AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160360 MtrunA17_Chr7g0256481 98.802 167 2 0 1 167 1 167 6.94e-122 340
Msa1160360 MtrunA17_Chr5g0442081 63.095 168 61 1 1 167 4 171 1.68e-75 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160360 AT3G57090.2 64.706 170 57 1 1 167 1 170 9.77e-80 234
Msa1160360 AT3G57090.1 64.706 170 57 1 1 167 1 170 9.77e-80 234
Msa1160360 AT5G12390.1 55.357 168 67 2 1 163 1 165 1.61e-63 193

Find 55 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATACATGCTTGGATAAT+TGG 0.162647 7_4:-50262262 Msa1160360:three_prime_UTR
TCCTAGGAGTCGGCAGCTTC+TGG 0.252357 7_4:-50263627 Msa1160360:CDS
AAAATTGTAGTTATCAAATA+AGG 0.270444 7_4:+50262185 None:intergenic
ATGTATAGATTCAATTCTTT+CGG 0.289178 7_4:+50262276 None:intergenic
TGTATAGATTCAATTCTTTC+GGG 0.299564 7_4:+50262277 None:intergenic
ATTATGATTCGCAGCTTCTT+TGG 0.302296 7_4:-50263726 Msa1160360:intron
GTAACTTTCCGTTGAGTTGC+AGG 0.337755 7_4:-50265167 Msa1160360:five_prime_UTR
TTCTTGCTGTTGGGTACTAC+AGG 0.348000 7_4:-50263661 Msa1160360:CDS
GGCATCACTGCAACAGCTGC+AGG 0.350680 7_4:-50262332 Msa1160360:CDS
AGCTTTATCTTCTTGCTGTT+GGG 0.356980 7_4:-50263670 Msa1160360:CDS
GCAGCTTCTGGAGCAATGTT+TGG 0.361994 7_4:-50263615 Msa1160360:CDS
TTATGATTCGCAGCTTCTTT+GGG 0.372741 7_4:-50263725 Msa1160360:intron
CCTTGCAGATTGCACCTGAT+TGG 0.393005 7_4:-50262487 Msa1160360:intron
CATGGGCACTTGTTCATTCA+AGG 0.399932 7_4:-50264605 Msa1160360:CDS
GCAGATGGTGTAATAGGAAT+TGG 0.406309 7_4:-50262353 Msa1160360:intron
AAGCTTTATCTTCTTGCTGT+TGG 0.416064 7_4:-50263671 Msa1160360:CDS
AGCTTCTCTCTTTGATGTAA+AGG 0.431754 7_4:+50263689 None:intergenic
GCTCATGCAGATGGTGTAAT+AGG 0.436512 7_4:-50262359 Msa1160360:intron
GACAATGCCTGCCTCCAATC+AGG 0.442415 7_4:+50262473 None:intergenic
GCTTCTGGAGCAATGTTTGG+AGG 0.445797 7_4:-50263612 Msa1160360:intron
TCCCTCGGAAACTTCTTTAC+CGG 0.457316 7_4:-50265094 Msa1160360:CDS
GAAGTTGCAGAGGCTTCTAA+TGG 0.471526 7_4:-50264669 Msa1160360:CDS
AAAAGTATAGAAATTAGAAA+TGG 0.474025 7_4:-50265252 None:intergenic
GGAAGCTTCTTTGAATCCCT+CGG 0.481996 7_4:-50265109 Msa1160360:CDS
TGCAGATTGCACCTGATTGG+AGG 0.488276 7_4:-50262484 Msa1160360:intron
TGGTGTCATTGCTGCAGCAT+TGG 0.513273 7_4:-50262300 Msa1160360:CDS
TCCAGAAGCTGCCGACTCCT+AGG 0.515588 7_4:+50263626 None:intergenic
TGAGAGTTAACCGTCGTCGA+TGG 0.516268 7_4:-50265143 Msa1160360:exon
AGTAATTATACTTTCGAGCA+TGG 0.516555 7_4:+50264554 None:intergenic
CCGGCGGCGATCAGATCCCT+TGG 0.523323 7_4:-50265075 Msa1160360:CDS
AGAGCATAATGAGGTTGTCA+TGG 0.535428 7_4:-50264623 Msa1160360:CDS
ACAGGGCTACTGATTATCCT+AGG 0.548719 7_4:-50263643 Msa1160360:CDS
GAATTGAATCTATACATGCT+TGG 0.552208 7_4:-50262270 Msa1160360:exon
GTCGAAGAACGAATTGCAAA+GGG 0.553821 7_4:-50262437 Msa1160360:intron
GATTGCACCTGATTGGAGGC+AGG 0.564228 7_4:-50262480 Msa1160360:CDS
