Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256990 | GAU41594.1 | 89.037 | 675 | 67 | 3 | 1 | 675 | 1 | 668 | 0.0 | 1246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256990 | sp|Q43077|AMO_PEA | 83.086 | 674 | 111 | 3 | 1 | 673 | 1 | 672 | 0.0 | 1187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256990 | A0A2Z6NA55 | 89.037 | 675 | 67 | 3 | 1 | 675 | 1 | 668 | 0.0 | 1246 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011010 | Msa1256990 | 0.808839 | 2.542483e-50 | -8.615850e-47 |
| Msa0011040 | Msa1256990 | 0.813717 | 2.221760e-51 | -8.615850e-47 |
| Msa0013270 | Msa1256990 | 0.804708 | 1.897494e-49 | -8.615850e-47 |
| Msa0024650 | Msa1256990 | 0.812143 | 4.916096e-51 | -8.615850e-47 |
| Msa0048380 | Msa1256990 | 0.813115 | 3.013437e-51 | -8.615850e-47 |
| Msa0062190 | Msa1256990 | 0.800877 | 1.172574e-48 | -8.615850e-47 |
| Msa0087900 | Msa1256990 | 0.805718 | 1.165923e-49 | -8.615850e-47 |
| Msa0098380 | Msa1256990 | 0.803148 | 4.003719e-49 | -8.615850e-47 |
| Msa0616300 | Msa1256990 | 0.818616 | 1.785796e-52 | -8.615850e-47 |
| Msa0643230 | Msa1256990 | 0.815203 | 1.042779e-51 | -8.615850e-47 |
| Msa0655370 | Msa1256990 | 0.802276 | 6.059297e-49 | -8.615850e-47 |
| Msa0655800 | Msa1256990 | 0.804229 | 2.387412e-49 | -8.615850e-47 |
| Msa0694320 | Msa1256990 | 0.806276 | 8.900714e-50 | -8.615850e-47 |
| Msa0733560 | Msa1256990 | 0.806540 | 7.828857e-50 | -8.615850e-47 |
| Msa0751510 | Msa1256990 | 0.808004 | 3.831679e-50 | -8.615850e-47 |
| Msa0802600 | Msa1256990 | 0.823416 | 1.401730e-53 | -8.615850e-47 |
| Msa0812220 | Msa1256990 | 0.813405 | 2.602414e-51 | -8.615850e-47 |
| Msa0829990 | Msa1256990 | 0.812889 | 3.377823e-51 | -8.615850e-47 |
| Msa0831310 | Msa1256990 | 0.814782 | 1.293122e-51 | -8.615850e-47 |
| Msa0121320 | Msa1256990 | 0.803826 | 2.895819e-49 | -8.615850e-47 |
| Msa0163690 | Msa1256990 | 0.814573 | 1.438383e-51 | -8.615850e-47 |
| Msa1254870 | Msa1256990 | 0.809297 | 2.028203e-50 | -8.615850e-47 |
| Msa1256990 | Msa1263110 | 0.806155 | 9.434532e-50 | -8.615850e-47 |
| Msa1256990 | Msa1297850 | 0.923141 | 3.924806e-89 | -8.615850e-47 |
| Msa1256990 | Msa1320160 | 0.809095 | 2.240791e-50 | -8.615850e-47 |
| Msa1256990 | Msa1323080 | 0.805138 | 1.542907e-49 | -8.615850e-47 |
| Msa1256990 | Msa1328430 | 0.810165 | 1.320351e-50 | -8.615850e-47 |
| Msa1256990 | Msa1368420 | 0.804035 | 2.620139e-49 | -8.615850e-47 |
| Msa1256990 | Msa1383220 | 0.802142 | 6.456540e-49 | -8.615850e-47 |
| Msa1256990 | Msa1407810 | 0.802148 | 6.436314e-49 | -8.615850e-47 |
| Msa1256990 | Msa1437780 | 0.803928 | 2.758481e-49 | -8.615850e-47 |
| Msa0369990 | Msa1256990 | 0.814593 | 1.423744e-51 | -8.615850e-47 |
| Msa0374470 | Msa1256990 | 0.805571 | 1.251559e-49 | -8.615850e-47 |
| Msa0374600 | Msa1256990 | 0.801614 | 8.284388e-49 | -8.615850e-47 |
| Msa0386910 | Msa1256990 | 0.808736 | 2.674672e-50 | -8.615850e-47 |
| Msa0405200 | Msa1256990 | 0.812478 | 4.154539e-51 | -8.615850e-47 |
| Msa0414480 | Msa1256990 | 0.801158 | 1.027619e-48 | -8.615850e-47 |
| Msa0415010 | Msa1256990 | 0.813044 | 3.123549e-51 | -8.615850e-47 |
| Msa0449500 | Msa1256990 | 0.819354 | 1.213744e-52 | -8.615850e-47 |
| Msa0459930 | Msa1256990 | 0.807492 | 4.924199e-50 | -8.615850e-47 |
| Msa0987640 | Msa1256990 | 0.815853 | 7.473538e-52 | -8.615850e-47 |
| Msa1021870 | Msa1256990 | 0.808319 | 3.283682e-50 | -8.615850e-47 |
| Msa1029860 | Msa1256990 | 0.814638 | 1.391083e-51 | -8.615850e-47 |
| Msa1048350 | Msa1256990 | 0.802224 | 6.207841e-49 | -8.615850e-47 |
| Msa1049400 | Msa1256990 | 0.804172 | 2.454025e-49 | -8.615850e-47 |
| Msa1062060 | Msa1256990 | 0.800721 | 1.261706e-48 | -8.615850e-47 |
| Msa1071230 | Msa1256990 | 0.800895 | 1.162966e-48 | -8.615850e-47 |
| Msa1075090 | Msa1256990 | 0.811220 | 7.804852e-51 | -8.615850e-47 |
| Msa1106030 | Msa1256990 | 0.821142 | 4.723859e-53 | -8.615850e-47 |
| Msa0242830 | Msa1256990 | 0.815568 | 8.647607e-52 | -8.615850e-47 |
| Msa0279810 | Msa1256990 | 0.802949 | 4.401319e-49 | -8.615850e-47 |
| Msa0287630 | Msa1256990 | 0.831768 | 1.384380e-55 | -8.615850e-47 |
| Msa0319220 | Msa1256990 | 0.806048 | 9.937372e-50 | -8.615850e-47 |
| Msa0326770 | Msa1256990 | 0.813197 | 2.891340e-51 | -8.615850e-47 |
| Msa0354600 | Msa1256990 | 0.804699 | 1.905666e-49 | -8.615850e-47 |
| Msa1108560 | Msa1256990 | 0.835058 | 2.093168e-56 | -8.615850e-47 |
| Msa1136630 | Msa1256990 | 0.800387 | 1.476242e-48 | -8.615850e-47 |
| Msa1147010 | Msa1256990 | 0.807837 | 4.157699e-50 | -8.615850e-47 |
| Msa1160540 | Msa1256990 | 0.802016 | 6.853236e-49 | -8.615850e-47 |
| Msa1181090 | Msa1256990 | 0.808100 | 3.655641e-50 | -8.615850e-47 |
| Msa1183870 | Msa1256990 | 0.802173 | 6.359894e-49 | -8.615850e-47 |
| Msa1191270 | Msa1256990 | 0.819655 | 1.036030e-52 | -8.615850e-47 |
| Msa1202110 | Msa1256990 | 0.808927 | 2.434857e-50 | -8.615850e-47 |
| Msa1205770 | Msa1256990 | 0.905871 | 2.714859e-80 | -8.615850e-47 |
| Msa1205810 | Msa1256990 | 0.914422 | 1.953784e-84 | -8.615850e-47 |
| Msa1223990 | Msa1256990 | 0.805257 | 1.456543e-49 | -8.615850e-47 |
| Msa0497680 | Msa1256990 | 0.811338 | 7.360754e-51 | -8.615850e-47 |
| Msa0510870 | Msa1256990 | 0.803155 | 3.989547e-49 | -8.615850e-47 |
| Msa0523720 | Msa1256990 | 0.800118 | 1.674430e-48 | -8.615850e-47 |
| Msa0549170 | Msa1256990 | 0.803828 | 2.893672e-49 | -8.615850e-47 |
| Msa0561830 | Msa1256990 | 0.806804 | 6.884888e-50 | -8.615850e-47 |
| Msa0567330 | Msa1256990 | 0.800271 | 1.558273e-48 | -8.615850e-47 |
| Msa0567570 | Msa1256990 | 0.802648 | 5.077244e-49 | -8.615850e-47 |
| Msa0873880 | Msa1256990 | 0.805530 | 1.276581e-49 | -8.615850e-47 |
| Msa0896920 | Msa1256990 | 0.806573 | 7.705034e-50 | -8.615850e-47 |
