Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991930 | XP_003603454.2 | 95.855 | 193 | 7 | 1 | 1 | 193 | 1 | 192 | 2.33e-133 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991930 | G7JBN9 | 95.855 | 193 | 7 | 1 | 1 | 193 | 1 | 192 | 1.11e-133 | 381 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050380 | Msa0991930 | 0.807305 | 5.394534e-50 | -8.615850e-47 |
| Msa0072000 | Msa0991930 | 0.816380 | 5.697406e-52 | -8.615850e-47 |
| Msa0610590 | Msa0991930 | 0.804359 | 2.243933e-49 | -8.615850e-47 |
| Msa0651190 | Msa0991930 | 0.808716 | 2.701815e-50 | -8.615850e-47 |
| Msa0664950 | Msa0991930 | 0.800862 | 1.180978e-48 | -8.615850e-47 |
| Msa0698930 | Msa0991930 | 0.809002 | 2.346492e-50 | -8.615850e-47 |
| Msa0701010 | Msa0991930 | 0.818548 | 1.850764e-52 | -8.615850e-47 |
| Msa0743720 | Msa0991930 | 0.816571 | 5.164008e-52 | -8.615850e-47 |
| Msa0768290 | Msa0991930 | 0.831830 | 1.336340e-55 | -8.615850e-47 |
| Msa0768370 | Msa0991930 | 0.809614 | 1.734480e-50 | -8.615850e-47 |
| Msa0787470 | Msa0991930 | 0.808966 | 2.388948e-50 | -8.615850e-47 |
| Msa0828940 | Msa0991930 | 0.820197 | 7.789625e-53 | -8.615850e-47 |
| Msa0131770 | Msa0991930 | 0.800135 | 1.660931e-48 | -8.615850e-47 |
| Msa0178960 | Msa0991930 | 0.825705 | 4.052507e-54 | -8.615850e-47 |
| Msa0226890 | Msa0991930 | 0.811546 | 6.631617e-51 | -8.615850e-47 |
| Msa0365490 | Msa0991930 | 0.826737 | 2.302323e-54 | -8.615850e-47 |
| Msa0379640 | Msa0991930 | 0.815760 | 7.839481e-52 | -8.615850e-47 |
| Msa0392180 | Msa0991930 | 0.808299 | 3.316034e-50 | -8.615850e-47 |
| Msa0416650 | Msa0991930 | 0.812458 | 4.197765e-51 | -8.615850e-47 |
| Msa0424320 | Msa0991930 | 0.818589 | 1.811393e-52 | -8.615850e-47 |
| Msa0449760 | Msa0991930 | 0.800135 | 1.660760e-48 | -8.615850e-47 |
| Msa0458440 | Msa0991930 | 0.815261 | 1.012140e-51 | -8.615850e-47 |
| Msa0466390 | Msa0991930 | 0.826173 | 3.137637e-54 | -8.615850e-47 |
| Msa0991930 | Msa0992490 | -0.811723 | 6.070422e-51 | -8.615850e-47 |
| Msa0991930 | Msa1012830 | 0.804644 | 1.957119e-49 | -8.615850e-47 |
| Msa0991930 | Msa1026760 | 0.802991 | 4.312962e-49 | -8.615850e-47 |
| Msa0991930 | Msa1026790 | 0.804186 | 2.437794e-49 | -8.615850e-47 |
| Msa0991930 | Msa1075080 | -0.802661 | 5.046922e-49 | -8.615850e-47 |
| Msa0991930 | Msa1075220 | -0.837084 | 6.403624e-57 | -8.615850e-47 |
| Msa0991930 | Msa1082580 | 0.820883 | 5.420890e-53 | -8.615850e-47 |
| Msa0991930 | Msa1085740 | 0.800478 | 1.414735e-48 | -8.615850e-47 |
| Msa0991930 | Msa1087470 | 0.802381 | 5.764428e-49 | -8.615850e-47 |
| Msa0991930 | Msa1090260 | 0.806030 | 1.002703e-49 | -8.615850e-47 |
| Msa0991930 | Msa1116130 | -0.808854 | 2.523420e-50 | -8.615850e-47 |
| Msa0991930 | Msa1131940 | -0.803071 | 4.152837e-49 | -8.615850e-47 |
| Msa0991930 | Msa1139000 | -0.812731 | 3.658332e-51 | -8.615850e-47 |
| Msa0991930 | Msa1156020 | 0.811314 | 7.447260e-51 | -8.615850e-47 |
| Msa0991930 | Msa1162550 | -0.841650 | 4.177346e-58 | -8.615850e-47 |
| Msa0991930 | Msa1166500 | -0.800337 | 1.510912e-48 | -8.615850e-47 |
| Msa0991930 | Msa1174040 | 0.802364 | 5.809436e-49 | -8.615850e-47 |
| Msa0991930 | Msa1233500 | 0.812248 | 4.663345e-51 | -8.615850e-47 |
| Msa0991930 | Msa1233890 | 0.827661 | 1.383239e-54 | -8.615850e-47 |
| Msa0991930 | Msa1239530 | 0.806340 | 8.624868e-50 | -8.615850e-47 |
| Msa0991930 | Msa1244250 | 0.810703 | 1.010207e-50 | -8.615850e-47 |
| Msa0991930 | Msa1245830 | 0.802111 | 6.549631e-49 | -8.615850e-47 |
| Msa0991930 | Msa1279210 | 0.800129 | 1.665672e-48 | -8.615850e-47 |
| Msa0991930 | Msa1284680 | 0.807904 | 4.025212e-50 | -8.615850e-47 |
| Msa0991930 | Msa1284710 | 0.807491 | 4.925814e-50 | -8.615850e-47 |
| Msa0991930 | Msa1296940 | 0.817120 | 3.888737e-52 | -8.615850e-47 |
| Msa0991930 | Msa1348950 | 0.820667 | 6.077593e-53 | -8.615850e-47 |
| Msa0991930 | Msa1359650 | -0.817734 | 2.828483e-52 | -8.615850e-47 |
| Msa0991930 | Msa1362880 | 0.811428 | 7.037680e-51 | -8.615850e-47 |
| Msa0991930 | Msa1369530 | 0.809075 | 2.263628e-50 | -8.615850e-47 |
| Msa0991930 | Msa1393040 | 0.818427 | 1.970986e-52 | -8.615850e-47 |
| Msa0991930 | Msa1393410 | 0.802274 | 6.065064e-49 | -8.615850e-47 |
| Msa0991930 | Msa1408790 | 0.807134 | 5.863312e-50 | -8.615850e-47 |
| Msa0991930 | Msa1435420 | 0.800095 | 1.692247e-48 | -8.615850e-47 |
| Msa0991930 | Msa1436040 | 0.803186 | 3.931861e-49 | -8.615850e-47 |
| Msa0991930 | Msa1451620 | -0.851966 | 6.287259e-61 | -8.615850e-47 |
