AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0679880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679880 MtrunA17_Chr4g0026061 98.561 139 1 1 1 139 1 138 1.45e-96 274
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0679880 AT1G08380.1 75.373 134 26 3 8 137 10 140 1.43e-66 198

Find 63 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCAATGTGATTGGATT+TGG 0.225162 4_4:-38420799 Msa0679880:CDS
CTGTTCATCTCTCTCACTTT+TGG 0.231594 4_4:-38419277 Msa0679880:CDS
TCCTTCCTTTGAAACCAATT+TGG 0.248618 4_4:+38419254 None:intergenic
TAGAAAACAACAATAATAAT+TGG 0.259562 4_4:-38421460 Msa0679880:five_prime_UTR
CTGCTCTTACTTCACCCTTC+TGG 0.272395 4_4:-38420666 Msa0679880:intron
AAATAAAATAAGATTGGGTT+TGG 0.314112 4_4:+38421503 None:intergenic
ATGGCTGATCTGTTGGCACC+TGG 0.325103 4_4:-38419302 Msa0679880:CDS
ATATAGATTTACAACTAAAA+TGG 0.338114 4_4:-38421366 Msa0679880:exon
GTGATTGGATTTGGGTTGAT+AGG 0.341850 4_4:-38420790 Msa0679880:CDS
AGGAGGGATTTCAATGTGAT+TGG 0.348694 4_4:-38420805 Msa0679880:CDS
CCTTCCAAATAAAATAAGAT+TGG 0.349799 4_4:+38421497 None:intergenic
ATTTCAATGTGATTGGATTT+GGG 0.350561 4_4:-38420798 Msa0679880:CDS
GAAGTAAGAGCAGGAGGAGT+AGG 0.358016 4_4:+38420676 None:intergenic
CAAGGCTGAAAGTAACATAA+AGG 0.369414 4_4:+38419103 None:intergenic
TTGGATTTGGGTTGATAGGT+TGG 0.379649 4_4:-38420786 Msa0679880:CDS
CTTCCAAATAAAATAAGATT+GGG 0.407788 4_4:+38421498 None:intergenic
ATTTACAACATTCATTATGA+AGG 0.429641 4_4:+38418991 None:intergenic
TCTATAGCTGGTATGCTTGA+TGG 0.430936 4_4:+38420757 None:intergenic
AAGTAAGAGCAGGAGGAGTA+GGG 0.437703 4_4:+38420677 None:intergenic
TGGCTGATCTGTTGGCACCT+GGG 0.454791 4_4:-38419301 Msa0679880:CDS
GCCAAATTGGTTTCAAAGGA+AGG 0.457172 4_4:-38419255 Msa0679880:CDS
ATAACCTTTCCAACCGTCCT+AGG 0.469029 4_4:-38421338 Msa0679880:CDS
ATTTGGGTTGATAGGTTGGT+TGG 0.470446 4_4:-38420782 Msa0679880:CDS
CAAGCTATGGCACTTGGAAA+TGG 0.471234 4_4:-38421169 Msa0679880:CDS
AGTGCCATAGCTTGCTTCAA+AGG 0.477357 4_4:+38421178 None:intergenic
CCCTCCTTAGCCAATCCCTC+TGG 0.477675 4_4:+38420821 None:intergenic
TTGAAGCAAGCTATGGCACT+TGG 0.478115 4_4:-38421175 Msa0679880:CDS
GGCTGATCTGTTGGCACCTG+GGG 0.482909 4_4:-38419300 Msa0679880:CDS
TCAAGCATACCAGCTATAGA+TGG 0.485882 4_4:-38420754 Msa0679880:CDS
TTTACTCATGGTAGATTACA+AGG 0.487388 4_4:+38419085 None:intergenic
TGAAACCTCAAGTGATTGCT+AGG 0.491174 4_4:-38421204 Msa0679880:CDS
TTTGGCCAAATTGGTTTCAA+AGG 0.491678 4_4:-38419259 Msa0679880:CDS
AAGGCTGAAAGTAACATAAA+GGG 0.495180 4_4:+38419104 None:intergenic
ATAGATGGTAAAAGTTTGAC+AGG 0.496471 4_4:-38420739 Msa0679880:CDS
