Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905380 | XP_003618501.3 | 98.140 | 215 | 4 | 0 | 1 | 215 | 23 | 237 | 3.43e-154 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905380 | sp|P0C8Q9|Y5902_ARATH | 51.515 | 99 | 45 | 2 | 117 | 215 | 150 | 245 | 1.36e-21 | 92.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006550 | Msa0905380 | 0.805376 | 1.375200e-49 | -8.615850e-47 |
| Msa0008840 | Msa0905380 | 0.810079 | 1.377465e-50 | -8.615850e-47 |
| Msa0026660 | Msa0905380 | 0.801121 | 1.045597e-48 | -8.615850e-47 |
| Msa0036370 | Msa0905380 | 0.827824 | 1.263645e-54 | -8.615850e-47 |
| Msa0038870 | Msa0905380 | 0.834706 | 2.566753e-56 | -8.615850e-47 |
| Msa0043730 | Msa0905380 | 0.825023 | 5.874239e-54 | -8.615850e-47 |
| Msa0051860 | Msa0905380 | 0.800824 | 1.202218e-48 | -8.615850e-47 |
| Msa0055100 | Msa0905380 | 0.810877 | 9.264179e-51 | -8.615850e-47 |
| Msa0056030 | Msa0905380 | 0.812382 | 4.360186e-51 | -8.615850e-47 |
| Msa0057370 | Msa0905380 | 0.803176 | 3.949654e-49 | -8.615850e-47 |
| Msa0084430 | Msa0905380 | 0.803163 | 3.974632e-49 | -8.615850e-47 |
| Msa0086420 | Msa0905380 | 0.820353 | 7.172657e-53 | -8.615850e-47 |
| Msa0090030 | Msa0905380 | 0.800018 | 1.754502e-48 | -8.615850e-47 |
| Msa0095010 | Msa0905380 | 0.819684 | 1.020790e-52 | -8.615850e-47 |
| Msa0096980 | Msa0905380 | 0.801492 | 8.776784e-49 | -8.615850e-47 |
| Msa0101180 | Msa0905380 | 0.806889 | 6.605633e-50 | -8.615850e-47 |
| Msa0109590 | Msa0905380 | 0.802645 | 5.084270e-49 | -8.615850e-47 |
| Msa0115460 | Msa0905380 | 0.807343 | 5.295265e-50 | -8.615850e-47 |
| Msa0607510 | Msa0905380 | 0.830705 | 2.526571e-55 | -8.615850e-47 |
| Msa0608710 | Msa0905380 | 0.808062 | 3.725124e-50 | -8.615850e-47 |
| Msa0614510 | Msa0905380 | 0.803557 | 3.293993e-49 | -8.615850e-47 |
| Msa0614990 | Msa0905380 | 0.801513 | 8.689873e-49 | -8.615850e-47 |
| Msa0619920 | Msa0905380 | 0.803130 | 4.037156e-49 | -8.615850e-47 |
| Msa0620330 | Msa0905380 | 0.804466 | 2.131448e-49 | -8.615850e-47 |
| Msa0620620 | Msa0905380 | 0.801304 | 9.593492e-49 | -8.615850e-47 |
| Msa0625790 | Msa0905380 | 0.802671 | 5.023111e-49 | -8.615850e-47 |
| Msa0626940 | Msa0905380 | 0.822773 | 1.979287e-53 | -8.615850e-47 |
| Msa0628290 | Msa0905380 | 0.812096 | 5.035158e-51 | -8.615850e-47 |
| Msa0630950 | Msa0905380 | 0.821126 | 4.765461e-53 | -8.615850e-47 |
| Msa0631350 | Msa0905380 | 0.802212 | 6.245134e-49 | -8.615850e-47 |
| Msa0646130 | Msa0905380 | 0.816043 | 6.777081e-52 | -8.615850e-47 |