| Msa0991930 | Msa1459950 | 0.800717 | 1.264307e-48 | -8.615850e-47 |
| Msa0991930 | Msa1464940 | 0.816518 | 5.306585e-52 | -8.615850e-47 |
| Msa0278110 | Msa0991930 | 0.808142 | 3.581075e-50 | -8.615850e-47 |
| Msa0288100 | Msa0991930 | 0.808070 | 3.710879e-50 | -8.615850e-47 |
| Msa0315290 | Msa0991930 | 0.827271 | 1.715213e-54 | -8.615850e-47 |
| Msa0344830 | Msa0991930 | 0.812588 | 3.931041e-51 | -8.615850e-47 |
| Msa0523940 | Msa0991930 | 0.830881 | 2.287384e-55 | -8.615850e-47 |
| Msa0536220 | Msa0991930 | 0.817633 | 2.979714e-52 | -8.615850e-47 |
| Msa0578970 | Msa0991930 | 0.807329 | 5.329919e-50 | -8.615850e-47 |
| Msa0585230 | Msa0991930 | 0.806753 | 7.058523e-50 | -8.615850e-47 |
| Msa0585700 | Msa0991930 | 0.806809 | 6.868538e-50 | -8.615850e-47 |
| Msa0599890 | Msa0991930 | 0.816350 | 5.787601e-52 | -8.615850e-47 |
| Msa0842650 | Msa0991930 | 0.807724 | 4.396107e-50 | -8.615850e-47 |
| Msa0877250 | Msa0991930 | 0.820704 | 5.958807e-53 | -8.615850e-47 |
| Msa0907070 | Msa0991930 | 0.808667 | 2.766913e-50 | -8.615850e-47 |
| Msa0942080 | Msa0991930 | -0.807693 | 4.463022e-50 | -8.615850e-47 |
| Msa0966750 | Msa0991930 | 0.802292 | 6.011351e-49 | -8.615850e-47 |
| Msa0969520 | Msa0991930 | 0.817230 | 3.673499e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991930 | MtrunA17_Chr3g0138241 | 95.855 | 193 | 7 | 1 | 1 | 193 | 1 | 192 | 2.14e-137 | 381 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0991930 | AT2G25605.1 | 72.637 | 201 | 46 | 2 | 1 | 193 | 1 | 200 | 1.93e-107 | 306 |
Find 61 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGAAAGGTCAACCTATTT+TGG | 0.145914 | 6_4:-58381551 | Msa0991930:CDS |
| TTATTATGTGTAAATAAATT+AGG | 0.166009 | 6_4:-58378012 | Msa0991930:three_prime_UTR |
| TTCTACTTATCGAGTGTTAT+TGG | 0.170522 | 6_4:-58379120 | Msa0991930:CDS |
| ACAAATATAAACAGCGGATA+TGG | 0.209609 | 6_4:-58378869 | Msa0991930:CDS |
| TGGCGACTCCTGCAACATTT+TGG | 0.246997 | 6_4:+58377940 | None:intergenic |
| GGCAGCGGGTTGGCGGTTGC+TGG | 0.247084 | 6_4:-58378238 | Msa0991930:intron |
| GCGGTTGCTGGGATGGTTAT+TGG | 0.255862 | 6_4:-58378226 | Msa0991930:CDS |
| GACCAGCCTCGTCAAGATTA+TGG | 0.288376 | 6_4:-58381686 | Msa0991930:CDS |
| TATTATGTGTAAATAAATTA+GGG | 0.299195 | 6_4:-58378011 | Msa0991930:three_prime_UTR |
| ATCAAAGAATGGGCCAAAAT+AGG | 0.335461 | 6_4:+58381538 | None:intergenic |
| TCTACTTATCGAGTGTTATT+GGG | 0.353248 | 6_4:-58379119 | Msa0991930:CDS |
| ATTTCAATTTACAATGGTTC+AGG | 0.356398 | 6_4:-58378814 | Msa0991930:intron |
| CGGGTTGGCGGTTGCTGGGA+TGG | 0.370581 | 6_4:-58378233 | Msa0991930:CDS |
| GCAATTTACCAAAATGTTGC+AGG | 0.388626 | 6_4:-58377948 | Msa0991930:three_prime_UTR |
| AAATAAATTAGGGCTATAAT+TGG | 0.403674 | 6_4:-58378001 | Msa0991930:three_prime_UTR |
| GCAGCGGGTTGGCGGTTGCT+GGG | 0.405129 | 6_4:-58378237 | Msa0991930:intron |
| AAACAGAACCTCTCCCTTCA+AGG | 0.409265 | 6_4:-58381923 | Msa0991930:CDS |
| CCCATTCTTTGATCTCGGTC+AGG | 0.431850 | 6_4:-58381528 | Msa0991930:intron |
| CCGACTTTCTCTCTTCTGAC+TGG | 0.451688 | 6_4:-58381885 | Msa0991930:CDS |
| ACATCTAATCTTGGACCAAA+TGG | 0.454214 | 6_4:+58381841 | None:intergenic |
| CAAATATAAACAGCGGATAT+GGG | 0.461988 | 6_4:-58378868 | Msa0991930:CDS |
| GTCGTGCTCACATCTAATCT+TGG | 0.463668 | 6_4:+58381832 | None:intergenic |
| AATGTAATGTATGCAATTGA+AGG | 0.464515 | 6_4:+58377851 | None:intergenic |
| GATCATGAGCAGTTTGTTCG+TGG | 0.467792 | 6_4:-58379081 | Msa0991930:CDS |
| AAATAGGTTGACCTTTCAAA+AGG | 0.471757 | 6_4:+58381554 | None:intergenic |
| TTTGGCCCATTCTTTGATCT+CGG | 0.472760 | 6_4:-58381533 | Msa0991930:CDS |
| CTCTCCATGTGCAGTTTGAA+AGG | 0.472930 | 6_4:-58379163 | Msa0991930:intron |
| AGACGTACTAGGATGTCGTT+TGG | 0.474630 | 6_4:-58381997 | Msa0991930:exon |
| AGAGTCTCTGCTTCACGACT+TGG | 0.474889 | 6_4:-58378198 | Msa0991930:CDS |
| TGAAATATCTCCTCTTCCTC+TGG | 0.475702 | 6_4:+58378831 | None:intergenic |
| AGGAAGTCGACCAGAGGAAG+AGG | 0.484758 | 6_4:-58378841 | Msa0991930:CDS |
| GAGCAGTTTGTTCGTGGAAG+AGG | 0.488716 | 6_4:-58379075 | Msa0991930:intron |
| CAGTCAGAAGAGAGAAAGTC+GGG | 0.495359 | 6_4:+58381886 | None:intergenic |
| TTCCATAATCTTGACGAGGC+TGG | 0.496114 | 6_4:+58381684 | None:intergenic |
| GTTCTGTTCGAAGACGTACT+AGG | 0.501375 | 6_4:-58382008 | Msa0991930:five_prime_UTR |
| AACATTTGCAGAGACCTTGA+AGG | 0.505620 | 6_4:+58381909 | None:intergenic |
| TGTTGTTATTGGCAGCGGGT+TGG | 0.517288 | 6_4:-58378248 | Msa0991930:intron |
| CTGCAAACAAGGTGTGGCAG+AGG | 0.520626 | 6_4:+58381952 | None:intergenic |
| TGCAGAGACCTTGAAGGGAG+AGG | 0.524647 | 6_4:+58381915 | None:intergenic |