ATAGTAGCTTCCAGAGGGAT+TGG 0.520260 4_4:-38420831 Msa0679880:intron
GGTGCATCACGTCTCACCTC+AGG 0.521677 4_4:-38421308 Msa0679880:intron
GCAGGTTATGGCTGATCTGT+TGG 0.521700 4_4:-38419309 Msa0679880:intron
TGAGAGAGATGAACAGCCCC+AGG 0.530883 4_4:+38419284 None:intergenic
GCTTCCAGAGGGATTGGCTA+AGG 0.535701 4_4:-38420825 Msa0679880:CDS
CCAACCGTCCTAGGAATGGC+TGG 0.539875 4_4:-38421329 Msa0679880:CDS
CCAGCCATTCCTAGGACGGT+TGG 0.541005 4_4:+38421329 None:intergenic
GTGATGCACCAGCCATTCCT+AGG 0.542585 4_4:+38421321 None:intergenic
TCCAGAGGGATTGGCTAAGG+AGG 0.546070 4_4:-38420822 Msa0679880:CDS
GGATTCCTAGCAATCACTTG+AGG 0.550278 4_4:+38421199 None:intergenic
GCTATGGCACTTGGAAATGG+TGG 0.550754 4_4:-38421166 Msa0679880:CDS
TCCTAGTACGATGGAAAAGG+TGG 0.552747 4_4:+38419032 None:intergenic
CAGAAGGGTGAAGTAAGAGC+AGG 0.557629 4_4:+38420667 None:intergenic
CTTTCCAACCGTCCTAGGAA+TGG 0.566203 4_4:-38421333 Msa0679880:CDS
CATTCCTAGGACGGTTGGAA+AGG 0.571757 4_4:+38421334 None:intergenic
GAATCCTTTGAAGCAAGCTA+TGG 0.575832 4_4:-38421182 Msa0679880:CDS
CCAGAGGGATTGGCTAAGGA+GGG 0.587448 4_4:-38420821 Msa0679880:CDS
CTATGGCACTTGGAAATGGT+GGG 0.605091 4_4:-38421165 Msa0679880:CDS
AAGGGTGAAGTAAGAGCAGG+AGG 0.608022 4_4:+38420670 None:intergenic
TGCACCAGCCATTCCTAGGA+CGG 0.612860 4_4:+38421325 None:intergenic
CAGATATGTGTGCAAAGTAG+TGG 0.627867 4_4:+38421423 None:intergenic
AGGTGGCAAAGTGTTCTACA+AGG 0.632677 4_4:+38419049 None:intergenic
TATTACTTTGAATTAAACTG+AGG 0.634034 4_4:-38419181 Msa0679880:three_prime_UTR
GAAATGGTGGGAGAGTTACA+TGG 0.656018 4_4:-38421153 Msa0679880:intron
GGTGTATAGTAGCTTCCAGA+GGG 0.658761 4_4:-38420836 Msa0679880:intron
TGGTTTCAAAGGAAGGACTG+AGG 0.666404 4_4:-38419248 Msa0679880:CDS
ATGAAAATGACTAACCAGAA+GGG 0.671062 4_4:+38420652 None:intergenic
TGGTGTATAGTAGCTTCCAG+AGG 0.679041 4_4:-38420837 Msa0679880:intron
ATATGTGTGCAAAGTAGTGG+TGG 0.698145 4_4:+38421426 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTAATTAAT+GGG - chr4_4:38420659-38420678 Msa0679880:intron 0.0%
!!! TTCATTTTATTTATTTAAGT+CGG - chr4_4:38419838-38419857 Msa0679880:intron 10.0%
!! TGATCAAATATATAAATTAT+TGG - chr4_4:38419926-38419945 Msa0679880:intron 10.0%
!!! TTTTATTTTTATTTTTATGG+TGG + chr4_4:38420438-38420457 None:intergenic 10.0%
!!! TTGCATTTAAATATATTTTT+TGG - chr4_4:38421081-38421100 Msa0679880:intron 10.0%
!!! TTTTAATTCATAATAACTTA+TGG - chr4_4:38421300-38421319 Msa0679880:intron 10.0%
!!! TTTTTTTTTTTTTTTACTCA+TGG + chr4_4:38421376-38421395 None:intergenic 10.0%
!! TAGAAAACAACAATAATAAT+TGG - chr4_4:38418986-38419005 Msa0679880:three_prime_UTR 15.0%
