Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071230 | PNX93638.1 | 89.286 | 140 | 15 | 0 | 10 | 149 | 1 | 140 | 6.30e-86 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071230 | sp|A0LHG0|SURE_SYNFM | 44.697 | 132 | 70 | 2 | 18 | 149 | 3 | 131 | 5.47e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071230 | A0A2K3MS27 | 89.286 | 140 | 15 | 0 | 10 | 149 | 1 | 140 | 3.01e-86 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1071230 | 0.831558 | 1.559153e-55 | -8.615850e-47 |
| Msa0048380 | Msa1071230 | 0.802776 | 4.777847e-49 | -8.615850e-47 |
| Msa0073110 | Msa1071230 | 0.803360 | 3.618171e-49 | -8.615850e-47 |
| Msa0074860 | Msa1071230 | -0.801378 | 9.262754e-49 | -8.615850e-47 |
| Msa0087900 | Msa1071230 | 0.809655 | 1.699266e-50 | -8.615850e-47 |
| Msa0092220 | Msa1071230 | 0.838010 | 3.707723e-57 | -8.615850e-47 |
| Msa0615070 | Msa1071230 | 0.813410 | 2.596456e-51 | -8.615850e-47 |
| Msa0616300 | Msa1071230 | 0.808632 | 2.815186e-50 | -8.615850e-47 |
| Msa0620340 | Msa1071230 | 0.818701 | 1.708480e-52 | -8.615850e-47 |
| Msa0655800 | Msa1071230 | 0.802052 | 6.737584e-49 | -8.615850e-47 |
| Msa0657340 | Msa1071230 | 0.831501 | 1.610285e-55 | -8.615850e-47 |
| Msa0660650 | Msa1071230 | 0.818858 | 1.574292e-52 | -8.615850e-47 |
| Msa0672950 | Msa1071230 | 0.817915 | 2.573472e-52 | -8.615850e-47 |
| Msa0672980 | Msa1071230 | 0.819037 | 1.433100e-52 | -8.615850e-47 |
| Msa0682110 | Msa1071230 | 0.824553 | 7.585440e-54 | -8.615850e-47 |
| Msa0682160 | Msa1071230 | 0.825009 | 5.919569e-54 | -8.615850e-47 |
| Msa0698280 | Msa1071230 | 0.803467 | 3.438398e-49 | -8.615850e-47 |
| Msa0701430 | Msa1071230 | 0.820639 | 6.167128e-53 | -8.615850e-47 |
| Msa0751510 | Msa1071230 | 0.816346 | 5.799914e-52 | -8.615850e-47 |
| Msa0754020 | Msa1071230 | -0.805437 | 1.335597e-49 | -8.615850e-47 |
| Msa0793570 | Msa1071230 | 0.844328 | 8.090759e-59 | -8.615850e-47 |
| Msa0794100 | Msa1071230 | 0.802984 | 4.327896e-49 | -8.615850e-47 |
| Msa0802600 | Msa1071230 | 0.803346 | 3.642175e-49 | -8.615850e-47 |
| Msa0803170 | Msa1071230 | 0.807922 | 3.989515e-50 | -8.615850e-47 |
| Msa0807100 | Msa1071230 | -0.803457 | 3.455102e-49 | -8.615850e-47 |
| Msa0814160 | Msa1071230 | 0.811608 | 6.429912e-51 | -8.615850e-47 |
| Msa0828350 | Msa1071230 | 0.806767 | 7.010039e-50 | -8.615850e-47 |
| Msa0829250 | Msa1071230 | -0.801340 | 9.427696e-49 | -8.615850e-47 |
| Msa0829990 | Msa1071230 | 0.853625 | 2.111470e-61 | -8.615850e-47 |
| Msa0831890 | Msa1071230 | 0.800740 | 1.250831e-48 | -8.615850e-47 |
| Msa0833030 | Msa1071230 | -0.802422 | 5.652843e-49 | -8.615850e-47 |
| Msa0127220 | Msa1071230 | -0.802743 | 4.852517e-49 | -8.615850e-47 |
| Msa0129640 | Msa1071230 | 0.800385 | 1.477741e-48 | -8.615850e-47 |
| Msa0134570 | Msa1071230 | 0.800081 | 1.703271e-48 | -8.615850e-47 |
| Msa0141410 | Msa1071230 | 0.812164 | 4.865256e-51 | -8.615850e-47 |
| Msa0150000 | Msa1071230 | 0.804823 | 1.795317e-49 | -8.615850e-47 |
| Msa0150920 | Msa1071230 | 0.818063 | 2.383726e-52 | -8.615850e-47 |
