AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0197780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197780 MtrunA17_Chr2g0290601 93.548 341 17 1 1 336 1 341 0.0 564
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0197780 AT5G47680.1 66.460 322 105 2 7 325 16 337 8.09e-134 385

Find 117 sgRNAs with CRISPR-Local

Find 304 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTTGTTCTTTGGATTT+TGG 0.161949 2_1:-16092814 Msa0197780:three_prime_UTR
AATCTATTTAGGATGAATTT+TGG 0.171342 2_1:-16092444 Msa0197780:three_prime_UTR
CTTGTTAAAGCGAAAGAATT+AGG 0.235954 2_1:-16096439 Msa0197780:CDS
CCTCTTGGAACGTTGTTCTT+TGG 0.251149 2_1:-16092821 Msa0197780:three_prime_UTR
TTGAACAAGATATATATAAT+TGG 0.269988 2_1:-16094173 Msa0197780:CDS
CCTGCACATCTTTGGCTAAC+TGG 0.276977 2_1:-16094356 Msa0197780:CDS
TAGCTTCTTCTCCGCGTTCT+TGG 0.297523 2_1:+16096678 None:intergenic
CAAACTGAACCTAAATAAAA+AGG 0.302071 2_1:+16092412 None:intergenic
TATTCTGTAGGAATCTATTT+AGG 0.309485 2_1:-16092455 Msa0197780:three_prime_UTR
TGGTGGTGGAACAGTGGATT+CGG 0.312822 2_1:+16096720 None:intergenic
CAAAACAACGGCAATAGATA+TGG 0.334309 2_1:-16096758 Msa0197780:exon
TTGAAGCGAGAATGAGTTTA+CGG 0.348669 2_1:-16096513 Msa0197780:CDS
TCATCAACAAGTTTGTTAGA+AGG 0.359781 2_1:+16093019 None:intergenic
GTGATACCCCTGCACATCTT+TGG 0.363917 2_1:-16094364 Msa0197780:CDS
GTGGATTAGTTGATAGGAAT+AGG 0.366874 2_1:-16094151 Msa0197780:CDS
TTGTTAAAGCGAAAGAATTA+GGG 0.371694 2_1:-16096438 Msa0197780:CDS
GGCAGATCGTAAGGATGATT+TGG 0.373805 2_1:-16094240 Msa0197780:CDS
CTTGAAGATGTCTAGTTCTC+AGG 0.377122 2_1:-16094057 Msa0197780:intron
TGTGGCTTTGCCACAACAAT+AGG 0.386344 2_1:+16092674 None:intergenic
TAATTGGTGGATTAGTTGAT+AGG 0.387931 2_1:-16094157 Msa0197780:CDS
CACAAGTTTCAAATCATTGA+TGG 0.392956 2_1:-16092961 Msa0197780:three_prime_UTR
TAAGTCTTATATTGAAGTAT+TGG 0.396078 2_1:-16094261 Msa0197780:CDS
CAAACAGCTAAACTACCTAT+TGG 0.406476 2_1:-16094086 Msa0197780:CDS
GAGTTTACGGAAGGAGAGAA+TGG 0.415787 2_1:-16096500 Msa0197780:CDS
AGAGAAGAAAGCGGCGGCGA+AGG 0.418398 2_1:-16096623 Msa0197780:CDS
AAGAGGGTAATTCCATCATA+AGG 0.436588 2_1:+16092838 None:intergenic
AGAAATACTACTCAAGTTCC+TGG 0.437281 2_1:-16093221 Msa0197780:CDS
TCTGAAGTGGGTTGTGGTGG+TGG 0.439329 2_1:+16096706 None:intergenic
AGAAGGAAACTGAACGGAAA+AGG 0.448551 2_1:-16096591 Msa0197780:CDS
GTCACACCTCGCAGAAAATC+CGG 0.448803 2_1:+16092864 None:intergenic
GGTGGTGGAACAGTGGATTC+GGG 0.452897 2_1:+16096721 None:intergenic
ATGCATACTTGTAGTTAAGT+TGG 0.455539 2_1:-16092650 Msa0197780:three_prime_UTR
TTACAAGAACCGAACATAGT+AGG 0.458262 2_1:+16092582 None:intergenic
TGTAAAACATATTCTTTGAG+AGG 0.461127 2_1:-16092564 Msa0197780:three_prime_UTR
CATCAACAAGTTTGTTAGAA+GGG 0.461175 2_1:+16093020 None:intergenic
TGAAGTGTAGAGCGTAGAAC+TGG 0.461467 2_1:-16092999 Msa0197780:exon
GAACAGTGGATTCGGGTTCG+TGG 0.461513 2_1:+16096728 None:intergenic
AACAAGATATATATAATTGG+TGG 0.462299 2_1:-16094170 Msa0197780:CDS
CCAGTTAGCCAAAGATGTGC+AGG 0.463576 2_1:+16094356 None:intergenic
GGAGAGAATGGAGAAAAGGT+TGG 0.464442 2_1:-16096488 Msa0197780:CDS
TTAACCAACATCATCATACT+TGG 0.470296 2_1:-16092299 Msa0197780:three_prime_UTR
TCGACGATTCCTACTATGTT+CGG 0.475571 2_1:-16092591 Msa0197780:three_prime_UTR
AGCTAGCGAAACAACAAAGA+TGG 0.480079 2_1:-16096660 Msa0197780:CDS
GAGAGTTCTGAAGTGGGTTG+TGG 0.480250 2_1:+16096700 None:intergenic
AGTTCTGAAGTGGGTTGTGG+TGG 0.482591 2_1:+16096703 None:intergenic
AGTTGATAGGAATAGGTTCA+AGG 0.488910 2_1:-16094144 Msa0197780:CDS
CTGAACGGAAAAGGAAGGAA+TGG 0.495923 2_1:-16096582 Msa0197780:CDS
TTATGATGGAATTACCCTCT+TGG 0.498320 2_1:-16092836 Msa0197780:three_prime_UTR
AACTGGCTGCGAAGGAGAGA+TGG 0.499121 2_1:-16094339 Msa0197780:CDS
GGAAGGAGAGAATGGAGAAA+AGG 0.501934 2_1:-16096492 Msa0197780:CDS
AGAAAGTATAGCGGGGATAA+CGG 0.504106 2_1:-16096557 Msa0197780:CDS
GTGGATTCGGGTTCGTGGGA+TGG 0.505223 2_1:+16096733 None:intergenic
TAGGTTCAAGGGGATAACTA+TGG 0.506219 2_1:-16094132 Msa0197780:CDS
AATTCGTAGTCTCGTTCAGC+AGG 0.506651 2_1:-16096365 Msa0197780:intron
TGAAGTATTGGCAGATCGTA+AGG 0.508636 2_1:-16094249 Msa0197780:CDS
TGTATATATATTGTTTGAGT+CGG 0.511992 2_1:+16092487 None:intergenic
AGATACCGGGATTTGATAAG+TGG 0.516271 2_1:-16094301 Msa0197780:CDS
GTAAAACATATTCTTTGAGA+GGG 0.520534 2_1:-16092563 Msa0197780:three_prime_UTR
ATGTATTGCTATGCGGTGAA+TGG 0.524164 2_1:-16094392 Msa0197780:CDS