!! ATATAGATTTACAACTAAAA+TGG - chr4_4:38419080-38419099 Msa0679880:three_prime_UTR 15.0%
!!! TTTAATTGTAATTTGTTTGT+AGG - chr4_4:38419214-38419233 Msa0679880:exon 15.0%
!! ATCCATATGAATATTTATTT+CGG - chr4_4:38419367-38419386 Msa0679880:intron 15.0%
!!! TATGATTATTTTCATTAACT+TGG + chr4_4:38420120-38420139 None:intergenic 15.0%
!!! TTTTTTTTTCTAACAATCTA+TGG + chr4_4:38420580-38420599 None:intergenic 15.0%
!! AAATTAAATCCATAAAGTTT+AGG - chr4_4:38420598-38420617 Msa0679880:intron 15.0%
!!! AAATCTGGTTTTTTTATTAA+TGG - chr4_4:38420745-38420764 Msa0679880:CDS 15.0%
!!! AATCTGGTTTTTTTATTAAT+GGG - chr4_4:38420746-38420765 Msa0679880:CDS 15.0%
!! AGTAAAATAAAGAAAAGAAA+AGG - chr4_4:38420930-38420949 Msa0679880:intron 15.0%
!! AAAATGTAAAACAAAAAGTT+GGG + chr4_4:38421510-38421529 None:intergenic 15.0%
!! AAAAATGTAAAACAAAAAGT+TGG + chr4_4:38421511-38421530 None:intergenic 15.0%
!! AAATAAAATAAGATTGGGTT+TGG + chr4_4:38418946-38418965 None:intergenic 20.0%
!!! AAACCCAATCTTATTTTATT+TGG - chr4_4:38418945-38418964 Msa0679880:three_prime_UTR 20.0%
!! CTTCCAAATAAAATAAGATT+GGG + chr4_4:38418951-38418970 None:intergenic 20.0%
!!! GGTAATTTTTACTATAAGAT+TGG - chr4_4:38419314-38419333 Msa0679880:intron 20.0%
!! TCCATATGAATATTTATTTC+GGG - chr4_4:38419368-38419387 Msa0679880:intron 20.0%
!!! CATTATTTTGTGAATTGTTA+TGG - chr4_4:38419582-38419601 Msa0679880:intron 20.0%
!!! TAAATGGGGTATTAAAAAAT+TGG + chr4_4:38420055-38420074 None:intergenic 20.0%
!! AAAGTAATGAAAATATGAAG+TGG - chr4_4:38420192-38420211 Msa0679880:intron 20.0%
!! AAATAAATTGTATCCATTGT+TGG + chr4_4:38420530-38420549 None:intergenic 20.0%
!!! ACAATGGATACAATTTATTT+TGG - chr4_4:38420530-38420549 Msa0679880:intron 20.0%
!! AGCTAATGAGAAATTATAAA+TGG - chr4_4:38420704-38420723 Msa0679880:CDS 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - chr4_4:38420730-38420749 Msa0679880:CDS 20.0%
!! TGCTAATGAGAAATTATAAA+TGG - chr4_4:38420791-38420810 Msa0679880:CDS 20.0%
!! GAACTTTAACAAAAAAAATC+TGG - chr4_4:38420730-38420749 Msa0679880:CDS 20.0%
!! TATTACTTTGAATTAAACTG+AGG - chr4_4:38421265-38421284 Msa0679880:intron 20.0%
!! ATTTACAACATTCATTATGA+AGG + chr4_4:38421458-38421477 None:intergenic 20.0%
!! AAATGTAAAACAAAAAGTTG+GGG + chr4_4:38421509-38421528 None:intergenic 20.0%
! CCTTCCAAATAAAATAAGAT+TGG + chr4_4:38418952-38418971 None:intergenic 25.0%
!!! CCAATCTTATTTTATTTGGA+AGG - chr4_4:38418949-38418968 Msa0679880:three_prime_UTR 25.0%
! ATTTCAATGTGATTGGATTT+GGG - chr4_4:38419648-38419667 Msa0679880:intron 25.0%
! ATATTTGATCATTCCTTACA+TGG + chr4_4:38419917-38419936 None:intergenic 25.0%