| TGTTATTGGCAGCGGGTTGG+CGG | 0.525362 | 6_4:-58378245 | Msa0991930:intron |
| TCCTTCGAATTCACTTGAAG+AGG | 0.526951 | 6_4:+58382052 | None:intergenic |
| GACGTACTAGGATGTCGTTT+GGG | 0.532916 | 6_4:-58381996 | Msa0991930:exon |
| ACAAGGTGTGGCAGAGGACA+AGG | 0.537666 | 6_4:+58381958 | None:intergenic |
| ACCTGACCGAGATCAAAGAA+TGG | 0.552523 | 6_4:+58381527 | None:intergenic |
| ATAACACTCGATAAGTAGAA+TGG | 0.554445 | 6_4:+58379123 | None:intergenic |
| CCACGTGGGCACAGATGAAG+TGG | 0.555727 | 6_4:-58382085 | None:intergenic |
| CCTGACCGAGATCAAAGAAT+GGG | 0.560157 | 6_4:+58381528 | None:intergenic |
| TTGCGCAGGACTGTTTACAT+TGG | 0.561209 | 6_4:+58377967 | None:intergenic |
| GTCAGTTTCATGATGCTCCA+TGG | 0.578190 | 6_4:-58378128 | Msa0991930:three_prime_UTR |
| AAACAGCGGATATGGGTTCG+AGG | 0.578896 | 6_4:-58378861 | Msa0991930:CDS |
| GGAGATATTTCAATTTACAA+TGG | 0.592072 | 6_4:-58378820 | Msa0991930:CDS |
| CCAGTCAGAAGAGAGAAAGT+CGG | 0.600808 | 6_4:+58381885 | None:intergenic |
| TAACTGAAAATGAGTAATGA+CGG | 0.601700 | 6_4:+58377819 | None:intergenic |
| TAGTATATGCGTGAAACACA+TGG | 0.606365 | 6_4:+58377920 | None:intergenic |
| TCCTCTTCAAGTGAATTCGA+AGG | 0.618764 | 6_4:-58382053 | Msa0991930:five_prime_UTR |
| TCGAGTGTTATTGGGTCACA+AGG | 0.619031 | 6_4:-58379111 | Msa0991930:CDS |
| CTGTTTACATTGGATCAGCA+AGG | 0.644416 | 6_4:+58377977 | None:intergenic |
| ACATTTGCAGAGACCTTGAA+GGG | 0.644599 | 6_4:+58381910 | None:intergenic |
| AACAGAACAAATATAAACAG+CGG | 0.663509 | 6_4:-58378875 | Msa0991930:intron |
| TCAATTCCATAATCTTGACG+AGG | 0.676746 | 6_4:+58381680 | None:intergenic |
| GGTTCGAGGAAGTCGACCAG+AGG | 0.690585 | 6_4:-58378847 | Msa0991930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAAAAATAAAATAAA+TGG | - | chr6_4:58379946-58379965 | Msa0991930:intron | 0.0% |
| !! | TTTATACTTCAATATATATT+TGG | - | chr6_4:58378631-58378650 | Msa0991930:intron | 10.0% |
| !! | TTATTATGTGTAAATAAATT+AGG | - | chr6_4:58381891-58381910 | Msa0991930:CDS | 10.0% |
| !! | TATTATGTGTAAATAAATTA+GGG | - | chr6_4:58381892-58381911 | Msa0991930:CDS | 10.0% |
| !! | ATTAATGCAATTCAAATATA+TGG | - | chr6_4:58378564-58378583 | Msa0991930:intron | 15.0% |
| !!! | CTTTTAAGTTTTTTAAAATG+AGG | - | chr6_4:58379203-58379222 | Msa0991930:intron | 15.0% |
| !!! | CTATTCTATATTTTAAAAAG+AGG | + | chr6_4:58380090-58380109 | None:intergenic | 15.0% |
| !! | AAATATAATCTTAAAAATCG+TGG | - | chr6_4:58380493-58380512 | Msa0991930:intron | 15.0% |
| !!! | TTAATATTCTTTTTCGTATT+TGG | - | chr6_4:58380978-58380997 | Msa0991930:intron | 15.0% |
| !! | AAACATTCTAAATGAAAATA+GGG | + | chr6_4:58381150-58381169 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTAAATTATTAC+CGG | + | chr6_4:58381326-58381345 | None:intergenic | 15.0% |
| !! | AATTTACTAACAATCGAAAA+AGG | + | chr6_4:58378132-58378151 | None:intergenic | 20.0% |
| !!! | CATTTTTTATTATAGTTTGC+TGG | - | chr6_4:58378319-58378338 | Msa0991930:intron | 20.0% |
| !!! | GATACATGATACATTTTTTT+AGG | - | chr6_4:58378674-58378693 | Msa0991930:intron | 20.0% |
| !! | ATAATGTAAGGAAACAAAAA+AGG | - | chr6_4:58378751-58378770 | Msa0991930:intron | 20.0% |
| !! | GATTAAAATTACAATCATCT+CGG | - | chr6_4:58378803-58378822 | Msa0991930:intron | 20.0% |
| !! | TCTTAAAACAAGAAAAAACT+TGG | - | chr6_4:58379862-58379881 | Msa0991930:intron | 20.0% |
| !! | AAATTTGAACACAATTTGAA+TGG | + | chr6_4:58380416-58380435 | None:intergenic | 20.0% |
| !! | GTAAATGATGTTAAAAATTG+TGG | - | chr6_4:58380515-58380534 | Msa0991930:intron | 20.0% |
| !! | GGTGATTAATTCATATAATA+CGG | + | chr6_4:58380577-58380596 | None:intergenic | 20.0% |
| !! | CAAACATTCTAAATGAAAAT+AGG | + | chr6_4:58381151-58381170 | None:intergenic | 20.0% |
| !! | ATTATTCATAAACCACTTAT+TGG | + | chr6_4:58381218-58381237 | None:intergenic | 20.0% |
| !!! | CATTTTTTAAATTATTACCG+GGG | + | chr6_4:58381324-58381343 | None:intergenic | 20.0% |
| !!! | CCATTTTTTAAATTATTACC+GGG | + | chr6_4:58381325-58381344 | None:intergenic | 20.0% |
| !! | TCAAATGTAATTATATGAGT+TGG | - | chr6_4:58381351-58381370 | Msa0991930:intron | 20.0% |
| !!! | ATGTACAAATTTTACAGATT+GGG | + | chr6_4:58381851-58381870 | None:intergenic | 20.0% |
| !!! | TATGTACAAATTTTACAGAT+TGG | + | chr6_4:58381852-58381871 | None:intergenic | 20.0% |
| !! | AAATAAATTAGGGCTATAAT+TGG | - | chr6_4:58381902-58381921 | Msa0991930:CDS | 20.0% |
| ! | TTGAACATGTGTTTATAAGT+GGG | - | chr6_4:58378479-58378498 | Msa0991930:intron | 25.0% |
| ! | AAGCATCAAAAGAAACTATT+AGG | - | chr6_4:58378719-58378738 | Msa0991930:intron | 25.0% |