| Msa0177320 | Msa1071230 | 0.824186 | 9.253400e-54 | -8.615850e-47 |
| Msa0190890 | Msa1071230 | 0.802164 | 6.388898e-49 | -8.615850e-47 |
| Msa0197170 | Msa1071230 | 0.823740 | 1.176911e-53 | -8.615850e-47 |
| Msa0233210 | Msa1071230 | 0.801593 | 8.369391e-49 | -8.615850e-47 |
| Msa0238140 | Msa1071230 | 0.801622 | 8.253373e-49 | -8.615850e-47 |
| Msa0369990 | Msa1071230 | 0.862000 | 6.905102e-64 | -8.615850e-47 |
| Msa0374470 | Msa1071230 | 0.800666 | 1.294902e-48 | -8.615850e-47 |
| Msa0378320 | Msa1071230 | 0.807945 | 3.944412e-50 | -8.615850e-47 |
| Msa0386890 | Msa1071230 | 0.821312 | 4.317165e-53 | -8.615850e-47 |
| Msa0386910 | Msa1071230 | 0.802355 | 5.835048e-49 | -8.615850e-47 |
| Msa0403740 | Msa1071230 | -0.812332 | 4.471231e-51 | -8.615850e-47 |
| Msa0405200 | Msa1071230 | 0.819934 | 8.948658e-53 | -8.615850e-47 |
| Msa0417400 | Msa1071230 | 0.836435 | 9.375963e-57 | -8.615850e-47 |
| Msa0426030 | Msa1071230 | 0.802230 | 6.190202e-49 | -8.615850e-47 |
| Msa0427560 | Msa1071230 | 0.815594 | 8.534063e-52 | -8.615850e-47 |
| Msa0427660 | Msa1071230 | 0.807376 | 5.210471e-50 | -8.615850e-47 |
| Msa0449500 | Msa1071230 | 0.805462 | 1.319587e-49 | -8.615850e-47 |
| Msa0456450 | Msa1071230 | -0.807760 | 4.317943e-50 | -8.615850e-47 |
| Msa0458220 | Msa1071230 | 0.801432 | 9.031398e-49 | -8.615850e-47 |
| Msa1041250 | Msa1071230 | 0.812744 | 3.633993e-51 | -8.615850e-47 |
| Msa1066150 | Msa1071230 | 0.800889 | 1.166247e-48 | -8.615850e-47 |
| Msa1071230 | Msa1071350 | 0.807484 | 4.943393e-50 | -8.615850e-47 |
| Msa1071230 | Msa1075090 | 0.807394 | 5.164819e-50 | -8.615850e-47 |
| Msa1071230 | Msa1079820 | 0.800685 | 1.283397e-48 | -8.615850e-47 |
| Msa1071230 | Msa1107250 | 0.800763 | 1.237302e-48 | -8.615850e-47 |
| Msa1071230 | Msa1108560 | 0.823984 | 1.031608e-53 | -8.615850e-47 |
| Msa1071230 | Msa1115980 | 0.811290 | 7.539195e-51 | -8.615850e-47 |
| Msa1071230 | Msa1157200 | 0.807400 | 5.148581e-50 | -8.615850e-47 |
| Msa1071230 | Msa1174280 | 0.812514 | 4.080959e-51 | -8.615850e-47 |
| Msa1071230 | Msa1179340 | 0.831036 | 2.095727e-55 | -8.615850e-47 |
| Msa1071230 | Msa1202110 | 0.830168 | 3.418647e-55 | -8.615850e-47 |
| Msa1071230 | Msa1202470 | 0.807234 | 5.583630e-50 | -8.615850e-47 |
| Msa1071230 | Msa1205770 | 0.824335 | 8.533777e-54 | -8.615850e-47 |
| Msa1071230 | Msa1205810 | 0.820731 | 5.873490e-53 | -8.615850e-47 |
| Msa1071230 | Msa1225890 | 0.801725 | 7.862456e-49 | -8.615850e-47 |
| Msa1071230 | Msa1240490 | 0.816930 | 4.290579e-52 | -8.615850e-47 |
| Msa1071230 | Msa1254870 | 0.829732 | 4.365110e-55 | -8.615850e-47 |
| Msa1071230 | Msa1254910 | 0.811958 | 5.394983e-51 | -8.615850e-47 |
| Msa1071230 | Msa1256990 | 0.800895 | 1.162966e-48 | -8.615850e-47 |
| Msa1071230 | Msa1262650 | 0.804037 | 2.618586e-49 | -8.615850e-47 |
| Msa1071230 | Msa1297850 | 0.811954 | 5.406626e-51 | -8.615850e-47 |
| Msa1071230 | Msa1304790 | 0.812948 | 3.278394e-51 | -8.615850e-47 |