| Msa0665080 | Msa0905380 | 0.809993 | 1.437672e-50 | -8.615850e-47 |
| Msa0669190 | Msa0905380 | 0.823495 | 1.343032e-53 | -8.615850e-47 |
| Msa0669720 | Msa0905380 | 0.812865 | 3.418662e-51 | -8.615850e-47 |
| Msa0669760 | Msa0905380 | 0.801861 | 7.374588e-49 | -8.615850e-47 |
| Msa0670270 | Msa0905380 | 0.814089 | 1.839441e-51 | -8.615850e-47 |
| Msa0679550 | Msa0905380 | 0.815292 | 9.961919e-52 | -8.615850e-47 |
| Msa0690550 | Msa0905380 | 0.819819 | 9.504714e-53 | -8.615850e-47 |
| Msa0693790 | Msa0905380 | 0.842460 | 2.550813e-58 | -8.615850e-47 |
| Msa0694840 | Msa0905380 | 0.811657 | 6.274276e-51 | -8.615850e-47 |
| Msa0711490 | Msa0905380 | 0.806408 | 8.344838e-50 | -8.615850e-47 |
| Msa0743530 | Msa0905380 | 0.800654 | 1.302323e-48 | -8.615850e-47 |
| Msa0779090 | Msa0905380 | 0.808998 | 2.351426e-50 | -8.615850e-47 |
| Msa0814250 | Msa0905380 | 0.800438 | 1.440924e-48 | -8.615850e-47 |
| Msa0822170 | Msa0905380 | 0.811063 | 8.441375e-51 | -8.615850e-47 |
| Msa0826760 | Msa0905380 | 0.803098 | 4.099422e-49 | -8.615850e-47 |
| Msa0130520 | Msa0905380 | 0.811813 | 5.801836e-51 | -8.615850e-47 |
| Msa0131450 | Msa0905380 | 0.826314 | 2.903842e-54 | -8.615850e-47 |
| Msa0145010 | Msa0905380 | 0.807375 | 5.213017e-50 | -8.615850e-47 |
| Msa0145150 | Msa0905380 | 0.815863 | 7.434651e-52 | -8.615850e-47 |
| Msa0165970 | Msa0905380 | 0.840663 | 7.591065e-58 | -8.615850e-47 |
| Msa0166750 | Msa0905380 | 0.801070 | 1.070708e-48 | -8.615850e-47 |
| Msa0176330 | Msa0905380 | 0.843083 | 1.742006e-58 | -8.615850e-47 |
| Msa0177270 | Msa0905380 | 0.809972 | 1.452569e-50 | -8.615850e-47 |
| Msa0182280 | Msa0905380 | 0.801752 | 7.764189e-49 | -8.615850e-47 |
| Msa0186770 | Msa0905380 | 0.828523 | 8.575305e-55 | -8.615850e-47 |
| Msa0189520 | Msa0905380 | 0.804573 | 2.024316e-49 | -8.615850e-47 |
| Msa0212750 | Msa0905380 | -0.807534 | 4.823631e-50 | -8.615850e-47 |
| Msa0236270 | Msa0905380 | 0.806766 | 7.012660e-50 | -8.615850e-47 |
| Msa0385490 | Msa0905380 | 0.808253 | 3.392143e-50 | -8.615850e-47 |
| Msa0394340 | Msa0905380 | 0.809570 | 1.773044e-50 | -8.615850e-47 |
| Msa0419520 | Msa0905380 | 0.813133 | 2.986005e-51 | -8.615850e-47 |
| Msa0429950 | Msa0905380 | 0.802440 | 5.604312e-49 | -8.615850e-47 |
| Msa0433530 | Msa0905380 | 0.819646 | 1.041305e-52 | -8.615850e-47 |
| Msa0439890 | Msa0905380 | 0.825289 | 5.082871e-54 | -8.615850e-47 |
| Msa0442200 | Msa0905380 | 0.806737 | 7.114413e-50 | -8.615850e-47 |
| Msa0465550 | Msa0905380 | 0.810317 | 1.223826e-50 | -8.615850e-47 |
| Msa0468130 | Msa0905380 | 0.803764 | 2.983557e-49 | -8.615850e-47 |