| !!! | TTTTTAAAATGAGGAATGCT+AGG | - | chr6_4:58379212-58379231 | Msa0991930:intron | 25.0% |
| !!! | TTTTAAAATGAGGAATGCTA+GGG | - | chr6_4:58379213-58379232 | Msa0991930:intron | 25.0% |
| ! | AGAAAACACTAGTAGAAAAA+GGG | + | chr6_4:58379619-58379638 | None:intergenic | 25.0% |
| ! | AAGAAAACACTAGTAGAAAA+AGG | + | chr6_4:58379620-58379639 | None:intergenic | 25.0% |
| ! | TTTCTTAAATGAATTCGATC+TGG | - | chr6_4:58379718-58379737 | Msa0991930:intron | 25.0% |
| ! | TTCTTAAATGAATTCGATCT+GGG | - | chr6_4:58379719-58379738 | Msa0991930:intron | 25.0% |
| !!! | TTTATTTTGGATTGTCGTTT+TGG | - | chr6_4:58379742-58379761 | Msa0991930:intron | 25.0% |
| !!! | TTATTTTGGATTGTCGTTTT+GGG | - | chr6_4:58379743-58379762 | Msa0991930:intron | 25.0% |
| ! | CTACAACATTTAATCATGTT+TGG | - | chr6_4:58379825-58379844 | Msa0991930:intron | 25.0% |
| !!! | TTTTAAAAAGAGGAATGCTA+GGG | + | chr6_4:58380080-58380099 | None:intergenic | 25.0% |
| !!! | ATTTTAAAAAGAGGAATGCT+AGG | + | chr6_4:58380081-58380100 | None:intergenic | 25.0% |
| ! | TATGCTTAATCATTCACTAA+TGG | + | chr6_4:58380160-58380179 | None:intergenic | 25.0% |
| !!! | TTGTAGCTTCTAAAATATCA+CGG | + | chr6_4:58380223-58380242 | None:intergenic | 25.0% |
| ! | CTATAAGGAATACAATAACA+AGG | - | chr6_4:58380301-58380320 | Msa0991930:intron | 25.0% |
| !!! | TCAAATTTACCACGTTTTTT+AGG | - | chr6_4:58380428-58380447 | Msa0991930:intron | 25.0% |
| ! | TTATATTTGAAGACAAGTAG+TGG | + | chr6_4:58380481-58380500 | None:intergenic | 25.0% |
| ! | CAAAAAATATGACAACAACT+TGG | + | chr6_4:58380643-58380662 | None:intergenic | 25.0% |
| ! | TACAGTATCAATCAATTAAG+AGG | + | chr6_4:58380679-58380698 | None:intergenic | 25.0% |
| ! | AACAGAACAAATATAAACAG+CGG | - | chr6_4:58381028-58381047 | Msa0991930:intron | 25.0% |
| ! | GGAGATATTTCAATTTACAA+TGG | - | chr6_4:58381083-58381102 | Msa0991930:intron | 25.0% |
| ! | ATTTCAATTTACAATGGTTC+AGG | - | chr6_4:58381089-58381108 | Msa0991930:intron | 25.0% |
| ! | CCCGGTAATAATTTAAAAAA+TGG | - | chr6_4:58381322-58381341 | Msa0991930:intron | 25.0% |
| !!! | TTGTGCATGTTTTTGAATTT+TGG | - | chr6_4:58381478-58381497 | Msa0991930:intron | 25.0% |
| !! | AAATTTTACAGATTGGGATT+AGG | + | chr6_4:58381845-58381864 | None:intergenic | 25.0% |
| ! | AATGTAATGTATGCAATTGA+AGG | + | chr6_4:58382055-58382074 | None:intergenic | 25.0% |
| ! | AAATAGGTTGACCTTTCAAA+AGG | + | chr6_4:58378352-58378371 | None:intergenic | 30.0% |
| ! | TTTGAAAGGTCAACCTATTT+TGG | - | chr6_4:58378352-58378371 | Msa0991930:intron | 30.0% |
| CTTGAACATGTGTTTATAAG+TGG | - | chr6_4:58378478-58378497 | Msa0991930:intron | 30.0% | |
| TGAACATGTGTTTATAAGTG+GGG | - | chr6_4:58378480-58378499 | Msa0991930:intron | 30.0% | |
| GTTTGTAACTCTTCATGTTA+GGG | + | chr6_4:58378783-58378802 | None:intergenic | 30.0% | |
| AGTTTCTTTAACAGTTTAGC+TGG | + | chr6_4:58378884-58378903 | None:intergenic | 30.0% | |
| AGGAAAGTTGAAGGAATATT+GGG | + | chr6_4:58378959-58378978 | None:intergenic | 30.0% | |
| AATGACTAAGAGAACAAAGA+AGG | + | chr6_4:58379091-58379110 | None:intergenic | 30.0% | |
| !!! | GTCATTTTTACAGAAATCGA+AGG | - | chr6_4:58379105-58379124 | Msa0991930:CDS | 30.0% |
| CTAAAAAACGATGAGTAAGA+TGG | + | chr6_4:58379432-58379451 | None:intergenic | 30.0% | |
| AGAACTCACGAATACAAAAA+AGG | + | chr6_4:58379466-58379485 | None:intergenic | 30.0% | |
| !! | TAGAAAAATTTTGTGCTGCT+GGG | - | chr6_4:58379664-58379683 | Msa0991930:intron | 30.0% |
| ! | AATTCGATCTGGGTTTATTT+TGG | - | chr6_4:58379729-58379748 | Msa0991930:intron | 30.0% |
| TTGATTCAATTCAACACTTC+AGG | + | chr6_4:58379804-58379823 | None:intergenic | 30.0% | |
| GAGTACAAAGATGAAGATAA+TGG | - | chr6_4:58379911-58379930 | Msa0991930:intron | 30.0% | |
| !!! | ACTTTTTTTAGCTTGGTTCT+TGG | + | chr6_4:58380002-58380021 | None:intergenic | 30.0% |
| !!! | TGTCATCACTTTTTTTAGCT+TGG | + | chr6_4:58380009-58380028 | None:intergenic | 30.0% |
| AGCTAAAAAAAGTGATGACA+TGG | - | chr6_4:58380009-58380028 | Msa0991930:intron | 30.0% | |
| !! | TGTTTAAAAGAGAGTGTTAG+AGG | - | chr6_4:58380048-58380067 | Msa0991930:intron | 30.0% |
| !! | GTTTAAAAGAGAGTGTTAGA+GGG | - | chr6_4:58380049-58380068 | Msa0991930:intron | 30.0% |
| ! | AGTAATGGCATTTAAAATCG+TGG | + | chr6_4:58380364-58380383 | None:intergenic | 30.0% |
| ATTTGAACACCTAAAAAACG+TGG | + | chr6_4:58380440-58380459 | None:intergenic | 30.0% | |
| TGGTTATTGTGTTTCATGAA+TGG | - | chr6_4:58380535-58380554 | Msa0991930:intron | 30.0% | |
| ATCTGTTAATCATGTTCAGT+GGG | + | chr6_4:58380598-58380617 | None:intergenic | 30.0% | |