| Msa0906680 | Msa1256990 | 0.809882 | 1.518617e-50 | -8.615850e-47 |
| Msa0913550 | Msa1256990 | 0.812396 | 4.329403e-51 | -8.615850e-47 |
| Msa0946010 | Msa1256990 | 0.801229 | 9.938134e-49 | -8.615850e-47 |
| Msa0946310 | Msa1256990 | 0.809822 | 1.565011e-50 | -8.615850e-47 |
| Msa0951150 | Msa1256990 | 0.813271 | 2.784849e-51 | -8.615850e-47 |
| Msa0975950 | Msa1256990 | 0.802914 | 4.475606e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256990 | MtrunA17_Chr4g0065981 | 85.141 | 673 | 99 | 1 | 3 | 675 | 4 | 675 | 0.0 | 1217 |
| Msa1256990 | MtrunA17_Chr4g0065961 | 80.689 | 668 | 127 | 2 | 6 | 673 | 1 | 666 | 0.0 | 1133 |
| Msa1256990 | MtrunA17_Chr4g0065991 | 86.220 | 508 | 70 | 0 | 168 | 675 | 1 | 508 | 0.0 | 939 |
| Msa1256990 | MtrunA17_Chr1g0205571 | 57.143 | 672 | 283 | 3 | 6 | 673 | 1 | 671 | 0.0 | 823 |
| Msa1256990 | MtrunA17_Chr4g0023331 | 86.861 | 411 | 54 | 0 | 265 | 675 | 5 | 415 | 0.0 | 761 |
| Msa1256990 | MtrunA17_Chr1g0205541 | 47.583 | 662 | 331 | 5 | 2 | 660 | 10 | 658 | 0.0 | 654 |
| Msa1256990 | MtrunA17_Chr3g0119641 | 44.774 | 641 | 340 | 10 | 31 | 661 | 77 | 713 | 0.0 | 577 |
| Msa1256990 | MtrunA17_Chr4g0023321 | 71.321 | 265 | 72 | 4 | 1 | 264 | 1 | 262 | 1.74e-129 | 382 |
| Msa1256990 | MtrunA17_Chr3g0117081 | 27.023 | 692 | 434 | 19 | 22 | 660 | 63 | 736 | 1.61e-75 | 258 |
| Msa1256990 | MtrunA17_Chr5g0412801 | 28.239 | 687 | 413 | 23 | 32 | 660 | 44 | 708 | 4.00e-73 | 250 |
| Msa1256990 | MtrunA17_Chr8g0368011 | 27.255 | 499 | 295 | 17 | 32 | 481 | 82 | 561 | 7.67e-47 | 176 |
| Msa1256990 | MtrunA17_Chr8g0368021 | 37.795 | 127 | 77 | 2 | 544 | 668 | 37 | 163 | 3.77e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1256990 | AT1G31710.1 | 52.227 | 651 | 302 | 7 | 31 | 673 | 27 | 676 | 0.0 | 707 |
| Msa1256990 | AT1G31690.1 | 52.396 | 647 | 302 | 6 | 32 | 673 | 27 | 672 | 0.0 | 706 |
| Msa1256990 | AT1G31670.1 | 50.772 | 648 | 295 | 9 | 32 | 673 | 107 | 736 | 0.0 | 667 |
| Msa1256990 | AT4G14940.1 | 46.095 | 653 | 337 | 6 | 14 | 660 | 6 | 649 | 0.0 | 629 |
| Msa1256990 | AT4G12290.1 | 43.666 | 671 | 346 | 14 | 23 | 673 | 76 | 734 | 0.0 | 582 |
| Msa1256990 | AT1G62810.1 | 42.485 | 652 | 362 | 10 | 31 | 673 | 59 | 706 | 0.0 | 555 |
| Msa1256990 | AT3G43670.1 | 43.036 | 639 | 351 | 10 | 31 | 660 | 40 | 674 | 0.0 | 552 |
| Msa1256990 | AT4G12290.2 | 42.434 | 608 | 318 | 14 | 23 | 610 | 76 | 671 | 1.15e-169 | 501 |
| Msa1256990 | AT4G12280.1 | 49.135 | 289 | 139 | 2 | 393 | 673 | 5 | 293 | 3.16e-99 | 306 |
| Msa1256990 | AT4G12270.1 | 36.802 | 394 | 212 | 13 | 23 | 390 | 78 | 460 | 1.14e-76 | 253 |
| Msa1256990 | AT2G42490.1 | 27.220 | 687 | 438 | 21 | 23 | 660 | 70 | 743 | 2.23e-72 | 249 |
Find 146 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAGATAGTAATTGATTTA+AGG | 0.166639 | 8_2:-57312237 | Msa1256990:CDS |
| TTCAGGTATACTGGAAATTA+AGG | 0.179273 | 8_2:-57308767 | Msa1256990:CDS |
| GAATACTCTTCTTTGGTTAA+AGG | 0.191305 | 8_2:+57312442 | None:intergenic |
| TTCTTTGATGTTGGCGAGTA+TGG | 0.207924 | 8_2:-57310713 | Msa1256990:CDS |
| AGTGCTTAATATTGGCATTA+TGG | 0.226913 | 8_2:+57308063 | None:intergenic |
| CGGATGAGAACACAGAATTT+AGG | 0.259079 | 8_2:-57311874 | Msa1256990:CDS |
| GTTCAAAGAGAAAGAGTTAT+TGG | 0.263546 | 8_2:-57308564 | Msa1256990:CDS |
| GACAAGAGAATACTCTTCTT+TGG | 0.277511 | 8_2:+57312435 | None:intergenic |
| TGTGACCCAAACATTATAAT+TGG | 0.295340 | 8_2:+57308345 | None:intergenic |
| TATCTTGACCTTGATATTGA+TGG | 0.312207 | 8_2:-57308643 | Msa1256990:CDS |
| ACAATTGTAATTCCAGTAAT+AGG | 0.316826 | 8_2:+57311959 | None:intergenic |
| GTGGCAAGACTGTGTTGTTT+AGG | 0.333387 | 8_2:+57311824 | None:intergenic |
| GGATGAGAACACAGAATTTA+GGG | 0.335102 | 8_2:-57311873 | Msa1256990:CDS |
| AGATCAATGGCCACAGTGTT+AGG | 0.341442 | 8_2:-57311775 | Msa1256990:intron |
| GTGCTTAATATTGGCATTAT+GGG | 0.347461 | 8_2:+57308064 | None:intergenic |
| ATATATGTTAGGCCTATTAC+TGG | 0.351947 | 8_2:-57311971 | Msa1256990:CDS |
| AGGAGTCTTACGAATTCATT+AGG | 0.353281 | 8_2:+57310518 | None:intergenic |
| GAGAAGATACTTTAGCTGTT+TGG | 0.371659 | 8_2:-57308267 | Msa1256990:CDS |
| AGCATACAGATAGCACTTTC+AGG | 0.372475 | 8_2:-57308784 | Msa1256990:intron |
| ATGGATTTAGCTGGGCAAAT+TGG | 0.375010 | 8_2:-57310898 | Msa1256990:intron |
| AATAGGCCTAACATATATAT+TGG | 0.375065 | 8_2:+57311976 | None:intergenic |
| TCAAAAGCAGTGCTTAATAT+TGG | 0.375787 | 8_2:+57308055 | None:intergenic |
| TATACATACCGCAGGTTTGA+TGG | 0.383102 | 8_2:+57310196 | None:intergenic |
| TGGCAAGACTGTGTTGTTTA+GGG | 0.384366 | 8_2:+57311825 | None:intergenic |
| CCCAGAGATGTTACATGGCC+TGG | 0.384705 | 8_2:-57307980 | Msa1256990:CDS |
| AAAAGCTACTTTGTTCTTTG+AGG | 0.389952 | 8_2:+57312384 | None:intergenic |
| ACCAGGCCATGTAACATCTC+TGG | 0.401042 | 8_2:+57307979 | None:intergenic |
| GATAGCACTTTCAGGTATAC+TGG | 0.401908 | 8_2:-57308776 | Msa1256990:CDS |
| ATTTGTGCATGACTGTTGTT+TGG | 0.402615 | 8_2:+57312413 | None:intergenic |
| AGTGGATGAGATGGAATTGC+TGG | 0.403828 | 8_2:+57308409 | None:intergenic |
| GAATGTATGTATCAATGAAC+TGG | 0.407738 | 8_2:+57310636 | None:intergenic |
| GATGTTGGCGAGTATGGATT+TGG | 0.411471 | 8_2:-57310707 | Msa1256990:CDS |
| ATAGCATTCTTCAAGAGAAT+CGG | 0.412595 | 8_2:+57310596 | None:intergenic |
| GGAGAAAGTGTCTTAAGAAC+TGG | 0.414331 | 8_2:+57308001 | None:intergenic |
| TTCACTATTGCAAGTTCACC+TGG | 0.415482 | 8_2:+57308481 | None:intergenic |
| TAAGCACAAGGATGAGGTTA+AGG | 0.426190 | 8_2:-57308734 | Msa1256990:CDS |
| ATTGCCTTTGTGAATATTGT+CGG | 0.426449 | 8_2:+57312198 | None:intergenic |
| CGAGGGATTGTTATAACACT+TGG | 0.427479 | 8_2:+57312301 | None:intergenic |
| TAGCATTCTTCAAGAGAATC+GGG | 0.427906 | 8_2:+57310597 | None:intergenic |