| Msa0477260 | Msa0905380 | 0.808805 | 2.585303e-50 | -8.615850e-47 |
| Msa0479330 | Msa0905380 | 0.843216 | 1.605535e-58 | -8.615850e-47 |
| Msa0241740 | Msa0905380 | 0.809144 | 2.187541e-50 | -8.615850e-47 |
| Msa0252240 | Msa0905380 | 0.807319 | 5.357985e-50 | -8.615850e-47 |
| Msa0256330 | Msa0905380 | 0.805790 | 1.126321e-49 | -8.615850e-47 |
| Msa0265160 | Msa0905380 | 0.819961 | 8.819395e-53 | -8.615850e-47 |
| Msa0271360 | Msa0905380 | 0.829969 | 3.821748e-55 | -8.615850e-47 |
| Msa0284820 | Msa0905380 | 0.845838 | 3.163085e-59 | -8.615850e-47 |
| Msa0288730 | Msa0905380 | 0.807403 | 5.142540e-50 | -8.615850e-47 |
| Msa0295330 | Msa0905380 | 0.808804 | 2.586616e-50 | -8.615850e-47 |
| Msa0299520 | Msa0905380 | 0.826921 | 2.080038e-54 | -8.615850e-47 |
| Msa0305890 | Msa0905380 | 0.801130 | 1.040953e-48 | -8.615850e-47 |
| Msa0309880 | Msa0905380 | 0.835918 | 1.268711e-56 | -8.615850e-47 |
| Msa0347610 | Msa0905380 | 0.825548 | 4.413695e-54 | -8.615850e-47 |
| Msa0489610 | Msa0905380 | 0.854698 | 1.035206e-61 | -8.615850e-47 |
| Msa0493920 | Msa0905380 | 0.800634 | 1.314479e-48 | -8.615850e-47 |
| Msa0527910 | Msa0905380 | 0.812555 | 3.997397e-51 | -8.615850e-47 |
| Msa0534410 | Msa0905380 | 0.823222 | 1.556151e-53 | -8.615850e-47 |
| Msa0534900 | Msa0905380 | 0.826227 | 3.045333e-54 | -8.615850e-47 |
| Msa0549590 | Msa0905380 | 0.804503 | 2.093746e-49 | -8.615850e-47 |
| Msa0556790 | Msa0905380 | 0.809520 | 1.817228e-50 | -8.615850e-47 |
| Msa0579370 | Msa0905380 | 0.819205 | 1.312515e-52 | -8.615850e-47 |
| Msa0588240 | Msa0905380 | 0.823153 | 1.614886e-53 | -8.615850e-47 |
| Msa0590650 | Msa0905380 | 0.842874 | 1.980855e-58 | -8.615850e-47 |
| Msa0591710 | Msa0905380 | 0.801273 | 9.731229e-49 | -8.615850e-47 |
| Msa0861470 | Msa0905380 | 0.805564 | 1.256012e-49 | -8.615850e-47 |
| Msa0861570 | Msa0905380 | 0.814467 | 1.517928e-51 | -8.615850e-47 |
| Msa0871990 | Msa0905380 | 0.919428 | 4.560679e-87 | -8.615850e-47 |
| Msa0905380 | Msa0921870 | 0.822190 | 2.704569e-53 | -8.615850e-47 |
| Msa0905380 | Msa0933290 | 0.827182 | 1.801661e-54 | -8.615850e-47 |
| Msa0905380 | Msa0937330 | 0.844611 | 6.789990e-59 | -8.615850e-47 |
| Msa0905380 | Msa0960160 | 0.800754 | 1.242658e-48 | -8.615850e-47 |
| Msa0905380 | Msa0994370 | 0.806017 | 1.008992e-49 | -8.615850e-47 |
| Msa0905380 | Msa1021510 | 0.805938 | 1.048057e-49 | -8.615850e-47 |
| Msa0905380 | Msa1023180 | 0.809716 | 1.648817e-50 | -8.615850e-47 |
| Msa0905380 | Msa1029970 | 0.814303 | 1.650464e-51 | -8.615850e-47 |