| Msa1071230 | Msa1313720 | 0.801806 | 7.568222e-49 | -8.615850e-47 |
| Msa1071230 | Msa1321010 | 0.804316 | 2.290050e-49 | -8.615850e-47 |
| Msa1071230 | Msa1322500 | 0.810568 | 1.080358e-50 | -8.615850e-47 |
| Msa1071230 | Msa1328430 | 0.830037 | 3.678719e-55 | -8.615850e-47 |
| Msa1071230 | Msa1340440 | 0.868610 | 5.743539e-66 | -8.615850e-47 |
| Msa1071230 | Msa1342360 | -0.808020 | 3.802567e-50 | -8.615850e-47 |
| Msa1071230 | Msa1361980 | 0.826479 | 2.652172e-54 | -8.615850e-47 |
| Msa1071230 | Msa1364190 | 0.804025 | 2.633238e-49 | -8.615850e-47 |
| Msa1071230 | Msa1364970 | 0.837670 | 4.531765e-57 | -8.615850e-47 |
| Msa1071230 | Msa1366480 | 0.806390 | 8.419600e-50 | -8.615850e-47 |
| Msa1071230 | Msa1367460 | 0.828467 | 8.845271e-55 | -8.615850e-47 |
| Msa1071230 | Msa1368400 | 0.820929 | 5.289481e-53 | -8.615850e-47 |
| Msa1071230 | Msa1377980 | -0.817703 | 2.873285e-52 | -8.615850e-47 |
| Msa1071230 | Msa1380740 | 0.805692 | 1.180485e-49 | -8.615850e-47 |
| Msa1071230 | Msa1380790 | 0.821847 | 3.248186e-53 | -8.615850e-47 |
| Msa1071230 | Msa1402300 | 0.818854 | 1.577400e-52 | -8.615850e-47 |
| Msa1071230 | Msa1408280 | -0.816201 | 6.248110e-52 | -8.615850e-47 |
| Msa1071230 | Msa1408860 | -0.801760 | 7.735560e-49 | -8.615850e-47 |
| Msa1071230 | Msa1412410 | 0.800030 | 1.744723e-48 | -8.615850e-47 |
| Msa1071230 | Msa1413150 | 0.847581 | 1.056337e-59 | -8.615850e-47 |
| Msa1071230 | Msa1417600 | 0.837978 | 3.777941e-57 | -8.615850e-47 |
| Msa1071230 | Msa1427860 | 0.809670 | 1.687229e-50 | -8.615850e-47 |
| Msa1071230 | Msa1429470 | 0.848210 | 7.084629e-60 | -8.615850e-47 |
| Msa1071230 | Msa1435550 | 0.835993 | 1.214262e-56 | -8.615850e-47 |
| Msa1071230 | Msa1459920 | 0.817775 | 2.768395e-52 | -8.615850e-47 |
| Msa1071230 | Msa1464140 | 0.800256 | 1.569675e-48 | -8.615850e-47 |
| Msa0242720 | Msa1071230 | 0.809726 | 1.641095e-50 | -8.615850e-47 |
| Msa0242830 | Msa1071230 | 0.803727 | 3.035895e-49 | -8.615850e-47 |
| Msa0248320 | Msa1071230 | 0.819750 | 9.856274e-53 | -8.615850e-47 |
| Msa0253450 | Msa1071230 | 0.806432 | 8.250516e-50 | -8.615850e-47 |
| Msa0270730 | Msa1071230 | -0.804214 | 2.405512e-49 | -8.615850e-47 |
| Msa0281190 | Msa1071230 | 0.805713 | 1.168983e-49 | -8.615850e-47 |
| Msa0284730 | Msa1071230 | 0.801733 | 7.833361e-49 | -8.615850e-47 |
| Msa0285420 | Msa1071230 | 0.802906 | 4.491269e-49 | -8.615850e-47 |
| Msa0303900 | Msa1071230 | 0.834362 | 3.132510e-56 | -8.615850e-47 |
| Msa0308750 | Msa1071230 | 0.803258 | 3.798978e-49 | -8.615850e-47 |
| Msa0316740 | Msa1071230 | 0.808229 | 3.431209e-50 | -8.615850e-47 |
| Msa0324810 | Msa1071230 | 0.806393 | 8.407998e-50 | -8.615850e-47 |
| Msa0328870 | Msa1071230 | 0.812023 | 5.223082e-51 | -8.615850e-47 |
| Msa0333770 | Msa1071230 | 0.837124 | 6.255212e-57 | -8.615850e-47 |
| Msa0340270 | Msa1071230 | 0.813186 | 2.907018e-51 | -8.615850e-47 |
| Msa0340370 | Msa1071230 | 0.801527 | 8.635392e-49 | -8.615850e-47 |
| Msa0345050 | Msa1071230 | 0.803930 | 2.755955e-49 | -8.615850e-47 |