TAACTTTCCGTTGAGTTGCA+GGG 0.573150 7_4:-50265166 Msa1160360:five_prime_UTR
CCAAGGGATCTGATCGCCGC+CGG 0.574729 7_4:+50265075 None:intergenic
TCTTGCTGTTGGGTACTACA+GGG 0.577328 7_4:-50263660 Msa1160360:CDS
GAGTTAACCGTCGTCGATGG+AGG 0.584041 7_4:-50265140 Msa1160360:exon
GAGCATAATGAGGTTGTCAT+GGG 0.590973 7_4:-50264622 Msa1160360:CDS
AGTCGAAGAACGAATTGCAA+AGG 0.598958 7_4:-50262438 Msa1160360:CDS
CTGTGAAAGAGAAGTTGCAG+AGG 0.603501 7_4:-50264679 Msa1160360:CDS
GCATCACTGCAACAGCTGCA+GGG 0.604640 7_4:-50262331 Msa1160360:CDS
TGACATCACGGTCGCACCAA+GGG 0.605500 7_4:+50265059 None:intergenic
CTACTGATTATCCTAGGAGT+CGG 0.615715 7_4:-50263637 Msa1160360:CDS
CGCCGGTAAAGAAGTTTCCG+AGG 0.620017 7_4:+50265092 None:intergenic
GCCGGTAAAGAAGTTTCCGA+GGG 0.620980 7_4:+50265093 None:intergenic
ACTCTCACCCTGCAACTCAA+CGG 0.626960 7_4:+50265159 None:intergenic
CTCGGAAACTTCTTTACCGG+CGG 0.628306 7_4:-50265091 Msa1160360:CDS
ATGACATCACGGTCGCACCA+AGG 0.644581 7_4:+50265058 None:intergenic
GTAAGAATGAGAGCATAATG+AGG 0.656100 7_4:-50264632 Msa1160360:CDS
TTTCGAGCATGGCAATCCCA+CGG 0.664812 7_4:+50264565 None:intergenic
AACAAGAAGATATTCACCGT+GGG 0.666532 7_4:-50264581 Msa1160360:CDS
AAGTTACAGAGATGACATCA+CGG 0.723970 7_4:+50265047 None:intergenic
CAACAAGAAGATATTCACCG+TGG 0.736975 7_4:-50264582 Msa1160360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATATAAGAAAAAATATT+CGG + chr7_4:50262730-50262749 None:intergenic 10.0%
!!! TTTTTTTTTTTTGTGTGTTT+TGG + chr7_4:50262039-50262058 None:intergenic 15.0%
!! AAAATTGTAGTTATCAAATA+AGG + chr7_4:50265074-50265093 None:intergenic 15.0%
!!! AACAGATAATTTTAGTTTAA+TGG + chr7_4:50265229-50265248 None:intergenic 15.0%
!! TACAAAAAAACAAGAAATAC+AGG - chr7_4:50262067-50262086 Msa1160360:three_prime_UTR 20.0%
!! TCAAAAAAGCTATTAATTTC+CGG + chr7_4:50262314-50262333 None:intergenic 20.0%
!!! ATTTTGATTTGTTTGAGTTT+AGG - chr7_4:50262434-50262453 Msa1160360:intron 20.0%
!!! TTTTGATTTGTTTGAGTTTA+GGG - chr7_4:50262435-50262454 Msa1160360:intron 20.0%
!! TTCTGATTATTATTCTGTAT+AGG - chr7_4:50262746-50262765 Msa1160360:intron 20.0%
!! AATCATATTCATATGTTCAT+TGG - chr7_4:50262824-50262843 Msa1160360:intron 20.0%
!! ATGCAATACAACTAAAATAA+TGG - chr7_4:50263092-50263111 Msa1160360:intron 20.0%
!! ATAATAATTATGGATGTACA+AGG + chr7_4:50263515-50263534 None:intergenic 20.0%
!!! TTTGTTTTGATTTTCTCTTT+GGG - chr7_4:50263786-50263805 Msa1160360:intron 20.0%
!! AAACAGTAATAAGAAAAAAC+CGG + chr7_4:50264500-50264519 None:intergenic 20.0%
!! TGGATCAAAATAAAATCAAT+GGG + chr7_4:50264557-50264576 None:intergenic 20.0%
!!! TCTTTTATCTCTAAATTTTG+AGG - chr7_4:50264738-50264757 Msa1160360:intron 20.0%
!! ATAGCATTAACATTAACTAA+TGG - chr7_4:50264867-50264886 Msa1160360:intron 20.0%
!! ATGTATAGATTCAATTCTTT+CGG + chr7_4:50264983-50265002 None:intergenic 20.0%
