879080

M. sativa cultivar zhongmu-4 / Msa0879080

KEGG: K10801
GO: GO:0000700 GO:0000785 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003696 GO:0003824 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006220 GO:0006244 GO:0006259 GO:0006281 GO:0006284 GO:0006285 GO:0006304 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008263 GO:0009056 GO:0009058 GO:0009117 GO:0009166 GO:0009219 GO:0009223 GO:0009262 GO:0009264 GO:0009314 GO:0009394 GO:0009628 GO:0009987 GO:0016604 GO:0016607 GO:0016787 GO:0016788 GO:0016798 GO:0016799 GO:0018130 GO:0019104 GO:0019438 GO:0019439 GO:0019637 GO:0019692 GO:0031974 GO:0031981 GO:0033554 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045008 GO:0046386 GO:0046434 GO:0046483 GO:0046700 GO:0050896 GO:0051716 GO:0055086 GO:0070013 GO:0071704 GO:0072527 GO:0072529 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1990837
PFAM: PF00730.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879080	XP_024630443.1	67.314	309	41	4	126	425	25	282	3.17e-130	387

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879080	sp\|Q0IGK1\|MBD4L_ARATH	34.507	426	192	12	12	421	88	442	5.63e-55	191

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879080	A0A072TJT5	67.314	309	41	4	126	425	25	282	1.51e-130	387

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0007990	Msa0879080	0.820887	5.409490e-53	-8.615850e-47
Msa0012940	Msa0879080	0.812295	4.556108e-51	-8.615850e-47
Msa0027320	Msa0879080	0.817690	2.892738e-52	-8.615850e-47
Msa0035120	Msa0879080	0.821202	4.576600e-53	-8.615850e-47
Msa0036130	Msa0879080	0.806440	8.215878e-50	-8.615850e-47
Msa0037160	Msa0879080	0.806726	7.152809e-50	-8.615850e-47
Msa0057590	Msa0879080	0.800319	1.523594e-48	-8.615850e-47
Msa0103250	Msa0879080	0.816595	5.100369e-52	-8.615850e-47
Msa0106620	Msa0879080	0.800888	1.166819e-48	-8.615850e-47
Msa0118000	Msa0879080	0.813727	2.210519e-51	-8.615850e-47
Msa0620620	Msa0879080	0.825510	4.505783e-54	-8.615850e-47
Msa0658590	Msa0879080	0.816919	4.313686e-52	-8.615850e-47
Msa0679290	Msa0879080	-0.804515	2.081790e-49	-8.615850e-47
Msa0679700	Msa0879080	0.804437	2.161116e-49	-8.615850e-47
Msa0685760	Msa0879080	0.805016	1.635888e-49	-8.615850e-47
Msa0705190	Msa0879080	0.803372	3.597283e-49	-8.615850e-47
Msa0826760	Msa0879080	0.828492	8.725733e-55	-8.615850e-47
Msa0830390	Msa0879080	0.801661	8.105186e-49	-8.615850e-47
Msa0149300	Msa0879080	0.821857	3.231059e-53	-8.615850e-47
Msa0177210	Msa0879080	0.803179	3.944823e-49	-8.615850e-47
Msa0188150	Msa0879080	0.804898	1.731750e-49	-8.615850e-47
Msa0188350	Msa0879080	0.800032	1.743068e-48	-8.615850e-47
Msa0197520	Msa0879080	0.809705	1.658160e-50	-8.615850e-47
Msa0197780	Msa0879080	0.803261	3.793797e-49	-8.615850e-47
Msa0389910	Msa0879080	0.809790	1.590016e-50	-8.615850e-47
Msa0392200	Msa0879080	0.813106	3.027577e-51	-8.615850e-47
Msa0408300	Msa0879080	0.807286	5.443372e-50	-8.615850e-47
Msa0420590	Msa0879080	-0.807107	5.940601e-50	-8.615850e-47
Msa0420650	Msa0879080	-0.803490	3.400913e-49	-8.615850e-47
Msa0428050	Msa0879080	0.815235	1.025549e-51	-8.615850e-47
Msa0435690	Msa0879080	0.815948	7.117836e-52	-8.615850e-47
Msa0450400	Msa0879080	-0.803227	3.855871e-49	-8.615850e-47
Msa0271530	Msa0879080	0.812595	3.918273e-51	-8.615850e-47
Msa0317970	Msa0879080	0.801116	1.048129e-48	-8.615850e-47
Msa0322900	Msa0879080	0.800968	1.123407e-48	-8.615850e-47
Msa0516120	Msa0879080	0.810643	1.040786e-50	-8.615850e-47
Msa0517090	Msa0879080	0.834187	3.464108e-56	-8.615850e-47
Msa0518960	Msa0879080	0.801376	9.270654e-49	-8.615850e-47
Msa0521670	Msa0879080	0.822470	2.328450e-53	-8.615850e-47
Msa0532980	Msa0879080	0.838997	2.061907e-57	-8.615850e-47
Msa0532990	Msa0879080	0.803141	4.016479e-49	-8.615850e-47
Msa0548150	Msa0879080	0.815865	7.425175e-52	-8.615850e-47
Msa0581690	Msa0879080	0.812520	4.067661e-51	-8.615850e-47
Msa0844390	Msa0879080	0.801275	9.721367e-49	-8.615850e-47
Msa0879080	Msa0880040	0.803026	4.241792e-49	-8.615850e-47
Msa0879080	Msa0936390	0.803108	4.079619e-49	-8.615850e-47
Msa0879080	Msa0944660	0.834013	3.830177e-56	-8.615850e-47
Msa0879080	Msa0947530	-0.806176	9.339802e-50	-8.615850e-47
Msa0879080	Msa1038080	0.802427	5.640075e-49	-8.615850e-47
Msa0879080	Msa1080640	0.806361	8.537564e-50	-8.615850e-47
Msa0879080	Msa1082290	0.808016	3.808967e-50	-8.615850e-47
Msa0879080	Msa1095650	0.809437	1.892773e-50	-8.615850e-47
Msa0879080	Msa1127590	0.803179	3.944823e-49	-8.615850e-47
Msa0879080	Msa1135890	0.833876	4.145487e-56	-8.615850e-47
Msa0879080	Msa1201640	0.807189	5.708146e-50	-8.615850e-47
Msa0879080	Msa1218450	0.803517	3.356424e-49	-8.615850e-47
Msa0879080	Msa1219000	0.814418	1.556214e-51	-8.615850e-47
Msa0879080	Msa1225100	0.802053	6.733836e-49	-8.615850e-47
Msa0879080	Msa1226470	0.811492	6.813943e-51	-8.615850e-47
Msa0879080	Msa1298370	0.800578	1.349700e-48	-8.615850e-47
Msa0879080	Msa1329870	0.800934	1.141665e-48	-8.615850e-47