| GTTCATCAACCGAGAGCGTT+GGG | 0.430075 | 8_2:+57312170 | None:intergenic |
| TAACACTGTGGCCATTGATC+TGG | 0.431893 | 8_2:+57311777 | None:intergenic |
| TTTGTAAGAAGAGGAGTGTC+AGG | 0.437899 | 8_2:+57312509 | None:intergenic |
| GTTTGTTCTACTTTCACAAT+GGG | 0.439623 | 8_2:-57312064 | Msa1256990:CDS |
| AGCTGGAGTGATATTATCAT+TGG | 0.439852 | 8_2:-57310849 | Msa1256990:CDS |
| ATGGGAAAATCTTCTTGTGC+TGG | 0.444846 | 8_2:+57308082 | None:intergenic |
| CCGAAGTAAACTTGATAGTA+AGG | 0.446212 | 8_2:-57310280 | Msa1256990:CDS |
| CTATGACAACGTTGTAGATT+GGG | 0.446410 | 8_2:-57310237 | Msa1256990:CDS |
| GATTGTTATAACACTTGGTT+CGG | 0.448572 | 8_2:+57312306 | None:intergenic |
| ACTATGACAACGTTGTAGAT+TGG | 0.450809 | 8_2:-57310238 | Msa1256990:CDS |
| TCAGGTATACTGGAAATTAA+GGG | 0.452813 | 8_2:-57308766 | Msa1256990:CDS |
| AGCTACTTTGTTCTTTGAGG+TGG | 0.453700 | 8_2:+57312387 | None:intergenic |
| TTTAAGACTTTCTTTGATGT+TGG | 0.457245 | 8_2:-57310722 | Msa1256990:CDS |
| ATGTGGCGTCACACTGAAAC+CGG | 0.458552 | 8_2:-57310545 | Msa1256990:CDS |
| AAAACTCGTCTGATGGATCT+TGG | 0.459489 | 8_2:+57310747 | None:intergenic |
| ACTTTCACAATGGGATGGTA+TGG | 0.469858 | 8_2:-57312055 | Msa1256990:CDS |
| GTAAAAGCACCACGTATTTG+TGG | 0.470697 | 8_2:+57308367 | None:intergenic |
| TGGCCATTGATCTGGAAGCC+TGG | 0.471032 | 8_2:+57311785 | None:intergenic |
| TTCCTCTCGAAGAAATTAGT+TGG | 0.487717 | 8_2:+57308025 | None:intergenic |
| GCGGGTGTTGAAAATGCAAT+GGG | 0.496765 | 8_2:+57312470 | None:intergenic |
| TCAATGAACTGGGCATTTGA+TGG | 0.497827 | 8_2:+57310647 | None:intergenic |
| TGTTTGTACCATCAATATCA+AGG | 0.502446 | 8_2:+57308635 | None:intergenic |
| CAATGGTTTCCCAACGCTCT+CGG | 0.502799 | 8_2:-57312179 | Msa1256990:CDS |
| GACAATATTCACAAAGGCAA+TGG | 0.505606 | 8_2:-57312196 | Msa1256990:CDS |
| GCTACTTTGTTCTTTGAGGT+GGG | 0.507842 | 8_2:+57312388 | None:intergenic |
| TTAAATCAATTACTATCTCA+TGG | 0.508058 | 8_2:+57312239 | None:intergenic |
| TTAAAGTAAAACTCGTCTGA+TGG | 0.510422 | 8_2:+57310740 | None:intergenic |
| ATGGAATTGCTGGGATCAAA+CGG | 0.516903 | 8_2:+57308419 | None:intergenic |
| ACACTGCCAATATATATGTT+AGG | 0.519464 | 8_2:-57311982 | Msa1256990:CDS |
| ATGGAGAAGAGAAAAGTAGT+AGG | 0.529413 | 8_2:-57312036 | Msa1256990:CDS |
| CCTTACTATCAAGTTTACTT+CGG | 0.531083 | 8_2:+57310280 | None:intergenic |
| TCGTCTGATGGATCTTGGTA+TGG | 0.531320 | 8_2:+57310752 | None:intergenic |
| GGTCCAGGCTTCCAGATCAA+TGG | 0.535158 | 8_2:-57311788 | Msa1256990:CDS |
| CAAGATAGTAAATGTATAAG+TGG | 0.535451 | 8_2:+57308659 | None:intergenic |
| TGTTCATCAACCGAGAGCGT+TGG | 0.536879 | 8_2:+57312169 | None:intergenic |
| TCACATCAGAGCCAACCATT+CGG | 0.540930 | 8_2:-57311848 | Msa1256990:CDS |
| ATAGGATTTGATGTGCGAGC+TGG | 0.541558 | 8_2:-57310866 | Msa1256990:CDS |
| ATCTGGAAGCCTGGACCTTG+AGG | 0.542953 | 8_2:+57311794 | None:intergenic |
| TCAGTTAAAAGTGGATGAGA+TGG | 0.543079 | 8_2:+57308400 | None:intergenic |
| ATCACAATTGGACTTTCCCC+AGG | 0.545711 | 8_2:-57308499 | Msa1256990:CDS |
| TAATCATCCTCAGTTAAAAG+TGG | 0.547068 | 8_2:+57308391 | None:intergenic |
| CTCGTCGTGTATTATACAAA+GGG | 0.547283 | 8_2:-57310796 | Msa1256990:CDS |
| AAACTACGATTTGTAAGAAG+AGG | 0.548902 | 8_2:+57312500 | None:intergenic |
| ACTCATCAACCTCAAGGTCC+AGG | 0.550206 | 8_2:-57311803 | Msa1256990:CDS |
| AGTAAATGTATAAGTGGTCG+TGG | 0.551651 | 8_2:+57308665 | None:intergenic |
| ATGAACAAACCGTTGCGGTA+AGG | 0.552097 | 8_2:-57312153 | Msa1256990:CDS |
| CCAGGCCATGTAACATCTCT+GGG | 0.552849 | 8_2:+57307980 | None:intergenic |
| CTCTATGTTGATCATAGCCA+TGG | 0.553409 | 8_2:-57308289 | Msa1256990:CDS |
| GTTGTTTAGGGCCGAATGGT+TGG | 0.554904 | 8_2:+57311837 | None:intergenic |
| TCCGACATCGTTTCCGACCG+CGG | 0.557899 | 8_2:+57308444 | None:intergenic |
| AGCGGGTGTTGAAAATGCAA+TGG | 0.558186 | 8_2:+57312469 | None:intergenic |
| AGTAAGGAGTATAGTTACTG+TGG | 0.558510 | 8_2:-57310264 | Msa1256990:CDS |
| ACCGCGGTCGGAAACGATGT+CGG | 0.561820 | 8_2:-57308445 | Msa1256990:CDS |
| TTCATTGATGCAATGAAAGG+AGG | 0.563816 | 8_2:+57312115 | None:intergenic |
| CGAGAAAACAAGTTTAAAGA+CGG | 0.565335 | 8_2:-57308605 | Msa1256990:CDS |
| AGTTATTGAAGCTGTGCCTA+CGG | 0.569794 | 8_2:-57311894 | Msa1256990:CDS |
| AAACATTAAGCACAAGGATG+AGG | 0.570599 | 8_2:-57308740 | Msa1256990:CDS |
| CAGCTAAAGTATCTTCTCCA+TGG | 0.571385 | 8_2:+57308272 | None:intergenic |
| TTTCTCCCAGAGATGTTACA+TGG | 0.571991 | 8_2:-57307985 | Msa1256990:CDS |
| TAATGGTAGCCTTACCGCAA+CGG | 0.572425 | 8_2:+57312144 | None:intergenic |
| GTTCTACTTTCACAATGGGA+TGG | 0.574075 | 8_2:-57312060 | Msa1256990:CDS |
| GGAAGATCTACATGGTACCT+TGG | 0.578264 | 8_2:-57308713 | Msa1256990:CDS |
| GATTGGGAGTTCAAAACAAG+TGG | 0.579254 | 8_2:-57310221 | Msa1256990:CDS |
| TCTCGTCGTGTATTATACAA+AGG | 0.581355 | 8_2:-57310797 | Msa1256990:CDS |
| TTGGTGTCAGCAAACAGCAT+TGG | 0.581742 | 8_2:-57308694 | Msa1256990:CDS |
| GGCCAACTAATTTCTTCGAG+AGG | 0.591472 | 8_2:-57308027 | Msa1256990:CDS |
| CTGTGTTGTTTAGGGCCGAA+TGG | 0.594102 | 8_2:+57311833 | None:intergenic |
| ACATACATTCACTCTGCTGA+CGG | 0.594247 | 8_2:-57310623 | Msa1256990:CDS |
| TTTAGCAGTTTGAGTCTCAG+TGG | 0.599729 | 8_2:+57308540 | None:intergenic |
| TCACTATTGCAAGTTCACCT+GGG | 0.605097 | 8_2:+57308482 | None:intergenic |
| AGTTTGTTCTACTTTCACAA+TGG | 0.606223 | 8_2:-57312065 | Msa1256990:CDS |
| AAGACGGTAAGAATCACTGA+TGG | 0.608281 | 8_2:-57308589 | Msa1256990:CDS |
| CTTGCCACTCATCAACCTCA+AGG | 0.614169 | 8_2:-57311809 | Msa1256990:CDS |
| ATTTGATGGACAATCACGGT+TGG | 0.614633 | 8_2:+57310661 | None:intergenic |
| TACGAATTCATTAGGAACGC+CGG | 0.617548 | 8_2:+57310526 | None:intergenic |
| CACTATTGCAAGTTCACCTG+GGG | 0.620051 | 8_2:+57308483 | None:intergenic |
| CATTAAGCAGTCTAACCTCA+CGG | 0.620479 | 8_2:+57312012 | None:intergenic |