!!! TTTGCTTATTTTACTTTCAT+CGG - chr7_4:50265019-50265038 Msa1160360:intron 20.0%
!!! ACATTTGTTTTTTTACAAAC+GGG + chr7_4:50265162-50265181 None:intergenic 20.0%
!!! CACATTTGTTTTTTTACAAA+CGG + chr7_4:50265163-50265182 None:intergenic 20.0%
! AGAAATAACATGAATTGAGA+GGG + chr7_4:50262252-50262271 None:intergenic 25.0%
! AAGAAATAACATGAATTGAG+AGG + chr7_4:50262253-50262272 None:intergenic 25.0%
! CTCAAACAAATCAAAATTGA+GGG + chr7_4:50262431-50262450 None:intergenic 25.0%
! ACTCAAACAAATCAAAATTG+AGG + chr7_4:50262432-50262451 None:intergenic 25.0%
!! ATTTTCAATCTGGTTATGAA+AGG + chr7_4:50262463-50262482 None:intergenic 25.0%
!! ACCAGATTGAAAATTTTATC+TGG - chr7_4:50262469-50262488 Msa1160360:CDS 25.0%
!! CCAGATTGAAAATTTTATCT+GGG - chr7_4:50262470-50262489 Msa1160360:CDS 25.0%
! ATTATTCTGTATAGGTTCAT+TGG - chr7_4:50262754-50262773 Msa1160360:intron 25.0%
! CAAATTAATGTAACTTCTCT+TGG - chr7_4:50262979-50262998 Msa1160360:intron 25.0%
! AAAAAAACACATAGCAAGAA+AGG + chr7_4:50263431-50263450 None:intergenic 25.0%
! ACATCAATCATATCTCTTTA+GGG + chr7_4:50263460-50263479 None:intergenic 25.0%
! AACATCAATCATATCTCTTT+AGG + chr7_4:50263461-50263480 None:intergenic 25.0%
!! TATATTTTTCTTGCCTTTTC+TGG - chr7_4:50263706-50263725 Msa1160360:CDS 25.0%
! TAACAATATGAACATACACT+GGG + chr7_4:50263757-50263776 None:intergenic 25.0%
!!! CTTTGTTTTGATTTTCTCTT+TGG - chr7_4:50263785-50263804 Msa1160360:intron 25.0%
! GAACTAATTGTTGAAAAAAC+AGG + chr7_4:50263875-50263894 None:intergenic 25.0%
! ATAACAAATTCCTTCAGAAA+TGG - chr7_4:50264193-50264212 Msa1160360:intron 25.0%
!!! AATGGTTTTATATCGTTGAT+TGG - chr7_4:50264211-50264230 Msa1160360:intron 25.0%
! ATTGTGTTCTATAGGAAATA+TGG + chr7_4:50264375-50264394 None:intergenic 25.0%
! TATAGAACACAATGATTCTT+CGG - chr7_4:50264382-50264401 Msa1160360:intron 25.0%
! GTGGATCAAAATAAAATCAA+TGG + chr7_4:50264558-50264577 None:intergenic 25.0%
! TATTCACAAATATCAGCATA+AGG + chr7_4:50264590-50264609 None:intergenic 25.0%
! TGTATAGATTCAATTCTTTC+GGG + chr7_4:50264982-50265001 None:intergenic 25.0%
!! TATTTTCACTTATGTATGTG+CGG + chr7_4:50265129-50265148 None:intergenic 25.0%
! CCCAGATAAAATTTTCAATC+TGG + chr7_4:50262473-50262492 None:intergenic 30.0%
!! ATTTTATCTGGGATTATTGC+TGG - chr7_4:50262481-50262500 Msa1160360:CDS 30.0%
TGAATTGCAAATACACTGTT+TGG - chr7_4:50262517-50262536 Msa1160360:intron 30.0%
!!! TGTTCATTGCATTGTTTTGA+AGG - chr7_4:50262553-50262572 Msa1160360:intron 30.0%
!!! GTTCATTGCATTGTTTTGAA+GGG - chr7_4:50262554-50262573 Msa1160360:intron 30.0%
AGTAATTATACTTTCGAGCA+TGG + chr7_4:50262705-50262724 None:intergenic 30.0%
TCAAAGCTATATTGCATACT+CGG - chr7_4:50262886-50262905 Msa1160360:intron 30.0%
! TACATTAATTTGAGCACAAC+AGG + chr7_4:50262971-50262990 None:intergenic 30.0%
TATCGCACAAACTTTAATGT+AGG - chr7_4:50263169-50263188 Msa1160360:intron 30.0%