Msa0879080	Msa1332760	0.802412	5.679390e-49	-8.615850e-47
Msa0879080	Msa1348650	-0.805426	1.342904e-49	-8.615850e-47
Msa0879080	Msa1349520	0.818947	1.502046e-52	-8.615850e-47
Msa0879080	Msa1358670	0.816596	5.096871e-52	-8.615850e-47
Msa0879080	Msa1365600	0.909533	5.127334e-82	-8.615850e-47
Msa0879080	Msa1381480	0.819617	1.056949e-52	-8.615850e-47
Msa0879080	Msa1382790	0.806317	8.722167e-50	-8.615850e-47
Msa0879080	Msa1405220	0.802615	5.158183e-49	-8.615850e-47
Msa0879080	Msa1408010	0.905490	4.064625e-80	-8.615850e-47
Msa0879080	Msa1440310	0.815153	1.069893e-51	-8.615850e-47
Msa0879080	Msa1447180	0.807336	5.312153e-50	-8.615850e-47
Msa0879080	Msa1457160	0.803710	3.060803e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879080	MtrunA17_Chr5g0422001	67.314	309	41	4	126	425	25	282	2.91e-134	387
Msa0879080	MtrunA17_Chr5g0421951	66.557	305	37	6	126	421	30	278	3.65e-126	366
Msa0879080	MtrunA17_Chr5g0421951	59.155	71	23	4	1	70	1	66	4.13e-11	63.5
Msa0879080	MtrunA17_Chr6g0461801	69.565	161	25	4	126	275	30	177	1.02e-61	199
Msa0879080	MtrunA17_Chr6g0461801	61.429	70	21	4	1	70	1	64	4.00e-12	65.5
Msa0879080	MtrunA17_Chr6g0465351	87.500	64	8	0	276	339	4	67	4.30e-33	120
Msa0879080	MtrunA17_Chr6g0458841	44.954	109	34	3	130	226	1	95	2.29e-14	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0879080	AT3G07930.3	34.507	426	192	12	12	421	88	442	5.72e-56	191
Msa0879080	AT3G07930.4	36.615	325	135	7	99	421	71	326	2.67e-52	178
Msa0879080	AT3G07930.2	31.429	280	152	11	12	275	88	343	1.77e-16	80.9
Msa0879080	AT3G07930.1	31.273	275	149	11	12	270	88	338	6.38e-15	76.3

Find 100 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAAACACCGGATAATAAT+TGG	0.173506	6_1:-20635591	Msa0879080:CDS
TTGCTACAAACATTGGATTT+TGG	0.185344	6_1:-20631590	Msa0879080:three_prime_UTR
ATAGTATATATTTCCTTTAA+TGG	0.193423	6_1:-20631762	Msa0879080:three_prime_UTR
AGGAAATAGAAGAGGTAATA+AGG	0.220049	6_1:-20633821	Msa0879080:CDS
TCTTCAACTTTCTGAAAATA+AGG	0.234853	6_1:+20636084	None:intergenic
CCGCAGCAGTCGACCATTAA+AGG	0.260845	6_1:+20631749	None:intergenic
CGAGAGTCATTGAAAATCTT+AGG	0.262380	6_1:+20635703	None:intergenic
ATATTCTTATCTAGCGGATT+TGG	0.271351	6_1:-20632941	Msa0879080:CDS
TCTTCAACTTTCTGAAAATA+AGG	0.272553	6_1:+20635856	None:intergenic
TCTTCAACTTTCTGAAAATA+AGG	0.272553	6_1:+20635913	None:intergenic
TCTTCAACTTTCTGAAAATA+AGG	0.272553	6_1:+20635970	None:intergenic
TTGAAGATTTAGAACAGTTT+AGG	0.299387	6_1:-20635783	Msa0879080:CDS
ATCACAAGCTGAACGAATAT+TGG	0.299436	6_1:-20631871	Msa0879080:CDS
CTCTTATTCTGCAGGCGGTT+TGG	0.309125	6_1:+20632868	None:intergenic
TCTTCAACTTCCTGAAAATA+AGG	0.315866	6_1:+20636027	None:intergenic
GCAACAATTAAAATACATAT+TGG	0.348086	6_1:+20631677	None:intergenic
AATGCTTACCGATGGGATAA+AGG	0.380168	6_1:-20632914	Msa0879080:CDS
AAGGGGAGTGGCGGAGGTTG+TGG	0.394988	6_1:-20632989	Msa0879080:CDS
GAAGAGGTAATAAGGACATT+AGG	0.402181	6_1:-20633813	Msa0879080:CDS
ACCGATGGGATAAAGGTTGC+AGG	0.404792	6_1:-20632907	Msa0879080:CDS
TGCATACAAGTTTCTGCGTC+TGG	0.405102	6_1:+20633855	None:intergenic
TAAGGAGACACAACCCTCTC+TGG	0.411809	6_1:+20636102	None:intergenic
TAAGGAGACACGACCCTTTG+TGG	0.442932	6_1:+20635931	None:intergenic
TAAGGAGACACGACCCTTTG+TGG	0.442932	6_1:+20635988	None:intergenic
TAAGGAGACACGACCCTTTG+TGG	0.442932	6_1:+20636045	None:intergenic
CGCACTGTATTTATCTACAT+TGG	0.449291	6_1:-20631802	Msa0879080:three_prime_UTR
CATCTATCAGCCTTAAGAAA+AGG	0.450995	6_1:+20635631	None:intergenic
ATGGTCGACTGCTGCGGTGG+AGG	0.460972	6_1:-20631743	Msa0879080:three_prime_UTR
GAAAACACCGGATAATAATT+GGG	0.469834	6_1:-20635590	Msa0879080:CDS
GAATTTCCTTCGCAAAAGAA+AGG	0.473593	6_1:-20631849	Msa0879080:CDS
ATGTGCAAGGGGAGTGGCGG+AGG	0.474312	6_1:-20632995	Msa0879080:intron
CAATCACCCTCCATGGATCA+TGG	0.476838	6_1:+20635509	None:intergenic
GAACCGCACTCAAGGAAAAC+AGG	0.477107	6_1:-20635470	Msa0879080:intron
TTTCAGTAAGTATGCGTACA+AGG	0.478351	6_1:-20636226	Msa0879080:CDS
GAAAGTTGAAGAGTGTAAAG+TGG	0.483269	6_1:-20635845	Msa0879080:CDS
GAAAGTTGAAGAGTGTAAAG+TGG	0.483269	6_1:-20635902	Msa0879080:CDS
GAAAGTTGAAGAGTGTAAAG+TGG	0.483269	6_1:-20635959	Msa0879080:CDS
CAAAGCTCTAACATATATGT+TGG	0.487159	6_1:-20631621	Msa0879080:three_prime_UTR
CATTAGGTCTTCAAGTGAAA+AGG	0.489628	6_1:-20633797	Msa0879080:CDS
GGATACATTGCTACAAACAT+TGG	0.489639	6_1:-20631597	Msa0879080:three_prime_UTR
CAAACCGCCTGCAGAATAAG+AGG	0.490364	6_1:-20632867	Msa0879080:intron
CATGGAAATGAAACTCTTGA+AGG	0.492533	6_1:+20635527	None:intergenic
TTCTGCAGGCGGTTTGGACA+AGG	0.494279	6_1:+20632874	None:intergenic
AGTTTCATTTCCATGATCCA+TGG	0.498865	6_1:-20635519	Msa0879080:CDS
TAGAAAGAGTGTTGTTGAGG+TGG	0.504482	6_1:-20636193	Msa0879080:CDS
GAAAGTTGAAGAATGTAAAG+TGG	0.513159	6_1:-20636073	Msa0879080:CDS
TCCTGCAACCTTTATCCCAT+CGG	0.514411	6_1:+20632906	None:intergenic
AGGTGGATTCTTGTCATGCT+AGG	0.519427	6_1:-20636176	Msa0879080:CDS
TGGTCGACTGCTGCGGTGGA+GGG	0.524228	6_1:-20631742	Msa0879080:three_prime_UTR