| AAATATGACAACAACTTGGA+TGG | + | chr6_4:58380639-58380658 | None:intergenic | 30.0% | |
| ATAACACTCGATAAGTAGAA+TGG | + | chr6_4:58380783-58380802 | None:intergenic | 30.0% | |
| TTCTACTTATCGAGTGTTAT+TGG | - | chr6_4:58380783-58380802 | Msa0991930:intron | 30.0% | |
| ! | TCTACTTATCGAGTGTTATT+GGG | - | chr6_4:58380784-58380803 | Msa0991930:intron | 30.0% |
| GTGGAAGAGGTAAAAAAAAA+TGG | - | chr6_4:58380841-58380860 | Msa0991930:intron | 30.0% | |
| ACAAATATAAACAGCGGATA+TGG | - | chr6_4:58381034-58381053 | Msa0991930:intron | 30.0% | |
| CAAATATAAACAGCGGATAT+GGG | - | chr6_4:58381035-58381054 | Msa0991930:intron | 30.0% | |
| TTCATAAACCACTTATTGGA+TGG | + | chr6_4:58381214-58381233 | None:intergenic | 30.0% | |
| AATAATATGTCACAATCCGT+TGG | - | chr6_4:58381232-58381251 | Msa0991930:intron | 30.0% | |
| ATAATATGTCACAATCCGTT+GGG | - | chr6_4:58381233-58381252 | Msa0991930:intron | 30.0% | |
| !!! | AGACGCACTTTTAATTTCAA+GGG | - | chr6_4:58381413-58381432 | Msa0991930:intron | 30.0% |
| AACGTGAAATTATGAACTCT+TGG | - | chr6_4:58381581-58381600 | Msa0991930:intron | 30.0% | |
| !! | TATCCATCTCTTGTTGTTAT+TGG | - | chr6_4:58381644-58381663 | Msa0991930:intron | 30.0% |
| !!! | ATCACTTTATGTTTTAGCCA+TGG | + | chr6_4:58381795-58381814 | None:intergenic | 30.0% |
| ! | TGTTTCGTTTTCTGCAAACA+AGG | + | chr6_4:58377965-58377984 | None:intergenic | 35.0% |
| TCTCGCAAGAAAAAACCATT+TGG | - | chr6_4:58378047-58378066 | Msa0991930:three_prime_UTR | 35.0% | |
| ACATCTAATCTTGGACCAAA+TGG | + | chr6_4:58378065-58378084 | None:intergenic | 35.0% | |
| TCAATTCCATAATCTTGACG+AGG | + | chr6_4:58378226-58378245 | None:intergenic | 35.0% | |
| ATTGAAGTCATGTACAGAGT+AGG | - | chr6_4:58378241-58378260 | Msa0991930:intron | 35.0% | |
| ! | CTGGATTTGATCCTTTTGAA+AGG | - | chr6_4:58378338-58378357 | Msa0991930:intron | 35.0% |
| ATCAAAGAATGGGCCAAAAT+AGG | + | chr6_4:58378368-58378387 | None:intergenic | 35.0% | |
| GAACATGTGTTTATAAGTGG+GGG | - | chr6_4:58378481-58378500 | Msa0991930:intron | 35.0% | |
| TGCAACCTTTCGCAAAAATT+TGG | - | chr6_4:58378526-58378545 | Msa0991930:intron | 35.0% | |
| AGGTGTTTGCAGATAATGTA+AGG | - | chr6_4:58378739-58378758 | Msa0991930:intron | 35.0% | |
| CGTTTGTAACTCTTCATGTT+AGG | + | chr6_4:58378784-58378803 | None:intergenic | 35.0% | |
| TGATAAAGTGAAAGTAGGTG+GGG | + | chr6_4:58378924-58378943 | None:intergenic | 35.0% | |
| GTGATAAAGTGAAAGTAGGT+GGG | + | chr6_4:58378925-58378944 | None:intergenic | 35.0% | |
| GATCGTGATAAAGTGAAAGT+AGG | + | chr6_4:58378929-58378948 | None:intergenic | 35.0% | |
| GAGGAAAGTTGAAGGAATAT+TGG | + | chr6_4:58378960-58378979 | None:intergenic | 35.0% | |
| ! | TAGTCAGCACAGCATATTTT+TGG | + | chr6_4:58378998-58379017 | None:intergenic | 35.0% |
| TCAGGTAAGGGAGTAAAAAA+AGG | + | chr6_4:58379296-58379315 | None:intergenic | 35.0% | |
| GATTAGATCAGAAACTCCAT+GGG | + | chr6_4:58379410-58379429 | None:intergenic | 35.0% | |
| ! | GTAGAAAAATTTTGTGCTGC+TGG | - | chr6_4:58379663-58379682 | Msa0991930:intron | 35.0% |
| !!! | TGTCGTTTTGGGTTTGTTTT+AGG | - | chr6_4:58379754-58379773 | Msa0991930:intron | 35.0% |
| TGGAGAAGAAACAAGATTGA+CGG | - | chr6_4:58379882-58379901 | Msa0991930:intron | 35.0% | |
| TCCTAAACGTGAAAACAAAC+AGG | - | chr6_4:58380278-58380297 | Msa0991930:intron | 35.0% | |
| GTGAAAACAAACAGGCTATA+AGG | - | chr6_4:58380286-58380305 | Msa0991930:intron | 35.0% | |
| GTATCGTGATTACTGAGTAA+TGG | + | chr6_4:58380379-58380398 | None:intergenic | 35.0% | |
| TGAAGACAAGTAGTGGTTAA+TGG | + | chr6_4:58380474-58380493 | None:intergenic | 35.0% | |
| CATCTGTTAATCATGTTCAG+TGG | + | chr6_4:58380599-58380618 | None:intergenic | 35.0% | |
| AACAACTTGGATGGTTAACA+CGG | + | chr6_4:58380630-58380649 | None:intergenic | 35.0% | |
| TTGATGTTCATCACACAACA+GGG | + | chr6_4:58381009-58381028 | None:intergenic | 35.0% | |
| TTTGATGTTCATCACACAAC+AGG | + | chr6_4:58381010-58381029 | None:intergenic | 35.0% | |
| CAATTAGACCATCCAATAAG+TGG | - | chr6_4:58381203-58381222 | Msa0991930:intron | 35.0% | |
| ! | CTTGAAATTAAAAGTGCGTC+TGG | + | chr6_4:58381414-58381433 | None:intergenic | 35.0% |
| !!! | CAGACGCACTTTTAATTTCA+AGG | - | chr6_4:58381412-58381431 | Msa0991930:intron | 35.0% |
| !!! | GCACTTTTAATTTCAAGGGT+CGG | - | chr6_4:58381417-58381436 | Msa0991930:intron | 35.0% |
| !! | AACATTTTGGTAAATTGCGC+AGG | + | chr6_4:58381953-58381972 | None:intergenic | 35.0% |
| GCAATTTACCAAAATGTTGC+AGG | - | chr6_4:58381955-58381974 | Msa0991930:CDS | 35.0% | |
| TAGTATATGCGTGAAACACA+TGG | + | chr6_4:58381986-58382005 | None:intergenic | 35.0% | |