ACAAACTTTAATGTAGGAGT+AGG - chr7_4:50263175-50263194 Msa1160360:intron 30.0%
TTTACTAAATTAGCGTGTGA+AGG - chr7_4:50263206-50263225 Msa1160360:intron 30.0%
TTACTAAATTAGCGTGTGAA+GGG - chr7_4:50263207-50263226 Msa1160360:intron 30.0%
TATTATGCCCTTTATATGCA+TGG - chr7_4:50263485-50263504 Msa1160360:intron 30.0%
GCTGCGAATCATAATAATTA+TGG + chr7_4:50263525-50263544 None:intergenic 30.0%
GTAACAATATGAACATACAC+TGG + chr7_4:50263758-50263777 None:intergenic 30.0%
GGAAAGAGATCTCAAATTAT+AGG + chr7_4:50263998-50264017 None:intergenic 30.0%
TGATAGCATCTTGAATAACA+AGG + chr7_4:50264019-50264038 None:intergenic 30.0%
TATTCAAGATGCTATCAGTT+AGG - chr7_4:50264022-50264041 Msa1160360:intron 30.0%
ACTGCTAATAACAAAGGAAA+GGG + chr7_4:50264050-50264069 None:intergenic 30.0%
TTTGTGACTGCTAATAACAA+AGG + chr7_4:50264056-50264075 None:intergenic 30.0%
! TTGTTATTAGCAGTCACAAA+AGG - chr7_4:50264056-50264075 Msa1160360:intron 30.0%
!! AAGGAATTTGTTATCCACAA+AGG + chr7_4:50264187-50264206 None:intergenic 30.0%
CGATATAAAACCATTTCTGA+AGG + chr7_4:50264206-50264225 None:intergenic 30.0%
!! GTTTTATATCGTTGATTGGT+CGG - chr7_4:50264215-50264234 Msa1160360:intron 30.0%
!! TTTTAGAAGTAGATCTGTCA+AGG - chr7_4:50264335-50264354 Msa1160360:intron 30.0%
TATAGGAAATATGGAGAATC+AGG + chr7_4:50264366-50264385 None:intergenic 30.0%
GAAGAATCATTGTGTTCTAT+AGG + chr7_4:50264383-50264402 None:intergenic 30.0%
TATTACTGTTTGTATGTGAG+TGG - chr7_4:50264509-50264528 Msa1160360:intron 30.0%
ATTACTGTTTGTATGTGAGT+GGG - chr7_4:50264510-50264529 Msa1160360:intron 30.0%
! TTCTTCGACTGTTTTCTTAA+GGG + chr7_4:50264808-50264827 None:intergenic 30.0%
GAATTGAATCTATACATGCT+TGG - chr7_4:50264986-50265005 Msa1160360:intron 30.0%
TCTATACATGCTTGGATAAT+TGG - chr7_4:50264994-50265013 Msa1160360:intron 30.0%
!! GTAAACATTTTGATGTCAAC+AGG - chr7_4:50265041-50265060 Msa1160360:intron 30.0%
AAGTTACAGAGATGACATCA+CGG + chr7_4:50262212-50262231 None:intergenic 35.0%
ACTCAGAATTTCAATTGTGC+CGG - chr7_4:50262292-50262311 Msa1160360:CDS 35.0%
! AAAATTGAGGGCGCAAAATA+TGG + chr7_4:50262419-50262438 None:intergenic 35.0%
! GTAAGAATGAGAGCATAATG+AGG - chr7_4:50262624-50262643 Msa1160360:intron 35.0%
AACAAGAAGATATTCACCGT+GGG - chr7_4:50262675-50262694 Msa1160360:intron 35.0%
ATCACAAGACGTAGAATAGA+CGG + chr7_4:50262855-50262874 None:intergenic 35.0%
TTCTACGTCTTGTGATTTCT+TGG - chr7_4:50262859-50262878 Msa1160360:intron 35.0%
ACAACTAGCAATGAAGACAT+TGG + chr7_4:50263017-50263036 None:intergenic 35.0%
TTCGAATTATTCATTCAGGC+TGG + chr7_4:50263052-50263071 None:intergenic 35.0%
GCAGTTCGAATTATTCATTC+AGG + chr7_4:50263056-50263075 None:intergenic 35.0%
ACTTTAATGTAGGAGTAGGA+CGG - chr7_4:50263179-50263198 Msa1160360:intron 35.0%
TCAAGCTGGTCCAATTATAA+TGG + chr7_4:50263235-50263254 None:intergenic 35.0%
AGCTTGAGAGGAAAATCTAA+CGG - chr7_4:50263248-50263267 Msa1160360:intron 35.0%