GGATTCTTGTCATGCTAGGA+AGG	0.538385	6_1:-20636172	Msa0879080:CDS
CCTTTAATGGTCGACTGCTG+CGG	0.542735	6_1:-20631749	Msa0879080:three_prime_UTR
GGAGGCACCCAATTATTATC+CGG	0.546937	6_1:+20635583	None:intergenic
GGAAGTTGAAGAGTGTAAAG+TGG	0.547408	6_1:-20636016	Msa0879080:CDS
ACAATCACCTCTTATTCTGC+AGG	0.548259	6_1:+20632860	None:intergenic
TGTACGCAAACTCATTGTAA+TGG	0.548351	6_1:+20636259	None:intergenic
AGCTCTAACATATATGTTGG+AGG	0.550645	6_1:-20631618	Msa0879080:three_prime_UTR
TGGGATAAAGGTTGCAGGAA+CGG	0.551303	6_1:-20632902	Msa0879080:CDS
TTGGAGAAAATGCTTACCGA+TGG	0.551660	6_1:-20632922	Msa0879080:CDS
GATGTAGAGAGGCTTACAAA+AGG	0.552426	6_1:-20635612	Msa0879080:CDS
AAGAAGAGAGGAAATAGAAG+AGG	0.558019	6_1:-20633829	Msa0879080:CDS
CATATAGCAATCACCCTCCA+TGG	0.559914	6_1:+20635502	None:intergenic
TAAAGTGGAGCATCCACAAA+GGG	0.564359	6_1:-20636058	Msa0879080:CDS
AATGCTATGTGCAAGGGGAG+TGG	0.564586	6_1:-20633001	Msa0879080:intron
GAAAGTCGAAGAGTGTAAAG+TGG	0.568900	6_1:-20636130	Msa0879080:CDS
TAAAGTGGAGCATCCACAAA+GGG	0.571179	6_1:-20635944	Msa0879080:CDS
TAAAGTGGAGCATCCACAAA+GGG	0.571179	6_1:-20636001	Msa0879080:CDS
ATACTCTTGAACCGCACTCA+AGG	0.580789	6_1:-20635478	Msa0879080:CDS
TGGAGAAAATGCTTACCGAT+GGG	0.583840	6_1:-20632921	Msa0879080:CDS
TTAATGGTCGACTGCTGCGG+TGG	0.587168	6_1:-20631746	Msa0879080:three_prime_UTR
TCTTAGAAAGAGTGTTGTTG+AGG	0.587653	6_1:-20636196	Msa0879080:CDS
GAACGAGACACGACCCTCTG+TGG	0.587983	6_1:+20635817	None:intergenic
GTGAATACTTAACTGAGACT+TGG	0.590610	6_1:-20633749	Msa0879080:CDS
TCATTTCCATGATCCATGGA+GGG	0.594814	6_1:-20635515	Msa0879080:CDS
ACTGTGCAGTTCAGTAACAT+AGG	0.599692	6_1:+20633725	None:intergenic
TCTGCAGGCGGTTTGGACAA+GGG	0.601494	6_1:+20632875	None:intergenic
TCGTTCAGCTTGTGATCATG+TGG	0.604250	6_1:+20631878	None:intergenic
GACCGAAAGTTGAAAAGCCT+AGG	0.611563	6_1:-20635675	Msa0879080:CDS
GCTATGTGCAAGGGGAGTGG+CGG	0.611636	6_1:-20632998	Msa0879080:intron
TAAGGAGACACGACCCTCTG+TGG	0.614957	6_1:+20635874	None:intergenic
TAAAGTGGAGCATCCAGAGA+GGG	0.616844	6_1:-20636115	Msa0879080:CDS
TAAGGCTGATAGATGTAGAG+AGG	0.618140	6_1:-20635623	Msa0879080:CDS
TTCAGTAAGTATGCGTACAA+GGG	0.620982	6_1:-20636225	Msa0879080:CDS
TTGTACGCATACTTACTGAA+AGG	0.621933	6_1:+20636228	None:intergenic
ATCACCTCTTATTCTGCAGG+CGG	0.622676	6_1:+20632863	None:intergenic
TTCATTTCCATGATCCATGG+AGG	0.624082	6_1:-20635516	Msa0879080:CDS
AAATCTATATTCTTATCTAG+CGG	0.630621	6_1:-20632947	Msa0879080:CDS
GAGTCATTGAAAATCTTAGG+AGG	0.634133	6_1:+20635706	None:intergenic
GTAAAGTGGAGCATCCAGAG+AGG	0.637261	6_1:-20636116	Msa0879080:CDS
TAAAGTGGAGCATCCACAGA+GGG	0.638542	6_1:-20635830	Msa0879080:CDS
TAAAGTGGAGCATCCACAGA+GGG	0.638542	6_1:-20635887	Msa0879080:CDS
GTTACTGAACTGCACAGTGT+TGG	0.647308	6_1:-20633720	Msa0879080:CDS
ACGAGAGGACGTGTAGAACG+TGG	0.649226	6_1:+20635562	None:intergenic
TTGTATGCAAGTAAGAAGAG+AGG	0.658799	6_1:-20633841	Msa0879080:CDS
GGCTTACAAAAGGAAAACAC+CGG	0.659818	6_1:-20635602	Msa0879080:CDS
GTAAAGTGGAGCATCCACAA+AGG	0.670334	6_1:-20636059	Msa0879080:CDS
GTAAAGTGGAGCATCCACAA+AGG	0.695425	6_1:-20635945	Msa0879080:CDS
GTAAAGTGGAGCATCCACAA+AGG	0.695425	6_1:-20636002	Msa0879080:CDS
GTAAAGTGGAGCATCCACAG+AGG	0.713286	6_1:-20635831	Msa0879080:CDS
GTAAAGTGGAGCATCCACAG+AGG	0.713286	6_1:-20635888	Msa0879080:CDS
AGAGGACGTGTAGAACGTGG+AGG	0.750477	6_1:+20635565	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTGATTATAATAATTTGA+GGG	+	chr6_1:20634252-20634271	None:intergenic	10.0%
!!	TCATGTATTAATAATAATTT+GGG	-	chr6_1:20635012-20635031	Msa0879080:intron	10.0%
!!!	CTTTTTTATAAAAATATTTG+AGG	+	chr6_1:20635643-20635662	None:intergenic	10.0%
!!	AATAAAAGAATATACTAAAG+AGG	-	chr6_1:20633424-20633443	Msa0879080:intron	15.0%
!!	CAATTGATTATAATAATTTG+AGG	+	chr6_1:20634253-20634272	None:intergenic	15.0%
!!	GTCATGTATTAATAATAATT+TGG	-	chr6_1:20635011-20635030	Msa0879080:intron	15.0%
!!!	AATTAATAGTATGACTTTTT+TGG	-	chr6_1:20635399-20635418	Msa0879080:intron	15.0%
!!!	TTTTATAAAAAAGTAGACTT+AGG	-	chr6_1:20635650-20635669	Msa0879080:CDS	15.0%
!!	ATAGTATATATTTCCTTTAA+TGG	-	chr6_1:20636010-20636029	Msa0879080:CDS	15.0%
!!!	AAAAACTAAACCTTTTCTTA+AGG	-	chr6_1:20632131-20632150	Msa0879080:intron	20.0%
!!!	ATTTGAAATTTATCTTCTTG+AGG	-	chr6_1:20632537-20632556	Msa0879080:intron	20.0%
!!	CGAAATTATGATTAAGAATT+TGG	-	chr6_1:20632569-20632588	Msa0879080:intron	20.0%
!!!	AGTCTTTAAAAAAGAGAAAA+AGG	+	chr6_1:20632769-20632788	None:intergenic	20.0%
!!!	ACAATTAATATTTTACATGC+TGG	+	chr6_1:20632909-20632928	None:intergenic	20.0%
!!	TCGTAATTTAGAAATAAAGA+AGG	-	chr6_1:20632933-20632952	Msa0879080:CDS	20.0%
!!	ATAAAGAAGGATAATGAATT+AGG	-	chr6_1:20632946-20632965	Msa0879080:CDS	20.0%
!!!	ATGGAATTTTTTGTAATAAC+TGG	-	chr6_1:20633113-20633132	Msa0879080:intron	20.0%
!!	ATAATGTTAATGTAGTTACA+AGG	-	chr6_1:20633304-20633323	Msa0879080:intron	20.0%
!!	GATCAATTGGATTAATAATT+AGG	+	chr6_1:20633336-20633355	None:intergenic	20.0%
