AlfalfaGEDB | Msa0330770

M. sativa cultivar zhongmu-4 / Msa0330770

KEGG: -
GO: -
PFAM: PF10184.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330770	XP_013463935.2	89.267	382	13	2	1	354	1	382	0.0	686

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330770	sp\|Q9SR77\|HBPL1_ARATH	30.392	204	100	7	180	350	112	306	4.15e-15	78.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000180	Msa0330770	0.844822	5.957378e-59	-8.615850e-47
Msa0000220	Msa0330770	0.840313	9.373663e-58	-8.615850e-47
Msa0000610	Msa0330770	0.866583	2.563708e-65	-8.615850e-47
Msa0001040	Msa0330770	0.820332	7.254166e-53	-8.615850e-47
Msa0001510	Msa0330770	0.850821	1.325303e-60	-8.615850e-47
Msa0002690	Msa0330770	0.849721	2.696837e-60	-8.615850e-47
Msa0002700	Msa0330770	0.847228	1.320797e-59	-8.615850e-47
Msa0003340	Msa0330770	0.821507	3.893026e-53	-8.615850e-47
Msa0004180	Msa0330770	0.818863	1.569972e-52	-8.615850e-47
Msa0004340	Msa0330770	0.817766	2.781048e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330770	MtrunA17_Chr2g0306771	89.267	382	13	2	1	354	1	382	0.0	686
Msa0330770	MtrunA17_Chr4g0008411	37.234	188	92	6	183	345	11	197	2.87e-21	91.7
Msa0330770	MtrunA17_Chr4g0008421	34.694	196	97	8	182	349	97	289	1.40e-19	87.8
Msa0330770	MtrunA17_Chr7g0266341	32.323	198	102	6	180	349	99	292	1.43e-18	85.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0330770	AT5G20140.1	64.957	351	94	3	33	354	28	378	1.88e-166	469
Msa0330770	AT5G20140.2	64.095	337	92	3	33	340	28	364	5.09e-156	444
Msa0330770	AT2G37970.1	33.971	209	94	8	182	349	41	246	3.39e-18	83.2
Msa0330770	AT3G10130.1	30.392	204	100	7	180	350	112	306	4.22e-16	78.6

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Find 96 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGACAGCAAATTATG+AGG	0.586779	2_4:+45786501	Msa0330770:CDS
AAAAGACATATTAGCAAATA+AGG	0.276348	2_4:+45788850	Msa0330770:three_prime_UTR
AAACCAGAATTGGTCTTTAC+AGG	0.303338	2_4:+45785960	Msa0330770:CDS
AAAGTTTAGTGGAAAACCCA+TGG	0.583126	2_4:+45787498	Msa0330770:CDS
AAATAAGGTGCATGGTCATT+AGG	0.381234	2_4:+45788865	Msa0330770:three_prime_UTR
AAATCATCATGCTTAGTAAT+TGG	0.154857	2_4:-45784923	None:intergenic
AACAGAGAATGACATCAATA+TGG	0.376578	2_4:-45788741	None:intergenic
AACTATTTGGATTGAGACTT+TGG	0.355211	2_4:-45787097	None:intergenic
AAGACCAATTCTGGTTTCCA+TGG	0.488831	2_4:-45785954	None:intergenic
AAGCTAACTGTTTCTTGATT+AGG	0.251086	2_4:-45787442	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAACTAAGCTCAGATTAA+TGG	-	chr2_4:45784774-45784793	None:intergenic	30.0%
CGATAAAAAAAACCGTAAGA+TGG	-	chr2_4:45785041-45785060	None:intergenic	30.0%
ATTTGTATATAGGGTCTGTT+TGG	+	chr2_4:45785142-45785161	Msa0330770:intron	30.0%
TAACCACTTCTAGTATTAAC+GGG	-	chr2_4:45785334-45785353	None:intergenic	30.0%
GTTACTATGAGATATAGACA+CGG	-	chr2_4:45785736-45785755	None:intergenic	30.0%
TTTACAGGAACATCTGTTAT+GGG	+	chr2_4:45785975-45785994	Msa0330770:CDS	30.0%
CAATGACTAGTGTTATCAAT+TGG	+	chr2_4:45786189-45786208	Msa0330770:intron	30.0%
ACAAAAGGATGCATCTTATA+TGG	+	chr2_4:45786759-45786778	Msa0330770:intron	30.0%
TTCGTAGTAGTAGAAACAAA+TGG	+	chr2_4:45786855-45786874	Msa0330770:CDS	30.0%
TGTTAAAAATCTTCATTCGC+AGG	+	chr2_4:45786992-45787011	Msa0330770:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	45784626	45789024	45784626	ID=Msa0330770;Name=Msa0330770
chr2_4	mRNA	45784626	45789024	45784626	ID=Msa0330770-mRNA-1;Parent=Msa0330770;Name=Msa0330770-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.75\|0.66\|1\|0.75\|0.66\|9\|379\|354
chr2_4	exon	45784626	45784787	45784626	ID=Msa0330770-mRNA-1:exon:13842;Parent=Msa0330770-mRNA-1
chr2_4	exon	45784797	45784950	45784797	ID=Msa0330770-mRNA-1:exon:13843;Parent=Msa0330770-mRNA-1
chr2_4	exon	45785901	45786034	45785901	ID=Msa0330770-mRNA-1:exon:13844;Parent=Msa0330770-mRNA-1
chr2_4	exon	45786272	45786340	45786272	ID=Msa0330770-mRNA-1:exon:13845;Parent=Msa0330770-mRNA-1
chr2_4	exon	45786451	45786522	45786451	ID=Msa0330770-mRNA-1:exon:13846;Parent=Msa0330770-mRNA-1
chr2_4	exon	45786837	45786919	45786837	ID=Msa0330770-mRNA-1:exon:13847;Parent=Msa0330770-mRNA-1
chr2_4	exon	45787014	45787145	45787014	ID=Msa0330770-mRNA-1:exon:13848;Parent=Msa0330770-mRNA-1
chr2_4	exon	45787432	45787645	45787432	ID=Msa0330770-mRNA-1:exon:13849;Parent=Msa0330770-mRNA-1
chr2_4	exon	45788601	45789024	45788601	ID=Msa0330770-mRNA-1:exon:13850;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45784626	45784787	45784626	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45784797	45784950	45784797	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45785901	45786034	45785901	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45786272	45786340	45786272	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45786451	45786522	45786451	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45786837	45786919	45786837	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45787014	45787145	45787014	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45787432	45787645	45787432	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	CDS	45788601	45788645	45788601	ID=Msa0330770-mRNA-1:cds;Parent=Msa0330770-mRNA-1
chr2_4	three_prime_UTR	45788646	45789024	45788646	ID=Msa0330770-mRNA-1:three_prime_utr;Parent=Msa0330770-mRNA-1