GAATGGGAAGAAAGTATAGC+GGG 0.525752 2_1:-16096565 Msa0197780:CDS
TTCTTGGAGAGTTCTGAAGT+GGG 0.527632 2_1:+16096694 None:intergenic
TTTGTTGAGAATGGAGAGAG+AGG 0.527935 2_1:+16096777 None:intergenic
GTTCTTGGAGAGTTCTGAAG+TGG 0.533454 2_1:+16096693 None:intergenic
GGCGAAGGAGCAGAAGAAGA+AGG 0.534673 2_1:-16096608 Msa0197780:CDS
AGTTCCTGGAGACAAGGGAT+TGG 0.534892 2_1:-16093207 Msa0197780:CDS
AGAGGGTAATTCCATCATAA+GGG 0.537730 2_1:+16092839 None:intergenic
AACAGTGGATTCGGGTTCGT+GGG 0.540655 2_1:+16096729 None:intergenic
TACTCAAGTTCCTGGAGACA+AGG 0.542557 2_1:-16093213 Msa0197780:CDS
ACAAGTTTCAAATCATTGAT+GGG 0.545384 2_1:-16092960 Msa0197780:three_prime_UTR
CTTTGGCTAACTGGCTGCGA+AGG 0.546041 2_1:-16094347 Msa0197780:CDS
GGGTTGTGGTGGTGGAACAG+TGG 0.548162 2_1:+16096714 None:intergenic
GAACAATGGTCCTCTCTACA+AGG 0.548940 2_1:+16092612 None:intergenic
TGTTTGCTTGCGCACACCAA+GGG 0.549981 2_1:+16092747 None:intergenic
AAACAATATATATACACTTG+TGG 0.550055 2_1:-16092480 Msa0197780:three_prime_UTR
GTTGATAGGAATAGGTTCAA+GGG 0.551035 2_1:-16094143 Msa0197780:CDS
ATCTTCAAGAAATTGCCAAT+AGG 0.551379 2_1:+16094071 None:intergenic
AGGTGTGACCTCCCTTATGA+TGG 0.555087 2_1:-16092850 Msa0197780:three_prime_UTR
AGATCACAAGCTGATTCAGA+AGG 0.558701 2_1:-16093148 Msa0197780:CDS
TGAACGGAAAAGGAAGGAAT+GGG 0.562057 2_1:-16096581 Msa0197780:CDS
AACGGAGGAAGAGAGAGTGA+AGG 0.562848 2_1:-16096539 Msa0197780:CDS
ATGATCCACTTATCAAATCC+CGG 0.563131 2_1:+16094296 None:intergenic
ACAGTTATGTTATTTGACAA+TGG 0.565339 2_1:-16092784 Msa0197780:three_prime_UTR
TGCAAGATGTCAAATATCAT+AGG 0.566365 2_1:+16092719 None:intergenic
GCTAGCGAAACAACAAAGAT+GGG 0.569754 2_1:-16096659 Msa0197780:CDS
GTATCTAACGGCTGATTCAG+AGG 0.575403 2_1:-16094216 Msa0197780:CDS
GGATGATTTGGTGTATCTAA+CGG 0.578478 2_1:-16094228 Msa0197780:CDS
CCAAAGAACAACGTTCCAAG+AGG 0.578724 2_1:+16092821 None:intergenic
TTGATAGGAATAGGTTCAAG+GGG 0.582030 2_1:-16094142 Msa0197780:CDS
TGCAGATAATACTGTAGATG+AGG 0.589269 2_1:-16093122 Msa0197780:CDS
CACTATTGAGCCTTGTAGAG+AGG 0.590068 2_1:-16092622 Msa0197780:three_prime_UTR
GGAAACTGAACGGAAAAGGA+AGG 0.593141 2_1:-16096587 Msa0197780:CDS
ACACTTGTGGAATATTCTGT+AGG 0.601308 2_1:-16092467 Msa0197780:three_prime_UTR
AGCGAGAATGAGTTTACGGA+AGG 0.602257 2_1:-16096509 Msa0197780:CDS
TGATCCAAGTATGATGATGT+TGG 0.604115 2_1:+16092295 None:intergenic
CAGTTAGCCAAAGATGTGCA+GGG 0.609008 2_1:+16094357 None:intergenic
TGATAAGTGGATCATCGAGA+AGG 0.617301 2_1:-16094288 Msa0197780:CDS
AGAAGAAGAAGGAAACTGAA+CGG 0.617838 2_1:-16096597 Msa0197780:CDS
TAACTACAAGTATGCATGTG+TGG 0.620464 2_1:+16092656 None:intergenic
ATGGAGAAAGCACAAGAGCA+AGG 0.622205 2_1:-16094113 Msa0197780:CDS
TCTTTGCTGTTATCCCTCAG+AGG 0.622550 2_1:-16093174 Msa0197780:CDS
ACGAGACTACGAATTTCTTG+AGG 0.622869 2_1:+16096373 None:intergenic
TTACGTATGTTAATGTATGT+CGG 0.624289 2_1:-16092340 Msa0197780:three_prime_UTR
ACTCAAGTTCCTGGAGACAA+GGG 0.624343 2_1:-16093212 Msa0197780:CDS
AAAGAAAGCAGAGAAGAAAG+CGG 0.626250 2_1:-16096632 Msa0197780:CDS
ATGTTTGCTTGCGCACACCA+AGG 0.627820 2_1:+16092746 None:intergenic
CTCCATTCTCAACAAAACAA+CGG 0.636475 2_1:-16096770 Msa0197780:five_prime_UTR
GAAAGCAGAGAAGAAAGCGG+CGG 0.640363 2_1:-16096629 Msa0197780:CDS
TAGTAGGAATCGTCGAACAA+TGG 0.644966 2_1:+16092598 None:intergenic
CAAAGAACAACGTTCCAAGA+GGG 0.647171 2_1:+16092822 None:intergenic
TTCAGAACTCTCCAAGAACG+CGG 0.669890 2_1:-16096689 Msa0197780:CDS
GGGTAATTCCATCATAAGGG+AGG 0.673707 2_1:+16092842 None:intergenic
TCAGTATGTACCTATTGTTG+TGG 0.675940 2_1:-16092684 Msa0197780:three_prime_UTR
GGAATGGGAAGAAAGTATAG+CGG 0.683390 2_1:-16096566 Msa0197780:CDS
AGTTAGCCAAAGATGTGCAG+GGG 0.690170 2_1:+16094358 None:intergenic
AAGTATAGCGGGGATAACGG+AGG 0.708957 2_1:-16096554 Msa0197780:CDS
AATGGGAAGAAAGTATAGCG+GGG 0.715050 2_1:-16096564 Msa0197780:CDS
GTAGATAATGTATTGCTATG+CGG 0.772427 2_1:-16094399 Msa0197780:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATTTATTAATTATTAAT+AGG - chr2_1:16092780-16092799 Msa0197780:three_prime_UTR 0.0%
!! AGTGATTATATTTATATTAA+AGG - chr2_1:16092811-16092830 Msa0197780:three_prime_UTR 10.0%
!! ATTATATTTATATTAAAGGT+CGG - chr2_1:16092815-16092834 Msa0197780:three_prime_UTR 10.0%
!! TAATATATGTTTAAATAAGA+CGG - chr2_1:16094500-16094519 Msa0197780:intron 10.0%
!!! TTTTTTTGTGAATTTTTTGA+TGG - chr2_1:16092699-16092718 Msa0197780:three_prime_UTR 15.0%