| Msa0354600 | Msa1071230 | 0.800928 | 1.144696e-48 | -8.615850e-47 |
| Msa0358470 | Msa1071230 | 0.810713 | 1.005429e-50 | -8.615850e-47 |
| Msa0364030 | Msa1071230 | -0.812205 | 4.767226e-51 | -8.615850e-47 |
| Msa0497680 | Msa1071230 | 0.802856 | 4.600141e-49 | -8.615850e-47 |
| Msa0497860 | Msa1071230 | 0.801181 | 1.016489e-48 | -8.615850e-47 |
| Msa0504700 | Msa1071230 | 0.802354 | 5.837997e-49 | -8.615850e-47 |
| Msa0518490 | Msa1071230 | 0.807518 | 4.860614e-50 | -8.615850e-47 |
| Msa0524260 | Msa1071230 | 0.833507 | 5.125404e-56 | -8.615850e-47 |
| Msa0524370 | Msa1071230 | 0.831030 | 2.102695e-55 | -8.615850e-47 |
| Msa0531050 | Msa1071230 | 0.828519 | 8.594837e-55 | -8.615850e-47 |
| Msa0535570 | Msa1071230 | 0.807754 | 4.331481e-50 | -8.615850e-47 |
| Msa0556270 | Msa1071230 | 0.800965 | 1.125103e-48 | -8.615850e-47 |
| Msa0565180 | Msa1071230 | 0.834603 | 2.724342e-56 | -8.615850e-47 |
| Msa0572730 | Msa1071230 | -0.816712 | 4.800883e-52 | -8.615850e-47 |
| Msa0583270 | Msa1071230 | -0.801356 | 9.357148e-49 | -8.615850e-47 |
| Msa0583390 | Msa1071230 | 0.800437 | 1.441911e-48 | -8.615850e-47 |
| Msa0595530 | Msa1071230 | 0.805612 | 1.227523e-49 | -8.615850e-47 |
| Msa0861730 | Msa1071230 | 0.811871 | 5.636608e-51 | -8.615850e-47 |
| Msa0873880 | Msa1071230 | 0.843291 | 1.533454e-58 | -8.615850e-47 |
| Msa0873910 | Msa1071230 | 0.816043 | 6.777445e-52 | -8.615850e-47 |
| Msa0873940 | Msa1071230 | 0.828094 | 1.088390e-54 | -8.615850e-47 |
| Msa0903020 | Msa1071230 | 0.802084 | 6.636386e-49 | -8.615850e-47 |
| Msa0906660 | Msa1071230 | 0.804830 | 1.789346e-49 | -8.615850e-47 |
| Msa0906680 | Msa1071230 | 0.845275 | 4.494839e-59 | -8.615850e-47 |
| Msa0921790 | Msa1071230 | 0.807257 | 5.520938e-50 | -8.615850e-47 |
| Msa0946010 | Msa1071230 | 0.805239 | 1.469237e-49 | -8.615850e-47 |
| Msa0975950 | Msa1071230 | 0.823977 | 1.035894e-53 | -8.615850e-47 |
| Msa0975960 | Msa1071230 | 0.820398 | 7.006402e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071230 | MtrunA17_Chr5g0394431 | 80.986 | 142 | 25 | 1 | 10 | 149 | 1 | 142 | 8.68e-82 | 243 |
| Msa1071230 | MtrunA17_Chr1g0205501 | 77.143 | 140 | 29 | 2 | 10 | 147 | 1 | 139 | 1.22e-75 | 227 |
| Msa1071230 | MtrunA17_Chr2g0330031 | 51.064 | 141 | 66 | 3 | 8 | 147 | 44 | 182 | 2.20e-37 | 131 |
| Msa1071230 | MtrunA17_Chr5g0394461 | 92.453 | 53 | 3 | 1 | 1 | 52 | 1 | 53 | 6.47e-27 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071230 | AT4G14930.2 | 68.148 | 135 | 42 | 1 | 13 | 147 | 11 | 144 | 7.92e-62 | 192 |
| Msa1071230 | AT4G14930.1 | 68.148 | 135 | 42 | 1 | 13 | 147 | 11 | 144 | 1.06e-61 | 192 |
| Msa1071230 | AT1G72880.2 | 54.962 | 131 | 57 | 2 | 18 | 147 | 63 | 192 | 2.82e-40 | 139 |
| Msa1071230 | AT1G72880.1 | 54.962 | 131 | 57 | 2 | 18 | 147 | 63 | 192 | 2.82e-40 | 139 |
Find 38 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCTTCCTTTGCGGTTTC+TGG | 0.080018 | 7_2:+67677381 | Msa1071230:CDS |
| GGTAGTCAGTGGCATAAATA+AGG | 0.269395 | 7_2:+67677549 | Msa1071230:CDS |