AAACACATAGCAAGAAAGGA+GGG + chr7_4:50263427-50263446 None:intergenic 35.0%
AAAACACATAGCAAGAAAGG+AGG + chr7_4:50263428-50263447 None:intergenic 35.0%
ATTATGATTCGCAGCTTCTT+TGG - chr7_4:50263530-50263549 Msa1160360:intron 35.0%
TTATGATTCGCAGCTTCTTT+GGG - chr7_4:50263531-50263550 Msa1160360:intron 35.0%
AGCTTCTCTCTTTGATGTAA+AGG + chr7_4:50263570-50263589 None:intergenic 35.0%
! AAGCTTTATCTTCTTGCTGT+TGG - chr7_4:50263585-50263604 Msa1160360:intron 35.0%
!! AGCTTTATCTTCTTGCTGTT+GGG - chr7_4:50263586-50263605 Msa1160360:intron 35.0%
TGGATATTGGATACTTCACA+AGG + chr7_4:50263820-50263839 None:intergenic 35.0%
GATACATTGTCTATGTGATG+TGG - chr7_4:50263913-50263932 Msa1160360:intron 35.0%
! TGTGATGTGGATACTTTTGT+TGG - chr7_4:50263926-50263945 Msa1160360:intron 35.0%
! GTGATGTGGATACTTTTGTT+GGG - chr7_4:50263927-50263946 Msa1160360:intron 35.0%
GACTGCTAATAACAAAGGAA+AGG + chr7_4:50264051-50264070 None:intergenic 35.0%
TTTAATAAACCCAGCTGGAT+TGG - chr7_4:50264082-50264101 Msa1160360:intron 35.0%
CTTCTTAGTGAGAGGTTTAT+TGG - chr7_4:50264156-50264175 Msa1160360:intron 35.0%
GTTTATTGGACAATCCTTTG+TGG - chr7_4:50264170-50264189 Msa1160360:intron 35.0%
TCCATGCCTGTTATTACATA+TGG - chr7_4:50264407-50264426 Msa1160360:intron 35.0%
CCATGCCTGTTATTACATAT+GGG - chr7_4:50264408-50264427 Msa1160360:intron 35.0%
GCTTTCCCATATGTAATAAC+AGG + chr7_4:50264416-50264435 None:intergenic 35.0%
! AAAAAACCGGCTCTCTAATA+TGG + chr7_4:50264487-50264506 None:intergenic 35.0%
AGTCCTTTGTCTAACATGAA+CGG - chr7_4:50264700-50264719 Msa1160360:intron 35.0%
! GTTCTTCGACTGTTTTCTTA+AGG + chr7_4:50264809-50264828 None:intergenic 35.0%
! TAACTTTCCGTTGAGTTGCA+GGG - chr7_4:50262090-50262109 Msa1160360:three_prime_UTR 40.0%
! ATCTGGGATTATTGCTGGAA+TGG - chr7_4:50262486-50262505 Msa1160360:intron 40.0%
AGAGCATAATGAGGTTGTCA+TGG - chr7_4:50262633-50262652 Msa1160360:intron 40.0%
GAGCATAATGAGGTTGTCAT+GGG - chr7_4:50262634-50262653 Msa1160360:intron 40.0%
CAACAAGAAGATATTCACCG+TGG - chr7_4:50262674-50262693 Msa1160360:intron 40.0%
TCACAAGACGTAGAATAGAC+GGG + chr7_4:50262854-50262873 None:intergenic 40.0%
TAGCAGCTATATGTGACAGA+AGG + chr7_4:50262933-50262952 None:intergenic 40.0%
!! GTGAAGGGCACCATTATAAT+TGG - chr7_4:50263222-50263241 Msa1160360:intron 40.0%
TATAATTGGACCAGCTTGAG+AGG - chr7_4:50263236-50263255 Msa1160360:intron 40.0%
! GTTAGATTTTCCTCTCAAGC+TGG + chr7_4:50263249-50263268 None:intergenic 40.0%
!! GTTGGAGGAAGTTTTGATCA+TGG + chr7_4:50263284-50263303 None:intergenic 40.0%
AGGTCAGCCATGCATATAAA+GGG + chr7_4:50263495-50263514 None:intergenic 40.0%
AAGGTCAGCCATGCATATAA+AGG + chr7_4:50263496-50263515 None:intergenic 40.0%
! CTACTGATTATCCTAGGAGT+CGG - chr7_4:50263619-50263638 Msa1160360:CDS 40.0%
TGATGATCTGACACCAGAAA+AGG + chr7_4:50263722-50263741 None:intergenic 40.0%