!!	GTTTGAGAATATGTTAAATT+AGG	-	chr6_1:20633714-20633733	Msa0879080:intron	20.0%
!!	GAATATGTTAAATTAGGAAA+CGG	-	chr6_1:20633720-20633739	Msa0879080:CDS	20.0%
!!	AATATGTTAAATTAGGAAAC+GGG	-	chr6_1:20633721-20633740	Msa0879080:CDS	20.0%
!!!	TCACTTTTAAAGTTACTTTT+AGG	-	chr6_1:20634118-20634137	Msa0879080:intron	20.0%
!!!	TTTTATGCTATGTGTAATTT+TGG	-	chr6_1:20634169-20634188	Msa0879080:intron	20.0%
!!	AAATCACTAAAAAAAACTAG+AGG	+	chr6_1:20634197-20634216	None:intergenic	20.0%
!!!	TAAAAACAAAAAACCCTTTT+TGG	-	chr6_1:20634354-20634373	Msa0879080:intron	20.0%
!!!	TAAGAATATAGATTTTCAGA+GGG	+	chr6_1:20634820-20634839	None:intergenic	20.0%
!!!	ATAAGAATATAGATTTTCAG+AGG	+	chr6_1:20634821-20634840	None:intergenic	20.0%
!!	AAATCTATATTCTTATCTAG+CGG	-	chr6_1:20634825-20634844	Msa0879080:intron	20.0%
!!	ATTATTGAGTGTTATGTTAT+TGG	-	chr6_1:20634958-20634977	Msa0879080:intron	20.0%
!!	TATATGCAATTAACGAAATA+TGG	+	chr6_1:20635705-20635724	None:intergenic	20.0%
!!!	TTCTTTACATTGATTGATAT+CGG	-	chr6_1:20635799-20635818	Msa0879080:CDS	20.0%
!!	GCAACAATTAAAATACATAT+TGG	+	chr6_1:20636098-20636117	None:intergenic	20.0%
!!	TCTTCAACTTTCTGAAAATA+AGG	+	chr6_1:20631691-20631710	None:intergenic	25.0%
!!	TCTTCAACTTTCTGAAAATA+AGG	+	chr6_1:20631691-20631710	None:intergenic	25.0%
!!	TCTTCAACTTTCTGAAAATA+AGG	+	chr6_1:20631691-20631710	None:intergenic	25.0%
!!	TCTTCAACTTTCTGAAAATA+AGG	+	chr6_1:20631691-20631710	None:intergenic	25.0%
!!	TTGAAGATTTAGAACAGTTT+AGG	-	chr6_1:20631989-20632008	Msa0879080:intron	25.0%
!	AACATCAGCATAAAATACAA+GGG	+	chr6_1:20632358-20632377	None:intergenic	25.0%
!	AAACATCAGCATAAAATACA+AGG	+	chr6_1:20632359-20632378	None:intergenic	25.0%
!	TACAGTATCATAATAAAGTC+AGG	+	chr6_1:20632392-20632411	None:intergenic	25.0%
!!!	ACTACTATTGTTTGTTGTTT+TGG	-	chr6_1:20632467-20632486	Msa0879080:intron	25.0%
!	TGAATTCAAAATGACTCAAA+AGG	+	chr6_1:20632719-20632738	None:intergenic	25.0%
!!	TTTTCTACAGAACTACAAAA+AGG	+	chr6_1:20632882-20632901	None:intergenic	25.0%
!	AAAAGAATATACTAAAGAGG+AGG	-	chr6_1:20633427-20633446	Msa0879080:intron	25.0%
!	AAGTTATACAATTTCTGTTG+AGG	-	chr6_1:20633454-20633473	Msa0879080:intron	25.0%
!!!	TTCTATTATAAGCTTGTTGA+TGG	-	chr6_1:20633543-20633562	Msa0879080:intron	25.0%
!!!	ATGTACCATTTGCAATTTTT+TGG	-	chr6_1:20633593-20633612	Msa0879080:intron	25.0%
!	ATAAGAAGCTAACTCAAAAT+AGG	+	chr6_1:20633847-20633866	None:intergenic	25.0%
!	ACATAGCATAAAATACTAGA+GGG	+	chr6_1:20634162-20634181	None:intergenic	25.0%
!	AAGAGATGAAAAACTATGAA+TGG	+	chr6_1:20634224-20634243	None:intergenic	25.0%
!	CTTGATCTTCCAAAAATAAA+GGG	+	chr6_1:20634659-20634678	None:intergenic	25.0%
!	TCTTGATCTTCCAAAAATAA+AGG	+	chr6_1:20634660-20634679	None:intergenic	25.0%
!	ATAATCAAAATGAGTGAATC+TGG	-	chr6_1:20635044-20635063	Msa0879080:intron	25.0%
!	ATAAAACAGATAGCATTACT+CGG	+	chr6_1:20635439-20635458	None:intergenic	25.0%
!	TAGCAACGAAAATTGTAATT+AGG	-	chr6_1:20635735-20635754	Msa0879080:CDS	25.0%
!!	ATCGGTTATATCTTTTAATC+AGG	-	chr6_1:20635817-20635836	Msa0879080:CDS	25.0%
!!	ATATCTTTTAATCAGGTATG+CGG	-	chr6_1:20635824-20635843	Msa0879080:CDS	25.0%
!!!	ATGTATTTTAATTGTTGCAG+TGG	-	chr6_1:20636100-20636119	Msa0879080:CDS	25.0%
	GAAAGTTGAAGAATGTAAAG+TGG	-	chr6_1:20631699-20631718	Msa0879080:three_prime_UTR	30.0%
	TCTTCAACTTCCTGAAAATA+AGG	+	chr6_1:20631748-20631767	None:intergenic	30.0%
!	GTTTTTCTTTCTGATTTCCT+AGG	+	chr6_1:20632117-20632136	None:intergenic	30.0%
	GAAAACACCGGATAATAATT+GGG	-	chr6_1:20632182-20632201	Msa0879080:intron	30.0%
!	TTATGCTGATGTTTTACTGT+CGG	-	chr6_1:20632365-20632384	Msa0879080:intron	30.0%
!!	GTTTCTGATTTGCTTTACAA+TGG	-	chr6_1:20632441-20632460	Msa0879080:intron	30.0%
	TCTAAACTGTTAATCGTCTT+CGG	-	chr6_1:20632493-20632512	Msa0879080:intron	30.0%
	TAAAACTCAACTGATGCAAA+CGG	+	chr6_1:20632655-20632674	None:intergenic	30.0%
!!!	GGAACTGTTTTGAAAATGTT+GGG	+	chr6_1:20633007-20633026	None:intergenic	30.0%
!	TTTTCAAAACAGTTCCGTTT+TGG	-	chr6_1:20633011-20633030	Msa0879080:intron	30.0%
	TAATGGCAGCATAGTATTAA+TGG	-	chr6_1:20633037-20633056	Msa0879080:intron	30.0%
	AAATCCAAAACTGAACTGTT+CGG	+	chr6_1:20633075-20633094	None:intergenic	30.0%
	GTGTCAACATCTAACATTAT+TGG	-	chr6_1:20633168-20633187	Msa0879080:intron	30.0%
	AAGCTTATAATAGAAGCAAC+AGG	+	chr6_1:20633538-20633557	None:intergenic	30.0%
	TCACTCCAAAAAATTGCAAA+TGG	+	chr6_1:20633601-20633620	None:intergenic	30.0%
	GATTTGAGTAATGTCAAATG+AGG	-	chr6_1:20633681-20633700	Msa0879080:intron	30.0%
!!!	CTTCTTATTTTGCAAAATGC+AGG	-	chr6_1:20633859-20633878	Msa0879080:CDS	30.0%
	AGGAAATAGAAGAGGTAATA+AGG	-	chr6_1:20633951-20633970	Msa0879080:intron	30.0%
	CACATAGCATAAAATACTAG+AGG	+	chr6_1:20634163-20634182	None:intergenic	30.0%
!	AAACAAAAAACCCTTTTTGG+CGG	-	chr6_1:20634357-20634376	Msa0879080:intron	30.0%
!	AGAAGATGCTTAATGCTTTT+TGG	-	chr6_1:20634380-20634399	Msa0879080:intron	30.0%
	TTTGGTTGCTAGAATATTGA+AGG	-	chr6_1:20634561-20634580	Msa0879080:intron	30.0%
!!!	CACATCTATCCCTTTATTTT+TGG	-	chr6_1:20634647-20634666	Msa0879080:intron	30.0%