! TATAAATTATTGGCATCTAG+AGG - chr4_4:38419936-38419955 Msa0679880:intron 25.0%
! TCTAACAGACAATTAAAACA+AGG - chr4_4:38419991-38420010 Msa0679880:intron 25.0%
! AAAGAACTTGTGACTTAAAT+GGG + chr4_4:38420070-38420089 None:intergenic 25.0%
! TAAAGAACTTGTGACTTAAA+TGG + chr4_4:38420071-38420090 None:intergenic 25.0%
! TAATGAAAATATGAAGTGGA+AGG - chr4_4:38420196-38420215 Msa0679880:intron 25.0%
!! GTAAAATTTTACACCAACAA+TGG - chr4_4:38420514-38420533 Msa0679880:intron 25.0%
! TTATTAGCACCTAAACTTTA+TGG + chr4_4:38420610-38420629 None:intergenic 25.0%
!! TTCAAAAGCAGTTTTTGTTA+AGG + chr4_4:38420892-38420911 None:intergenic 25.0%
GCCCGAAATAAATATTCATA+TGG + chr4_4:38419372-38419391 None:intergenic 30.0%
TTGTGAATTGTTATGGCATA+TGG - chr4_4:38419589-38419608 Msa0679880:intron 30.0%
GATTTCAATGTGATTGGATT+TGG - chr4_4:38419647-38419666 Msa0679880:intron 30.0%
! AAACTTTTACCATCTATAGC+TGG + chr4_4:38419704-38419723 None:intergenic 30.0%
ATAGATGGTAAAAGTTTGAC+AGG - chr4_4:38419707-38419726 Msa0679880:intron 30.0%
ATGAAAATGACTAACCAGAA+GGG + chr4_4:38419797-38419816 None:intergenic 30.0%
! TGGGGTATTAAAAAATTGGA+AGG + chr4_4:38420051-38420070 None:intergenic 30.0%
AAGAACTTGTGACTTAAATG+GGG + chr4_4:38420069-38420088 None:intergenic 30.0%
!!! TTTTATTTTTATGGTGGTCG+AGG + chr4_4:38420432-38420451 None:intergenic 30.0%
GTCGGTAATTTCTATCAAAA+CGG + chr4_4:38421023-38421042 None:intergenic 30.0%
!! GTTTTGATAGAAATTACCGA+CGG - chr4_4:38421022-38421041 Msa0679880:intron 30.0%
TCAGTTTATATTACATCCGT+CGG + chr4_4:38421041-38421060 None:intergenic 30.0%
AAGGCTGAAAGTAACATAAA+GGG + chr4_4:38421345-38421364 None:intergenic 30.0%
TTTACTCATGGTAGATTACA+AGG + chr4_4:38421364-38421383 None:intergenic 30.0%
GTTAATGATCATGATACCTG+AGG + chr4_4:38419157-38419176 None:intergenic 35.0%
GATAAAAACGAACTTGTGCA+TGG + chr4_4:38419432-38419451 None:intergenic 35.0%
GTGTTGTATCGTGCATAATA+AGG + chr4_4:38419496-38419515 None:intergenic 35.0%
!! GGACTTTTCTTTGATAGCAT+TGG - chr4_4:38419728-38419747 Msa0679880:intron 35.0%
GATGAAAATGACTAACCAGA+AGG + chr4_4:38419798-38419817 None:intergenic 35.0%
ATCAATCCTACCGTCTAAAT+CGG - chr4_4:38419884-38419903 Msa0679880:intron 35.0%
!!! TGGTTTTGTTCCGATTTAGA+CGG + chr4_4:38419897-38419916 None:intergenic 35.0%
AATCGGAACAAAACCATGTA+AGG - chr4_4:38419901-38419920 Msa0679880:intron 35.0%
! AAGGAATCAGTTAGAGGTAT+TGG - chr4_4:38420215-38420234 Msa0679880:intron 35.0%
!! AGGAATCAGTTAGAGGTATT+GGG - chr4_4:38420216-38420235 Msa0679880:intron 35.0%
GTGAGCTTGTCTTAGTAAAA+AGG - chr4_4:38420243-38420262 Msa0679880:intron 35.0%