| GAATAGAGACATTGTGAACA+AGG | 0.621351 | 8_2:-57308143 | Msa1256990:CDS |
| CTTTGGTTAAAGGATCAAGC+GGG | 0.622516 | 8_2:+57312452 | None:intergenic |
| GCAAATTGGAAGTTACACAT+AGG | 0.624758 | 8_2:-57310884 | Msa1256990:CDS |
| CATTGTGATGTGGCACGTAG+TGG | 0.626360 | 8_2:-57308119 | Msa1256990:CDS |
| ATTGATGATAGCAATGACAA+AGG | 0.629492 | 8_2:+57312273 | None:intergenic |
| GTAAGGAGTATAGTTACTGT+GGG | 0.630670 | 8_2:-57310263 | Msa1256990:CDS |
| AACAATATAACAATATCATG+TGG | 0.638012 | 8_2:-57310562 | Msa1256990:CDS |
| GGGCATTTGATGGACAATCA+CGG | 0.638441 | 8_2:+57310657 | None:intergenic |
| TTGTAAGAAGAGGAGTGTCA+GGG | 0.641006 | 8_2:+57312510 | None:intergenic |
| AATTCTGTGTTCTCATCCGT+AGG | 0.646497 | 8_2:+57311878 | None:intergenic |
| GGGAACAAACATTAAGCACA+AGG | 0.652766 | 8_2:-57308746 | Msa1256990:CDS |
| TCTTTGGTTAAAGGATCAAG+CGG | 0.653437 | 8_2:+57312451 | None:intergenic |
| GTGGATGAGATGGAATTGCT+GGG | 0.655196 | 8_2:+57308410 | None:intergenic |
| AATGCTGTTTGCTGACACCA+AGG | 0.662444 | 8_2:+57308696 | None:intergenic |
| GCAATGACAAAGGCTTTACG+AGG | 0.670561 | 8_2:+57312283 | None:intergenic |
| AGAAAAGTAGTAGGACCGTG+AGG | 0.677701 | 8_2:-57312027 | Msa1256990:CDS |
| GTCTCCGACAATATTCACAA+AGG | 0.679812 | 8_2:-57312202 | Msa1256990:CDS |
| GAGGTTAAGGAAGATCTACA+TGG | 0.682090 | 8_2:-57308721 | Msa1256990:CDS |
| CAATGACAAAGGCTTTACGA+GGG | 0.683483 | 8_2:+57312284 | None:intergenic |
| ATTGTGATGTGGCACGTAGT+GGG | 0.689785 | 8_2:-57308118 | Msa1256990:CDS |
| GAGAGGATTGAATCTCTCTG+AGG | 0.693702 | 8_2:-57312089 | Msa1256990:CDS |
| AAGTGGTTCCATCAAACCTG+CGG | 0.705775 | 8_2:-57310204 | Msa1256990:intron |
| AGCATTCTTCAAGAGAATCG+GGG | 0.705999 | 8_2:+57310598 | None:intergenic |
| AATGTATGTATCAATGAACT+GGG | 0.711985 | 8_2:+57310637 | None:intergenic |
| AAATGCATTACCTAACACTG+TGG | 0.720465 | 8_2:+57311765 | None:intergenic |
| TGAACAAGGACATTGTGATG+TGG | 0.731915 | 8_2:-57308129 | Msa1256990:CDS |
| TGGACCTTGAGGTTGATGAG+TGG | 0.755738 | 8_2:+57311805 | None:intergenic |
| GATGATTATCCACAAATACG+TGG | 0.767802 | 8_2:-57308376 | Msa1256990:CDS |
| GGTTGATGAACAAACCGTTG+CGG | 0.771723 | 8_2:-57312158 | Msa1256990:CDS |
| CGGGTGTTGAAAATGCAATG+GGG | 0.795860 | 8_2:+57312471 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCATTTATTTATTTATTTTT+TGG | - | chr8_2:57308766-57308785 | Msa1256990:CDS | 10.0% |
| !! | ACTAGTATTATTATTTATTA+GGG | + | chr8_2:57308932-57308951 | None:intergenic | 10.0% |
| !! | TACTAGTATTATTATTTATT+AGG | + | chr8_2:57308933-57308952 | None:intergenic | 10.0% |
| !!! | ATTTTAATCAATAAAAATGA+AGG | + | chr8_2:57308991-57309010 | None:intergenic | 10.0% |
| !!! | GTTTAAAAATAACTTTAAAA+TGG | - | chr8_2:57309463-57309482 | Msa1256990:intron | 10.0% |
| !! | AATAAAAAAAATTAAATCAC+AGG | + | chr8_2:57309543-57309562 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTTTTATTGACT+TGG | - | chr8_2:57309547-57309566 | Msa1256990:intron | 10.0% |
| !! | AGCTATTATATATTTATTTA+TGG | - | chr8_2:57309597-57309616 | Msa1256990:intron | 10.0% |
| !!! | TCAAATATTTTTTTTTTTGA+AGG | + | chr8_2:57310019-57310038 | None:intergenic | 10.0% |
| !!! | ATTTTAGTTATTTTCAATTA+TGG | - | chr8_2:57310388-57310407 | Msa1256990:intron | 10.0% |
| !!! | AACTAAATATTTTTAATTTG+AGG | + | chr8_2:57310599-57310618 | None:intergenic | 10.0% |
| !!! | AAATATTTAGTTTCTTTTTT+AGG | - | chr8_2:57310607-57310626 | Msa1256990:CDS | 10.0% |
| !!! | ATTTTAGTTATTTTCAATTA+TGG | - | chr8_2:57310388-57310407 | Msa1256990:intron | 10.0% |
| !!! | AACTAAATATTTTTAATTTG+AGG | + | chr8_2:57310599-57310618 | None:intergenic | 10.0% |
| !!! | AAATATTTAGTTTCTTTTTT+AGG | - | chr8_2:57310607-57310626 | Msa1256990:CDS | 10.0% |
| !! | AATGTTTCAATATTATTATA+TGG | - | chr8_2:57311707-57311726 | Msa1256990:intron | 10.0% |
| !!! | AATTAATTAATCATACTTTT+TGG | + | chr8_2:57312274-57312293 | None:intergenic | 10.0% |
| !! | AAAAAAATGATATTCTCAAA+TGG | - | chr8_2:57308178-57308197 | Msa1256990:intron | 15.0% |
| !! | AAAAAATGATATTCTCAAAT+GGG | - | chr8_2:57308179-57308198 | Msa1256990:intron | 15.0% |
| !!! | ATTTATTTTTTGGTTACATT+TGG | - | chr8_2:57308776-57308795 | Msa1256990:CDS | 15.0% |
| !! | AAAAAAGGGATAAAAAAAAA+TGG | + | chr8_2:57309217-57309236 | None:intergenic | 15.0% |
| !!! | TAAAAATAACTTTAAAATGG+TGG | - | chr8_2:57309466-57309485 | Msa1256990:intron | 15.0% |
| !! | AATAATATTCAAACTATAGA+TGG | + | chr8_2:57310363-57310382 | None:intergenic | 15.0% |
| !!! | CATGATAAATTTATAGTTTT+TGG | + | chr8_2:57310751-57310770 | None:intergenic | 15.0% |
| !! | AATAATATTCAAACTATAGA+TGG | + | chr8_2:57310363-57310382 | None:intergenic | 15.0% |
| !!! | CATGATAAATTTATAGTTTT+TGG | + | chr8_2:57310751-57310770 | None:intergenic | 15.0% |
| !! | AATATTGAAACATTATCAAT+TGG | + | chr8_2:57311701-57311720 | None:intergenic | 15.0% |
| !!! | TTTTACCAATTATAATGTTT+GGG | - | chr8_2:57312164-57312183 | Msa1256990:CDS | 15.0% |
| !! | TTATAATAGAACTGAAAAAT+GGG | - | chr8_2:57312194-57312213 | Msa1256990:CDS | 15.0% |
| !!! | TGAGAATATCATTTTTTTCA+GGG | + | chr8_2:57308176-57308195 | None:intergenic | 20.0% |
| !!! | TTGAGAATATCATTTTTTTC+AGG | + | chr8_2:57308177-57308196 | None:intergenic | 20.0% |
| !! | TTAAATCAATTACTATCTCA+TGG | + | chr8_2:57308278-57308297 | None:intergenic | 20.0% |
| !!! | ATGAGATAGTAATTGATTTA+AGG | - | chr8_2:57308277-57308296 | Msa1256990:CDS | 20.0% |
| !!! | ATAAATTTTCTATGAAGTGT+TGG | + | chr8_2:57308881-57308900 | None:intergenic | 20.0% |
| !! | TTTGTCTAATGAGTAAAAAA+GGG | + | chr8_2:57309231-57309250 | None:intergenic | 20.0% |
| !!! | TTTTTTACTCATTAGACAAA+GGG | - | chr8_2:57309231-57309250 | Msa1256990:intron | 20.0% |
| !! | TATTTATTTATGGATTTAGC+TGG | - | chr8_2:57309607-57309626 | Msa1256990:intron | 20.0% |