| TTAACTTGTTTGACAGCAAC+AGG | 0.330194 | 7_2:-67677345 | None:intergenic |
| TGCTCCTGGTTTGAGAGCTT+TGG | 0.342858 | 7_2:+67676939 | Msa1071230:CDS |
| GTCAAACAAGTTAACATTCA+TGG | 0.358879 | 7_2:+67677354 | Msa1071230:CDS |
| GAGAGCTTTGGTTGAATCCC+TGG | 0.400114 | 7_2:+67676951 | Msa1071230:CDS |
| AATATACCAGTCATATGAAA+TGG | 0.404590 | 7_2:-67677999 | None:intergenic |
| TGGAACCGTTGCTTCCTTTG+CGG | 0.426141 | 7_2:+67677374 | Msa1071230:CDS |
| ACCTGGTTTACTTACCAATC+AGG | 0.428530 | 7_2:-67677009 | None:intergenic |
| CAATCTCCATTTCATATGAC+TGG | 0.460076 | 7_2:+67677993 | Msa1071230:CDS |
| ATTTCCTACAACACCTGATC+TGG | 0.463342 | 7_2:+67677528 | Msa1071230:CDS |
| ACTACCAGATCAGGTGTTGT+AGG | 0.466354 | 7_2:-67677532 | None:intergenic |
| GTTTACTCAGGCACTGTAGC+TGG | 0.466587 | 7_2:+67677938 | Msa1071230:CDS |
| TCTTAGTCTGTGCTCCTGAT+TGG | 0.486695 | 7_2:+67676995 | Msa1071230:CDS |
| GTAGTCAGTGGCATAAATAA+GGG | 0.514796 | 7_2:+67677550 | Msa1071230:CDS |
| CCGGCTGATTGCACTTCTCT+CGG | 0.516037 | 7_2:+67677490 | Msa1071230:CDS |
| CCGTTAGCCATTGTGTGACA+TGG | 0.521413 | 7_2:+67677316 | Msa1071230:CDS |
| TCAAAAGTTGTTGTATCACT+TGG | 0.528810 | 7_2:-67676862 | None:intergenic |
| GAGATGGATGAGGGTAAGCT+AGG | 0.530939 | 7_2:+67676883 | Msa1071230:CDS |
| TCATATGAAATGGAGATTGA+AGG | 0.532405 | 7_2:-67677989 | None:intergenic |
| TTTCTTCTTTGCAGGTACTC+CGG | 0.534209 | 7_2:+67677471 | Msa1071230:intron |
| TGAAGGGATATCATTAAAGA+AGG | 0.534821 | 7_2:-67677972 | None:intergenic |
| CATATGAAATGGAGATTGAA+GGG | 0.535556 | 7_2:-67677988 | None:intergenic |
| CACTGTAGCTGGAGCTCGAG+AGG | 0.542909 | 7_2:+67677949 | Msa1071230:CDS |
| ATTCTGATAACAAACGATGA+TGG | 0.543399 | 7_2:+67676910 | Msa1071230:CDS |
| TTCCCTTTCAGTGTTTACTC+AGG | 0.543522 | 7_2:+67677926 | Msa1071230:intron |
| ATGCCACTGACTACCAGATC+AGG | 0.544823 | 7_2:-67677541 | None:intergenic |
| TGTTGTAGGAAATAGTGCTC+TGG | 0.558048 | 7_2:-67677518 | None:intergenic |
| CCGAGAGAAGTGCAATCAGC+CGG | 0.562865 | 7_2:-67677490 | None:intergenic |
| TCAACCAAAGCTCTCAAACC+AGG | 0.570986 | 7_2:-67676943 | None:intergenic |
| GATGATGGTATCGATGCTCC+TGG | 0.590611 | 7_2:+67676925 | Msa1071230:CDS |
| CCATGTCACACAATGGCTAA+CGG | 0.601876 | 7_2:-67677316 | None:intergenic |
| ATAAATAAGGGTAGCAACTG+CGG | 0.609893 | 7_2:+67677562 | Msa1071230:CDS |
| AGAAACCGCAAAGGAAGCAA+CGG | 0.646643 | 7_2:-67677379 | None:intergenic |
| ACACCTGATCTGGTAGTCAG+TGG | 0.675568 | 7_2:+67677538 | Msa1071230:CDS |
| GGTGAAGCCATGTCACACAA+TGG | 0.678364 | 7_2:-67677323 | None:intergenic |
| TAACTTGTTTGACAGCAACA+GGG | 0.679661 | 7_2:-67677344 | None:intergenic |
| CAACTAACCAGAAACCGCAA+AGG | 0.682214 | 7_2:-67677388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTTAAACTAATATAAA+GGG | - | chr7_2:67677207-67677226 | None:intergenic | 10.0% |
| !!! | TGTATTTTAAACTAATATAA+AGG | - | chr7_2:67677208-67677227 | None:intergenic | 10.0% |
| !!! | GTATTTTAAACTAATATAAA+GGG | - | chr7_2:67677207-67677226 | None:intergenic | 10.0% |
| !!! | TGTATTTTAAACTAATATAA+AGG | - | chr7_2:67677208-67677227 | None:intergenic | 10.0% |