TTTCTATCAAAACGGTTCCA+TGG + chr4_4:38421015-38421034 None:intergenic 35.0%
TCAAACATGATGAATTGAGC+AGG - chr4_4:38421119-38421138 Msa0679880:intron 35.0%
ATGATGAATTGAGCAGGTTA+TGG - chr4_4:38421125-38421144 Msa0679880:intron 35.0%
! TTTGGCCAAATTGGTTTCAA+AGG - chr4_4:38421187-38421206 Msa0679880:CDS 35.0%
!! TCCTTCCTTTGAAACCAATT+TGG + chr4_4:38421195-38421214 None:intergenic 35.0%
CAAGGCTGAAAGTAACATAA+AGG + chr4_4:38421346-38421365 None:intergenic 35.0%
! TTTTCCTAGTACGATGGAAA+AGG + chr4_4:38421420-38421439 None:intergenic 35.0%
TCCATCGTACTAGGAAAAAT+TGG - chr4_4:38421422-38421441 Msa0679880:five_prime_UTR 35.0%
! ACCAATTTTTCCTAGTACGA+TGG + chr4_4:38421426-38421445 None:intergenic 35.0%
! CAAAGTAGTGGTGGTTTTTG+TGG + chr4_4:38419014-38419033 None:intergenic 40.0%
ATATGTGTGCAAAGTAGTGG+TGG + chr4_4:38419023-38419042 None:intergenic 40.0%
CAGATATGTGTGCAAAGTAG+TGG + chr4_4:38419026-38419045 None:intergenic 40.0%
TGAAACCTCAAGTGATTGCT+AGG - chr4_4:38419242-38419261 Msa0679880:CDS 40.0%
!! GAATCCTTTGAAGCAAGCTA+TGG - chr4_4:38419264-38419283 Msa0679880:CDS 40.0%
AGGAGGGATTTCAATGTGAT+TGG - chr4_4:38419641-38419660 Msa0679880:intron 40.0%
!! GTGATTGGATTTGGGTTGAT+AGG - chr4_4:38419656-38419675 Msa0679880:intron 40.0%
!! TTGGATTTGGGTTGATAGGT+TGG - chr4_4:38419660-38419679 Msa0679880:intron 40.0%
!! ATTTGGGTTGATAGGTTGGT+TGG - chr4_4:38419664-38419683 Msa0679880:intron 40.0%
TCTATAGCTGGTATGCTTGA+TGG + chr4_4:38419692-38419711 None:intergenic 40.0%
TCAAGCATACCAGCTATAGA+TGG - chr4_4:38419692-38419711 Msa0679880:intron 40.0%
TTTGTTCCGATTTAGACGGT+AGG + chr4_4:38419893-38419912 None:intergenic 40.0%
AAGTGGAAGGAATCAGTTAG+AGG - chr4_4:38420209-38420228 Msa0679880:intron 40.0%
! TGAGCTTATCTCAGTTGGTA+GGG - chr4_4:38420371-38420390 Msa0679880:intron 40.0%
! CTGTTCATCTCTCTCACTTT+TGG - chr4_4:38421169-38421188 Msa0679880:CDS 40.0%
!! TCTCTCACTTTTGGCCAAAT+TGG - chr4_4:38421178-38421197 Msa0679880:CDS 40.0%
! GCCAAATTGGTTTCAAAGGA+AGG - chr4_4:38421191-38421210 Msa0679880:CDS 40.0%
ATAACCTTTCCAACCGTCCT+AGG - chr4_4:38419108-38419127 Msa0679880:three_prime_UTR 45.0%
GGATTCCTAGCAATCACTTG+AGG + chr4_4:38419250-38419269 None:intergenic 45.0%
!! AGTGCCATAGCTTGCTTCAA+AGG + chr4_4:38419271-38419290 None:intergenic 45.0%
TTGAAGCAAGCTATGGCACT+TGG - chr4_4:38419271-38419290 Msa0679880:CDS 45.0%
CAAGCTATGGCACTTGGAAA+TGG - chr4_4:38419277-38419296 Msa0679880:CDS 45.0%
CTATGGCACTTGGAAATGGT+GGG - chr4_4:38419281-38419300 Msa0679880:CDS 45.0%
! GAAATGGTGGGAGAGTTACA+TGG - chr4_4:38419293-38419312 Msa0679880:CDS 45.0%
TGGTGTATAGTAGCTTCCAG+AGG - chr4_4:38419609-38419628 Msa0679880:intron 45.0%