AGAGTCAACACAGTGGATAT+TGG + chr7_4:50263833-50263852 None:intergenic 40.0%
! GGACTTTTAATAAACCCAGC+TGG - chr7_4:50264077-50264096 Msa1160360:intron 40.0%
TGGCTTAGTAGAAACATGCT+AGG - chr7_4:50264102-50264121 Msa1160360:intron 40.0%
CAGACATACTTCTTAGTGAG+AGG - chr7_4:50264148-50264167 Msa1160360:intron 40.0%
! ATATCGTTGATTGGTCGGTA+TGG - chr7_4:50264220-50264239 Msa1160360:intron 40.0%
ACGTGATTGTTTACGAAAGC+AGG - chr7_4:50264244-50264263 Msa1160360:intron 40.0%
TGATTGTTTACGAAAGCAGG+AGG - chr7_4:50264247-50264266 Msa1160360:intron 40.0%
CCCATATGTAATAACAGGCA+TGG + chr7_4:50264411-50264430 None:intergenic 40.0%
ATGGGAAAGCTGATAACACT+AGG - chr7_4:50264426-50264445 Msa1160360:intron 40.0%
TGTTCACCATATTAGAGAGC+CGG - chr7_4:50264478-50264497 Msa1160360:intron 40.0%
CAGCATAAGGTCATTAGTAG+TGG + chr7_4:50264577-50264596 None:intergenic 40.0%
GAACCGTTCATGTTAGACAA+AGG + chr7_4:50264706-50264725 None:intergenic 40.0%
AGTCGAAGAACGAATTGCAA+AGG - chr7_4:50264818-50264837 Msa1160360:intron 40.0%
GTCGAAGAACGAATTGCAAA+GGG - chr7_4:50264819-50264838 Msa1160360:intron 40.0%
GCAGATGGTGTAATAGGAAT+TGG - chr7_4:50264903-50264922 Msa1160360:intron 40.0%
! GTAACTTTCCGTTGAGTTGC+AGG - chr7_4:50262089-50262108 Msa1160360:three_prime_UTR 45.0%
!! ATTTTAGCCTCCATCGACGA+CGG + chr7_4:50262126-50262145 None:intergenic 45.0%
TCGTCGATGGAGGCTAAAAT+CGG - chr7_4:50262126-50262145 Msa1160360:three_prime_UTR 45.0%
GGAAGCTTCTTTGAATCCCT+CGG - chr7_4:50262147-50262166 Msa1160360:three_prime_UTR 45.0%
TCCCTCGGAAACTTCTTTAC+CGG - chr7_4:50262162-50262181 Msa1160360:three_prime_UTR 45.0%
TGGGATTATTGCTGGAATGG+TGG - chr7_4:50262489-50262508 Msa1160360:intron 45.0%
CTGTGAAAGAGAAGTTGCAG+AGG - chr7_4:50262577-50262596 Msa1160360:intron 45.0%
GAAGTTGCAGAGGCTTCTAA+TGG - chr7_4:50262587-50262606 Msa1160360:intron 45.0%
CATGGGCACTTGTTCATTCA+AGG - chr7_4:50262651-50262670 Msa1160360:intron 45.0%
TTAATGTAGGAGTAGGACGG+TGG - chr7_4:50263182-50263201 Msa1160360:intron 45.0%
AGAAGTCTGCTTTGCATCGT+TGG + chr7_4:50263302-50263321 None:intergenic 45.0%
! AGATCAGCCTGAGATGCTTT+TGG - chr7_4:50263360-50263379 Msa1160360:intron 45.0%
!! ATTCACGCCAAAAGCATCTC+AGG + chr7_4:50263370-50263389 None:intergenic 45.0%
TTAGACAACTTCCTCGCCTT+AGG - chr7_4:50263390-50263409 Msa1160360:intron 45.0%
TAGACAACTTCCTCGCCTTA+GGG - chr7_4:50263391-50263410 Msa1160360:intron 45.0%
!! TTCTTGCTGTTGGGTACTAC+AGG - chr7_4:50263595-50263614 Msa1160360:intron 45.0%
!! TCTTGCTGTTGGGTACTACA+GGG - chr7_4:50263596-50263615 Msa1160360:intron 45.0%
! ACAGGGCTACTGATTATCCT+AGG - chr7_4:50263613-50263632 Msa1160360:CDS 45.0%
! TGGATACTTTTGTTGGGCGT+TGG - chr7_4:50263933-50263952 Msa1160360:intron 45.0%
! GGATACTTTTGTTGGGCGTT+GGG - chr7_4:50263934-50263953 Msa1160360:intron 45.0%