| !! | ATTTATTTATGGATTTAGCT+GGG | - | chr8_2:57309608-57309627 | Msa1256990:intron | 20.0% |
| !! | AACAATATAACAATATCATG+TGG | - | chr8_2:57309952-57309971 | Msa1256990:intron | 20.0% |
| !! | TGTATAGTTTCAACAAAAAA+TGG | - | chr8_2:57310335-57310354 | Msa1256990:intron | 20.0% |
| !!! | AGATTTTCTTTCAATAAAAG+TGG | + | chr8_2:57310727-57310746 | None:intergenic | 20.0% |
| !! | GAAACTATACAATTATCAAT+TGG | + | chr8_2:57311014-57311033 | None:intergenic | 20.0% |
| !! | TGTATAGTTTCAACAAAAAA+TGG | - | chr8_2:57310335-57310354 | Msa1256990:intron | 20.0% |
| !!! | AGATTTTCTTTCAATAAAAG+TGG | + | chr8_2:57310727-57310746 | None:intergenic | 20.0% |
| !!! | CTTTTACCAATTATAATGTT+TGG | - | chr8_2:57312163-57312182 | Msa1256990:CDS | 20.0% |
| !!! | CATTTTTCAGTTCTATTATA+AGG | + | chr8_2:57312195-57312214 | None:intergenic | 20.0% |
| !! | CTTATAATAGAACTGAAAAA+TGG | - | chr8_2:57312193-57312212 | Msa1256990:CDS | 20.0% |
| !!! | GAAAAGCGTAAATTTTATTG+TGG | + | chr8_2:57307980-57307999 | None:intergenic | 25.0% |
| !! | AAAGTAGCTTTTCACTATAT+TGG | - | chr8_2:57308141-57308160 | Msa1256990:CDS | 25.0% |
| !!! | ATGAAAGGAGGATATTTTAA+TGG | + | chr8_2:57308390-57308409 | None:intergenic | 25.0% |
| !! | TTTTTCATTGATGCAATGAA+AGG | + | chr8_2:57308405-57308424 | None:intergenic | 25.0% |
| ! | AATAGGCCTAACATATATAT+TGG | + | chr8_2:57308541-57308560 | None:intergenic | 25.0% |
| ! | ACAATTGTAATTCCAGTAAT+AGG | + | chr8_2:57308558-57308577 | None:intergenic | 25.0% |
| !!! | TATTTTTTGGTTACATTTGG+TGG | - | chr8_2:57308779-57308798 | Msa1256990:intron | 25.0% |
| !!! | ATTTTTTGGTTACATTTGGT+GGG | - | chr8_2:57308780-57308799 | Msa1256990:intron | 25.0% |
| ! | AATTTAGAAAAATAACACCG+TGG | - | chr8_2:57308819-57308838 | Msa1256990:intron | 25.0% |
| !!! | TTTTTAATTGTTGTCAACCA+CGG | + | chr8_2:57308839-57308858 | None:intergenic | 25.0% |
| ! | CTTTGTCTAATGAGTAAAAA+AGG | + | chr8_2:57309232-57309251 | None:intergenic | 25.0% |
| !!! | CTTTTTTACTCATTAGACAA+AGG | - | chr8_2:57309230-57309249 | Msa1256990:intron | 25.0% |
| !!! | CTCTATTAGAAGAGTTTTAA+TGG | - | chr8_2:57309372-57309391 | Msa1256990:intron | 25.0% |
| !! | TTTTAATGGAGATGAATTAC+AGG | - | chr8_2:57309386-57309405 | Msa1256990:intron | 25.0% |
| ! | GTTTACATGATATTATCATG+AGG | + | chr8_2:57309428-57309447 | None:intergenic | 25.0% |
| !!! | TTTTTTTATTGACTTGGACA+TGG | - | chr8_2:57309553-57309572 | Msa1256990:intron | 25.0% |
| !! | TTTAAGACTTTCTTTGATGT+TGG | - | chr8_2:57309792-57309811 | Msa1256990:intron | 25.0% |
| ! | AATGTATGTATCAATGAACT+GGG | + | chr8_2:57309880-57309899 | None:intergenic | 25.0% |
| ! | AAAAAATCAATTGTGAGTAG+TGG | - | chr8_2:57310069-57310088 | Msa1256990:intron | 25.0% |
| ! | TATGAATTTGCATACACTAT+TGG | + | chr8_2:57310115-57310134 | None:intergenic | 25.0% |
| !!! | TACTAGTATGTTTTTTCTTG+TGG | - | chr8_2:57310413-57310432 | Msa1256990:intron | 25.0% |
| !! | TGATGAGATTAACTTTTATG+CGG | - | chr8_2:57310458-57310477 | Msa1256990:intron | 25.0% |
| ! | AGGTCATTTAAATGCTTAAT+TGG | - | chr8_2:57310785-57310804 | Msa1256990:CDS | 25.0% |
| ! | TTACTCCATTATGTTAAAGT+GGG | + | chr8_2:57310835-57310854 | None:intergenic | 25.0% |
| !! | TTTTAACATCAAAGAGTCTT+TGG | - | chr8_2:57310882-57310901 | Msa1256990:CDS | 25.0% |
| ! | ATATTGGGTTACTTATATCT+TGG | + | chr8_2:57310945-57310964 | None:intergenic | 25.0% |
| !!! | TACTAGTATGTTTTTTCTTG+TGG | - | chr8_2:57310413-57310432 | Msa1256990:intron | 25.0% |
| !! | TGATGAGATTAACTTTTATG+CGG | - | chr8_2:57310458-57310477 | Msa1256990:intron | 25.0% |
| ! | AGGTCATTTAAATGCTTAAT+TGG | - | chr8_2:57310785-57310804 | Msa1256990:CDS | 25.0% |
| ! | TTACTCCATTATGTTAAAGT+GGG | + | chr8_2:57310835-57310854 | None:intergenic | 25.0% |
| !! | TTTTAACATCAAAGAGTCTT+TGG | - | chr8_2:57310882-57310901 | Msa1256990:CDS | 25.0% |
| ! | ATATTGGGTTACTTATATCT+TGG | + | chr8_2:57310945-57310964 | None:intergenic | 25.0% |
| ! | CAAGATAGTAAATGTATAAG+TGG | + | chr8_2:57311858-57311877 | None:intergenic | 25.0% |
| ! | AAGCGTAAATTTTATTGTGG+TGG | + | chr8_2:57307977-57307996 | None:intergenic | 30.0% |
| AAACTACGATTTGTAAGAAG+AGG | + | chr8_2:57308017-57308036 | None:intergenic | 30.0% | |
| GAATACTCTTCTTTGGTTAA+AGG | + | chr8_2:57308075-57308094 | None:intergenic | 30.0% | |
| ! | AAAAGCTACTTTGTTCTTTG+AGG | + | chr8_2:57308133-57308152 | None:intergenic | 30.0% |
| GATTGTTATAACACTTGGTT+CGG | + | chr8_2:57308211-57308230 | None:intergenic | 30.0% | |
| ! | ATTGATGATAGCAATGACAA+AGG | + | chr8_2:57308244-57308263 | None:intergenic | 30.0% |
| ATTGCCTTTGTGAATATTGT+CGG | + | chr8_2:57308319-57308338 | None:intergenic | 30.0% | |
| ATTGCATCAATGAAAAAGAG+AGG | - | chr8_2:57308408-57308427 | Msa1256990:CDS | 30.0% | |
| ! | AGTTTGTTCTACTTTCACAA+TGG | - | chr8_2:57308449-57308468 | Msa1256990:CDS | 30.0% |
| GTTTGTTCTACTTTCACAAT+GGG | - | chr8_2:57308450-57308469 | Msa1256990:CDS | 30.0% | |
| ACACTGCCAATATATATGTT+AGG | - | chr8_2:57308532-57308551 | Msa1256990:CDS | 30.0% | |
| ATATATGTTAGGCCTATTAC+TGG | - | chr8_2:57308543-57308562 | Msa1256990:CDS | 30.0% | |
| AAAAGTCAAATTGTACCCAA+AGG | - | chr8_2:57309177-57309196 | Msa1256990:intron | 30.0% | |
| TACCCAAAGGATTTAAATGA+AGG | - | chr8_2:57309190-57309209 | Msa1256990:intron | 30.0% | |
| ACCCAAAGGATTTAAATGAA+GGG | - | chr8_2:57309191-57309210 | Msa1256990:intron | 30.0% | |
| TTAAAGTAAAACTCGTCTGA+TGG | + | chr8_2:57309777-57309796 | None:intergenic | 30.0% | |
| GAATGTATGTATCAATGAAC+TGG | + | chr8_2:57309881-57309900 | None:intergenic | 30.0% | |
| ATAGCATTCTTCAAGAGAAT+CGG | + | chr8_2:57309921-57309940 | None:intergenic | 30.0% | |
| CCTTACTATCAAGTTTACTT+CGG | + | chr8_2:57310237-57310256 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTGGTATGAATGA+TGG | - | chr8_2:57310425-57310444 | Msa1256990:intron | 30.0% |