	ATCAAGATGACATAGTGATA+TGG	-	chr6_1:20634673-20634692	Msa0879080:intron	30.0%
	ATATGGAATGCAGAATTACA+TGG	-	chr6_1:20634690-20634709	Msa0879080:intron	30.0%
	TTACATGGTAAATACACAGT+AGG	-	chr6_1:20634705-20634724	Msa0879080:intron	30.0%
	AAAAGAAATGCTATGTGCAA+GGG	-	chr6_1:20634765-20634784	Msa0879080:intron	30.0%
!!	ATATTCTTATCTAGCGGATT+TGG	-	chr6_1:20634831-20634850	Msa0879080:intron	30.0%
!	TGATGATGAGTTATAAATGC+TGG	-	chr6_1:20635272-20635291	Msa0879080:intron	30.0%
!!	AGTTTGTTAAGGTTCTTACA+GGG	-	chr6_1:20635296-20635315	Msa0879080:intron	30.0%
	AAATATTTGAGGATCGACAA+TGG	+	chr6_1:20635632-20635651	None:intergenic	30.0%
	TTTATGTGAAACACAACTGA+TGG	-	chr6_1:20635674-20635693	Msa0879080:CDS	30.0%
!	TAAACCACTGCAACAATTTT+TGG	+	chr6_1:20636129-20636148	None:intergenic	30.0%
!	CAAAGCTCTAACATATATGT+TGG	-	chr6_1:20636151-20636170	Msa0879080:CDS	30.0%
!	TTGCTACAAACATTGGATTT+TGG	-	chr6_1:20636182-20636201	Msa0879080:CDS	30.0%
	TGTACGCAAACTCATTGTAA+TGG	+	chr6_1:20631516-20631535	None:intergenic	35.0%
	TTGTACGCATACTTACTGAA+AGG	+	chr6_1:20631547-20631566	None:intergenic	35.0%
	TTTCAGTAAGTATGCGTACA+AGG	-	chr6_1:20631546-20631565	Msa0879080:three_prime_UTR	35.0%
	TTCAGTAAGTATGCGTACAA+GGG	-	chr6_1:20631547-20631566	Msa0879080:three_prime_UTR	35.0%
!!	TCTTAGAAAGAGTGTTGTTG+AGG	-	chr6_1:20631576-20631595	Msa0879080:three_prime_UTR	35.0%
!	GAAAGTTGAAGAGTGTAAAG+TGG	-	chr6_1:20631813-20631832	Msa0879080:three_prime_UTR	35.0%
!	GAAAGTTGAAGAGTGTAAAG+TGG	-	chr6_1:20631813-20631832	Msa0879080:three_prime_UTR	35.0%
!	GAAAGTTGAAGAGTGTAAAG+TGG	-	chr6_1:20631813-20631832	Msa0879080:three_prime_UTR	35.0%
	GAGTCATTGAAAATCTTAGG+AGG	+	chr6_1:20632069-20632088	None:intergenic	35.0%
	CGAGAGTCATTGAAAATCTT+AGG	+	chr6_1:20632072-20632091	None:intergenic	35.0%
!	TTCCTAGGCTTTTCAACTTT+CGG	+	chr6_1:20632102-20632121	None:intergenic	35.0%
	CATCTATCAGCCTTAAGAAA+AGG	+	chr6_1:20632144-20632163	None:intergenic	35.0%
	GGAAAACACCGGATAATAAT+TGG	-	chr6_1:20632181-20632200	Msa0879080:intron	35.0%
	CATGGAAATGAAACTCTTGA+AGG	+	chr6_1:20632248-20632267	None:intergenic	35.0%
	AGTTTCATTTCCATGATCCA+TGG	-	chr6_1:20632253-20632272	Msa0879080:intron	35.0%
	TGATGACTACATGTTGAAAG+AGG	-	chr6_1:20632623-20632642	Msa0879080:intron	35.0%
!!!	CGGAACTGTTTTGAAAATGT+TGG	+	chr6_1:20633008-20633027	None:intergenic	35.0%
!!	CAGTTCCGTTTTGGATATAA+TGG	-	chr6_1:20633020-20633039	Msa0879080:intron	35.0%
	TGCTGCCATTATATCCAAAA+CGG	+	chr6_1:20633028-20633047	None:intergenic	35.0%
!	TATTCCGAACAGTTCAGTTT+TGG	-	chr6_1:20633068-20633087	Msa0879080:intron	35.0%
!!!	CAGTTCAGTTTTGGATTTAG+TGG	-	chr6_1:20633077-20633096	Msa0879080:intron	35.0%
	TAGTGGCAGCTTACAATTAA+TGG	-	chr6_1:20633094-20633113	Msa0879080:intron	35.0%
	TGTTACAGTATGTCAAACAG+AGG	-	chr6_1:20633227-20633246	Msa0879080:intron	35.0%
	TGGATATGTGTGGTAGTTAT+GGG	+	chr6_1:20633377-20633396	None:intergenic	35.0%
	ATGGATATGTGTGGTAGTTA+TGG	+	chr6_1:20633378-20633397	None:intergenic	35.0%
	GATCATGTATAGGACAGTTA+TGG	+	chr6_1:20633397-20633416	None:intergenic	35.0%
	ATTCGAGTGTGATCATGTAT+AGG	+	chr6_1:20633407-20633426	None:intergenic	35.0%
	TAATAGAAGCAACAGGAAGA+TGG	+	chr6_1:20633531-20633550	None:intergenic	35.0%
	TTGAGTAATGTCAAATGAGG+TGG	-	chr6_1:20633684-20633703	Msa0879080:intron	35.0%
	TTGTATGCAAGTAAGAAGAG+AGG	-	chr6_1:20633931-20633950	Msa0879080:intron	35.0%
	AAGAAGAGAGGAAATAGAAG+AGG	-	chr6_1:20633943-20633962	Msa0879080:intron	35.0%
	GAAGAGGTAATAAGGACATT+AGG	-	chr6_1:20633959-20633978	Msa0879080:intron	35.0%
	CATTAGGTCTTCAAGTGAAA+AGG	-	chr6_1:20633975-20633994	Msa0879080:intron	35.0%
	GTGAATACTTAACTGAGACT+TGG	-	chr6_1:20634023-20634042	Msa0879080:intron	35.0%
!!	AGATGCTTAATGCTTTTTGG+TGG	-	chr6_1:20634383-20634402	Msa0879080:intron	35.0%
!!	GATGCTTAATGCTTTTTGGT+GGG	-	chr6_1:20634384-20634403	Msa0879080:intron	35.0%
!!	ATGCTTAATGCTTTTTGGTG+GGG	-	chr6_1:20634385-20634404	Msa0879080:intron	35.0%
	CTAGAATATTGAAGGCTAGA+TGG	-	chr6_1:20634569-20634588	Msa0879080:intron	35.0%
	ATGTGATAGCTTCAGACATA+GGG	+	chr6_1:20634632-20634651	None:intergenic	35.0%
	ATGGTAAATACACAGTAGGT+CGG	-	chr6_1:20634709-20634728	Msa0879080:intron	35.0%
	GAAAAGAAATGCTATGTGCA+AGG	-	chr6_1:20634764-20634783	Msa0879080:intron	35.0%
	AAAGAAATGCTATGTGCAAG+GGG	-	chr6_1:20634766-20634785	Msa0879080:intron	35.0%
!	ATAGATTTTCAGAGGGACAT+GGG	+	chr6_1:20634813-20634832	None:intergenic	35.0%
!	TATAGATTTTCAGAGGGACA+TGG	+	chr6_1:20634814-20634833	None:intergenic	35.0%
	ACATGTATAATCAGCTTGCA+AGG	+	chr6_1:20635218-20635237	None:intergenic	35.0%
!!	TTGGCTTTTTCCGTAATGAA+GGG	-	chr6_1:20635248-20635267	Msa0879080:intron	35.0%
!!	TAAATGCTGGCAGTTTGTTA+AGG	-	chr6_1:20635285-20635304	Msa0879080:intron	35.0%
!!	CAGTTTGTTAAGGTTCTTAC+AGG	-	chr6_1:20635295-20635314	Msa0879080:intron	35.0%
!!	TATCTTGACTTGTGACTTTG+AGG	-	chr6_1:20635513-20635532	Msa0879080:CDS	35.0%
!	TTGAGGTTAAGTTTGTTCAG+AGG	-	chr6_1:20635530-20635549	Msa0879080:CDS	35.0%