TCTACTAAGCCAATCCAGCT+GGG + chr7_4:50264094-50264113 None:intergenic 45.0%
TTCTACTAAGCCAATCCAGC+TGG + chr7_4:50264095-50264114 None:intergenic 45.0%
GCTCATGCAGATGGTGTAAT+AGG - chr7_4:50264897-50264916 Msa1160360:intron 45.0%
!!! TTAATATTTTTTTATTTGTT+AGG - chr7_4:50265093-50265112 Msa1160360:CDS 5.0%
ACTCTCACCCTGCAACTCAA+CGG + chr7_4:50262100-50262119 None:intergenic 50.0%
TGAGAGTTAACCGTCGTCGA+TGG - chr7_4:50262113-50262132 Msa1160360:three_prime_UTR 50.0%
GCCGGTAAAGAAGTTTCCGA+GGG + chr7_4:50262166-50262185 None:intergenic 50.0%
CTCGGAAACTTCTTTACCGG+CGG - chr7_4:50262165-50262184 Msa1160360:three_prime_UTR 50.0%
TTTCGAGCATGGCAATCCCA+CGG + chr7_4:50262694-50262713 None:intergenic 50.0%
AGTCTGCTTTGCATCGTTGG+AGG + chr7_4:50263299-50263318 None:intergenic 50.0%
!! GCAGCTTCTGGAGCAATGTT+TGG - chr7_4:50263641-50263660 Msa1160360:CDS 50.0%
!! GCTTCTGGAGCAATGTTTGG+AGG - chr7_4:50263644-50263663 Msa1160360:CDS 50.0%
! CCAGTCTAGAGTCAACACAG+TGG + chr7_4:50263840-50263859 None:intergenic 50.0%
!! CCACTGTGTTGACTCTAGAC+TGG - chr7_4:50263837-50263856 Msa1160360:intron 50.0%
AACATGCTAGGTCTGCGAGT+AGG - chr7_4:50264114-50264133 Msa1160360:intron 50.0%
CGAAAGCAGGAGGATACATG+TGG - chr7_4:50264257-50264276 Msa1160360:intron 50.0%
CAGGTGCAATCTGCAAGGAT+AGG + chr7_4:50264767-50264786 None:intergenic 50.0%
CCAATCAGGTGCAATCTGCA+AGG + chr7_4:50264772-50264791 None:intergenic 50.0%
CCTTGCAGATTGCACCTGAT+TGG - chr7_4:50264769-50264788 Msa1160360:intron 50.0%
TGCAGATTGCACCTGATTGG+AGG - chr7_4:50264772-50264791 Msa1160360:intron 50.0%
! ACAGCTGCAGGGCTTTTAGT+TGG - chr7_4:50264936-50264955 Msa1160360:intron 50.0%
!! TGGTGTCATTGCTGCAGCAT+TGG - chr7_4:50264956-50264975 Msa1160360:intron 50.0%
GAGTTAACCGTCGTCGATGG+AGG - chr7_4:50262116-50262135 Msa1160360:three_prime_UTR 55.0%
CGCCGGTAAAGAAGTTTCCG+AGG + chr7_4:50262167-50262186 None:intergenic 55.0%
TGACATCACGGTCGCACCAA+GGG + chr7_4:50262200-50262219 None:intergenic 55.0%
ATGACATCACGGTCGCACCA+AGG + chr7_4:50262201-50262220 None:intergenic 55.0%
! CCACTTCGGTGGCGTTTTGA+AGG + chr7_4:50263119-50263138 None:intergenic 55.0%
CCTTCAAAACGCCACCGAAG+TGG - chr7_4:50263116-50263135 Msa1160360:intron 55.0%
CAATGACCCCAGAGCCACTT+CGG + chr7_4:50263133-50263152 None:intergenic 55.0%
CAAGAAAGGAGGGACTGCAG+TGG + chr7_4:50263417-50263436 None:intergenic 55.0%
GATTGCACCTGATTGGAGGC+AGG - chr7_4:50264776-50264795 Msa1160360:intron 55.0%
GACAATGCCTGCCTCCAATC+AGG + chr7_4:50264786-50264805 None:intergenic 55.0%
GGCTTGTGTGCTCATGCAGA+TGG - chr7_4:50264888-50264907 Msa1160360:intron 55.0%
GCATCACTGCAACAGCTGCA+GGG - chr7_4:50264925-50264944 Msa1160360:intron 55.0%
AAACGCCACCGAAGTGGCTC+TGG - chr7_4:50263122-50263141 Msa1160360:intron 60.0%
AACGCCACCGAAGTGGCTCT+GGG - chr7_4:50263123-50263142 Msa1160360:intron 60.0%
TCCTAGGAGTCGGCAGCTTC+TGG - chr7_4:50263629-50263648 Msa1160360:CDS 60.0%