!!! TTTTTTGTGAATTTTTTGAT+GGG - chr2_1:16092700-16092719 Msa0197780:three_prime_UTR 15.0%
!!! CTTATTTTCATTAGTTTATA+TGG - chr2_1:16092947-16092966 Msa0197780:three_prime_UTR 15.0%
!! ATAGCTTATTATATTTAATC+AGG - chr2_1:16093826-16093845 Msa0197780:intron 15.0%
!! AAAAATGAGATTCAAAATTA+GGG + chr2_1:16094045-16094064 None:intergenic 15.0%
!! AAAAAATGAGATTCAAAATT+AGG + chr2_1:16094046-16094065 None:intergenic 15.0%
!! TTTGAATATTGTTGTATTAA+TGG - chr2_1:16094386-16094405 Msa0197780:CDS 15.0%
!! TTATATTTCTTATTGTGTAT+TGG - chr2_1:16094575-16094594 Msa0197780:intron 15.0%
!! TTGAACAAGATATATATAAT+TGG - chr2_1:16094851-16094870 Msa0197780:intron 15.0%
!! TGATCTATGAAATTATAATT+TGG - chr2_1:16095402-16095421 Msa0197780:intron 15.0%
!!! TTTAGATTGTTTATGGTTTT+TGG - chr2_1:16092726-16092745 Msa0197780:three_prime_UTR 20.0%
!!! TTAGATTGTTTATGGTTTTT+GGG - chr2_1:16092727-16092746 Msa0197780:three_prime_UTR 20.0%
!!! TATTGTGTATTGGTAAATTA+TGG - chr2_1:16094585-16094604 Msa0197780:intron 20.0%
!! TAATCAATTGAAAAAGATAC+CGG - chr2_1:16094709-16094728 Msa0197780:intron 20.0%
!!! TAAGTCTTATATTGAAGTAT+TGG - chr2_1:16094763-16094782 Msa0197780:intron 20.0%
!! AACAAGATATATATAATTGG+TGG - chr2_1:16094854-16094873 Msa0197780:intron 20.0%
!!! AAGTTTGTATTTTGTATCAT+TGG - chr2_1:16095064-16095083 Msa0197780:intron 20.0%
!!! GTACTATGTATTGATTATAT+TGG - chr2_1:16095098-16095117 Msa0197780:intron 20.0%
!!! TACTTGATAACACTTAAAAA+TGG - chr2_1:16095706-16095725 Msa0197780:intron 20.0%
!!! ACTTGATAACACTTAAAAAT+GGG - chr2_1:16095707-16095726 Msa0197780:intron 20.0%
!! TGTATATATATTGTTTGAGT+CGG + chr2_1:16096540-16096559 None:intergenic 20.0%
!! AAACAATATATATACACTTG+TGG - chr2_1:16096544-16096563 Msa0197780:CDS 20.0%
!!! AATCTATTTAGGATGAATTT+TGG - chr2_1:16096580-16096599 Msa0197780:CDS 20.0%
!!! ATCTATTTAGGATGAATTTT+GGG - chr2_1:16096581-16096600 Msa0197780:CDS 20.0%
!! AACCTAAATAAAAAGGTTAA+TGG + chr2_1:16096608-16096627 None:intergenic 20.0%
!!! TTGAACTATTTTTGAGTTAA+GGG + chr2_1:16096640-16096659 None:intergenic 20.0%
!!! ATTGAACTATTTTTGAGTTA+AGG + chr2_1:16096641-16096660 None:intergenic 20.0%
!!! TGCTTAAACTCTAAATTTTT+GGG + chr2_1:16096803-16096822 None:intergenic 20.0%
!!! TTGCTTAAACTCTAAATTTT+TGG + chr2_1:16096804-16096823 None:intergenic 20.0%
! TTGTTAAAGCGAAAGAATTA+GGG - chr2_1:16092586-16092605 Msa0197780:three_prime_UTR 25.0%
!!! TGGGTTTTTTAGATTGTTTA+TGG - chr2_1:16092719-16092738 Msa0197780:three_prime_UTR 25.0%
! ATTTATATTAAAGGTCGGTT+TGG - chr2_1:16092820-16092839 Msa0197780:three_prime_UTR 25.0%
! AAAATAGGGTTAATGGAAAT+TGG - chr2_1:16093536-16093555 Msa0197780:intron 25.0%
! AAATAGGGTTAATGGAAATT+GGG - chr2_1:16093537-16093556 Msa0197780:intron 25.0%
!!! TTGGACCAGTTTTTTTATAT+TGG - chr2_1:16093572-16093591 Msa0197780:intron 25.0%
!!! TGGACCAGTTTTTTTATATT+GGG - chr2_1:16093573-16093592 Msa0197780:intron 25.0%
! AAAGCCCAATATAAAAAAAC+TGG + chr2_1:16093580-16093599 None:intergenic 25.0%
! AATTACGAATTATGTGACTA+TGG - chr2_1:16093959-16093978 Msa0197780:intron 25.0%
!!! TCATTTTTTAGCTCTATGTA+TGG - chr2_1:16094057-16094076 Msa0197780:intron 25.0%
!!! AAAATTCTATAGCGGATAAT+GGG + chr2_1:16094111-16094130 None:intergenic 25.0%
!!! AAAAATTCTATAGCGGATAA+TGG + chr2_1:16094112-16094131 None:intergenic 25.0%
! GAACTCAAAAAATTCTATAG+CGG + chr2_1:16094119-16094138 None:intergenic 25.0%
! TTAGTCTATGTTATCAATCT+CGG + chr2_1:16094160-16094179 None:intergenic 25.0%
! TTGTAAAATCATGTCAACAT+AGG + chr2_1:16094296-16094315 None:intergenic 25.0%
!!! CGTATATTTTTGGTATAAAC+TGG - chr2_1:16094339-16094358 Msa0197780:CDS 25.0%
!! TGTATTGGTAAATTATGGAA+TGG - chr2_1:16094590-16094609 Msa0197780:intron 25.0%
! AATCAATTGAAAAAGATACC+GGG - chr2_1:16094710-16094729 Msa0197780:intron 25.0%
!!! TCTATCACATTACTCTTTTT+TGG - chr2_1:16095425-16095444 Msa0197780:intron 25.0%
!! ATTGCTGATCTTCAATTTTA+TGG - chr2_1:16095624-16095643 Msa0197780:intron 25.0%
! AAGTAAAAAGAAATGTGTTG+AGG - chr2_1:16095977-16095996 Msa0197780:intron 25.0%
! ACAAGTTTCAAATCATTGAT+GGG - chr2_1:16096064-16096083 Msa0197780:intron 25.0%
!! ACAGTTATGTTATTTGACAA+TGG - chr2_1:16096240-16096259 Msa0197780:intron 25.0%
! TGTAAAACATATTCTTTGAG+AGG - chr2_1:16096460-16096479 Msa0197780:CDS 25.0%
!! GTAAAACATATTCTTTGAGA+GGG - chr2_1:16096461-16096480 Msa0197780:CDS 25.0%
! TATTCTGTAGGAATCTATTT+AGG - chr2_1:16096569-16096588 Msa0197780:CDS 25.0%
