AlfalfaGEDB | Msa1145740

M. sativa cultivar zhongmu-4 / Msa1145740

KEGG: K20476
GO: -
PFAM: PF07064.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145740	XP_003624005.2	92.382	1142	19	3	1	1093	1	1123	0.0	2137

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145740	sp\|Q69ZJ7\|RIC1_MOUSE	24.644	1193	651	35	1	1020	1	1118	1.31e-65	246

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145740	Q2HUD0	92.382	1142	19	3	1	1093	1	1123	0.0	2137

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002680	Msa1145740	0.822895	1.854255e-53	-8.615850e-47
Msa0002710	Msa1145740	0.811561	6.582082e-51	-8.615850e-47
Msa0003220	Msa1145740	0.837475	5.086697e-57	-8.615850e-47
Msa0007970	Msa1145740	0.803382	3.579528e-49	-8.615850e-47
Msa0014570	Msa1145740	0.803972	2.701003e-49	-8.615850e-47
Msa0022750	Msa1145740	-0.838009	3.709674e-57	-8.615850e-47
Msa0031820	Msa1145740	0.802799	4.725551e-49	-8.615850e-47
Msa0032320	Msa1145740	0.805758	1.143792e-49	-8.615850e-47
Msa0039250	Msa1145740	0.815160	1.065997e-51	-8.615850e-47
Msa0041690	Msa1145740	0.800507	1.395262e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145740	MtrunA17_Chr7g0248111	92.382	1142	19	3	1	1093	1	1123	0.0	2137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1145740	AT3G61480.2	69.965	1142	266	8	1	1091	1	1116	0.0	1587
Msa1145740	AT5G28350.1	69.851	1141	273	5	1	1091	1	1120	0.0	1585
Msa1145740	AT5G28350.2	67.485	1141	260	6	1	1091	1	1080	0.0	1510
Msa1145740	AT3G61480.1	67.544	1140	253	9	3	1091	1	1074	0.0	1507
Msa1145740	AT5G28442.1	71.622	74	20	1	1	74	1	73	9.81e-28	107

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Find 281 sgRNAs with CRISPR-Local