!	GCATATGCGATATTTTGTAC+AGG	-	chr6_1:20635852-20635871	Msa0879080:CDS	35.0%
!	GATATTTTGTACAGGCAAGT+GGG	-	chr6_1:20635860-20635879	Msa0879080:CDS	35.0%
	ATCACAAGCTGAACGAATAT+TGG	-	chr6_1:20635901-20635920	Msa0879080:CDS	35.0%
	GAATTTCCTTCGCAAAAGAA+AGG	-	chr6_1:20635923-20635942	Msa0879080:CDS	35.0%
!	ATGTATCCTTTCTTTTGCGA+AGG	+	chr6_1:20635932-20635951	None:intergenic	35.0%
	CGCACTGTATTTATCTACAT+TGG	-	chr6_1:20635970-20635989	Msa0879080:CDS	35.0%
	GTTTCCAAAAATTGTTGCAG+TGG	-	chr6_1:20636122-20636141	Msa0879080:CDS	35.0%
!	AGCTCTAACATATATGTTGG+AGG	-	chr6_1:20636154-20636173	Msa0879080:CDS	35.0%
	GGATACATTGCTACAAACAT+TGG	-	chr6_1:20636175-20636194	Msa0879080:CDS	35.0%
!	TGTGAACATGTTTTGCAATC+TGG	-	chr6_1:20636234-20636253	Msa0879080:CDS	35.0%
!!	TAGAAAGAGTGTTGTTGAGG+TGG	-	chr6_1:20631579-20631598	Msa0879080:three_prime_UTR	40.0%
!	GAAAGTCGAAGAGTGTAAAG+TGG	-	chr6_1:20631642-20631661	Msa0879080:three_prime_UTR	40.0%
!	TAAAGTGGAGCATCCACAAA+GGG	-	chr6_1:20631714-20631733	Msa0879080:three_prime_UTR	40.0%
!	GGAAGTTGAAGAGTGTAAAG+TGG	-	chr6_1:20631756-20631775	Msa0879080:three_prime_UTR	40.0%
!	TAAAGTGGAGCATCCACAAA+GGG	-	chr6_1:20631714-20631733	Msa0879080:three_prime_UTR	40.0%
!	TAAAGTGGAGCATCCACAAA+GGG	-	chr6_1:20631714-20631733	Msa0879080:three_prime_UTR	40.0%
	TAAGGCTGATAGATGTAGAG+AGG	-	chr6_1:20632149-20632168	Msa0879080:intron	40.0%
	GATGTAGAGAGGCTTACAAA+AGG	-	chr6_1:20632160-20632179	Msa0879080:intron	40.0%
	GGCTTACAAAAGGAAAACAC+CGG	-	chr6_1:20632170-20632189	Msa0879080:intron	40.0%
	TTCATTTCCATGATCCATGG+AGG	-	chr6_1:20632256-20632275	Msa0879080:intron	40.0%
	TCATTTCCATGATCCATGGA+GGG	-	chr6_1:20632257-20632276	Msa0879080:intron	40.0%
!	TGAAAATGTTGGGCACTGTT+TGG	+	chr6_1:20632997-20633016	None:intergenic	40.0%
	AGGACAGTTATGGATATGTG+TGG	+	chr6_1:20633387-20633406	None:intergenic	40.0%
!	TCTGTTGAGGTATGCTTTTG+CGG	-	chr6_1:20633467-20633486	Msa0879080:intron	40.0%
	TGTCAAATGAGGTGGATACA+TGG	-	chr6_1:20633692-20633711	Msa0879080:intron	40.0%
	ACTGTGCAGTTCAGTAACAT+AGG	+	chr6_1:20634050-20634069	None:intergenic	40.0%
	GTAATCGGAGCAAAGGAATT+CGG	-	chr6_1:20634413-20634432	Msa0879080:intron	40.0%
!	TCTATCCCTCTCTTAGCTTT+GGG	+	chr6_1:20634466-20634485	None:intergenic	40.0%
	ATCTATCCCTCTCTTAGCTT+TGG	+	chr6_1:20634467-20634486	None:intergenic	40.0%
	TTAGCCATGTTAACCAAGCA+AGG	-	chr6_1:20634511-20634530	Msa0879080:intron	40.0%
	TAGCCATGTTAACCAAGCAA+GGG	-	chr6_1:20634512-20634531	Msa0879080:intron	40.0%
	GTGGAATATGCTATGCAAGT+CGG	-	chr6_1:20634534-20634553	Msa0879080:intron	40.0%
!	GCTATGCAAGTCGGATATTT+TGG	-	chr6_1:20634543-20634562	Msa0879080:intron	40.0%
	TTGAAGGCTAGATGGTGAAT+AGG	-	chr6_1:20634577-20634596	Msa0879080:intron	40.0%
	TGAAGGCTAGATGGTGAATA+GGG	-	chr6_1:20634578-20634597	Msa0879080:intron	40.0%
	GGTGAATAGGGGATGTATAA+AGG	-	chr6_1:20634590-20634609	Msa0879080:intron	40.0%
	TAGGGGATGTATAAAGGTGA+AGG	-	chr6_1:20634596-20634615	Msa0879080:intron	40.0%
	GATGTGATAGCTTCAGACAT+AGG	+	chr6_1:20634633-20634652	None:intergenic	40.0%
	TGGTAAATACACAGTAGGTC+GGG	-	chr6_1:20634710-20634729	Msa0879080:intron	40.0%
	TTGGAGAAAATGCTTACCGA+TGG	-	chr6_1:20634850-20634869	Msa0879080:intron	40.0%
	TGGAGAAAATGCTTACCGAT+GGG	-	chr6_1:20634851-20634870	Msa0879080:intron	40.0%
	AATGCTTACCGATGGGATAA+AGG	-	chr6_1:20634858-20634877	Msa0879080:intron	40.0%
	ACAATCACCTCTTATTCTGC+AGG	+	chr6_1:20634915-20634934	None:intergenic	40.0%
	GCAAGCTGATTATACATGTG+CGG	-	chr6_1:20635219-20635238	Msa0879080:intron	40.0%
	TATACATGTGCGGTTGATCT+TGG	-	chr6_1:20635229-20635248	Msa0879080:intron	40.0%
!!	CTTGGCTTTTTCCGTAATGA+AGG	-	chr6_1:20635247-20635266	Msa0879080:intron	40.0%
	TCATCATCAGCCCTTCATTA+CGG	+	chr6_1:20635261-20635280	None:intergenic	40.0%
	TTGTTAAGGTTCTTACAGGG+TGG	-	chr6_1:20635299-20635318	Msa0879080:intron	40.0%
	AACATATCAGTCTCACCTTC+TGG	+	chr6_1:20635346-20635365	None:intergenic	40.0%
	TGTGAAACACAACTGATGGT+AGG	-	chr6_1:20635678-20635697	Msa0879080:CDS	40.0%
!	TCTTTTAATCAGGTATGCGG+CGG	-	chr6_1:20635827-20635846	Msa0879080:CDS	40.0%
!	CGATATTTTGTACAGGCAAG+TGG	-	chr6_1:20635859-20635878	Msa0879080:CDS	40.0%
!	AGGTGGATTCTTGTCATGCT+AGG	-	chr6_1:20631596-20631615	Msa0879080:three_prime_UTR	45.0%
	GGATTCTTGTCATGCTAGGA+AGG	-	chr6_1:20631600-20631619	Msa0879080:three_prime_UTR	45.0%
!	TAAAGTGGAGCATCCAGAGA+GGG	-	chr6_1:20631657-20631676	Msa0879080:three_prime_UTR	45.0%
!	GTAAAGTGGAGCATCCACAA+AGG	-	chr6_1:20631713-20631732	Msa0879080:three_prime_UTR	45.0%
!!!	GGTCGTGTCTCCTTATTTTC+AGG	-	chr6_1:20631735-20631754	Msa0879080:three_prime_UTR	45.0%
!	GTAAAGTGGAGCATCCACAA+AGG	-	chr6_1:20631713-20631732	Msa0879080:three_prime_UTR	45.0%
!	GTAAAGTGGAGCATCCACAA+AGG	-	chr6_1:20631713-20631732	Msa0879080:three_prime_UTR	45.0%
!	TAAAGTGGAGCATCCACAGA+GGG	-	chr6_1:20631885-20631904	Msa0879080:CDS	45.0%
!	TAAAGTGGAGCATCCACAGA+GGG	-	chr6_1:20631885-20631904	Msa0879080:CDS	45.0%
	GACCGAAAGTTGAAAAGCCT+AGG	-	chr6_1:20632097-20632116	Msa0879080:intron	45.0%