| TTTCTTGTGGTATGAATGAT+GGG | - | chr8_2:57310426-57310445 | Msa1256990:intron | 30.0% | |
| !!! | GTATGAATGATGGGTTTTTT+AGG | - | chr8_2:57310435-57310454 | Msa1256990:intron | 30.0% |
| GTAATCAAATCATGCTATAG+AGG | - | chr8_2:57310556-57310575 | Msa1256990:CDS | 30.0% | |
| GTTACTCCATTATGTTAAAG+TGG | + | chr8_2:57310836-57310855 | None:intergenic | 30.0% | |
| ! | CTTTAACATAATGGAGTAAC+TGG | - | chr8_2:57310836-57310855 | Msa1256990:CDS | 30.0% |
| AATATAAAGCATGTGTCTCA+CGG | + | chr8_2:57310863-57310882 | None:intergenic | 30.0% | |
| AACCACGTGTTAAACATATT+GGG | + | chr8_2:57310960-57310979 | None:intergenic | 30.0% | |
| AAACCACGTGTTAAACATAT+TGG | + | chr8_2:57310961-57310980 | None:intergenic | 30.0% | |
| ! | TTTTCTTGTGGTATGAATGA+TGG | - | chr8_2:57310425-57310444 | Msa1256990:intron | 30.0% |
| TTTCTTGTGGTATGAATGAT+GGG | - | chr8_2:57310426-57310445 | Msa1256990:intron | 30.0% | |
| !!! | GTATGAATGATGGGTTTTTT+AGG | - | chr8_2:57310435-57310454 | Msa1256990:intron | 30.0% |
| GTAATCAAATCATGCTATAG+AGG | - | chr8_2:57310556-57310575 | Msa1256990:CDS | 30.0% | |
| GTTACTCCATTATGTTAAAG+TGG | + | chr8_2:57310836-57310855 | None:intergenic | 30.0% | |
| ! | CTTTAACATAATGGAGTAAC+TGG | - | chr8_2:57310836-57310855 | Msa1256990:CDS | 30.0% |
| AATATAAAGCATGTGTCTCA+CGG | + | chr8_2:57310863-57310882 | None:intergenic | 30.0% | |
| AACCACGTGTTAAACATATT+GGG | + | chr8_2:57310960-57310979 | None:intergenic | 30.0% | |
| AAACCACGTGTTAAACATAT+TGG | + | chr8_2:57310961-57310980 | None:intergenic | 30.0% | |
| TTCAGGTATACTGGAAATTA+AGG | - | chr8_2:57311747-57311766 | Msa1256990:intron | 30.0% | |
| TCAGGTATACTGGAAATTAA+GGG | - | chr8_2:57311748-57311767 | Msa1256990:intron | 30.0% | |
| TATCTTGACCTTGATATTGA+TGG | - | chr8_2:57311871-57311890 | Msa1256990:CDS | 30.0% | |
| TGTTTGTACCATCAATATCA+AGG | + | chr8_2:57311882-57311901 | None:intergenic | 30.0% | |
| CGAGAAAACAAGTTTAAAGA+CGG | - | chr8_2:57311909-57311928 | Msa1256990:CDS | 30.0% | |
| GTTCAAAGAGAAAGAGTTAT+TGG | - | chr8_2:57311950-57311969 | Msa1256990:CDS | 30.0% | |
| TCAGATGCAAAAATCACAAT+TGG | - | chr8_2:57312003-57312022 | Msa1256990:CDS | 30.0% | |
| TAATCATCCTCAGTTAAAAG+TGG | + | chr8_2:57312126-57312145 | None:intergenic | 30.0% | |
| TGTGACCCAAACATTATAAT+TGG | + | chr8_2:57312172-57312191 | None:intergenic | 30.0% | |
| ATTAAAATGTACGTTTGCAC+AGG | - | chr8_2:57312349-57312368 | Msa1256990:CDS | 30.0% | |
| GTGCTTAATATTGGCATTAT+GGG | + | chr8_2:57312453-57312472 | None:intergenic | 30.0% | |
| AGTGCTTAATATTGGCATTA+TGG | + | chr8_2:57312454-57312473 | None:intergenic | 30.0% | |
| TCAAAAGCAGTGCTTAATAT+TGG | + | chr8_2:57312462-57312481 | None:intergenic | 30.0% | |
| TCTTTGGTTAAAGGATCAAG+CGG | + | chr8_2:57308066-57308085 | None:intergenic | 35.0% | |
| GACAAGAGAATACTCTTCTT+TGG | + | chr8_2:57308082-57308101 | None:intergenic | 35.0% | |
| ATTTGTGCATGACTGTTGTT+TGG | + | chr8_2:57308104-57308123 | None:intergenic | 35.0% | |
| GACAATATTCACAAAGGCAA+TGG | - | chr8_2:57308318-57308337 | Msa1256990:CDS | 35.0% | |
| TTCATTGATGCAATGAAAGG+AGG | + | chr8_2:57308402-57308421 | None:intergenic | 35.0% | |
| ATGGAGAAGAGAAAAGTAGT+AGG | - | chr8_2:57308478-57308497 | Msa1256990:CDS | 35.0% | |
| GGATGAGAACACAGAATTTA+GGG | - | chr8_2:57308641-57308660 | Msa1256990:CDS | 35.0% | |
| AAATGCATTACCTAACACTG+TGG | + | chr8_2:57308752-57308771 | None:intergenic | 35.0% | |
| GCCCTTCATTTAAATCCTTT+GGG | + | chr8_2:57309195-57309214 | None:intergenic | 35.0% | |
| !! | TTAAAATGGTGGATGTCATC+AGG | - | chr8_2:57309477-57309496 | Msa1256990:intron | 35.0% |
| GCAAATTGGAAGTTACACAT+AGG | - | chr8_2:57309630-57309649 | Msa1256990:intron | 35.0% | |
| AGCTGGAGTGATATTATCAT+TGG | - | chr8_2:57309665-57309684 | Msa1256990:intron | 35.0% | |
| TCTCGTCGTGTATTATACAA+AGG | - | chr8_2:57309717-57309736 | Msa1256990:intron | 35.0% | |
| CTCGTCGTGTATTATACAAA+GGG | - | chr8_2:57309718-57309737 | Msa1256990:intron | 35.0% | |
| TAGCATTCTTCAAGAGAATC+GGG | + | chr8_2:57309920-57309939 | None:intergenic | 35.0% | |
| AGGAGTCTTACGAATTCATT+AGG | + | chr8_2:57309999-57310018 | None:intergenic | 35.0% | |
| ! | CCGAAGTAAACTTGATAGTA+AGG | - | chr8_2:57310234-57310253 | Msa1256990:CDS | 35.0% |
| ! | AGTAAGGAGTATAGTTACTG+TGG | - | chr8_2:57310250-57310269 | Msa1256990:CDS | 35.0% |
| ! | GTAAGGAGTATAGTTACTGT+GGG | - | chr8_2:57310251-57310270 | Msa1256990:CDS | 35.0% |
| ACTATGACAACGTTGTAGAT+TGG | - | chr8_2:57310276-57310295 | Msa1256990:CDS | 35.0% | |
| CTATGACAACGTTGTAGATT+GGG | - | chr8_2:57310277-57310296 | Msa1256990:CDS | 35.0% | |
| TAGCTCCCACTTTAACATAA+TGG | - | chr8_2:57310827-57310846 | Msa1256990:CDS | 35.0% | |
| AACCCAATATGTTTAACACG+TGG | - | chr8_2:57310955-57310974 | Msa1256990:intron | 35.0% | |
| TAGCTCCCACTTTAACATAA+TGG | - | chr8_2:57310827-57310846 | Msa1256990:CDS | 35.0% | |
| AACCCAATATGTTTAACACG+TGG | - | chr8_2:57310955-57310974 | Msa1256990:intron | 35.0% | |
| AAACATTAAGCACAAGGATG+AGG | - | chr8_2:57311774-57311793 | Msa1256990:intron | 35.0% | |
| AGTAAATGTATAAGTGGTCG+TGG | + | chr8_2:57311852-57311871 | None:intergenic | 35.0% | |
| GAATCCAAACAAAAAAACCG+CGG | - | chr8_2:57312053-57312072 | Msa1256990:CDS | 35.0% | |
| TCAGTTAAAAGTGGATGAGA+TGG | + | chr8_2:57312117-57312136 | None:intergenic | 35.0% | |
| !! | ATCTCATCCACTTTTAACTG+AGG | - | chr8_2:57312116-57312135 | Msa1256990:CDS | 35.0% |
| GATGATTATCCACAAATACG+TGG | - | chr8_2:57312138-57312157 | Msa1256990:CDS | 35.0% | |
| AATAGAACTGAAAAATGGGC+TGG | - | chr8_2:57312198-57312217 | Msa1256990:CDS | 35.0% | |
| GAGAAGATACTTTAGCTGTT+TGG | - | chr8_2:57312247-57312266 | Msa1256990:CDS | 35.0% | |
| GAATAGAGACATTGTGAACA+AGG | - | chr8_2:57312371-57312390 | Msa1256990:CDS | 35.0% | |