Find 726 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCGGATAAGATCAC+AGG	0.538245	7_4:+22601863	None:intergenic
AAACCATGCAAGTTACTTGA+TGG	0.406173	7_4:-22600439	Msa1145740:CDS
AAACTGGCCTGTTCAATATG+TGG	0.573052	7_4:-22604979	Msa1145740:CDS
AAACTGTCTCCTCGATTTCT+AGG	0.296872	7_4:-22600650	Msa1145740:CDS
AAAGAATTGGGACCTGGAGA+TGG	0.517815	7_4:+22603518	None:intergenic
AACCAATATATACAGATGGA+TGG	0.558576	7_4:+22598277	None:intergenic
AAGAAGATGTATATGGCATA+TGG	0.446464	7_4:-22609068	Msa1145740:exon
AAGCTTGTAGCATTTGTAAA+AGG	0.300184	7_4:-22600399	Msa1145740:CDS
AAGGTATGGAAGTGCTCGGC+TGG	0.458411	7_4:-22600247	Msa1145740:CDS
AAGTATGAGCCATTGATGGG+TGG	0.726456	7_4:-22605320	Msa1145740:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAAGATTGATGGAAATGT+GGG	+	chr7_4:22598298-22598317	None:intergenic	30.0%
ATTGAAGATTGATGGAAATG+TGG	+	chr7_4:22598299-22598318	None:intergenic	30.0%
TAAAGGGAATTGAAGATTGA+TGG	+	chr7_4:22598307-22598326	None:intergenic	30.0%
CATAGATCGAGAATTTGTAA+AGG	+	chr7_4:22598324-22598343	None:intergenic	30.0%
AAGAAGATGTATATGGCATA+TGG	-	chr7_4:22598377-22598396	Msa1145740:three_prime_UTR	30.0%
GATAATTCTGATATGGGTTT+GGG	-	chr7_4:22598593-22598612	Msa1145740:three_prime_UTR	30.0%
TTTGTGGAAAATGTTGAAGT+GGG	-	chr7_4:22598732-22598751	Msa1145740:CDS	30.0%
AACTCGCAAGCATATTATAA+GGG	+	chr7_4:22599187-22599206	None:intergenic	30.0%
AAACTCGCAAGCATATTATA+AGG	+	chr7_4:22599188-22599207	None:intergenic	30.0%
GGTTTAAAAAATGGAATACG+AGG	-	chr7_4:22599231-22599250	Msa1145740:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	22598212	22609255	22598212	ID=Msa1145740;Name=Msa1145740
chr7_4	mRNA	22598212	22609255	22598212	ID=Msa1145740-mRNA-1;Parent=Msa1145740;Name=Msa1145740-mRNA-1;_AED=0.12;_eAED=0.12;_QI=171\|0.90\|0.95\|1\|1\|1\|22\|459\|1093
chr7_4	exon	22598212	22598757	22598212	ID=Msa1145740-mRNA-1:exon:5656;Parent=Msa1145740-mRNA-1
chr7_4	exon	22598858	22598920	22598858	ID=Msa1145740-mRNA-1:exon:5655;Parent=Msa1145740-mRNA-1
chr7_4	exon	22599567	22599683	22599567	ID=Msa1145740-mRNA-1:exon:5654;Parent=Msa1145740-mRNA-1
chr7_4	exon	22600209	22600286	22600209	ID=Msa1145740-mRNA-1:exon:5653;Parent=Msa1145740-mRNA-1
chr7_4	exon	22600380	22600515	22600380	ID=Msa1145740-mRNA-1:exon:5652;Parent=Msa1145740-mRNA-1
chr7_4	exon	22600602	22600732	22600602	ID=Msa1145740-mRNA-1:exon:5651;Parent=Msa1145740-mRNA-1
chr7_4	exon	22600838	22600879	22600838	ID=Msa1145740-mRNA-1:exon:5650;Parent=Msa1145740-mRNA-1
chr7_4	exon	22600975	22601034	22600975	ID=Msa1145740-mRNA-1:exon:5649;Parent=Msa1145740-mRNA-1
chr7_4	exon	22601174	22601231	22601174	ID=Msa1145740-mRNA-1:exon:5648;Parent=Msa1145740-mRNA-1
chr7_4	exon	22601714	22601947	22601714	ID=Msa1145740-mRNA-1:exon:5647;Parent=Msa1145740-mRNA-1
chr7_4	exon	22602610	22602722	22602610	ID=Msa1145740-mRNA-1:exon:5646;Parent=Msa1145740-mRNA-1
chr7_4	exon	22602991	22603170	22602991	ID=Msa1145740-mRNA-1:exon:5645;Parent=Msa1145740-mRNA-1