!!! GTCCATTAACCTTTTTATTT+AGG - chr2_1:16096603-16096622 Msa0197780:CDS 25.0%
! CAAACTGAACCTAAATAAAA+AGG + chr2_1:16096615-16096634 None:intergenic 25.0%
! TTACGTATGTTAATGTATGT+CGG - chr2_1:16096684-16096703 Msa0197780:CDS 25.0%
!!! GGAGGAAAAAAAATTGATTT+TGG + chr2_1:16096782-16096801 None:intergenic 25.0%
!!! TTAAACTCTAAATTTTTGGG+AGG + chr2_1:16096800-16096819 None:intergenic 25.0%
AGAAAAATGAGAAGAAAGAG+AGG - chr2_1:16092562-16092581 Msa0197780:three_prime_UTR 30.0%
CTTGTTAAAGCGAAAGAATT+AGG - chr2_1:16092585-16092604 Msa0197780:three_prime_UTR 30.0%
TTAAGCTGTTTATCTGAACA+AGG - chr2_1:16093059-16093078 Msa0197780:CDS 30.0%
CTATGTTGTCAATACTATAG+CGG - chr2_1:16093096-16093115 Msa0197780:CDS 30.0%
TTAGAGTTACATAATTCGCT+GGG - chr2_1:16093240-16093259 Msa0197780:CDS 30.0%
ATGAGGAAGATGATGAAAAT+AGG - chr2_1:16093521-16093540 Msa0197780:intron 30.0%
TGAGGAAGATGATGAAAATA+GGG - chr2_1:16093522-16093541 Msa0197780:intron 30.0%
GATGATGAAAATAGGGTTAA+TGG - chr2_1:16093529-16093548 Msa0197780:intron 30.0%
ACATAATTCGTAATTCGTTC+TGG + chr2_1:16093954-16093973 None:intergenic 30.0%
TAAAATCATGTCAACATAGG+AGG + chr2_1:16094293-16094312 None:intergenic 30.0%
! ATTTTACAATCTCAGCCAAT+TGG - chr2_1:16094307-16094326 Msa0197780:CDS 30.0%
! TTTTACAATCTCAGCCAATT+GGG - chr2_1:16094308-16094327 Msa0197780:CDS 30.0%
! GGATGTTTCTCGTATATTTT+TGG - chr2_1:16094329-16094348 Msa0197780:CDS 30.0%
!!! TATTTTTGGTATAAACTGGC+AGG - chr2_1:16094343-16094362 Msa0197780:CDS 30.0%
!!! ATTTTTGGTATAAACTGGCA+GGG - chr2_1:16094344-16094363 Msa0197780:CDS 30.0%
!!! AGTGAGTTTTGAATGTGTAT+TGG - chr2_1:16094460-16094479 Msa0197780:intron 30.0%
GTAGATAATGTATTGCTATG+CGG - chr2_1:16094625-16094644 Msa0197780:intron 30.0%
!! TAATTGGTGGATTAGTTGAT+AGG - chr2_1:16094867-16094886 Msa0197780:intron 30.0%
ATCTTCAAGAAATTGCCAAT+AGG + chr2_1:16094956-16094975 None:intergenic 30.0%
! TACAAACTTTTAGCAGTCAA+AGG + chr2_1:16095053-16095072 None:intergenic 30.0%
CAAAAGAGAGAGAGAAAAAA+TGG - chr2_1:16095220-16095239 Msa0197780:intron 30.0%
ACCATTTAGCTGAAATTACT+GGG - chr2_1:16095339-16095358 Msa0197780:intron 30.0%
TTCAGTCCTACATCTATAAA+GGG + chr2_1:16095561-16095580 None:intergenic 30.0%
ATTCAGTCCTACATCTATAA+AGG + chr2_1:16095562-16095581 None:intergenic 30.0%
TTATAGATGTAGGACTGAAT+TGG - chr2_1:16095562-16095581 Msa0197780:intron 30.0%
TAAATCACCAACTTAGTCTA+GGG + chr2_1:16095688-16095707 None:intergenic 30.0%
AAATGTCTTAGACACACAAA+TGG + chr2_1:16095738-16095757 None:intergenic 30.0%
TATTTCTCATTTGAGCTTTC+AGG - chr2_1:16095758-16095777 Msa0197780:intron 30.0%
TGAAGAAAAAGATGATCTAC+TGG - chr2_1:16095953-16095972 Msa0197780:intron 30.0%
!! CATCAACAAGTTTGTTAGAA+GGG + chr2_1:16096007-16096026 None:intergenic 30.0%
!! TCATCAACAAGTTTGTTAGA+AGG + chr2_1:16096008-16096027 None:intergenic 30.0%
CACAAGTTTCAAATCATTGA+TGG - chr2_1:16096063-16096082 Msa0197780:intron 30.0%
TGCAAGATGTCAAATATCAT+AGG + chr2_1:16096308-16096327 None:intergenic 30.0%
ATGCATACTTGTAGTTAAGT+TGG - chr2_1:16096374-16096393 Msa0197780:CDS 30.0%
TTAACCAACATCATCATACT+TGG - chr2_1:16096725-16096744 Msa0197780:CDS 30.0%
CTCCATTCTCAACAAAACAA+CGG - chr2_1:16092254-16092273 Msa0197780:three_prime_UTR 35.0%
CAAAACAACGGCAATAGATA+TGG - chr2_1:16092266-16092285 Msa0197780:three_prime_UTR 35.0%
AAAGAAAGCAGAGAAGAAAG+CGG - chr2_1:16092392-16092411 Msa0197780:three_prime_UTR 35.0%
AGAAGAAGAAGGAAACTGAA+CGG - chr2_1:16092427-16092446 Msa0197780:three_prime_UTR 35.0%
TTGAAGCGAGAATGAGTTTA+CGG - chr2_1:16092511-16092530 Msa0197780:three_prime_UTR 35.0%
AAACATTTGCGAGACTGTTT+AGG - chr2_1:16092873-16092892 Msa0197780:three_prime_UTR 35.0%
CGAATTATGTAACTCTAAGC+GGG + chr2_1:16093238-16093257 None:intergenic 35.0%
GCGAATTATGTAACTCTAAG+CGG + chr2_1:16093239-16093258 None:intergenic 35.0%
CTTAGAGTTACATAATTCGC+TGG - chr2_1:16093239-16093258 Msa0197780:CDS 35.0%
TGATTCTTCCAAATTCGTGA+AGG - chr2_1:16093320-16093339 Msa0197780:intron 35.0%
AGAAGAATTCGGTACGTATA+GGG + chr2_1:16093894-16093913 None:intergenic 35.0%
TACGCTACATGAGAAGAATT+CGG + chr2_1:16093905-16093924 None:intergenic 35.0%
TTCCCTCAAAATTGCAATAG+CGG + chr2_1:16094010-16094029 None:intergenic 35.0%
AACAAAGTCAGACAAAGCAA+AGG - chr2_1:16094210-16094229 Msa0197780:CDS 35.0%
TATACGAGAAACATCCCAAT+TGG + chr2_1:16094325-16094344 None:intergenic 35.0%