GGTGTATAGTAGCTTCCAGA+GGG - chr4_4:38419610-38419629 Msa0679880:intron 45.0%
ATAGTAGCTTCCAGAGGGAT+TGG - chr4_4:38419615-38419634 Msa0679880:intron 45.0%
AAGTAAGAGCAGGAGGAGTA+GGG + chr4_4:38419772-38419791 None:intergenic 45.0%
GTGAGCTTATCTCAGTTGGT+AGG - chr4_4:38420370-38420389 Msa0679880:intron 45.0%
AGTAACCCGAGTTCAAGTCT+CGG + chr4_4:38420961-38420980 None:intergenic 45.0%
AAAACGGTTCCATGGTCTAG+CGG + chr4_4:38421007-38421026 None:intergenic 45.0%
TGGTTTCAAAGGAAGGACTG+AGG - chr4_4:38421198-38421217 Msa0679880:CDS 45.0%
! AGGTGGCAAAGTGTTCTACA+AGG + chr4_4:38421400-38421419 None:intergenic 45.0%
TCCTAGTACGATGGAAAAGG+TGG + chr4_4:38421417-38421436 None:intergenic 45.0%
!!! TAGTTTTATTTTTATTTTTA+TGG + chr4_4:38420441-38420460 None:intergenic 5.0%
!!! CATTTTTTTTTTTTAATTAA+TGG - chr4_4:38420658-38420677 Msa0679880:intron 5.0%
CATTCCTAGGACGGTTGGAA+AGG + chr4_4:38419115-38419134 None:intergenic 50.0%
CTTTCCAACCGTCCTAGGAA+TGG - chr4_4:38419113-38419132 Msa0679880:three_prime_UTR 50.0%
GCTATGGCACTTGGAAATGG+TGG - chr4_4:38419280-38419299 Msa0679880:CDS 50.0%
GAAGTAAGAGCAGGAGGAGT+AGG + chr4_4:38419773-38419792 None:intergenic 50.0%
AAGGGTGAAGTAAGAGCAGG+AGG + chr4_4:38419779-38419798 None:intergenic 50.0%
CAGAAGGGTGAAGTAAGAGC+AGG + chr4_4:38419782-38419801 None:intergenic 50.0%
CTGCTCTTACTTCACCCTTC+TGG - chr4_4:38419780-38419799 Msa0679880:intron 50.0%
CCAACTGAGATAAGCTCACG+AGG + chr4_4:38420369-38420388 None:intergenic 50.0%
CCTCGTGAGCTTATCTCAGT+TGG - chr4_4:38420366-38420385 Msa0679880:intron 50.0%
GTTCCACCGAGACTTGAACT+CGG - chr4_4:38420952-38420971 Msa0679880:intron 50.0%
TTCCACCGAGACTTGAACTC+GGG - chr4_4:38420953-38420972 Msa0679880:intron 50.0%
GAGACTTGAACTCGGGTTAC+TGG - chr4_4:38420960-38420979 Msa0679880:intron 50.0%
TGGTCTAGCGGTTAGGACAT+TGG + chr4_4:38420995-38421014 None:intergenic 50.0%
ATGTCCTAACCGCTAGACCA+TGG - chr4_4:38420995-38421014 Msa0679880:intron 50.0%
GCAGGTTATGGCTGATCTGT+TGG - chr4_4:38421137-38421156 Msa0679880:intron 50.0%
! GCCACCTTTTCCATCGTACT+AGG - chr4_4:38421413-38421432 Msa0679880:five_prime_UTR 50.0%
TGCACCAGCCATTCCTAGGA+CGG + chr4_4:38419124-38419143 None:intergenic 55.0%
GTGATGCACCAGCCATTCCT+AGG + chr4_4:38419128-38419147 None:intergenic 55.0%
!! GCTTCCAGAGGGATTGGCTA+AGG - chr4_4:38419621-38419640 Msa0679880:intron 55.0%
!! TCCAGAGGGATTGGCTAAGG+AGG - chr4_4:38419624-38419643 Msa0679880:intron 55.0%
!! CCAGAGGGATTGGCTAAGGA+GGG - chr4_4:38419625-38419644 Msa0679880:intron 55.0%
AACCCGAGTTCAAGTCTCGG+TGG + chr4_4:38420958-38420977 None:intergenic 55.0%