chr7_4	exon	22603496	22603549	22603496	ID=Msa1145740-mRNA-1:exon:5644;Parent=Msa1145740-mRNA-1
chr7_4	exon	22603690	22603863	22603690	ID=Msa1145740-mRNA-1:exon:5643;Parent=Msa1145740-mRNA-1
chr7_4	exon	22604311	22604506	22604311	ID=Msa1145740-mRNA-1:exon:5642;Parent=Msa1145740-mRNA-1
chr7_4	exon	22604795	22605018	22604795	ID=Msa1145740-mRNA-1:exon:5641;Parent=Msa1145740-mRNA-1
chr7_4	exon	22605100	22605532	22605100	ID=Msa1145740-mRNA-1:exon:5640;Parent=Msa1145740-mRNA-1
chr7_4	exon	22605863	22606278	22605863	ID=Msa1145740-mRNA-1:exon:5639;Parent=Msa1145740-mRNA-1
chr7_4	exon	22606449	22606530	22606449	ID=Msa1145740-mRNA-1:exon:5638;Parent=Msa1145740-mRNA-1
chr7_4	exon	22607451	22607599	22607451	ID=Msa1145740-mRNA-1:exon:5637;Parent=Msa1145740-mRNA-1
chr7_4	exon	22608524	22608631	22608524	ID=Msa1145740-mRNA-1:exon:5636;Parent=Msa1145740-mRNA-1
chr7_4	exon	22608938	22609255	22608938	ID=Msa1145740-mRNA-1:exon:5635;Parent=Msa1145740-mRNA-1
chr7_4	five_prime_UTR	22609085	22609255	22609085	ID=Msa1145740-mRNA-1:five_prime_utr;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22608938	22609084	22608938	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22608524	22608631	22608524	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22607451	22607599	22607451	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22606449	22606530	22606449	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22605863	22606278	22605863	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22605100	22605532	22605100	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22604795	22605018	22604795	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22604311	22604506	22604311	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22603690	22603863	22603690	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22603496	22603549	22603496	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22602991	22603170	22602991	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22602610	22602722	22602610	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22601714	22601947	22601714	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22601174	22601231	22601174	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22600975	22601034	22600975	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22600838	22600879	22600838	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22600602	22600732	22600602	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22600380	22600515	22600380	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22600209	22600286	22600209	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22599567	22599683	22599567	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22598858	22598920	22598858	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	CDS	22598671	22598757	22598671	ID=Msa1145740-mRNA-1:cds;Parent=Msa1145740-mRNA-1
chr7_4	three_prime_UTR	22598212	22598670	22598212	ID=Msa1145740-mRNA-1:three_prime_utr;Parent=Msa1145740-mRNA-1