| Msa0905380 | Msa1033520 | 0.821462 | 3.985753e-53 | -8.615850e-47 |
| Msa0905380 | Msa1040800 | 0.801414 | 9.104737e-49 | -8.615850e-47 |
| Msa0905380 | Msa1043050 | 0.816659 | 4.935387e-52 | -8.615850e-47 |
| Msa0905380 | Msa1071320 | 0.811924 | 5.488055e-51 | -8.615850e-47 |
| Msa0905380 | Msa1073400 | 0.810865 | 9.319621e-51 | -8.615850e-47 |
| Msa0905380 | Msa1094430 | 0.806833 | 6.787585e-50 | -8.615850e-47 |
| Msa0905380 | Msa1103660 | -0.825584 | 4.328046e-54 | -8.615850e-47 |
| Msa0905380 | Msa1105500 | 0.810895 | 9.183069e-51 | -8.615850e-47 |
| Msa0905380 | Msa1113880 | 0.802566 | 5.278940e-49 | -8.615850e-47 |
| Msa0905380 | Msa1150710 | 0.822349 | 2.483690e-53 | -8.615850e-47 |
| Msa0905380 | Msa1160360 | 0.809563 | 1.779132e-50 | -8.615850e-47 |
| Msa0905380 | Msa1190970 | 0.820237 | 7.625270e-53 | -8.615850e-47 |
| Msa0905380 | Msa1203900 | 0.817257 | 3.622845e-52 | -8.615850e-47 |
| Msa0905380 | Msa1206360 | 0.800541 | 1.372938e-48 | -8.615850e-47 |
| Msa0905380 | Msa1244640 | 0.822206 | 2.681871e-53 | -8.615850e-47 |
| Msa0905380 | Msa1253810 | 0.805855 | 1.091466e-49 | -8.615850e-47 |
| Msa0905380 | Msa1293590 | 0.841103 | 5.822349e-58 | -8.615850e-47 |
| Msa0905380 | Msa1338610 | 0.801862 | 7.370718e-49 | -8.615850e-47 |
| Msa0905380 | Msa1363700 | 0.814017 | 1.908788e-51 | -8.615850e-47 |
| Msa0905380 | Msa1366650 | 0.803958 | 2.718889e-49 | -8.615850e-47 |
| Msa0905380 | Msa1371090 | 0.811793 | 5.860762e-51 | -8.615850e-47 |
| Msa0905380 | Msa1388860 | 0.817294 | 3.553741e-52 | -8.615850e-47 |
| Msa0905380 | Msa1445400 | -0.800254 | 1.570736e-48 | -8.615850e-47 |
| Msa0905380 | Msa1448630 | 0.829345 | 5.421729e-55 | -8.615850e-47 |
| Msa0905380 | Msa1449350 | -0.801126 | 1.043118e-48 | -8.615850e-47 |
| Msa0905380 | Msa1450870 | 0.800615 | 1.326042e-48 | -8.615850e-47 |
| Msa0905380 | Msa1452470 | 0.805167 | 1.521177e-49 | -8.615850e-47 |
| Msa0905380 | Msa1459760 | -0.809471 | 1.861920e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905380 | MtrunA17_Chr6g0453281 | 98.140 | 215 | 4 | 0 | 1 | 215 | 23 | 237 | 3.16e-158 | 437 |
| Msa0905380 | MtrunA17_Chr7g0217561 | 63.721 | 215 | 63 | 2 | 1 | 215 | 18 | 217 | 1.79e-86 | 254 |
| Msa0905380 | MtrunA17_Chr2g0287451 | 39.024 | 123 | 58 | 4 | 93 | 212 | 84 | 192 | 2.03e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0905380 | AT3G01170.1 | 59.898 | 197 | 68 | 3 | 22 | 215 | 27 | 215 | 2.33e-78 | 234 |
| Msa0905380 | AT5G15260.2 | 60.753 | 186 | 62 | 5 | 38 | 215 | 52 | 234 | 8.13e-72 | 218 |