! GAATGTGTATTGGTAAACGA+TGG - chr2_1:16094470-16094489 Msa0197780:intron 35.0%
! TGTATTGGTAAACGATGGAA+TGG - chr2_1:16094475-16094494 Msa0197780:intron 35.0%
ATGATCCACTTATCAAATCC+CGG + chr2_1:16094731-16094750 None:intergenic 35.0%
!! GGATGATTTGGTGTATCTAA+CGG - chr2_1:16094796-16094815 Msa0197780:intron 35.0%
!! GTGGATTAGTTGATAGGAAT+AGG - chr2_1:16094873-16094892 Msa0197780:intron 35.0%
!! AGTTGATAGGAATAGGTTCA+AGG - chr2_1:16094880-16094899 Msa0197780:intron 35.0%
! GTTGATAGGAATAGGTTCAA+GGG - chr2_1:16094881-16094900 Msa0197780:intron 35.0%
TTGATAGGAATAGGTTCAAG+GGG - chr2_1:16094882-16094901 Msa0197780:intron 35.0%
CAAACAGCTAAACTACCTAT+TGG - chr2_1:16094938-16094957 Msa0197780:intron 35.0%
!!! TAACCCTCTTGTTTTTGCTT+TGG - chr2_1:16095011-16095030 Msa0197780:intron 35.0%
!!! AACCCTCTTGTTTTTGCTTT+GGG - chr2_1:16095012-16095031 Msa0197780:intron 35.0%
AGAGACGATTGAGAGAAAAT+AGG - chr2_1:16095178-16095197 Msa0197780:intron 35.0%
GAGACGATTGAGAGAAAATA+GGG - chr2_1:16095179-16095198 Msa0197780:intron 35.0%
AAGAGAGAGAGAAAAAATGG+AGG - chr2_1:16095223-16095242 Msa0197780:intron 35.0%
AGAGAGAGAGAAAAAATGGA+GGG - chr2_1:16095224-16095243 Msa0197780:intron 35.0%
AATGTAAAAGAACCTACCGA+TGG + chr2_1:16095283-16095302 None:intergenic 35.0%
CACCATTTAGCTGAAATTAC+TGG - chr2_1:16095338-16095357 Msa0197780:intron 35.0%
CCATTTAGCTGAAATTACTG+GGG - chr2_1:16095340-16095359 Msa0197780:intron 35.0%
ATGTGTCAAAGTGACTAATG+TGG - chr2_1:16095470-16095489 Msa0197780:intron 35.0%
TTGAAGATCAGCAATCACAT+TGG + chr2_1:16095619-16095638 None:intergenic 35.0%
TAAATTGCCCTAGACTAAGT+TGG - chr2_1:16095678-16095697 Msa0197780:intron 35.0%
GTAAATCACCAACTTAGTCT+AGG + chr2_1:16095689-16095708 None:intergenic 35.0%
AGAAATACTACTCAAGTTCC+TGG - chr2_1:16095803-16095822 Msa0197780:intron 35.0%
TGCAGATAATACTGTAGATG+AGG - chr2_1:16095902-16095921 Msa0197780:intron 35.0%
!!! GTTTTTTGACAACTTGTGAC+CGG - chr2_1:16096141-16096160 Msa0197780:intron 35.0%
AGAGGGTAATTCCATCATAA+GGG + chr2_1:16096188-16096207 None:intergenic 35.0%
AAGAGGGTAATTCCATCATA+AGG + chr2_1:16096189-16096208 None:intergenic 35.0%
! TTATGATGGAATTACCCTCT+TGG - chr2_1:16096188-16096207 Msa0197780:intron 35.0%
! GAACGTTGTTCTTTGGATTT+TGG - chr2_1:16096210-16096229 Msa0197780:intron 35.0%
TCAGTATGTACCTATTGTTG+TGG - chr2_1:16096340-16096359 Msa0197780:intron 35.0%
TAACTACAAGTATGCATGTG+TGG + chr2_1:16096371-16096390 None:intergenic 35.0%
TTACAAGAACCGAACATAGT+AGG + chr2_1:16096445-16096464 None:intergenic 35.0%
! TAATTTTCGCTTGAGTGTTC+AGG + chr2_1:16096508-16096527 None:intergenic 35.0%
ACACTTGTGGAATATTCTGT+AGG - chr2_1:16096557-16096576 Msa0197780:CDS 35.0%
! TGATCCAAGTATGATGATGT+TGG + chr2_1:16096732-16096751 None:intergenic 35.0%
TTTGTTGAGAATGGAGAGAG+AGG + chr2_1:16092250-16092269 None:intergenic 40.0%
!! TGCCGTTGTTTTGTTGAGAA+TGG + chr2_1:16092259-16092278 None:intergenic 40.0%
!! TTCTTGGAGAGTTCTGAAGT+GGG + chr2_1:16092333-16092352 None:intergenic 40.0%
AGCTAGCGAAACAACAAAGA+TGG - chr2_1:16092364-16092383 Msa0197780:three_prime_UTR 40.0%
GCTAGCGAAACAACAAAGAT+GGG - chr2_1:16092365-16092384 Msa0197780:three_prime_UTR 40.0%
AGAAGGAAACTGAACGGAAA+AGG - chr2_1:16092433-16092452 Msa0197780:three_prime_UTR 40.0%
TGAACGGAAAAGGAAGGAAT+GGG - chr2_1:16092443-16092462 Msa0197780:three_prime_UTR 40.0%
! GGAATGGGAAGAAAGTATAG+CGG - chr2_1:16092458-16092477 Msa0197780:three_prime_UTR 40.0%
! GAATGGGAAGAAAGTATAGC+GGG - chr2_1:16092459-16092478 Msa0197780:three_prime_UTR 40.0%
! AATGGGAAGAAAGTATAGCG+GGG - chr2_1:16092460-16092479 Msa0197780:three_prime_UTR 40.0%
! AGAAAGTATAGCGGGGATAA+CGG - chr2_1:16092467-16092486 Msa0197780:three_prime_UTR 40.0%
ACGAGACTACGAATTTCTTG+AGG + chr2_1:16092654-16092673 None:intergenic 40.0%
ACTATTGCTGCTACTCTCAA+TGG + chr2_1:16093172-16093191 None:intergenic 40.0%
ATTGAGAGTAGCAGCAATAG+TGG - chr2_1:16093171-16093190 Msa0197780:CDS 40.0%
AGTTACATAATTCGCTGGGT+TGG - chr2_1:16093244-16093263 Msa0197780:CDS 40.0%
CACGAATTCCTTCACGAATT+TGG + chr2_1:16093331-16093350 None:intergenic 40.0%
CAAATTCGTGAAGGAATTCG+TGG - chr2_1:16093329-16093348 Msa0197780:intron 40.0%
GACTGGAGAATGATGAAACA+TGG - chr2_1:16093452-16093471 Msa0197780:intron 40.0%
! TGATGAAACATGGTTGACTC+TGG - chr2_1:16093462-16093481 Msa0197780:intron 40.0%
ATATTGGGCTTTGCTCAACT+TGG - chr2_1:16093588-16093607 Msa0197780:intron 40.0%