!!	GGAGGCACCCAATTATTATC+CGG	+	chr6_1:20632192-20632211	None:intergenic	45.0%
!!	AGGAGACGCTTTTTAACGAG+AGG	+	chr6_1:20632228-20632247	None:intergenic	45.0%
	CATATAGCAATCACCCTCCA+TGG	+	chr6_1:20632273-20632292	None:intergenic	45.0%
	ATACTCTTGAACCGCACTCA+AGG	-	chr6_1:20632294-20632313	Msa0879080:intron	45.0%
!	GTACCTGTTTTCCTTGAGTG+CGG	+	chr6_1:20632308-20632327	None:intergenic	45.0%
	CGTAAAGAACAGTAGCACAG+TGG	-	chr6_1:20632740-20632759	Msa0879080:intron	45.0%
	AAAGAACAGTAGCACAGTGG+CGG	-	chr6_1:20632743-20632762	Msa0879080:intron	45.0%
	CTGCTCTGCAATACTCTGTT+TGG	-	chr6_1:20632807-20632826	Msa0879080:intron	45.0%
	CTGCAATACTCTGTTTGGAC+AGG	-	chr6_1:20632812-20632831	Msa0879080:intron	45.0%
	GTGTGGTAGTTATGGGACAA+GGG	+	chr6_1:20633370-20633389	None:intergenic	45.0%
	TGTGTGGTAGTTATGGGACA+AGG	+	chr6_1:20633371-20633390	None:intergenic	45.0%
	TCAACGACACGCAAGATGTT+GGG	+	chr6_1:20633758-20633777	None:intergenic	45.0%
	TGCATACAAGTTTCTGCGTC+TGG	+	chr6_1:20633920-20633939	None:intergenic	45.0%
	GTTACTGAACTGCACAGTGT+TGG	-	chr6_1:20634052-20634071	Msa0879080:intron	45.0%
	AGCATCTTCTCCGCCAAAAA+GGG	+	chr6_1:20634370-20634389	None:intergenic	45.0%
	AAGCATCTTCTCCGCCAAAA+AGG	+	chr6_1:20634371-20634390	None:intergenic	45.0%
!!	CTTAATGCTTTTTGGTGGGG+AGG	-	chr6_1:20634388-20634407	Msa0879080:intron	45.0%
	TCATGTCCCAAAGCTAAGAG+AGG	-	chr6_1:20634457-20634476	Msa0879080:intron	45.0%
	CATGTCCCAAAGCTAAGAGA+GGG	-	chr6_1:20634458-20634477	Msa0879080:intron	45.0%
	TAGCATATTCCACCCTTGCT+TGG	+	chr6_1:20634527-20634546	None:intergenic	45.0%
	GAAGGCTAGATGGTGAATAG+GGG	-	chr6_1:20634579-20634598	Msa0879080:intron	45.0%
	TCCTGCAACCTTTATCCCAT+CGG	+	chr6_1:20634869-20634888	None:intergenic	45.0%
	TGGGATAAAGGTTGCAGGAA+CGG	-	chr6_1:20634870-20634889	Msa0879080:intron	45.0%
	ATCACCTCTTATTCTGCAGG+CGG	+	chr6_1:20634912-20634931	None:intergenic	45.0%
	GAGCAGTACAATTGCATGCA+GGG	-	chr6_1:20635131-20635150	Msa0879080:intron	45.0%
	AAAGATCTGTGACTGTCCAG+AGG	+	chr6_1:20635163-20635182	None:intergenic	45.0%
	CTGGACAGTCACAGATCTTT+AGG	-	chr6_1:20635163-20635182	Msa0879080:intron	45.0%
	CTGGCACACTGAATTCAAGT+TGG	+	chr6_1:20635327-20635346	None:intergenic	45.0%
	CTTGAATTCAGTGTGCCAGA+AGG	-	chr6_1:20635328-20635347	Msa0879080:intron	45.0%
	TGTTGCTGAAAGCTGTCTGT+TGG	-	chr6_1:20635362-20635381	Msa0879080:intron	45.0%
	GTTGCTGAAAGCTGTCTGTT+GGG	-	chr6_1:20635363-20635382	Msa0879080:intron	45.0%
	TCGTTCAGCTTGTGATCATG+TGG	+	chr6_1:20635897-20635916	None:intergenic	45.0%
	GTGGAGGGAAAAATATGGTG+AGG	-	chr6_1:20636045-20636064	Msa0879080:CDS	45.0%
	GGGAAAAATATGGTGAGGCA+TGG	-	chr6_1:20636050-20636069	Msa0879080:CDS	45.0%
!	GTAAAGTGGAGCATCCAGAG+AGG	-	chr6_1:20631656-20631675	Msa0879080:three_prime_UTR	50.0%
	TAAGGAGACACAACCCTCTC+TGG	+	chr6_1:20631673-20631692	None:intergenic	50.0%
	TAAGGAGACACGACCCTTTG+TGG	+	chr6_1:20631730-20631749	None:intergenic	50.0%
	TAAGGAGACACGACCCTTTG+TGG	+	chr6_1:20631730-20631749	None:intergenic	50.0%
	TAAGGAGACACGACCCTTTG+TGG	+	chr6_1:20631730-20631749	None:intergenic	50.0%
!	GTAAAGTGGAGCATCCACAG+AGG	-	chr6_1:20631884-20631903	Msa0879080:CDS	50.0%
!	GTAAAGTGGAGCATCCACAG+AGG	-	chr6_1:20631884-20631903	Msa0879080:CDS	50.0%
	CAATCACCCTCCATGGATCA+TGG	+	chr6_1:20632266-20632285	None:intergenic	50.0%
	GAACCGCACTCAAGGAAAAC+AGG	-	chr6_1:20632302-20632321	Msa0879080:intron	50.0%
	GGAGGGAGGATTCGATCAAT+TGG	+	chr6_1:20633349-20633368	None:intergenic	50.0%
	GGTAGTTATGGGACAAGGGA+GGG	+	chr6_1:20633366-20633385	None:intergenic	50.0%
	TGGTAGTTATGGGACAAGGG+AGG	+	chr6_1:20633367-20633386	None:intergenic	50.0%
	GTCAACGACACGCAAGATGT+TGG	+	chr6_1:20633759-20633778	None:intergenic	50.0%
!!	AATGCTTTTTGGTGGGGAGG+AGG	-	chr6_1:20634391-20634410	Msa0879080:intron	50.0%
	TTTGGTGGGGAGGAGGTAAT+CGG	-	chr6_1:20634398-20634417	Msa0879080:intron	50.0%
	ATCGGAGCAAAGGAATTCGG+TGG	-	chr6_1:20634416-20634435	Msa0879080:intron	50.0%
!	GAGCAAAGGAATTCGGTGGT+TGG	-	chr6_1:20634420-20634439	Msa0879080:intron	50.0%
!	AAGGAATTCGGTGGTTGGCT+TGG	-	chr6_1:20634425-20634444	Msa0879080:intron	50.0%
!!	AGGAATTCGGTGGTTGGCTT+GGG	-	chr6_1:20634426-20634445	Msa0879080:intron	50.0%
	CCACCCTTGCTTGGTTAACA+TGG	+	chr6_1:20634518-20634537	None:intergenic	50.0%
	CCATGTTAACCAAGCAAGGG+TGG	-	chr6_1:20634515-20634534	Msa0879080:intron	50.0%
	AATGCTATGTGCAAGGGGAG+TGG	-	chr6_1:20634771-20634790	Msa0879080:intron	50.0%
	ACCGATGGGATAAAGGTTGC+AGG	-	chr6_1:20634865-20634884	Msa0879080:intron	50.0%
	CTCTTATTCTGCAGGCGGTT+TGG	+	chr6_1:20634907-20634926	None:intergenic	50.0%
	CAAACCGCCTGCAGAATAAG+AGG	-	chr6_1:20634905-20634924	Msa0879080:intron	50.0%
	GAACCTCAAACACATGCCTC+CGG	-	chr6_1:20635066-20635085	Msa0879080:intron	50.0%
	ATGCCTCCGGTTCAGATTGT+AGG	-	chr6_1:20635079-20635098	Msa0879080:intron	50.0%
	CACAGGCTGTGTTTGCAGAA+TGG	-	chr6_1:20635107-20635126	Msa0879080:intron	50.0%
	CGAGCAGTACAATTGCATGC+AGG	-	chr6_1:20635130-20635149	Msa0879080:intron	50.0%