| Msa0905380 | AT5G15260.1 | 60.753 | 186 | 62 | 5 | 38 | 215 | 52 | 234 | 8.13e-72 | 218 |
| Msa0905380 | AT3G06180.1 | 40.000 | 165 | 94 | 3 | 53 | 215 | 66 | 227 | 4.27e-23 | 93.6 |
| Msa0905380 | AT5G19025.1 | 51.515 | 99 | 45 | 2 | 117 | 215 | 150 | 245 | 1.38e-22 | 92.4 |
| Msa0905380 | AT5G19025.2 | 50.526 | 95 | 45 | 1 | 117 | 211 | 150 | 242 | 2.60e-22 | 92.0 |
| Msa0905380 | AT3G01170.2 | 48.684 | 76 | 37 | 1 | 21 | 94 | 26 | 101 | 9.08e-17 | 74.7 |
Find 40 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTATATTTATCTATCTAT+TGG | 0.242876 | 6_2:-3487445 | Msa0905380:CDS |
| GTCATTTCAGATTATGAGTA+TGG | 0.244984 | 6_2:-3487503 | Msa0905380:CDS |
| TAACAGAATTTGATAAACTA+TGG | 0.289659 | 6_2:+3487641 | None:intergenic |
| TGTTGGTAGGTTAGAAGTTC+CGG | 0.289963 | 6_2:-3487128 | Msa0905380:CDS |
| AAGAAGATGGCACCGATTAA+TGG | 0.325801 | 6_2:-3487190 | Msa0905380:CDS |
| CCAATAGATAGATAAATATA+AGG | 0.374350 | 6_2:+3487445 | None:intergenic |
| ATGGCGAATTCGATCGAATT+CGG | 0.383006 | 6_2:-3487718 | Msa0905380:CDS |
| TTTGTGCTGCATTGGCTACA+TGG | 0.387252 | 6_2:-3487411 | Msa0905380:CDS |
| TTCTTCAAACCCTTACAATT+CGG | 0.389737 | 6_2:+3487352 | None:intergenic |
| CGAAGTTTCTTCGTCGGTCC+CGG | 0.401109 | 6_2:+3487109 | None:intergenic |
| GTTGGTAGGTTAGAAGTTCC+GGG | 0.404512 | 6_2:-3487127 | Msa0905380:CDS |
| ATCACTAAAAGTTCAACATA+AGG | 0.412821 | 6_2:+3487529 | None:intergenic |
| CTAATCAATTTCAAAGGAAT+AGG | 0.420647 | 6_2:-3487669 | Msa0905380:CDS |
| GATGGCGGTGTTTGTAAGAA+GGG | 0.429289 | 6_2:-3487262 | Msa0905380:CDS |
| AGCACAGCTCTTCCATTAAT+CGG | 0.433317 | 6_2:+3487178 | None:intergenic |
| ATTGCTGTTGTTATTGCTTG+TGG | 0.436635 | 6_2:-3487565 | Msa0905380:CDS |
| ATGCGGTAATCCGAATTGTA+AGG | 0.440528 | 6_2:-3487362 | Msa0905380:CDS |
| AGATGGCGGTGTTTGTAAGA+AGG | 0.445969 | 6_2:-3487263 | Msa0905380:CDS |
| CTGTGCTTGTGCTGAGAGCT+AGG | 0.461752 | 6_2:-3487162 | Msa0905380:CDS |
| GGTGTGGTTGTTCTGTTGGT+AGG | 0.475981 | 6_2:-3487141 | Msa0905380:CDS |
| GCTAGGTGTGGTTGTTCTGT+TGG | 0.477365 | 6_2:-3487145 | Msa0905380:CDS |
| ATCTTCCGAAGTTTCTTCGT+CGG | 0.488611 | 6_2:+3487103 | None:intergenic |
| TCACTAAAAGTTCAACATAA+GGG | 0.493997 | 6_2:+3487530 | None:intergenic |
| TTGTGCTGCATTGGCTACAT+GGG | 0.507240 | 6_2:-3487410 | Msa0905380:CDS |
| ATCAATTTCAAAGGAATAGG+AGG | 0.510788 | 6_2:-3487666 | Msa0905380:CDS |
| AAGTGTTGTTTGTGCTGCAT+TGG | 0.523765 | 6_2:-3487419 | Msa0905380:CDS |
| ACTTCGGAAGATCAAGAAGT+AGG | 0.555452 | 6_2:-3487092 | None:intergenic |
| AGCAAACTAATCAATTTCAA+AGG | 0.564372 | 6_2:-3487675 | Msa0905380:CDS |