TTGCCTGCAGAGAAAACATA+TGG - chr2_1:16093623-16093642 Msa0197780:intron 40.0%
! ATGCCATATGTTTTCTCTGC+AGG + chr2_1:16093629-16093648 None:intergenic 40.0%
TATAAAGCTTCGGTACGCTT+CGG + chr2_1:16093870-16093889 None:intergenic 40.0%
! CGTATAGGGGTATAAAGCTT+CGG + chr2_1:16093880-16093899 None:intergenic 40.0%
GAAGAATTCGGTACGTATAG+GGG + chr2_1:16093893-16093912 None:intergenic 40.0%
GAGAAGAATTCGGTACGTAT+AGG + chr2_1:16093895-16093914 None:intergenic 40.0%
TCGTAATTCGTTCTGGTATG+CGG + chr2_1:16093947-16093966 None:intergenic 40.0%
ATGTATTGCTATGCGGTGAA+TGG - chr2_1:16094632-16094651 Msa0197780:intron 40.0%
AGATACCGGGATTTGATAAG+TGG - chr2_1:16094723-16094742 Msa0197780:intron 40.0%
TGATAAGTGGATCATCGAGA+AGG - chr2_1:16094736-16094755 Msa0197780:intron 40.0%
!! TGAAGTATTGGCAGATCGTA+AGG - chr2_1:16094775-16094794 Msa0197780:intron 40.0%
TAGGTTCAAGGGGATAACTA+TGG - chr2_1:16094892-16094911 Msa0197780:intron 40.0%
!! CTTGAAGATGTCTAGTTCTC+AGG - chr2_1:16094967-16094986 Msa0197780:intron 40.0%
AGCCCAAAGCAAAAACAAGA+GGG + chr2_1:16095017-16095036 None:intergenic 40.0%
ATTGGATCATCTTCTGCAAG+TGG - chr2_1:16095116-16095135 Msa0197780:intron 40.0%
GAGAGAGAGAAAAAATGGAG+GGG - chr2_1:16095225-16095244 Msa0197780:intron 40.0%
AGAGAGAGAAAAAATGGAGG+GGG - chr2_1:16095226-16095245 Msa0197780:intron 40.0%
CCCCAGTAATTTCAGCTAAA+TGG + chr2_1:16095343-16095362 None:intergenic 40.0%
CTATAAAGGGTCGCTCAATT+TGG + chr2_1:16095548-16095567 None:intergenic 40.0%
! CTTGTGATCTTTTCCTCTGA+GGG + chr2_1:16095866-16095885 None:intergenic 40.0%
! AGATCACAAGCTGATTCAGA+AGG - chr2_1:16095876-16095895 Msa0197780:intron 40.0%
CAAAGAACAACGTTCCAAGA+GGG + chr2_1:16096205-16096224 None:intergenic 40.0%
GGTGAACGAAAAATATCCCT+TGG - chr2_1:16096261-16096280 Msa0197780:intron 40.0%
TAGTAGGAATCGTCGAACAA+TGG + chr2_1:16096429-16096448 None:intergenic 40.0%
TCGACGATTCCTACTATGTT+CGG - chr2_1:16096433-16096452 Msa0197780:CDS 40.0%
!! GTTCTTGGAGAGTTCTGAAG+TGG + chr2_1:16092334-16092353 None:intergenic 45.0%
TTCAGAACTCTCCAAGAACG+CGG - chr2_1:16092335-16092354 Msa0197780:three_prime_UTR 45.0%
GGAAACTGAACGGAAAAGGA+AGG - chr2_1:16092437-16092456 Msa0197780:three_prime_UTR 45.0%
CTGAACGGAAAAGGAAGGAA+TGG - chr2_1:16092442-16092461 Msa0197780:three_prime_UTR 45.0%
AGCGAGAATGAGTTTACGGA+AGG - chr2_1:16092515-16092534 Msa0197780:three_prime_UTR 45.0%
GAGTTTACGGAAGGAGAGAA+TGG - chr2_1:16092524-16092543 Msa0197780:three_prime_UTR 45.0%
GGAAGGAGAGAATGGAGAAA+AGG - chr2_1:16092532-16092551 Msa0197780:three_prime_UTR 45.0%
GGAGAGAATGGAGAAAAGGT+TGG - chr2_1:16092536-16092555 Msa0197780:three_prime_UTR 45.0%
AATTCGTAGTCTCGTTCAGC+AGG - chr2_1:16092659-16092678 Msa0197780:three_prime_UTR 45.0%
AATACTATAGCGGTGTAGCG+TGG - chr2_1:16093106-16093125 Msa0197780:CDS 45.0%
TACTCTCAATGGCACTTTGC+GGG + chr2_1:16093161-16093180 None:intergenic 45.0%
CTACTCTCAATGGCACTTTG+CGG + chr2_1:16093162-16093181 None:intergenic 45.0%
GCAATAGTGGCCACTATAAG+CGG - chr2_1:16093184-16093203 Msa0197780:CDS 45.0%
CACTATAAGCGGTTGAAGAG+CGG - chr2_1:16093195-16093214 Msa0197780:CDS 45.0%
GAAGAACACAAGCAAGAGAC+TGG - chr2_1:16093435-16093454 Msa0197780:intron 45.0%
! TTACAGCCGCTGTTTCATGT+CGG - chr2_1:16093498-16093517 Msa0197780:intron 45.0%
AATTGGGCTTCACTCTTGCT+TGG - chr2_1:16093553-16093572 Msa0197780:intron 45.0%
TCTGCAGGCAATTCTCCATT+GGG + chr2_1:16093614-16093633 None:intergenic 45.0%
CACCAAACAGCTATAGTAGC+GGG + chr2_1:16093986-16094005 None:intergenic 45.0%
CCACCAAACAGCTATAGTAG+CGG + chr2_1:16093987-16094006 None:intergenic 45.0%
! TGGCCGCTATTGCAATTTTG+AGG - chr2_1:16094004-16094023 Msa0197780:intron 45.0%
! GGCCGCTATTGCAATTTTGA+GGG - chr2_1:16094005-16094024 Msa0197780:intron 45.0%
GTCAGACAAAGCAAAGGACT+TGG - chr2_1:16094216-16094235 Msa0197780:CDS 45.0%
AGTTAGCCAAAGATGTGCAG+GGG + chr2_1:16094669-16094688 None:intergenic 45.0%
CAGTTAGCCAAAGATGTGCA+GGG + chr2_1:16094670-16094689 None:intergenic 45.0%
GGCAGATCGTAAGGATGATT+TGG - chr2_1:16094784-16094803 Msa0197780:intron 45.0%
! GTATCTAACGGCTGATTCAG+AGG - chr2_1:16094808-16094827 Msa0197780:intron 45.0%
! ATGGAGAAAGCACAAGAGCA+AGG - chr2_1:16094911-16094930 Msa0197780:intron 45.0%
CAGCCCAAAGCAAAAACAAG+AGG + chr2_1:16095018-16095037 None:intergenic 45.0%
GAGAGAGAAAAAATGGAGGG+GGG - chr2_1:16095227-16095246 Msa0197780:intron 45.0%