| !!! | TCTTTTTGTTAAAGTTATTT+CGG | + | chr7_2:67677853-67677872 | Msa1071230:intron | 15.0% |
| !!! | TCTTTTTGTTAAAGTTATTT+CGG | + | chr7_2:67677853-67677872 | Msa1071230:intron | 15.0% |
| !! | ATTCTTTAATCTCAATCAAA+CGG | - | chr7_2:67677075-67677094 | None:intergenic | 20.0% |
| !! | TTTATTATATGACATGTAGA+CGG | + | chr7_2:67677237-67677256 | Msa1071230:intron | 20.0% |
| !!! | TCAATAGAAAAATTTTCAAC+AGG | - | chr7_2:67677733-67677752 | None:intergenic | 20.0% |
| !! | ATATTCAGTAAATCATAAGA+GGG | - | chr7_2:67677832-67677851 | None:intergenic | 20.0% |
| !! | AATATTCAGTAAATCATAAG+AGG | - | chr7_2:67677833-67677852 | None:intergenic | 20.0% |
| !! | ATTCTTTAATCTCAATCAAA+CGG | - | chr7_2:67677075-67677094 | None:intergenic | 20.0% |
| !! | TTTATTATATGACATGTAGA+CGG | + | chr7_2:67677237-67677256 | Msa1071230:intron | 20.0% |
| !!! | TCAATAGAAAAATTTTCAAC+AGG | - | chr7_2:67677733-67677752 | None:intergenic | 20.0% |
| !! | ATATTCAGTAAATCATAAGA+GGG | - | chr7_2:67677832-67677851 | None:intergenic | 20.0% |
| !! | AATATTCAGTAAATCATAAG+AGG | - | chr7_2:67677833-67677852 | None:intergenic | 20.0% |
| ! | GACTAAGACATTAAAAAGAT+TGG | - | chr7_2:67676983-67677002 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTCATAGCAAA+TGG | + | chr7_2:67677682-67677701 | Msa1071230:intron | 25.0% |
| ! | CATTTCAAATTTCAAGGAAA+TGG | - | chr7_2:67677808-67677827 | None:intergenic | 25.0% |
| ! | AATATACCAGTCATATGAAA+TGG | - | chr7_2:67678002-67678021 | None:intergenic | 25.0% |
| ! | GACTAAGACATTAAAAAGAT+TGG | - | chr7_2:67676983-67677002 | None:intergenic | 25.0% |
| !! | ATTTTGCATTTCATAGCAAA+TGG | + | chr7_2:67677682-67677701 | Msa1071230:intron | 25.0% |
| ! | CATTTCAAATTTCAAGGAAA+TGG | - | chr7_2:67677808-67677827 | None:intergenic | 25.0% |
| ! | AATATACCAGTCATATGAAA+TGG | - | chr7_2:67678002-67678021 | None:intergenic | 25.0% |
| TCAAAAGTTGTTGTATCACT+TGG | - | chr7_2:67676865-67676884 | None:intergenic | 30.0% | |
| !! | TGATACAACAACTTTTGAGA+TGG | + | chr7_2:67676867-67676886 | Msa1071230:CDS | 30.0% |
| ATTCTGATAACAAACGATGA+TGG | + | chr7_2:67676910-67676929 | Msa1071230:CDS | 30.0% | |
| CTATATGAATTTGATCACCA+CGG | - | chr7_2:67677036-67677055 | None:intergenic | 30.0% | |
| TCTATATGATCTTGATCCAA+CGG | + | chr7_2:67677107-67677126 | Msa1071230:intron | 30.0% | |
| GATGTGAATTCTTTCATGTT+TGG | + | chr7_2:67677135-67677154 | Msa1071230:intron | 30.0% | |
| !!! | CTTGCAACAATTTTTGAAAC+AGG | - | chr7_2:67677174-67677193 | None:intergenic | 30.0% |
| GTCAAACAAGTTAACATTCA+TGG | + | chr7_2:67677354-67677373 | Msa1071230:CDS | 30.0% | |
| TGAGCTTATGAAAATGGAAA+TGG | - | chr7_2:67677429-67677448 | None:intergenic | 30.0% | |
| TGCTTAAAGTCTAAAAAAGG+CGG | - | chr7_2:67677627-67677646 | None:intergenic | 30.0% | |
| CACTGCTTAAAGTCTAAAAA+AGG | - | chr7_2:67677630-67677649 | None:intergenic | 30.0% | |