	TGTCTGTTGGGTGCAAGAAC+TGG	-	chr6_1:20635375-20635394	Msa0879080:intron	50.0%
	GTCTGTTGGGTGCAAGAACT+GGG	-	chr6_1:20635376-20635395	Msa0879080:intron	50.0%
	TGTTCAGAGGCAAGCGAACA+TGG	-	chr6_1:20635543-20635562	Msa0879080:CDS	50.0%
	CCTTTAATGGTCGACTGCTG+CGG	-	chr6_1:20636023-20636042	Msa0879080:CDS	50.0%
	CTGCGGTGGAGGGAAAAATA+TGG	-	chr6_1:20636040-20636059	Msa0879080:CDS	50.0%
	TAAGGAGACACGACCCTCTG+TGG	+	chr6_1:20631901-20631920	None:intergenic	55.0%
	AGAGGACGTGTAGAACGTGG+AGG	+	chr6_1:20632210-20632229	None:intergenic	55.0%
	ACGAGAGGACGTGTAGAACG+TGG	+	chr6_1:20632213-20632232	None:intergenic	55.0%
	AGTTATGGGACAAGGGAGGG+AGG	+	chr6_1:20633363-20633382	None:intergenic	55.0%
	GGAGGAGGTAATCGGAGCAA+AGG	-	chr6_1:20634406-20634425	Msa0879080:intron	55.0%
!	TCTGCAGGCGGTTTGGACAA+GGG	+	chr6_1:20634900-20634919	None:intergenic	55.0%
!	TTCTGCAGGCGGTTTGGACA+AGG	+	chr6_1:20634901-20634920	None:intergenic	55.0%
	GGATGTGTGTGCGTGTGAAG+AGG	-	chr6_1:20634979-20634998	Msa0879080:intron	55.0%
!	GAACCGGAGGCATGTGTTTG+AGG	+	chr6_1:20635072-20635091	None:intergenic	55.0%
	GTCGCGCCTACAATCTGAAC+CGG	+	chr6_1:20635088-20635107	None:intergenic	55.0%
	TCAGATTGTAGGCGCGACAC+AGG	-	chr6_1:20635090-20635109	Msa0879080:intron	55.0%
	GCATGCAGGGATTTCACCTC+TGG	-	chr6_1:20635144-20635163	Msa0879080:intron	55.0%
	CCGCAGCAGTCGACCATTAA+AGG	+	chr6_1:20636026-20636045	None:intergenic	55.0%
	TTAATGGTCGACTGCTGCGG+TGG	-	chr6_1:20636026-20636045	Msa0879080:CDS	55.0%
	GAACGAGACACGACCCTCTG+TGG	+	chr6_1:20631958-20631977	None:intergenic	60.0%
	GCTATGTGCAAGGGGAGTGG+CGG	-	chr6_1:20634774-20634793	Msa0879080:intron	60.0%
	GCGCCTACAATCTGAACCGG+AGG	+	chr6_1:20635085-20635104	None:intergenic	60.0%
	ATGTGCAAGGGGAGTGGCGG+AGG	-	chr6_1:20634777-20634796	Msa0879080:intron	65.0%
!	AAGGGGAGTGGCGGAGGTTG+TGG	-	chr6_1:20634783-20634802	Msa0879080:intron	65.0%
	ATGGTCGACTGCTGCGGTGG+AGG	-	chr6_1:20636029-20636048	Msa0879080:CDS	65.0%
	TGGTCGACTGCTGCGGTGGA+GGG	-	chr6_1:20636030-20636049	Msa0879080:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	20631502	20636292	20631502	ID=Msa0879080;Name=Msa0879080
chr6_1	mRNA	20631502	20636292	20631502	ID=Msa0879080-mRNA-1;Parent=Msa0879080;Name=Msa0879080-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.33\|0.5\|0.75\|0.66\|0.75\|4\|336\|425
chr6_1	exon	20631502	20631955	20631502	ID=Msa0879080-mRNA-1:exon:5663;Parent=Msa0879080-mRNA-1
chr6_1	exon	20632868	20633008	20632868	ID=Msa0879080-mRNA-1:exon:5662;Parent=Msa0879080-mRNA-1
chr6_1	exon	20633717	20633913	20633717	ID=Msa0879080-mRNA-1:exon:5661;Parent=Msa0879080-mRNA-1
chr6_1	exon	20635471	20636292	20635471	ID=Msa0879080-mRNA-1:exon:5660;Parent=Msa0879080-mRNA-1
chr6_1	CDS	20635471	20636292	20635471	ID=Msa0879080-mRNA-1:cds;Parent=Msa0879080-mRNA-1
chr6_1	CDS	20633717	20633913	20633717	ID=Msa0879080-mRNA-1:cds;Parent=Msa0879080-mRNA-1
chr6_1	CDS	20632868	20633008	20632868	ID=Msa0879080-mRNA-1:cds;Parent=Msa0879080-mRNA-1
chr6_1	CDS	20631838	20631955	20631838	ID=Msa0879080-mRNA-1:cds;Parent=Msa0879080-mRNA-1
chr6_1	three_prime_UTR	20631502	20631837	20631502	ID=Msa0879080-mRNA-1:three_prime_utr;Parent=Msa0879080-mRNA-1

Gene Sequence

>Msa0879080

ATGGAAAGTAACCATTACAATGAGTTTGCGTACATAGACAATCCTTTCAGTAAGTATGCGTACAAGGGAAATCATCTTAGAAAGAGTGTTGTTGAGGTGGATTCTTGTCATGCTAGGAAGGTCTTGTCTCGTTATTCTCTGAAAGTCGAAGAGTGTAAAGTGGAGCATCCAGAGAGGGTTGTGTCTCCTTATTTTCAGAAAGTTGAAGAATGTAAAGTGGAGCATCCACAAAGGGTCGTGTCTCCTTATTTTCAGGAAGTTGAAGAGTGTAAAGTGGAGCATCCACAAAGGGTCGTGTCTCCTTATTTTCAGAAAGTTGAAGAGTGTAAAGTGGAGCATCCACAAAGGGTCGTGTCTCCTTATTTTCAGAAAGTTGAAGAGTGTAAAGTGGAGCATCCACAGAGGGTCGTGTCTCCTTATTTTCAGAAAGTTGAAGAGTGTAAAGTGGAGCATCCACAGAGGGTCGTGTCTCGTTCTACGAAGAGCATTGAAGATTTAGAACAGTTTAGGTATCAGAGTGAAAAAGTGTCAAGTCTAAGAGAGTGTGTTAAGAACAGTGAACTTCCTCCTAAGATTTTCAATGACTCTCGAAAGAGACCGAAAGTTGAAAAGCCTAGGAAATCAGAAAGAAAAACTAAACCTTTTCTTAAGGCTGATAGATGTAGAGAGGCTTACAAAAGGAAAACACCGGATAATAATTGGGTGCCTCCACGTTCTACACGTCCTCTCGTTAAAAAGCGTCTCCTTCAAGAGTTTCATTTCCATGATCCATGGAGGGTGATTGCTATATGTATACTCTTGAACCGCACTCAAGGAAAACAGGCAAAACAAGTTTTAGATAACTTTTTCGAGTTATGTCCAGACGCAGAAACTTGTATGCAAGTAAGAAGAGAGGAAATAGAAGAGGTAATAAGGACATTAGGTCTTCAAGTGAAAAGGTCAGCAAGTTTGCAACGCTTTTCTCGTGAATACTTAACTGAGACTTGGACCTATGTTACTGAACTGCACAGTGTTGGCAAGGGAGTGGCGGAGGTTGTGGTAGACCCATGTCCCTCTGAAAATCTATATTCTTATCTAGCGGATTTGGAGAAAATGCTTACCGATGGGATAAAGGTTGCAGGAACGGCATTCCCTTGTCCAAACCGCCTGCAGAATAAGAGGTATGCGGCGGATGCATATGCGATATTTTGTACAGGCAAGTGGGATGAAGTTGTACCACATGATCACAAGCTGAACGAATATTGGAATTTCCTTCGCAAAAGAAAGGATACATTGTGA

Protein sequence

>Msa0879080

MESNHYNEFAYIDNPFSKYAYKGNHLRKSVVEVDSCHARKVLSRYSLKVEECKVEHPERVVSPYFQKVEECKVEHPQRVVSPYFQEVEECKVEHPQRVVSPYFQKVEECKVEHPQRVVSPYFQKVEECKVEHPQRVVSPYFQKVEECKVEHPQRVVSRSTKSIEDLEQFRYQSEKVSSLRECVKNSELPPKIFNDSRKRPKVEKPRKSERKTKPFLKADRCREAYKRKTPDNNWVPPRSTRPLVKKRLLQEFHFHDPWRVIAICILLNRTQGKQAKQVLDNFFELCPDAETCMQVRREEIEEVIRTLGLQVKRSASLQRFSREYLTETWTYVTELHSVGKGVAEVVVDPCPSENLYSYLADLEKMLTDGIKVAGTAFPCPNRLQNKRYAADAYAIFCTGKWDEVVPHDHKLNEYWNFLRKRKDTL*