| TGCGGTAATCCGAATTGTAA+GGG | 0.568571 | 6_2:-3487361 | Msa0905380:CDS |
| TGAAGCGGAGCTTAAGAAGA+TGG | 0.571103 | 6_2:-3487203 | Msa0905380:CDS |
| ATTGCCGCGTGATCATCATA+AGG | 0.580739 | 6_2:-3487230 | Msa0905380:CDS |
| CCGCCATCTTTCACAAAAGA+CGG | 0.592301 | 6_2:+3487277 | None:intergenic |
| TCATCATAAGGAACTTGAAG+CGG | 0.636755 | 6_2:-3487218 | Msa0905380:CDS |
| CGGGACCGACGAAGAAACTT+CGG | 0.636873 | 6_2:-3487108 | Msa0905380:CDS |
| TGTGCTGCATTGGCTACATG+GGG | 0.654737 | 6_2:-3487409 | Msa0905380:CDS |
| GTTTGCACAAGTAACAAATG+CGG | 0.681482 | 6_2:-3487379 | Msa0905380:CDS |
| CTTGTGCTGAGAGCTAGGTG+TGG | 0.697858 | 6_2:-3487157 | Msa0905380:CDS |
| GCTGATCTAGATCGATCACA+AGG | 0.698983 | 6_2:+3487610 | None:intergenic |
| GATCTAGATCGATCACAAGG+TGG | 0.717259 | 6_2:+3487613 | None:intergenic |
| AGTTCCTTATGATGATCACG+CGG | 0.724998 | 6_2:+3487226 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAGAATTTGATAAACTA+TGG | + | chr6_2:3487173-3487192 | None:intergenic | 20.0% |
| !! | CCAATAGATAGATAAATATA+AGG | + | chr6_2:3487369-3487388 | None:intergenic | 20.0% |
| !! | CCTTATATTTATCTATCTAT+TGG | - | chr6_2:3487366-3487385 | Msa0905380:CDS | 20.0% |
| ! | AGCAAACTAATCAATTTCAA+AGG | - | chr6_2:3487136-3487155 | Msa0905380:CDS | 25.0% |
| ! | CTAATCAATTTCAAAGGAAT+AGG | - | chr6_2:3487142-3487161 | Msa0905380:CDS | 25.0% |
| ! | TCACTAAAAGTTCAACATAA+GGG | + | chr6_2:3487284-3487303 | None:intergenic | 25.0% |
| ! | ATCACTAAAAGTTCAACATA+AGG | + | chr6_2:3487285-3487304 | None:intergenic | 25.0% |
| ATCAATTTCAAAGGAATAGG+AGG | - | chr6_2:3487145-3487164 | Msa0905380:CDS | 30.0% | |
| GTCATTTCAGATTATGAGTA+TGG | - | chr6_2:3487308-3487327 | Msa0905380:CDS | 30.0% | |
| ! | TATGGTGTGTTTTCTGATTA+TGG | - | chr6_2:3487326-3487345 | Msa0905380:CDS | 30.0% |
| TTCTTCAAACCCTTACAATT+CGG | + | chr6_2:3487462-3487481 | None:intergenic | 30.0% | |
| ! | ATTGCTGTTGTTATTGCTTG+TGG | - | chr6_2:3487246-3487265 | Msa0905380:CDS | 35.0% |
| GTTTGCACAAGTAACAAATG+CGG | - | chr6_2:3487432-3487451 | Msa0905380:CDS | 35.0% | |
| TCATCATAAGGAACTTGAAG+CGG | - | chr6_2:3487593-3487612 | Msa0905380:CDS | 35.0% | |
| ATGGCGAATTCGATCGAATT+CGG | - | chr6_2:3487093-3487112 | Msa0905380:CDS | 40.0% | |
| !! | AAGTGTTGTTTGTGCTGCAT+TGG | - | chr6_2:3487392-3487411 | Msa0905380:CDS | 40.0% |
| ATGCGGTAATCCGAATTGTA+AGG | - | chr6_2:3487449-3487468 | Msa0905380:CDS | 40.0% | |
| TGCGGTAATCCGAATTGTAA+GGG | - | chr6_2:3487450-3487469 | Msa0905380:CDS | 40.0% | |
| AGTTCCTTATGATGATCACG+CGG | + | chr6_2:3487588-3487607 | None:intergenic | 40.0% | |