GGTTCCATGGTCTAGCGGTT+AGG + chr4_4:38421002-38421021 None:intergenic 55.0%
ATGGCTGATCTGTTGGCACC+TGG - chr4_4:38421144-38421163 Msa0679880:intron 55.0%
TGGCTGATCTGTTGGCACCT+GGG - chr4_4:38421145-38421164 Msa0679880:intron 55.0%
TGAGAGAGATGAACAGCCCC+AGG + chr4_4:38421165-38421184 None:intergenic 55.0%
CCAGCCATTCCTAGGACGGT+TGG + chr4_4:38419120-38419139 None:intergenic 60.0%
CCAACCGTCCTAGGAATGGC+TGG - chr4_4:38419117-38419136 Msa0679880:three_prime_UTR 60.0%
GGTGCATCACGTCTCACCTC+AGG - chr4_4:38419138-38419157 Msa0679880:three_prime_UTR 60.0%
CCCTCCTTAGCCAATCCCTC+TGG + chr4_4:38419628-38419647 None:intergenic 60.0%
GGCTGATCTGTTGGCACCTG+GGG - chr4_4:38421146-38421165 Msa0679880:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 38418936 38421532 38418936 ID=Msa0679880;Name=Msa0679880
chr4_4 mRNA 38418936 38421532 38418936 ID=Msa0679880-mRNA-1;Parent=Msa0679880;Name=Msa0679880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=163|1|1|1|1|1|4|295|139
chr4_4 exon 38418936 38419327 38418936 ID=Msa0679880-mRNA-1:exon:9037;Parent=Msa0679880-mRNA-1
chr4_4 exon 38420667 38420849 38420667 ID=Msa0679880-mRNA-1:exon:9036;Parent=Msa0679880-mRNA-1
chr4_4 exon 38421154 38421232 38421154 ID=Msa0679880-mRNA-1:exon:9035;Parent=Msa0679880-mRNA-1
chr4_4 exon 38421309 38421532 38421309 ID=Msa0679880-mRNA-1:exon:9034;Parent=Msa0679880-mRNA-1
chr4_4 five_prime_UTR 38421370 38421532 38421370 ID=Msa0679880-mRNA-1:five_prime_utr;Parent=Msa0679880-mRNA-1
chr4_4 CDS 38421309 38421369 38421309 ID=Msa0679880-mRNA-1:cds;Parent=Msa0679880-mRNA-1
chr4_4 CDS 38421154 38421232 38421154 ID=Msa0679880-mRNA-1:cds;Parent=Msa0679880-mRNA-1
chr4_4 CDS 38420667 38420849 38420667 ID=Msa0679880-mRNA-1:cds;Parent=Msa0679880-mRNA-1
chr4_4 CDS 38419231 38419327 38419231 ID=Msa0679880-mRNA-1:cds;Parent=Msa0679880-mRNA-1
chr4_4 three_prime_UTR 38418936 38419230 38418936 ID=Msa0679880-mRNA-1:three_prime_utr;Parent=Msa0679880-mRNA-1
Gene Sequence

>Msa0679880

ATGGCAGCAATAACCTTTCCAACCGTCCTAGGAATGGCTGGTGCATCACGTCTCACCTCAGGATTTGTGAAACCTCAAGTGATTGCTAGGAATCCTTTGAAGCAAGCTATGGCACTTGGAAATGGTGGGAGAGTTACATGTAGCTTCCAGAGGGATTGGCTAAGGAGGGATTTCAATGTGATTGGATTTGGGTTGATAGGTTGGTTGGCACCATCAAGCATACCAGCTATAGATGGTAAAAGTTTGACAGGACTTTTCTTTGATAGCATTGGAACTGAACTTGCTCACTTCCCTACTCCTCCTGCTCTTACTTCACCCTTCTGGTTATGGCTGATCTGTTGGCACCTGGGGCTGTTCATCTCTCTCACTTTTGGCCAAATTGGTTTCAAAGGAAGGACTGAGGATTACTTTCAGAAATGA

Protein sequence

>Msa0679880

MAAITFPTVLGMAGASRLTSGFVKPQVIARNPLKQAMALGNGGRVTCSFQRDWLRRDFNVIGFGLIGWLAPSSIPAIDGKSLTGLFFDSIGTELAHFPTPPALTSPFWLWLICWHLGLFISLTFGQIGFKGRTEDYFQK*