Gene Sequence

>Msa1145740

ATGTATATGGCATATGGATGGCCTCAGGTCATCCCTCTAGACCAAGGACTGTCTCCTTCTGAGCACAAGATTGTTTATTTCAAACTCATCAATCGTTTGTTGTTAATTGTTTCCCCTACTCACTTTGAACTTTGGAGCTCTTCCCAGCATAGAGTGAGATTGGGGAAGTACAAGAGAGATTCAGATTCATTGAAGAGAGAAGGAGAAAACTTGCAGGCTGTGTGGAGTCCTGATGCTAAATTAATTGCTATTCTTACATCTTCTTTCTATCTTCACATTTTCAAGGTCCAATTTTTGGATAAAAAAATATACATTGGTGGGAAACAACCTTCTGCTTTGTGCCTAGCTACCATATCTCTTCTTCTTTCTGAGCAAGTTCCTTTTGCAGCAAAGGATTTGTCAGTGAGCAATATTGTTTGTGATAACAAACATATGCTGCTTGGACTTTCCGATGGAACTTTGTACAGTATGTCTTGGAAGGGGGAGTTCTATGGAGCTTTCCAATTTGATCCACATCCTTCTGCTAGCTTTGACGATTCTCAATTACCACATCCGTTAGAGAATGGTCTTTCTCCTAAAGGCCTCCCAAAAGTTTCTACGCTCAATCACATTCTTCCCAGAAATTCTGAAATCAAGCATCTAGAACTTTGCCTTTCATTGAGGTTGCTATTTGTCTTGTACTCTGATGGGCAACTTGTGTCATGTTCCATTAGTAAGAAAGGGTTAAAGCAAGTTGACTGTATTAAAGCAGAAAAGAGGTTGGCTTGTGGAGATGCTGTATGTGCTTCAGCAGCTCTTGAGCAGGAAATTCTTGCTGTTGGTACCAGAAGAGGAATAGTGGAGTTGTATGATTTGGCTGAATCAACATCGCTTATTCGCACAGTTTCTTTGTATGACTGGGGATTTTCGATGGATGACACTGGCCCTGTTAGTTGCATTGCATGGACACCTGATAATTCTGCTTTTGCCGTTGGGTGGAAGTTAAGGGGGCTTACAGTTTGGTCTGTTTCCGGGTGTCGCTTGATGTCAACAATCCGTCAAATAGGTTTAAGTTCTGTATCTTCTCCAATTGCTAAACCAAACCATGATTGTAAGTATGAGCCATTGATGGGTGGCACCTCACTGATGCAATGGGATGAACATGGATATAGACTTTATGCTATCGAGGAGAAATCTTCAGAGAGAATTATTTCATTCTCTTTTGGAAAATGCTGTCTTAGCAGAGGTGTTTCTGGCACTACATACACCCGACAAGTGATTTATGGTGAAGACAGGTTGCTCATCGTGCAGTCAGAAGAGATTGACGAGCTTAAAATGCTGCATCTTAAGCTTCCAGTTTCTTATATTTCCCAAAACTGGCCTGTTCAATATGTGGCAGCTAGTCAGGACGGAATGTACTTAGCGGTTGCTGGTCTTCATGGTTTGATATTGTATGATATACGAATGAAAAGATGGAGAGTCTTTGGAGATGTTACCCAGGAACAAAAGATTCAGTGTAAGGGCTTGCTATGGCTGGGAAAGATTGTTGTTGTCTGCAACTATATTGATTCTTCCAACACGTATGAATTGCTCTTTTACCCAAGATATCACCTTGATCAAAGCTCATTGCTCTGTCGAAAACCATTGTTTGCAAAACCAATTGTGATGGATGTGTACCAAGATTATATACTTGTTACGTATAGACCATTTGATGTCCATATATTCCATGTGAAATTATTCGGTGAATTAACTCCTTCAGGAAATCCTGATTTACAGGTGTTTGATATTGAGGTCAAATGGGAGCTTTCGCTTCTTGATTTGGATGATGGACGGGAGAGAAATCTTACTGATTCAGTTGAGCTTTTTTGGGTCACTTGTGGCCAGTCTGAGGATAAAACAAATTTAATTGAGGAAGTTTCATGGTTAGATTATGGCCATCGGGGTATGCAGGTTTGGTATCCATCTCCAGGTCCCAATTCTTTTAAGCAGGAGGATTTCTTGCAGTTGGATCCAGAACTGGAGTTTGATCGTGAAGTATACCCTCTGGGACTTCTTCCAAATGCCGGTGTAGTTGTTGGTGTTTCCCAGAGAATGTCATTTCCATCAAGTGCAGAATTCCCATGTTTTGAGCCATCTCCTCAAGCACAAACTATACTGCACTGCCTACTGCGCCATCTTCTTCAGAGGGACAAAATTGAGGAAGCTTTAAGGCTGGCAGAACTATCAGCTGAAAAACCCCATTTTTCTCATTGTCTAGAGTGGCTTCTTTTTACAGTTTTTGAAGCAGATATATCCAGGCCAAATGTAAACAAGAACCAGGTTTCAGTTCTTAAATATGCAAAAACTCTTTTGGAGAAGACCTGTGATCTTATCCGAAATTTTCCAGAGTACCTAGATGTTGTTGTCAGTGTTGCAAGAAAAACAGATGGTCGTCATTGGGCAGATTTGTTCTCTGCTGCTGGAAGATCAACAGAGTATGTCTTTCAAACATCTATGCTCTTCATTTTGATTTCATCGTTGATTAATATTGGATTGTTTGAGGAATGTTTTCAACGTAGATGGTACCGCACTGCAGCTTGCTATATACTTGTAATTGCCAAACTCGAGGGTCCTGCTGTGAGCCAGTACTGTGCTTTACGGTTATTACAGGCAACACTCGTTGATTCTTTATATGAGCTTGCTGGGGAGCTGGTGAGGTTCTTACTAAGATCTGGTAGGGAGTATGACCAAGCATCATCAGCTGATTCAGATAAACTGTCTCCTCGATTTCTAGGCTATTTTCTTTTTCGTTCTGCTGAGCGAAAGCAAGCATTGGATAAAAGCACCTCATTCAAGGAACAAAGTGCTCATGTCACCTCAGTTAAGAATATTTTAGAAAACCATGCAAGTTACTTGATGGCTGGGAAAGAGCTCTCCAAGCTTGTAGCATTTGTAAAAGGCACTCAGTTTGATTTAGTGGAATATCTACAACGCGAAAGGTATGGAAGTGCTCGGCTGGAGAATTTCGCTTCCGGGCTTGAACTAATAAGCCAAAAGCTTCAAATGGAAACATTACAGAGTCGATTGGATGCGGACTTTCTCCTGGCTCATATGTGCTCTGTCAAATTTAAGGAATGGATAGTTGTTCTGGCTACTCTCTTGAGACGTTCTGAGGTTCTTTTTGACTTATTCCGTCATGATTTTCGGTTATGGAAAGCTTACAGCAGCACCCTGCAGTCACAACCAGCCTTTACTGAATATCAAGATTTATTGGAAGACCTGGAAGATAAACTTTCATCTGTTGCAAACGAGGAAGAAAAATGA