| TTCCTCTCGAAGAAATTAGT+TGG | + | chr8_2:57312492-57312511 | None:intergenic | 35.0% | |
| !! | TTGTAAGAAGAGGAGTGTCA+GGG | + | chr8_2:57308007-57308026 | None:intergenic | 40.0% |
| !! | TTTGTAAGAAGAGGAGTGTC+AGG | + | chr8_2:57308008-57308027 | None:intergenic | 40.0% |
| CTTTGGTTAAAGGATCAAGC+GGG | + | chr8_2:57308065-57308084 | None:intergenic | 40.0% | |
| !! | GCTACTTTGTTCTTTGAGGT+GGG | + | chr8_2:57308129-57308148 | None:intergenic | 40.0% |
| ! | AGCTACTTTGTTCTTTGAGG+TGG | + | chr8_2:57308130-57308149 | None:intergenic | 40.0% |
| CGAGGGATTGTTATAACACT+TGG | + | chr8_2:57308216-57308235 | None:intergenic | 40.0% | |
| CAATGACAAAGGCTTTACGA+GGG | + | chr8_2:57308233-57308252 | None:intergenic | 40.0% | |
| GTCTCCGACAATATTCACAA+AGG | - | chr8_2:57308312-57308331 | Msa1256990:CDS | 40.0% | |
| GTTCTACTTTCACAATGGGA+TGG | - | chr8_2:57308454-57308473 | Msa1256990:CDS | 40.0% | |
| ACTTTCACAATGGGATGGTA+TGG | - | chr8_2:57308459-57308478 | Msa1256990:CDS | 40.0% | |
| CATTAAGCAGTCTAACCTCA+CGG | + | chr8_2:57308505-57308524 | None:intergenic | 40.0% | |
| AGTTATTGAAGCTGTGCCTA+CGG | - | chr8_2:57308620-57308639 | Msa1256990:CDS | 40.0% | |
| AATTCTGTGTTCTCATCCGT+AGG | + | chr8_2:57308639-57308658 | None:intergenic | 40.0% | |
| CGGATGAGAACACAGAATTT+AGG | - | chr8_2:57308640-57308659 | Msa1256990:CDS | 40.0% | |
| !! | TGGCAAGACTGTGTTGTTTA+GGG | + | chr8_2:57308692-57308711 | None:intergenic | 40.0% |
| GGCCCTTCATTTAAATCCTT+TGG | + | chr8_2:57309196-57309215 | None:intergenic | 40.0% | |
| ATGGATTTAGCTGGGCAAAT+TGG | - | chr8_2:57309616-57309635 | Msa1256990:intron | 40.0% | |
| ! | AAAACTCGTCTGATGGATCT+TGG | + | chr8_2:57309770-57309789 | None:intergenic | 40.0% |
| TTCTTTGATGTTGGCGAGTA+TGG | - | chr8_2:57309801-57309820 | Msa1256990:intron | 40.0% | |
| ! | ATTTGATGGACAATCACGGT+TGG | + | chr8_2:57309856-57309875 | None:intergenic | 40.0% |
| TCAATGAACTGGGCATTTGA+TGG | + | chr8_2:57309870-57309889 | None:intergenic | 40.0% | |
| ACATACATTCACTCTGCTGA+CGG | - | chr8_2:57309891-57309910 | Msa1256990:intron | 40.0% | |
| AGCATTCTTCAAGAGAATCG+GGG | + | chr8_2:57309919-57309938 | None:intergenic | 40.0% | |
| TACGAATTCATTAGGAACGC+CGG | + | chr8_2:57309991-57310010 | None:intergenic | 40.0% | |
| GATTGGGAGTTCAAAACAAG+TGG | - | chr8_2:57310293-57310312 | Msa1256990:CDS | 40.0% | |
| TATACATACCGCAGGTTTGA+TGG | + | chr8_2:57310321-57310340 | None:intergenic | 40.0% | |
| GTTGAAACTATACATACCGC+AGG | + | chr8_2:57310329-57310348 | None:intergenic | 40.0% | |
| ! | TGAGCTTAGCTTAGTTGGTA+GGG | - | chr8_2:57310526-57310545 | Msa1256990:intron | 40.0% |
| AGCATTTAAATGACCTGCGT+GGG | + | chr8_2:57310781-57310800 | None:intergenic | 40.0% | |
| AAGCATTTAAATGACCTGCG+TGG | + | chr8_2:57310782-57310801 | None:intergenic | 40.0% | |
| ! | TGAGCTTAGCTTAGTTGGTA+GGG | - | chr8_2:57310526-57310545 | Msa1256990:intron | 40.0% |
| AGCATTTAAATGACCTGCGT+GGG | + | chr8_2:57310781-57310800 | None:intergenic | 40.0% | |
| AAGCATTTAAATGACCTGCG+TGG | + | chr8_2:57310782-57310801 | None:intergenic | 40.0% | |
| AGCATACAGATAGCACTTTC+AGG | - | chr8_2:57311730-57311749 | Msa1256990:intron | 40.0% | |
| ! | GATAGCACTTTCAGGTATAC+TGG | - | chr8_2:57311738-57311757 | Msa1256990:intron | 40.0% |
| GGGAACAAACATTAAGCACA+AGG | - | chr8_2:57311768-57311787 | Msa1256990:intron | 40.0% | |
| TAAGCACAAGGATGAGGTTA+AGG | - | chr8_2:57311780-57311799 | Msa1256990:CDS | 40.0% | |
| GAGGTTAAGGAAGATCTACA+TGG | - | chr8_2:57311793-57311812 | Msa1256990:CDS | 40.0% | |
| AAGACGGTAAGAATCACTGA+TGG | - | chr8_2:57311925-57311944 | Msa1256990:CDS | 40.0% | |
| TTTAGCAGTTTGAGTCTCAG+TGG | + | chr8_2:57311977-57311996 | None:intergenic | 40.0% | |
| TCACTATTGCAAGTTCACCT+GGG | + | chr8_2:57312035-57312054 | None:intergenic | 40.0% | |
| TTCACTATTGCAAGTTCACC+TGG | + | chr8_2:57312036-57312055 | None:intergenic | 40.0% | |
| ATGGAATTGCTGGGATCAAA+CGG | + | chr8_2:57312098-57312117 | None:intergenic | 40.0% | |
| !! | GTAAAAGCACCACGTATTTG+TGG | + | chr8_2:57312150-57312169 | None:intergenic | 40.0% |
| CTCTATGTTGATCATAGCCA+TGG | - | chr8_2:57312225-57312244 | Msa1256990:CDS | 40.0% | |
| ! | CAGCTAAAGTATCTTCTCCA+TGG | + | chr8_2:57312245-57312264 | None:intergenic | 40.0% |
| TGAACAAGGACATTGTGATG+TGG | - | chr8_2:57312385-57312404 | Msa1256990:CDS | 40.0% | |
| ATGGGAAAATCTTCTTGTGC+TGG | + | chr8_2:57312435-57312454 | None:intergenic | 40.0% | |
| !! | GGAGAAAGTGTCTTAAGAAC+TGG | + | chr8_2:57312516-57312535 | None:intergenic | 40.0% |
| TTTCTCCCAGAGATGTTACA+TGG | - | chr8_2:57312529-57312548 | Msa1256990:CDS | 40.0% | |
| !! | CGGGTGTTGAAAATGCAATG+GGG | + | chr8_2:57308046-57308065 | None:intergenic | 45.0% |
| !! | GCGGGTGTTGAAAATGCAAT+GGG | + | chr8_2:57308047-57308066 | None:intergenic | 45.0% |
| !! | AGCGGGTGTTGAAAATGCAA+TGG | + | chr8_2:57308048-57308067 | None:intergenic | 45.0% |
| GCAATGACAAAGGCTTTACG+AGG | + | chr8_2:57308234-57308253 | None:intergenic | 45.0% | |
| !! | GGTTGATGAACAAACCGTTG+CGG | - | chr8_2:57308356-57308375 | Msa1256990:CDS | 45.0% |
| ATGAACAAACCGTTGCGGTA+AGG | - | chr8_2:57308361-57308380 | Msa1256990:CDS | 45.0% | |
| ! | TAATGGTAGCCTTACCGCAA+CGG | + | chr8_2:57308373-57308392 | None:intergenic | 45.0% |
| GAGAGGATTGAATCTCTCTG+AGG | - | chr8_2:57308425-57308444 | Msa1256990:CDS | 45.0% | |
| AGAAAAGTAGTAGGACCGTG+AGG | - | chr8_2:57308487-57308506 | Msa1256990:CDS | 45.0% | |
| TCACATCAGAGCCAACCATT+CGG | - | chr8_2:57308666-57308685 | Msa1256990:CDS | 45.0% | |
| !! | GTGGCAAGACTGTGTTGTTT+AGG | + | chr8_2:57308693-57308712 | None:intergenic | 45.0% |
| TAACACTGTGGCCATTGATC+TGG | + | chr8_2:57308740-57308759 | None:intergenic | 45.0% | |
| AGATCAATGGCCACAGTGTT+AGG | - | chr8_2:57308739-57308758 | Msa1256990:CDS | 45.0% | |