| TGAAGGGATATCATTAAAGA+AGG | - | chr7_2:67677975-67677994 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATTGAA+GGG | - | chr7_2:67677991-67678010 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATTGA+AGG | - | chr7_2:67677992-67678011 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACATGCTTCTG+TGG | + | chr7_2:67678017-67678036 | Msa1071230:intron | 30.0% |
| TCAAAAGTTGTTGTATCACT+TGG | - | chr7_2:67676865-67676884 | None:intergenic | 30.0% | |
| !! | TGATACAACAACTTTTGAGA+TGG | + | chr7_2:67676867-67676886 | Msa1071230:CDS | 30.0% |
| ATTCTGATAACAAACGATGA+TGG | + | chr7_2:67676910-67676929 | Msa1071230:CDS | 30.0% | |
| CTATATGAATTTGATCACCA+CGG | - | chr7_2:67677036-67677055 | None:intergenic | 30.0% | |
| TCTATATGATCTTGATCCAA+CGG | + | chr7_2:67677107-67677126 | Msa1071230:intron | 30.0% | |
| GATGTGAATTCTTTCATGTT+TGG | + | chr7_2:67677135-67677154 | Msa1071230:intron | 30.0% | |
| !!! | CTTGCAACAATTTTTGAAAC+AGG | - | chr7_2:67677174-67677193 | None:intergenic | 30.0% |
| GTCAAACAAGTTAACATTCA+TGG | + | chr7_2:67677354-67677373 | Msa1071230:CDS | 30.0% | |
| TGAGCTTATGAAAATGGAAA+TGG | - | chr7_2:67677429-67677448 | None:intergenic | 30.0% | |
| TGCTTAAAGTCTAAAAAAGG+CGG | - | chr7_2:67677627-67677646 | None:intergenic | 30.0% | |
| CACTGCTTAAAGTCTAAAAA+AGG | - | chr7_2:67677630-67677649 | None:intergenic | 30.0% | |
| TGAAGGGATATCATTAAAGA+AGG | - | chr7_2:67677975-67677994 | None:intergenic | 30.0% | |
| CATATGAAATGGAGATTGAA+GGG | - | chr7_2:67677991-67678010 | None:intergenic | 30.0% | |
| TCATATGAAATGGAGATTGA+AGG | - | chr7_2:67677992-67678011 | None:intergenic | 30.0% | |
| ! | ATATTTTCAACATGCTTCTG+TGG | + | chr7_2:67678017-67678036 | Msa1071230:intron | 30.0% |
| !!! | AACAACTTTTGAGATGGATG+AGG | + | chr7_2:67676873-67676892 | Msa1071230:CDS | 35.0% |
| !!! | ACAACTTTTGAGATGGATGA+GGG | + | chr7_2:67676874-67676893 | Msa1071230:CDS | 35.0% |
| !! | AAAAAGATTGGTGTTGACCA+GGG | - | chr7_2:67676971-67676990 | None:intergenic | 35.0% |
| !! | TAAAAAGATTGGTGTTGACC+AGG | - | chr7_2:67676972-67676991 | None:intergenic | 35.0% |
| !! | TAACTTGTTTGACAGCAACA+GGG | - | chr7_2:67677347-67677366 | None:intergenic | 35.0% |
| !! | TTAACTTGTTTGACAGCAAC+AGG | - | chr7_2:67677348-67677367 | None:intergenic | 35.0% |
| TGAGCTTGAGCTTATGAAAA+TGG | - | chr7_2:67677435-67677454 | None:intergenic | 35.0% | |
| !! | CGACTATTTTTCTTCTTTGC+AGG | + | chr7_2:67677463-67677482 | Msa1071230:intron | 35.0% |
| GTAGTCAGTGGCATAAATAA+GGG | + | chr7_2:67677550-67677569 | Msa1071230:CDS | 35.0% | |
| ATAAATAAGGGTAGCAACTG+CGG | + | chr7_2:67677562-67677581 | Msa1071230:CDS | 35.0% | |
| CTTAAAGTCTAAAAAAGGCG+GGG | - | chr7_2:67677625-67677644 | None:intergenic | 35.0% | |
| GCTTAAAGTCTAAAAAAGGC+GGG | - | chr7_2:67677626-67677645 | None:intergenic | 35.0% | |
| GAGGGTCATTTCAAATTTCA+AGG | - | chr7_2:67677814-67677833 | None:intergenic | 35.0% | |
| TAGACAGAACAGAACAACTA+TGG | - | chr7_2:67677905-67677924 | None:intergenic | 35.0% | |
| CAATCTCCATTTCATATGAC+TGG | + | chr7_2:67677993-67678012 | Msa1071230:CDS | 35.0% | |
| !!! | AACAACTTTTGAGATGGATG+AGG | + | chr7_2:67676873-67676892 | Msa1071230:CDS | 35.0% |