!! TCCAGAAGCTGCCGACTCCT+AGG + chr7_4:50263633-50263652 None:intergenic 60.0%
GGCATCACTGCAACAGCTGC+AGG - chr7_4:50264924-50264943 Msa1160360:intron 60.0%
CCAAGGGATCTGATCGCCGC+CGG + chr7_4:50262184-50262203 None:intergenic 65.0%
! ACGCCACCGAAGTGGCTCTG+GGG - chr7_4:50263124-50263143 Msa1160360:intron 65.0%
TGACCCCAGAGCCACTTCGG+TGG + chr7_4:50263130-50263149 None:intergenic 65.0%
ACTGCAGTGGCCCTAAGGCG+AGG + chr7_4:50263404-50263423 None:intergenic 65.0%
GAGGGACTGCAGTGGCCCTA+AGG + chr7_4:50263409-50263428 None:intergenic 65.0%
CCGGCGGCGATCAGATCCCT+TGG - chr7_4:50262181-50262200 Msa1160360:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 50262010 50265268 50262010 ID=Msa1160360;Name=Msa1160360
chr7_4 mRNA 50262010 50265268 50262010 ID=Msa1160360-mRNA-1;Parent=Msa1160360;Name=Msa1160360-mRNA-1;_AED=0.41;_eAED=0.41;_QI=122|1|1|1|1|1|5|276|167
chr7_4 exon 50262010 50262371 50262010 ID=Msa1160360-mRNA-1:exon:13952;Parent=Msa1160360-mRNA-1
chr7_4 exon 50262438 50262501 50262438 ID=Msa1160360-mRNA-1:exon:13951;Parent=Msa1160360-mRNA-1
chr7_4 exon 50263613 50263734 50263613 ID=Msa1160360-mRNA-1:exon:13950;Parent=Msa1160360-mRNA-1
chr7_4 exon 50264565 50264703 50264565 ID=Msa1160360-mRNA-1:exon:13949;Parent=Msa1160360-mRNA-1
chr7_4 exon 50265054 50265268 50265054 ID=Msa1160360-mRNA-1:exon:13948;Parent=Msa1160360-mRNA-1
chr7_4 five_prime_UTR 50265147 50265268 50265147 ID=Msa1160360-mRNA-1:five_prime_utr;Parent=Msa1160360-mRNA-1
chr7_4 CDS 50265054 50265146 50265054 ID=Msa1160360-mRNA-1:cds;Parent=Msa1160360-mRNA-1
chr7_4 CDS 50264565 50264703 50264565 ID=Msa1160360-mRNA-1:cds;Parent=Msa1160360-mRNA-1
chr7_4 CDS 50263613 50263734 50263613 ID=Msa1160360-mRNA-1:cds;Parent=Msa1160360-mRNA-1
chr7_4 CDS 50262438 50262501 50262438 ID=Msa1160360-mRNA-1:cds;Parent=Msa1160360-mRNA-1
chr7_4 CDS 50262286 50262371 50262286 ID=Msa1160360-mRNA-1:cds;Parent=Msa1160360-mRNA-1
chr7_4 three_prime_UTR 50262010 50262285 50262010 ID=Msa1160360-mRNA-1:three_prime_utr;Parent=Msa1160360-mRNA-1
Gene Sequence

>Msa1160360

ATGGAGGCTAAAATCGGAAGCTTCTTTGAATCCCTCGGAAACTTCTTTACCGGCGGCGATCAGATCCCTTGGTGCGACCGTGATGTCATCTCTGGCTGTGAAAGAGAAGTTGCAGAGGCTTCTAATGGTGACTCTGATGAGCGTAAGAATGAGAGCATAATGAGGTTGTCATGGGCACTTGTTCATTCAAGGCAACAAGAAGATATTCACCGTGGGATTGCCATGCTCGAAACTTCTTTGGGCAATGATAGAAGTCCTTTACATCAAAGAGAGAAGCTTTATCTTCTTGCTGTTGGGTACTACAGGGCTACTGATTATCCTAGGAGTCGGCAGCTTCTGGAGCAATGTTTGGAGATTGCACCTGATTGGAGGCAGGCATTGTCCCTTAAGAAAACAGTCGAAGAACGAATTGCAAAGGATGGTGTAATAGGAATTGGCATCACTGCAACAGCTGCAGGGCTTTTAGTTGGTGTCATTGCTGCAGCATTGGCCCGAAAGAATTGA

Protein sequence

>Msa1160360

MEAKIGSFFESLGNFFTGGDQIPWCDRDVISGCEREVAEASNGDSDERKNESIMRLSWALVHSRQQEDIHRGIAMLETSLGNDRSPLHQREKLYLLAVGYYRATDYPRSRQLLEQCLEIAPDWRQALSLKKTVEERIAKDGVIGIGITATAAGLLVGVIAAALARKN*