| TCCTCTTCAAGTGAATTCGA+AGG | - | chr6_4:58377850-58377869 | Msa0991930:three_prime_UTR | 40.0% | |
| TCCTTCGAATTCACTTGAAG+AGG | + | chr6_4:58377854-58377873 | None:intergenic | 40.0% | |
| ACATTTGCAGAGACCTTGAA+GGG | + | chr6_4:58377996-58378015 | None:intergenic | 40.0% | |
| AACATTTGCAGAGACCTTGA+AGG | + | chr6_4:58377997-58378016 | None:intergenic | 40.0% | |
| TTTGGCCCATTCTTTGATCT+CGG | - | chr6_4:58378370-58378389 | Msa0991930:intron | 40.0% | |
| ! | AGTCATCTTTTGTCCAACGT+GGG | + | chr6_4:58378460-58378479 | None:intergenic | 40.0% |
| ! | AAGTCATCTTTTGTCCAACG+TGG | + | chr6_4:58378461-58378480 | None:intergenic | 40.0% |
| ! | GCTGTCCAAATTTTTGCGAA+AGG | + | chr6_4:58378534-58378553 | None:intergenic | 40.0% |
| TACATTATGTGTCTGCGAGT+TGG | - | chr6_4:58378592-58378611 | Msa0991930:intron | 40.0% | |
| GATAAAGTGAAAGTAGGTGG+GGG | + | chr6_4:58378923-58378942 | None:intergenic | 40.0% | |
| CGTGATAAAGTGAAAGTAGG+TGG | + | chr6_4:58378926-58378945 | None:intergenic | 40.0% | |
| TGAAGGAATATTGGGATGCA+AGG | + | chr6_4:58378951-58378970 | None:intergenic | 40.0% | |
| TTGGTAAGTATGCTGTGAAG+AGG | + | chr6_4:58378979-58378998 | None:intergenic | 40.0% | |
| GCAGAAGCAGATTAAGAAGA+TGG | + | chr6_4:58379025-58379044 | None:intergenic | 40.0% | |
| ACTAAGAGAACAAAGAAGGC+TGG | + | chr6_4:58379087-58379106 | None:intergenic | 40.0% | |
| TTACTCCCTTACCTGATAAC+CGG | - | chr6_4:58379300-58379319 | Msa0991930:intron | 40.0% | |
| GGATTAGATCAGAAACTCCA+TGG | + | chr6_4:58379411-58379430 | None:intergenic | 40.0% | |
| GTTCTGCGATCTGTTTCATT+CGG | - | chr6_4:58379481-58379500 | Msa0991930:intron | 40.0% | |
| GACCTGTAAAGTGACATTCT+TGG | - | chr6_4:58379776-58379795 | Msa0991930:intron | 40.0% | |
| !! | CACCAAGAATGTCACTTTAC+AGG | + | chr6_4:58379781-58379800 | None:intergenic | 40.0% |
| GGAGAAGAAACAAGATTGAC+GGG | - | chr6_4:58379883-58379902 | Msa0991930:intron | 40.0% | |
| AAGAAACAAGATTGACGGGA+GGG | - | chr6_4:58379887-58379906 | Msa0991930:intron | 40.0% | |
| ! | TTAGCTTGGTTCTTGGCTAT+CGG | + | chr6_4:58379995-58380014 | None:intergenic | 40.0% |
| ATGACATGGCTCATATGTGT+GGG | - | chr6_4:58380023-58380042 | Msa0991930:intron | 40.0% | |
| !! | GCCTGTTTGTTTTCACGTTT+AGG | + | chr6_4:58380282-58380301 | None:intergenic | 40.0% |
| GGTAAATTATGCTCAGAGGA+TGG | + | chr6_4:58380343-58380362 | None:intergenic | 40.0% | |
| TCGTGGTAAATTATGCTCAG+AGG | + | chr6_4:58380347-58380366 | None:intergenic | 40.0% | |
| TGAACCTTTCAAACTGCACA+TGG | + | chr6_4:58380747-58380766 | None:intergenic | 40.0% | |
| !! | CTGAAGTTCTAAACATGCGA+CGG | + | chr6_4:58380905-58380924 | None:intergenic | 40.0% |
| TGAAATATCTCCTCTTCCTC+TGG | + | chr6_4:58381075-58381094 | None:intergenic | 40.0% | |
| CTTCATAGGTATAGACCCAA+CGG | + | chr6_4:58381251-58381270 | None:intergenic | 40.0% | |
| GGTCTATACCTATGAAGCAT+TGG | - | chr6_4:58381254-58381273 | Msa0991930:intron | 40.0% | |
| TGTAAGTGCCAATGCTTCAT+AGG | + | chr6_4:58381265-58381284 | None:intergenic | 40.0% | |
| TGACATCGATAAATCAACCC+CGG | - | chr6_4:58381304-58381323 | Msa0991930:intron | 40.0% | |
| TTACCACATTGGATTGCTAG+AGG | - | chr6_4:58381520-58381539 | Msa0991930:intron | 40.0% | |
| AATCCTCTAGCAATCCAATG+TGG | + | chr6_4:58381526-58381545 | None:intergenic | 40.0% | |
| CTGCCAATAACAACAAGAGA+TGG | + | chr6_4:58381650-58381669 | None:intergenic | 40.0% | |
| !! | TCTCTTGTTGTTATTGGCAG+CGG | - | chr6_4:58381650-58381669 | Msa0991930:intron | 40.0% |
| !! | CACGACTTGGATACATTTTC+TGG | - | chr6_4:58381718-58381737 | Msa0991930:CDS | 40.0% |
| ! | GACTTGGATACATTTTCTGG+TGG | - | chr6_4:58381721-58381740 | Msa0991930:CDS | 40.0% |
| CTGTTTACATTGGATCAGCA+AGG | + | chr6_4:58381929-58381948 | None:intergenic | 40.0% | |
| GTTCTGTTCGAAGACGTACT+AGG | - | chr6_4:58377895-58377914 | Msa0991930:three_prime_UTR | 45.0% | |
| AGACGTACTAGGATGTCGTT+TGG | - | chr6_4:58377906-58377925 | Msa0991930:three_prime_UTR | 45.0% | |
| ! | GACGTACTAGGATGTCGTTT+GGG | - | chr6_4:58377907-58377926 | Msa0991930:three_prime_UTR | 45.0% |
| ! | CGTTTTCTGCAAACAAGGTG+TGG | + | chr6_4:58377960-58377979 | None:intergenic | 45.0% |
| AAACAGAACCTCTCCCTTCA+AGG | - | chr6_4:58377980-58377999 | Msa0991930:three_prime_UTR | 45.0% | |
| CAGTCAGAAGAGAGAAAGTC+GGG | + | chr6_4:58378020-58378039 | None:intergenic | 45.0% | |
| CCAGTCAGAAGAGAGAAAGT+CGG | + | chr6_4:58378021-58378040 | None:intergenic | 45.0% | |
| GTCGTGCTCACATCTAATCT+TGG | + | chr6_4:58378074-58378093 | None:intergenic | 45.0% | |
| TTCCATAATCTTGACGAGGC+TGG | + | chr6_4:58378222-58378241 | None:intergenic | 45.0% | |