GGTTGGAGAGTGATCCTATA+GGG - chr2_1:16095248-16095267 Msa0197780:intron 45.0%
GTTGGAGAGTGATCCTATAG+GGG - chr2_1:16095249-16095268 Msa0197780:intron 45.0%
AAAGAACCTACCGATGGATC+CGG + chr2_1:16095277-16095296 None:intergenic 45.0%
GAGCGACCCTTTATAGATGT+AGG - chr2_1:16095552-16095571 Msa0197780:intron 45.0%
TACTCAAGTTCCTGGAGACA+AGG - chr2_1:16095811-16095830 Msa0197780:intron 45.0%
ACTCAAGTTCCTGGAGACAA+GGG - chr2_1:16095812-16095831 Msa0197780:intron 45.0%
! TTTTCCAATCCCTTGTCTCC+AGG + chr2_1:16095824-16095843 None:intergenic 45.0%
!! TCTTTGCTGTTATCCCTCAG+AGG - chr2_1:16095850-16095869 Msa0197780:intron 45.0%
! GCTTGTGATCTTTTCCTCTG+AGG + chr2_1:16095867-16095886 None:intergenic 45.0%
TGAAGTGTAGAGCGTAGAAC+TGG - chr2_1:16096025-16096044 Msa0197780:intron 45.0%
GGGTAATTCCATCATAAGGG+AGG + chr2_1:16096185-16096204 None:intergenic 45.0%
CCAAAGAACAACGTTCCAAG+AGG + chr2_1:16096206-16096225 None:intergenic 45.0%
CCTCTTGGAACGTTGTTCTT+TGG - chr2_1:16096203-16096222 Msa0197780:intron 45.0%
! TGTGGCTTTGCCACAACAAT+AGG + chr2_1:16096353-16096372 None:intergenic 45.0%
! CACTATTGAGCCTTGTAGAG+AGG - chr2_1:16096402-16096421 Msa0197780:CDS 45.0%
GAACAATGGTCCTCTCTACA+AGG + chr2_1:16096415-16096434 None:intergenic 45.0%
! AACAGTGGATTCGGGTTCGT+GGG + chr2_1:16092298-16092317 None:intergenic 50.0%
!! TGGTGGTGGAACAGTGGATT+CGG + chr2_1:16092307-16092326 None:intergenic 50.0%
!! AGTTCTGAAGTGGGTTGTGG+TGG + chr2_1:16092324-16092343 None:intergenic 50.0%
!! GAGAGTTCTGAAGTGGGTTG+TGG + chr2_1:16092327-16092346 None:intergenic 50.0%
TAGCTTCTTCTCCGCGTTCT+TGG + chr2_1:16092349-16092368 None:intergenic 50.0%
GAAAGCAGAGAAGAAAGCGG+CGG - chr2_1:16092395-16092414 Msa0197780:three_prime_UTR 50.0%
! AAGTATAGCGGGGATAACGG+AGG - chr2_1:16092470-16092489 Msa0197780:three_prime_UTR 50.0%
AACGGAGGAAGAGAGAGTGA+AGG - chr2_1:16092485-16092504 Msa0197780:three_prime_UTR 50.0%
AATGGCACTTTGCGGGACTA+TGG + chr2_1:16093154-16093173 None:intergenic 50.0%
CGCTCTTCAACCGCTTATAG+TGG + chr2_1:16093197-16093216 None:intergenic 50.0%
!! GTTGAAGAGCGGTGCTATCA+TGG - chr2_1:16093206-16093225 Msa0197780:CDS 50.0%
!! ACATAATTCGCTGGGTTGGC+CGG - chr2_1:16093248-16093267 Msa0197780:intron 50.0%
!! TACGCCAAAGTACCGCGAAT+CGG + chr2_1:16093299-16093318 None:intergenic 50.0%
AGTACCCGCTGAAATTCGTG+AGG - chr2_1:16093368-16093387 Msa0197780:intron 50.0%
GTACCCGCTGAAATTCGTGA+GGG - chr2_1:16093369-16093388 Msa0197780:intron 50.0%
TACCCGCTGAAATTCGTGAG+GGG - chr2_1:16093370-16093389 Msa0197780:intron 50.0%
CCTCATCCGACATGAAACAG+CGG + chr2_1:16093507-16093526 None:intergenic 50.0%
CTTTGCTCAACTTGGCCCAA+TGG - chr2_1:16093596-16093615 Msa0197780:intron 50.0%
CTCTGCAGGCAATTCTCCAT+TGG + chr2_1:16093615-16093634 None:intergenic 50.0%
TTCGTTCTGGTATGCGGTAC+CGG + chr2_1:16093941-16093960 None:intergenic 50.0%
GTCCCGCTACTATAGCTGTT+TGG - chr2_1:16093981-16094000 Msa0197780:intron 50.0%
CCGCTACTATAGCTGTTTGG+TGG - chr2_1:16093984-16094003 Msa0197780:intron 50.0%
GTGATACCCCTGCACATCTT+TGG - chr2_1:16094660-16094679 Msa0197780:intron 50.0%
CCAGTTAGCCAAAGATGTGC+AGG + chr2_1:16094671-16094690 None:intergenic 50.0%
CCTGCACATCTTTGGCTAAC+TGG - chr2_1:16094668-16094687 Msa0197780:intron 50.0%
ACTTGTGTTTCCAGCTGCAG+TGG + chr2_1:16095150-16095169 None:intergenic 50.0%
GAGAAAAAATGGAGGGGGGT+TGG - chr2_1:16095231-16095250 Msa0197780:intron 50.0%
GGGTTGGAGAGTGATCCTAT+AGG - chr2_1:16095247-16095266 Msa0197780:intron 50.0%
GAGTGATCCTATAGGGGATC+CGG - chr2_1:16095255-16095274 Msa0197780:intron 50.0%
TATAGGGGATCCGGATCCAT+CGG - chr2_1:16095264-16095283 Msa0197780:intron 50.0%
AGTTCCTGGAGACAAGGGAT+TGG - chr2_1:16095817-16095836 Msa0197780:intron 50.0%
! TTGTGACCGGATTTTCTGCG+AGG - chr2_1:16096154-16096173 Msa0197780:intron 50.0%
GTCACACCTCGCAGAAAATC+CGG + chr2_1:16096163-16096182 None:intergenic 50.0%
AGGTGTGACCTCCCTTATGA+TGG - chr2_1:16096174-16096193 Msa0197780:intron 50.0%
TGTTTGCTTGCGCACACCAA+GGG + chr2_1:16096280-16096299 None:intergenic 50.0%
ATGTTTGCTTGCGCACACCA+AGG + chr2_1:16096281-16096300 None:intergenic 50.0%
! GAACAGTGGATTCGGGTTCG+TGG + chr2_1:16092299-16092318 None:intergenic 55.0%
!! GGTGGTGGAACAGTGGATTC+GGG + chr2_1:16092306-16092325 None:intergenic 55.0%
!! TCTGAAGTGGGTTGTGGTGG+TGG + chr2_1:16092321-16092340 None:intergenic 55.0%
GGCGAAGGAGCAGAAGAAGA+AGG - chr2_1:16092416-16092435 Msa0197780:three_prime_UTR 55.0%