Protein sequence

>Msa1145740

MYMAYGWPQVIPLDQGLSPSEHKIVYFKLINRLLLIVSPTHFELWSSSQHRVRLGKYKRDSDSLKREGENLQAVWSPDAKLIAILTSSFYLHIFKVQFLDKKIYIGGKQPSALCLATISLLLSEQVPFAAKDLSVSNIVCDNKHMLLGLSDGTLYSMSWKGEFYGAFQFDPHPSASFDDSQLPHPLENGLSPKGLPKVSTLNHILPRNSEIKHLELCLSLRLLFVLYSDGQLVSCSISKKGLKQVDCIKAEKRLACGDAVCASAALEQEILAVGTRRGIVELYDLAESTSLIRTVSLYDWGFSMDDTGPVSCIAWTPDNSAFAVGWKLRGLTVWSVSGCRLMSTIRQIGLSSVSSPIAKPNHDCKYEPLMGGTSLMQWDEHGYRLYAIEEKSSERIISFSFGKCCLSRGVSGTTYTRQVIYGEDRLLIVQSEEIDELKMLHLKLPVSYISQNWPVQYVAASQDGMYLAVAGLHGLILYDIRMKRWRVFGDVTQEQKIQCKGLLWLGKIVVVCNYIDSSNTYELLFYPRYHLDQSSLLCRKPLFAKPIVMDVYQDYILVTYRPFDVHIFHVKLFGELTPSGNPDLQVFDIEVKWELSLLDLDDGRERNLTDSVELFWVTCGQSEDKTNLIEEVSWLDYGHRGMQVWYPSPGPNSFKQEDFLQLDPELEFDREVYPLGLLPNAGVVVGVSQRMSFPSSAEFPCFEPSPQAQTILHCLLRHLLQRDKIEEALRLAELSAEKPHFSHCLEWLLFTVFEADISRPNVNKNQVSVLKYAKTLLEKTCDLIRNFPEYLDVVVSVARKTDGRHWADLFSAAGRSTEYVFQTSMLFILISSLINIGLFEECFQRRWYRTAACYILVIAKLEGPAVSQYCALRLLQATLVDSLYELAGELVRFLLRSGREYDQASSADSDKLSPRFLGYFLFRSAERKQALDKSTSFKEQSAHVTSVKNILENHASYLMAGKELSKLVAFVKGTQFDLVEYLQRERYGSARLENFASGLELISQKLQMETLQSRLDADFLLAHMCSVKFKEWIVVLATLLRRSEVLFDLFRHDFRLWKAYSSTLQSQPAFTEYQDLLEDLEDKLSSVANEEEK*