| !! | AAGAAGATGGCACCGATTAA+TGG | - | chr6_2:3487621-3487640 | Msa0905380:CDS | 40.0% |
| AGCACAGCTCTTCCATTAAT+CGG | + | chr6_2:3487636-3487655 | None:intergenic | 40.0% | |
| ! | TGTTGGTAGGTTAGAAGTTC+CGG | - | chr6_2:3487683-3487702 | Msa0905380:CDS | 40.0% |
| ATCTTCCGAAGTTTCTTCGT+CGG | + | chr6_2:3487711-3487730 | None:intergenic | 40.0% | |
| GATCTAGATCGATCACAAGG+TGG | + | chr6_2:3487201-3487220 | None:intergenic | 45.0% | |
| GCTGATCTAGATCGATCACA+AGG | + | chr6_2:3487204-3487223 | None:intergenic | 45.0% | |
| !! | TTTGTGCTGCATTGGCTACA+TGG | - | chr6_2:3487400-3487419 | Msa0905380:CDS | 45.0% |
| !! | TTGTGCTGCATTGGCTACAT+GGG | - | chr6_2:3487401-3487420 | Msa0905380:CDS | 45.0% |
| ! | TCGCCGTCTTTTGTGAAAGA+TGG | - | chr6_2:3487531-3487550 | Msa0905380:CDS | 45.0% |
| CCGCCATCTTTCACAAAAGA+CGG | + | chr6_2:3487537-3487556 | None:intergenic | 45.0% | |
| ! | CCGTCTTTTGTGAAAGATGG+CGG | - | chr6_2:3487534-3487553 | Msa0905380:CDS | 45.0% |
| ! | AGATGGCGGTGTTTGTAAGA+AGG | - | chr6_2:3487548-3487567 | Msa0905380:CDS | 45.0% |
| ! | GATGGCGGTGTTTGTAAGAA+GGG | - | chr6_2:3487549-3487568 | Msa0905380:CDS | 45.0% |
| ATTGCCGCGTGATCATCATA+AGG | - | chr6_2:3487581-3487600 | Msa0905380:CDS | 45.0% | |
| TGAAGCGGAGCTTAAGAAGA+TGG | - | chr6_2:3487608-3487627 | Msa0905380:CDS | 45.0% | |
| ! | GTTGGTAGGTTAGAAGTTCC+GGG | - | chr6_2:3487684-3487703 | Msa0905380:CDS | 45.0% |
| !! | TGTGCTGCATTGGCTACATG+GGG | - | chr6_2:3487402-3487421 | Msa0905380:CDS | 50.0% |
| GCTAGGTGTGGTTGTTCTGT+TGG | - | chr6_2:3487666-3487685 | Msa0905380:CDS | 50.0% | |
| GGTGTGGTTGTTCTGTTGGT+AGG | - | chr6_2:3487670-3487689 | Msa0905380:CDS | 50.0% | |
| CTGTGCTTGTGCTGAGAGCT+AGG | - | chr6_2:3487649-3487668 | Msa0905380:CDS | 55.0% | |
| CTTGTGCTGAGAGCTAGGTG+TGG | - | chr6_2:3487654-3487673 | Msa0905380:CDS | 55.0% | |
| CGAAGTTTCTTCGTCGGTCC+CGG | + | chr6_2:3487705-3487724 | None:intergenic | 55.0% | |
| CGGGACCGACGAAGAAACTT+CGG | - | chr6_2:3487703-3487722 | Msa0905380:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_2 | gene | 3487093 | 3487740 | 3487093 | ID=Msa0905380;Name=Msa0905380 |
| chr6_2 | mRNA | 3487093 | 3487740 | 3487093 | ID=Msa0905380-mRNA-1;Parent=Msa0905380;Name=Msa0905380-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|215 |
| chr6_2 | exon | 3487093 | 3487740 | 3487093 | ID=Msa0905380-mRNA-1:exon:1047;Parent=Msa0905380-mRNA-1 |
| chr6_2 | CDS | 3487093 | 3487740 | 3487093 | ID=Msa0905380-mRNA-1:cds;Parent=Msa0905380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