| ATAGGATTTGATGTGCGAGC+TGG | - | chr8_2:57309648-57309667 | Msa1256990:intron | 45.0% | |
| ! | TCGTCTGATGGATCTTGGTA+TGG | + | chr8_2:57309765-57309784 | None:intergenic | 45.0% |
| GATGTTGGCGAGTATGGATT+TGG | - | chr8_2:57309807-57309826 | Msa1256990:intron | 45.0% | |
| ! | GGGCATTTGATGGACAATCA+CGG | + | chr8_2:57309860-57309879 | None:intergenic | 45.0% |
| AAGTGGTTCCATCAAACCTG+CGG | - | chr8_2:57310310-57310329 | Msa1256990:intron | 45.0% | |
| CATCGTGAGCTTAGCTTAGT+TGG | - | chr8_2:57310521-57310540 | Msa1256990:intron | 45.0% | |
| GTGAGCTTAGCTTAGTTGGT+AGG | - | chr8_2:57310525-57310544 | Msa1256990:intron | 45.0% | |
| TTTAAATGACCTGCGTGGGT+GGG | + | chr8_2:57310777-57310796 | None:intergenic | 45.0% | |
| ATTTAAATGACCTGCGTGGG+TGG | + | chr8_2:57310778-57310797 | None:intergenic | 45.0% | |
| CATCGTGAGCTTAGCTTAGT+TGG | - | chr8_2:57310521-57310540 | Msa1256990:intron | 45.0% | |
| GTGAGCTTAGCTTAGTTGGT+AGG | - | chr8_2:57310525-57310544 | Msa1256990:intron | 45.0% | |
| TTTAAATGACCTGCGTGGGT+GGG | + | chr8_2:57310777-57310796 | None:intergenic | 45.0% | |
| ATTTAAATGACCTGCGTGGG+TGG | + | chr8_2:57310778-57310797 | None:intergenic | 45.0% | |
| GGAAGATCTACATGGTACCT+TGG | - | chr8_2:57311801-57311820 | Msa1256990:CDS | 45.0% | |
| ! | AATGCTGTTTGCTGACACCA+AGG | + | chr8_2:57311821-57311840 | None:intergenic | 45.0% |
| !! | TTGGTGTCAGCAAACAGCAT+TGG | - | chr8_2:57311820-57311839 | Msa1256990:CDS | 45.0% |
| ATCACAATTGGACTTTCCCC+AGG | - | chr8_2:57312015-57312034 | Msa1256990:CDS | 45.0% | |
| CACTATTGCAAGTTCACCTG+GGG | + | chr8_2:57312034-57312053 | None:intergenic | 45.0% | |
| CCAAACAAAAAAACCGCGGT+CGG | - | chr8_2:57312057-57312076 | Msa1256990:CDS | 45.0% | |
| GTGGATGAGATGGAATTGCT+GGG | + | chr8_2:57312107-57312126 | None:intergenic | 45.0% | |
| AGTGGATGAGATGGAATTGC+TGG | + | chr8_2:57312108-57312127 | None:intergenic | 45.0% | |
| !! | AGAACTGAAAAATGGGCTGG+TGG | - | chr8_2:57312201-57312220 | Msa1256990:CDS | 45.0% |
| ATTGTGATGTGGCACGTAGT+GGG | - | chr8_2:57312396-57312415 | Msa1256990:CDS | 45.0% | |
| !! | TAAGCACTGCTTTTGAGCTG+AGG | - | chr8_2:57312466-57312485 | Msa1256990:CDS | 45.0% |
| GGCCAACTAATTTCTTCGAG+AGG | - | chr8_2:57312487-57312506 | Msa1256990:CDS | 45.0% | |
| CAATGGTTTCCCAACGCTCT+CGG | - | chr8_2:57308335-57308354 | Msa1256990:CDS | 50.0% | |
| !! | GTTCATCAACCGAGAGCGTT+GGG | + | chr8_2:57308347-57308366 | None:intergenic | 50.0% |
| ! | TGTTCATCAACCGAGAGCGT+TGG | + | chr8_2:57308348-57308367 | None:intergenic | 50.0% |
| ! | GTTGTTTAGGGCCGAATGGT+TGG | + | chr8_2:57308680-57308699 | None:intergenic | 50.0% |
| !! | CTGTGTTGTTTAGGGCCGAA+TGG | + | chr8_2:57308684-57308703 | None:intergenic | 50.0% |
| CTTGCCACTCATCAACCTCA+AGG | - | chr8_2:57308705-57308724 | Msa1256990:CDS | 50.0% | |
| !! | TGGACCTTGAGGTTGATGAG+TGG | + | chr8_2:57308712-57308731 | None:intergenic | 50.0% |
| ACTCATCAACCTCAAGGTCC+AGG | - | chr8_2:57308711-57308730 | Msa1256990:CDS | 50.0% | |
| ATGTGGCGTCACACTGAAAC+CGG | - | chr8_2:57309969-57309988 | Msa1256990:intron | 50.0% | |
| TTAAATGACCTGCGTGGGTG+GGG | + | chr8_2:57310776-57310795 | None:intergenic | 50.0% | |
| TTAAATGACCTGCGTGGGTG+GGG | + | chr8_2:57310776-57310795 | None:intergenic | 50.0% | |
| !!! | CCGACCGCGGTTTTTTTGTT+TGG | + | chr8_2:57312060-57312079 | None:intergenic | 50.0% |
| CATTGTGATGTGGCACGTAG+TGG | - | chr8_2:57312395-57312414 | Msa1256990:CDS | 50.0% | |
| CCAGGCCATGTAACATCTCT+GGG | + | chr8_2:57312537-57312556 | None:intergenic | 50.0% | |
| ACCAGGCCATGTAACATCTC+TGG | + | chr8_2:57312538-57312557 | None:intergenic | 50.0% | |
| ATCTGGAAGCCTGGACCTTG+AGG | + | chr8_2:57308723-57308742 | None:intergenic | 55.0% | |
| GGTCCAGGCTTCCAGATCAA+TGG | - | chr8_2:57308726-57308745 | Msa1256990:CDS | 55.0% | |
| TGGCCATTGATCTGGAAGCC+TGG | + | chr8_2:57308732-57308751 | None:intergenic | 55.0% | |
| CCCAGAGATGTTACATGGCC+TGG | - | chr8_2:57312534-57312553 | Msa1256990:CDS | 55.0% | |
| ATCATGTACCCCACCCACGC+AGG | - | chr8_2:57310765-57310784 | Msa1256990:CDS | 60.0% | |
| ATCATGTACCCCACCCACGC+AGG | - | chr8_2:57310765-57310784 | Msa1256990:CDS | 60.0% | |
| ACCGCGGTCGGAAACGATGT+CGG | - | chr8_2:57312069-57312088 | Msa1256990:CDS | 60.0% | |
| TCCGACATCGTTTCCGACCG+CGG | + | chr8_2:57312073-57312092 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 57307967 | 57312569 | 57307967 | ID=Msa1256990;Name=Msa1256990 |
| chr8_2 | mRNA | 57307967 | 57312569 | 57307967 | ID=Msa1256990-mRNA-1;Parent=Msa1256990;Name=Msa1256990-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|1|1|1|5|0|675 |
| chr8_2 | exon | 57311776 | 57312569 | 57311776 | ID=Msa1256990-mRNA-1:exon:17689;Parent=Msa1256990-mRNA-1 |
| chr8_2 | exon | 57310529 | 57310910 | 57310529 | ID=Msa1256990-mRNA-1:exon:17688;Parent=Msa1256990-mRNA-1 |
| chr8_2 | exon | 57310205 | 57310318 | 57310205 | ID=Msa1256990-mRNA-1:exon:17687;Parent=Msa1256990-mRNA-1 |
| chr8_2 | exon | 57308259 | 57308797 | 57308259 | ID=Msa1256990-mRNA-1:exon:17686;Parent=Msa1256990-mRNA-1 |
| chr8_2 | exon | 57307967 | 57308165 | 57307967 | ID=Msa1256990-mRNA-1:exon:17685;Parent=Msa1256990-mRNA-1 |
| chr8_2 | CDS | 57311776 | 57312569 | 57311776 | ID=Msa1256990-mRNA-1:cds;Parent=Msa1256990-mRNA-1 |
| chr8_2 | CDS | 57310529 | 57310910 | 57310529 | ID=Msa1256990-mRNA-1:cds;Parent=Msa1256990-mRNA-1 |
| chr8_2 | CDS | 57310205 | 57310318 | 57310205 | ID=Msa1256990-mRNA-1:cds;Parent=Msa1256990-mRNA-1 |
| chr8_2 | CDS | 57308259 | 57308797 | 57308259 | ID=Msa1256990-mRNA-1:cds;Parent=Msa1256990-mRNA-1 |
| chr8_2 | CDS | 57307967 | 57308165 | 57307967 | ID=Msa1256990-mRNA-1:cds;Parent=Msa1256990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