GGACTATGGCGTAGTAGTGG+AGG + chr2_1:16093140-16093159 None:intergenic 55.0%
GGTTCGCACGAACCAATTCG+CGG + chr2_1:16093278-16093297 None:intergenic 55.0%
!! CGAACCGATTCGCGGTACTT+TGG - chr2_1:16093292-16093311 Msa0197780:intron 55.0%
ACCCGCTGAAATTCGTGAGG+GGG - chr2_1:16093371-16093390 Msa0197780:intron 55.0%
TCCCCCTCACGAATTTCAGC+GGG + chr2_1:16093375-16093394 None:intergenic 55.0%
CTCCCCCTCACGAATTTCAG+CGG + chr2_1:16093376-16093395 None:intergenic 55.0%
! CCGCTGTTTCATGTCGGATG+AGG - chr2_1:16093504-16093523 Msa0197780:intron 55.0%
!! TCTGGTATGCGGTACCGGTA+CGG + chr2_1:16093936-16093955 None:intergenic 55.0%
CTTTGGCTAACTGGCTGCGA+AGG - chr2_1:16094677-16094696 Msa0197780:intron 55.0%
AACTGGCTGCGAAGGAGAGA+TGG - chr2_1:16094685-16094704 Msa0197780:intron 55.0%
GATGGATCCGGATCCCCTAT+AGG + chr2_1:16095265-16095284 None:intergenic 55.0%
! GTGGATTCGGGTTCGTGGGA+TGG + chr2_1:16092294-16092313 None:intergenic 60.0%
!! GGGTTGTGGTGGTGGAACAG+TGG + chr2_1:16092313-16092332 None:intergenic 60.0%
AGAGAAGAAAGCGGCGGCGA+AGG - chr2_1:16092401-16092420 Msa0197780:three_prime_UTR 60.0%
GCGGGACTATGGCGTAGTAG+TGG + chr2_1:16093143-16093162 None:intergenic 60.0%
CGAACCAATTCGCGGTTCGC+CGG + chr2_1:16093270-16093289 None:intergenic 60.0%
!! GGTTCGTGCGAACCGATTCG+CGG - chr2_1:16093284-16093303 Msa0197780:intron 60.0%
!! CTGGTATGCGGTACCGGTAC+GGG + chr2_1:16093935-16093954 None:intergenic 60.0%
!! GGAAGTGCTTCCACTGCAGC+TGG - chr2_1:16095137-16095156 Msa0197780:intron 60.0%
TTGGCCGGCGAACCGCGAAT+TGG - chr2_1:16093263-16093282 Msa0197780:intron 65.0%
AGCGTACCGCGAACCCGTAC+CGG - chr2_1:16093919-16093938 Msa0197780:intron 65.0%
GGGGATCCGGATCCATCGGT+AGG - chr2_1:16095268-16095287 Msa0197780:intron 65.0%
AGCGGTGTAGCGTGGCAGCG+CGG - chr2_1:16093114-16093133 Msa0197780:CDS 70.0%
!! GCGGTACCGGTACGGGTTCG+CGG + chr2_1:16093928-16093947 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 16092222 16096824 16092222 ID=Msa0197780;Name=Msa0197780
chr2_1 mRNA 16092222 16096824 16092222 ID=Msa0197780-mRNA-1;Parent=Msa0197780;Name=Msa0197780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=63|1|1|1|0|1|3|790|336
chr2_1 exon 16092222 16093266 16092222 ID=Msa0197780-mRNA-1:exon:6719;Parent=Msa0197780-mRNA-1
chr2_1 exon 16094058 16094417 16094058 ID=Msa0197780-mRNA-1:exon:6718;Parent=Msa0197780-mRNA-1
chr2_1 exon 16096366 16096824 16096366 ID=Msa0197780-mRNA-1:exon:6717;Parent=Msa0197780-mRNA-1
chr2_1 five_prime_UTR 16096762 16096824 16096762 ID=Msa0197780-mRNA-1:five_prime_utr;Parent=Msa0197780-mRNA-1
chr2_1 CDS 16096366 16096761 16096366 ID=Msa0197780-mRNA-1:cds;Parent=Msa0197780-mRNA-1
chr2_1 CDS 16094058 16094417 16094058 ID=Msa0197780-mRNA-1:cds;Parent=Msa0197780-mRNA-1
chr2_1 CDS 16093012 16093266 16093012 ID=Msa0197780-mRNA-1:cds;Parent=Msa0197780-mRNA-1
chr2_1 three_prime_UTR 16092222 16093011 16092222 ID=Msa0197780-mRNA-1:three_prime_utr;Parent=Msa0197780-mRNA-1
Gene Sequence

>Msa0197780

ATGGAACCATCCCACGAACCCGAATCCACTGTTCCACCACCACAACCCACTTCAGAACTCTCCAAGAACGCGGAGAAGAAGCTAGCGAAACAACAAAGATGGGAAGCAAAGAAAGCAGAGAAGAAAGCGGCGGCGAAGGAGCAGAAGAAGAAGGAAACTGAACGGAAAAGGAAGGAATGGGAAGAAAGTATAGCGGGGATAACGGAGGAAGAGAGAGTGAAGGTGATTGAAGCGAGAATGAGTTTACGGAAGGAGAGAATGGAGAAAAGGTTGGAAGAGAAAAATGAGAAGAAAGAGAGGCTTGTTAAAGCGAAAGAATTAGGGCAGAATGTTGTTATTGATGTTGAATTTTCTCATCTTATGACTCCTCAAGAAATTCGTAGTCTCGTTCAGCAGATAATGTATTGCTATGCGGTGAATGGAAGATGTGATACCCCTGCACATCTTTGGCTAACTGGCTGCGAAGGAGAGATGGATAATCAATTGAAAAAGATACCGGGATTTGATAAGTGGATCATCGAGAAGGAAAATAAGTCTTATATTGAAGTATTGGCAGATCGTAAGGATGATTTGGTGTATCTAACGGCTGATTCAGAGGATGTTCTTGAAGAGCTTGATTTGAACAAGATATATATAATTGGTGGATTAGTTGATAGGAATAGGTTCAAGGGGATAACTATGGAGAAAGCACAAGAGCAAGGAATTCAAACAGCTAAACTACCTATTGGCAATTTCTTGAAGATGTCTAGTTCTCAGGTTCTTACTGTGAATCAAGTTGTAGAAATACTACTCAAGTTCCTGGAGACAAGGGATTGGAAAACTTCTTTCTTTGCTGTTATCCCTCAGAGGAAAAGATCACAAGCTGATTCAGAAGGAAATGCAGATAATACTGTAGATGAGGACAGAGATGACGATGAAGAGCAAGAGTGTGAAGAAAAAGATGATCTACTGGCAAGTAAAAAGAAATGTGTTGAGGAGATCCCTTCTAACAAACTTGTTGATGAAGTGTAG

Protein sequence

>Msa0197780

MEPSHEPESTVPPPQPTSELSKNAEKKLAKQQRWEAKKAEKKAAAKEQKKKETERKRKEWEESIAGITEEERVKVIEARMSLRKERMEKRLEEKNEKKERLVKAKELGQNVVIDVEFSHLMTPQEIRSLVQQIMYCYAVNGRCDTPAHLWLTGCEGEMDNQLKKIPGFDKWIIEKENKSYIEVLADRKDDLVYLTADSEDVLEELDLNKIYIIGGLVDRNRFKGITMEKAQEQGIQTAKLPIGNFLKMSSSQVLTVNQVVEILLKFLETRDWKTSFFAVIPQRKRSQADSEGNADNTVDEDRDDDEEQECEEKDDLLASKKKCVEEIPSNKLVDEV*