Gene Sequence

>Msa0330770

ATGGCCACTTCCATTCTCTCCCACCCATTTCCTACAACTTGCACCACTTTCCGGCAACCAACCTCCGCCGTCAACATCCACAACTACTCTCCACTTCTTCTCCAGCCACCACGGAGACACCGTAAAAAAAATCACATTAAATGGGCCATTAATCTGAGCTTAAGTACACAAAAATCGAGTTTTGATTTGCAGCAACTTGTTGCGTTTCTTTACGACGATCTTCCTCACCTCTTTGATGATAAGGGTATTGATAAAAATGCTTATGATGAACGTGTCTTCTTTCGTGACCCAATTACTAAGCATGATGATTTGAGTGGACCTTATGAAATAACTACAAGATGGACCATGGTTATGAAATTCATGCTGCTTCCATGGAAACCAGAATTGGTCTTTACAGGAACATCTGTTATGGGTGTTAACCCAGAAAATGGCAAGTTTTGTAGCCATGTGGACTTTTGGGATTCGCTAAAGAAAAATGACTATTTTTCATTTGAAGGTTTATTGGAAGTATTCAAACAGTTGAGGATTTACAAGACACCAGATTTGGAATCACCCAAATATCAAATATTAAAACGGACAGCAAATTATGAGGTTAGACAGTATGATCCATTCGTAGTAGTAGAAACAAATGGAGACAAGCTATCTGGGAATACCGGCTTTAATGATGTTGCTGGGTATATATTTGGAAAGAATTCCACAGCAGAGAAGATACCGATGACTACTCCTGTATTCACTCAAGCCATCGATATTGACTTGTCCAAAGTCTCAATCCAAATAGTTCTTCCATCAGACAAAGAAACAAAGAGTTTACCAAATCCTAATCAAGAAACAGTTAGCTTGAGAAAGGTAGAAGGAGGCATTGCTGCAGTAATAAAGTTTAGTGGAAAACCCATGGAGGATATTGTTCGCGAAAAGGAGAAAATTTTACGCTCCAATATCATTAAAGATGGTCTGAAACCTCAGCCTGGTTGTTTGCTTGCCCGTTACAATGATCCAGGTCGAACATGGTCCTTCATAATGAGGAATGAAGTGCTCATCTGGCTAGATGACTTCTCATTGGATTAG

Protein sequence

>Msa0330770

MATSILSHPFPTTCTTFRQPTSAVNIHNYSPLLLQPPRRHRKKNHIKWAINLSLSTQKSSFDLQQLVAFLYDDLPHLFDDKGIDKNAYDERVFFRDPITKHDDLSGPYEITTRWTMVMKFMLLPWKPELVFTGTSVMGVNPENGKFCSHVDFWDSLKKNDYFSFEGLLEVFKQLRIYKTPDLESPKYQILKRTANYEVRQYDPFVVVETNGDKLSGNTGFNDVAGYIFGKNSTAEKIPMTTPVFTQAIDIDLSKVSIQIVLPSDKETKSLPNPNQETVSLRKVEGGIAAVIKFSGKPMEDIVREKEKILRSNIIKDGLKPQPGCLLARYNDPGRTWSFIMRNEVLIWLDDFSLD*