| CCTGACCGAGATCAAAGAAT+GGG | + | chr6_4:58378378-58378397 | None:intergenic | 45.0% | |
| ACCTGACCGAGATCAAAGAA+TGG | + | chr6_4:58378379-58378398 | None:intergenic | 45.0% | |
| AGTGTTAAAGAGTCCCACGT+TGG | - | chr6_4:58378444-58378463 | Msa0991930:intron | 45.0% | |
| !! | TGTGTCTGCGAGTTGGATTT+TGG | - | chr6_4:58378599-58378618 | Msa0991930:intron | 45.0% |
| !! | TCTGCGAGTTGGATTTTGGA+GGG | - | chr6_4:58378603-58378622 | Msa0991930:intron | 45.0% |
| GCTGTGAAGAGGAAAGTTGA+AGG | + | chr6_4:58378968-58378987 | None:intergenic | 45.0% | |
| TCTGCAGACTAGCACCATAA+CGG | - | chr6_4:58379040-58379059 | Msa0991930:intron | 45.0% | |
| GGCAAATATGGTACCCGTTA+TGG | + | chr6_4:58379057-58379076 | None:intergenic | 45.0% | |
| GCTGGCATTGTTGGCAAATA+TGG | + | chr6_4:58379069-58379088 | None:intergenic | 45.0% | |
| ACAAAGAAGGCTGGCATTGT+TGG | + | chr6_4:58379078-58379097 | None:intergenic | 45.0% | |
| TGACGTGTCTTCATGTGTGT+GGG | + | chr6_4:58379270-58379289 | None:intergenic | 45.0% | |
| ATGACGTGTCTTCATGTGTG+TGG | + | chr6_4:58379271-58379290 | None:intergenic | 45.0% | |
| GAGCTCCTAAACAGAGATGA+TGG | + | chr6_4:58379524-58379543 | None:intergenic | 45.0% | |
| TCATCTCTGTTTAGGAGCTC+CGG | - | chr6_4:58379524-58379543 | Msa0991930:intron | 45.0% | |
| GCTTCACACAACCCAGAAAT+TGG | + | chr6_4:58379553-58379572 | None:intergenic | 45.0% | |
| GGACTGCAACATGTTCGATA+TGG | - | chr6_4:58379685-58379704 | Msa0991930:intron | 45.0% | |
| GAAGAAACAAGATTGACGGG+AGG | - | chr6_4:58379886-58379905 | Msa0991930:intron | 45.0% | |
| GATGACATGGCTCATATGTG+TGG | - | chr6_4:58380022-58380041 | Msa0991930:intron | 45.0% | |
| !! | TGTGTTTGCGAGTCGGTTTT+TGG | + | chr6_4:58380137-58380156 | None:intergenic | 45.0% |
| CTAATGGTGTGTTTGCGAGT+CGG | + | chr6_4:58380144-58380163 | None:intergenic | 45.0% | |
| ! | ACATTTTACACCACAGCCTG+AGG | - | chr6_4:58380189-58380208 | Msa0991930:intron | 45.0% |
| ! | TTAGGAGCACATCAAACGTG+CGG | + | chr6_4:58380264-58380283 | None:intergenic | 45.0% |
| CTCTCCATGTGCAGTTTGAA+AGG | - | chr6_4:58380740-58380759 | Msa0991930:intron | 45.0% | |
| ! | TCGAGTGTTATTGGGTCACA+AGG | - | chr6_4:58380792-58380811 | Msa0991930:intron | 45.0% |
| ! | GATCATGAGCAGTTTGTTCG+TGG | - | chr6_4:58380822-58380841 | Msa0991930:intron | 45.0% |
| GTCTGGTGTCTGATATGTGT+CGG | + | chr6_4:58381397-58381416 | None:intergenic | 45.0% | |
| GAGTTGTGCTCTTACCACAT+TGG | - | chr6_4:58381509-58381528 | Msa0991930:intron | 45.0% | |
| !! | CTCTTGTTGTTATTGGCAGC+GGG | - | chr6_4:58381651-58381670 | Msa0991930:intron | 45.0% |
| GTCAGTTTCATGATGCTCCA+TGG | - | chr6_4:58381775-58381794 | Msa0991930:intron | 45.0% | |
| TTGCGCAGGACTGTTTACAT+TGG | + | chr6_4:58381939-58381958 | None:intergenic | 45.0% | |
| !!! | TTCTTTTTATTTTTATTTTT+TGG | - | chr6_4:58379346-58379365 | Msa0991930:intron | 5.0% |
| !!! | TTTTATTTTTATTATTGTTT+GGG | + | chr6_4:58379942-58379961 | None:intergenic | 5.0% |
| !!! | ATTTTATTTTTATTATTGTT+TGG | + | chr6_4:58379943-58379962 | None:intergenic | 5.0% |
| CCGACTTTCTCTCTTCTGAC+TGG | - | chr6_4:58378018-58378037 | Msa0991930:three_prime_UTR | 50.0% | |
| GACCAGCCTCGTCAAGATTA+TGG | - | chr6_4:58378217-58378236 | Msa0991930:CDS | 50.0% | |
| CCCATTCTTTGATCTCGGTC+AGG | - | chr6_4:58378375-58378394 | Msa0991930:intron | 50.0% | |
| !! | GTCTGCGAGTTGGATTTTGG+AGG | - | chr6_4:58378602-58378621 | Msa0991930:intron | 50.0% |
| CTGCAGACTAGCACCATAAC+GGG | - | chr6_4:58379041-58379060 | Msa0991930:intron | 50.0% | |
| TGCGATGGAATGGAACAAGC+TGG | - | chr6_4:58379156-58379175 | Msa0991930:intron | 50.0% | |
| CCTAGCCGGTTATCAGGTAA+GGG | + | chr6_4:58379308-58379327 | None:intergenic | 50.0% | |
| AACTTGCCTAGCCGGTTATC+AGG | + | chr6_4:58379314-58379333 | None:intergenic | 50.0% | |
| TGTGTCTCAACTTGCCTAGC+CGG | + | chr6_4:58379322-58379341 | None:intergenic | 50.0% | |
| CTGCGATCTGTTTCATTCGG+CGG | - | chr6_4:58379484-58379503 | Msa0991930:intron | 50.0% | |
| AGCGGCCATCATCTCTGTTT+AGG | - | chr6_4:58379516-58379535 | Msa0991930:intron | 50.0% | |
| ACAACCCAGAAATTGGCCAC+CGG | + | chr6_4:58379546-58379565 | None:intergenic | 50.0% | |
| GGTTGTGTGAAGCAGAGCTA+TGG | - | chr6_4:58379560-58379579 | Msa0991930:intron | 50.0% | |
| TGTGTGAAGCAGAGCTATGG+CGG | - | chr6_4:58379563-58379582 | Msa0991930:intron | 50.0% | |
| !! | GTTTGCGAGTCGGTTTTTGG+AGG | + | chr6_4:58380134-58380153 | None:intergenic | 50.0% |
| ! | TATCACGGCGATTTTGCCTC+AGG | + | chr6_4:58380208-58380227 | None:intergenic | 50.0% |
| ! | GAGCAGTTTGTTCGTGGAAG+AGG | - | chr6_4:58380828-58380847 | Msa0991930:intron | 50.0% |
| AAACAGCGGATATGGGTTCG+AGG | - | chr6_4:58381042-58381061 | Msa0991930:intron | 50.0% | |
| TTCAAGGGTCGGAGTTACAC+AGG | - | chr6_4:58381428-58381447 | Msa0991930:intron | 50.0% | |
| ! | TGTTGTTATTGGCAGCGGGT+TGG | - | chr6_4:58381655-58381674 | Msa0991930:intron | 50.0% |
| AGAGTCTCTGCTTCACGACT+TGG | - | chr6_4:58381705-58381724 | Msa0991930:CDS | 50.0% | |
| ! | TGGCGACTCCTGCAACATTT+TGG | + | chr6_4:58381966-58381985 | None:intergenic | 50.0% |
| ACAAGGTGTGGCAGAGGACA+AGG | + | chr6_4:58377948-58377967 | None:intergenic | 55.0% | |
| CTGCAAACAAGGTGTGGCAG+AGG | + | chr6_4:58377954-58377973 | None:intergenic | 55.0% | |
| TGCAGAGACCTTGAAGGGAG+AGG | + | chr6_4:58377991-58378010 | None:intergenic | 55.0% | |
| GCGCTGTGAGCTTAGCACTA+CGG | - | chr6_4:58379127-58379146 | Msa0991930:CDS | 55.0% | |
| GTGAGCTTAGCACTACGGAG+TGG | - | chr6_4:58379132-58379151 | Msa0991930:CDS | 55.0% | |
| CCCTTACCTGATAACCGGCT+AGG | - | chr6_4:58379305-58379324 | Msa0991930:intron | 55.0% | |
| GCCTAGCCGGTTATCAGGTA+AGG | + | chr6_4:58379309-58379328 | None:intergenic | 55.0% | |
| TCCATGGGAGCTCGTAGAGA+TGG | + | chr6_4:58379395-58379414 | None:intergenic | 55.0% | |
| ! | ATTCGGCGGCGCTTTGTTAG+CGG | - | chr6_4:58379498-58379517 | Msa0991930:intron | 55.0% |
| TCTCTGTTTAGGAGCTCCGG+TGG | - | chr6_4:58379527-58379546 | Msa0991930:intron | 55.0% | |
| AGCTCCGGTGGCCAATTTCT+GGG | - | chr6_4:58379539-58379558 | Msa0991930:intron | 55.0% | |
| AGGAAGTCGACCAGAGGAAG+AGG | - | chr6_4:58381062-58381081 | Msa0991930:intron | 55.0% | |
| !! | TGTTATTGGCAGCGGGTTGG+CGG | - | chr6_4:58381658-58381677 | Msa0991930:intron | 55.0% |
| GCGGTTGCTGGGATGGTTAT+TGG | - | chr6_4:58381677-58381696 | Msa0991930:CDS | 55.0% | |
| ACGGAGTGGCTGCGATGGAA+TGG | - | chr6_4:58379146-58379165 | Msa0991930:CDS | 60.0% | |
| GCCATCTCTACGAGCTCCCA+TGG | - | chr6_4:58379391-58379410 | Msa0991930:intron | 60.0% | |
| GAGCTCCGGTGGCCAATTTC+TGG | - | chr6_4:58379538-58379557 | Msa0991930:intron | 60.0% | |
| GTGAAGCAGAGCTATGGCGG+TGG | - | chr6_4:58379566-58379585 | Msa0991930:intron | 60.0% | |
| CAGAGCTATGGCGGTGGCTA+TGG | - | chr6_4:58379572-58379591 | Msa0991930:intron | 60.0% | |
| ! | GGCGATTTTGCCTCAGGCTG+TGG | + | chr6_4:58380202-58380221 | None:intergenic | 60.0% |
| GGTTCGAGGAAGTCGACCAG+AGG | - | chr6_4:58381056-58381075 | Msa0991930:intron | 60.0% | |
| GCACTACGGAGTGGCTGCGA+TGG | - | chr6_4:58379141-58379160 | Msa0991930:CDS | 65.0% | |
| !! | GCAGCGGGTTGGCGGTTGCT+GGG | - | chr6_4:58381666-58381685 | Msa0991930:intron | 70.0% |
| !! | CGGGTTGGCGGTTGCTGGGA+TGG | - | chr6_4:58381670-58381689 | Msa0991930:CDS | 70.0% |
| !! | GGCAGCGGGTTGGCGGTTGC+TGG | - | chr6_4:58381665-58381684 | Msa0991930:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 58377828 | 58382097 | 58377828 | ID=Msa0991930;Name=Msa0991930 |
| chr6_4 | mRNA | 58377828 | 58382097 | 58377828 | ID=Msa0991930-mRNA-1;Parent=Msa0991930;Name=Msa0991930-mRNA-1;_AED=0.05;_eAED=0.05;_QI=90|1|1|1|0.6|0.66|6|341|193 |
| chr6_4 | exon | 58377828 | 58378255 | 58377828 | ID=Msa0991930-mRNA-1:exon:11582;Parent=Msa0991930-mRNA-1 |
| chr6_4 | exon | 58378815 | 58378892 | 58378815 | ID=Msa0991930-mRNA-1:exon:11581;Parent=Msa0991930-mRNA-1 |
| chr6_4 | exon | 58379076 | 58379171 | 58379076 | ID=Msa0991930-mRNA-1:exon:11580;Parent=Msa0991930-mRNA-1 |
| chr6_4 | exon | 58381529 | 58381591 | 58381529 | ID=Msa0991930-mRNA-1:exon:11579;Parent=Msa0991930-mRNA-1 |
| chr6_4 | exon | 58381667 | 58381759 | 58381667 | ID=Msa0991930-mRNA-1:exon:11578;Parent=Msa0991930-mRNA-1 |
| chr6_4 | exon | 58381843 | 58382097 | 58381843 | ID=Msa0991930-mRNA-1:exon:11577;Parent=Msa0991930-mRNA-1 |
| chr6_4 | five_prime_UTR | 58382008 | 58382097 | 58382008 | ID=Msa0991930-mRNA-1:five_prime_utr;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58381843 | 58382007 | 58381843 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58381667 | 58381759 | 58381667 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58381529 | 58381591 | 58381529 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58379076 | 58379171 | 58379076 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58378815 | 58378892 | 58378815 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | CDS | 58378169 | 58378255 | 58378169 | ID=Msa0991930-mRNA-1:cds;Parent=Msa0991930-mRNA-1 |
| chr6_4 | three_prime_UTR | 58377828 | 58378168 | 58377828 | ID=Msa0991930-mRNA-1:three_prime_utr;Parent=Msa0991930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