| !!! | ACAACTTTTGAGATGGATGA+GGG | + | chr7_2:67676874-67676893 | Msa1071230:CDS | 35.0% |
| !! | AAAAAGATTGGTGTTGACCA+GGG | - | chr7_2:67676971-67676990 | None:intergenic | 35.0% |
| !! | TAAAAAGATTGGTGTTGACC+AGG | - | chr7_2:67676972-67676991 | None:intergenic | 35.0% |
| !! | TAACTTGTTTGACAGCAACA+GGG | - | chr7_2:67677347-67677366 | None:intergenic | 35.0% |
| !! | TTAACTTGTTTGACAGCAAC+AGG | - | chr7_2:67677348-67677367 | None:intergenic | 35.0% |
| TGAGCTTGAGCTTATGAAAA+TGG | - | chr7_2:67677435-67677454 | None:intergenic | 35.0% | |
| !! | CGACTATTTTTCTTCTTTGC+AGG | + | chr7_2:67677463-67677482 | Msa1071230:intron | 35.0% |
| GTAGTCAGTGGCATAAATAA+GGG | + | chr7_2:67677550-67677569 | Msa1071230:CDS | 35.0% | |
| ATAAATAAGGGTAGCAACTG+CGG | + | chr7_2:67677562-67677581 | Msa1071230:CDS | 35.0% | |
| CTTAAAGTCTAAAAAAGGCG+GGG | - | chr7_2:67677625-67677644 | None:intergenic | 35.0% | |
| GCTTAAAGTCTAAAAAAGGC+GGG | - | chr7_2:67677626-67677645 | None:intergenic | 35.0% | |
| GAGGGTCATTTCAAATTTCA+AGG | - | chr7_2:67677814-67677833 | None:intergenic | 35.0% | |
| TAGACAGAACAGAACAACTA+TGG | - | chr7_2:67677905-67677924 | None:intergenic | 35.0% | |
| CAATCTCCATTTCATATGAC+TGG | + | chr7_2:67677993-67678012 | Msa1071230:CDS | 35.0% | |
| TCCTGATTGGTAAGTAAACC+AGG | + | chr7_2:67677008-67677027 | Msa1071230:intron | 40.0% | |
| ACCTGGTTTACTTACCAATC+AGG | - | chr7_2:67677012-67677031 | None:intergenic | 40.0% | |
| GAATTCACATCAATGACCGT+TGG | - | chr7_2:67677126-67677145 | None:intergenic | 40.0% | |
| TTTCTTCTTTGCAGGTACTC+CGG | + | chr7_2:67677471-67677490 | Msa1071230:intron | 40.0% | |
| TGTTGTAGGAAATAGTGCTC+TGG | - | chr7_2:67677521-67677540 | None:intergenic | 40.0% | |
| ATTTCCTACAACACCTGATC+TGG | + | chr7_2:67677528-67677547 | Msa1071230:CDS | 40.0% | |
| GGTAGTCAGTGGCATAAATA+AGG | + | chr7_2:67677549-67677568 | Msa1071230:CDS | 40.0% | |
| TCGTCATCTGTTCATAGCTT+AGG | - | chr7_2:67677780-67677799 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | + | chr7_2:67677926-67677945 | Msa1071230:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | - | chr7_2:67677931-67677950 | None:intergenic | 40.0% | |
| TCCTGATTGGTAAGTAAACC+AGG | + | chr7_2:67677008-67677027 | Msa1071230:intron | 40.0% | |
| ACCTGGTTTACTTACCAATC+AGG | - | chr7_2:67677012-67677031 | None:intergenic | 40.0% | |
| GAATTCACATCAATGACCGT+TGG | - | chr7_2:67677126-67677145 | None:intergenic | 40.0% | |
| TTTCTTCTTTGCAGGTACTC+CGG | + | chr7_2:67677471-67677490 | Msa1071230:intron | 40.0% | |
| TGTTGTAGGAAATAGTGCTC+TGG | - | chr7_2:67677521-67677540 | None:intergenic | 40.0% | |
| ATTTCCTACAACACCTGATC+TGG | + | chr7_2:67677528-67677547 | Msa1071230:CDS | 40.0% | |
| GGTAGTCAGTGGCATAAATA+AGG | + | chr7_2:67677549-67677568 | Msa1071230:CDS | 40.0% | |
| TCGTCATCTGTTCATAGCTT+AGG | - | chr7_2:67677780-67677799 | None:intergenic | 40.0% | |
| TTCCCTTTCAGTGTTTACTC+AGG | + | chr7_2:67677926-67677945 | Msa1071230:intron | 40.0% | |
| TGCCTGAGTAAACACTGAAA+GGG | - | chr7_2:67677931-67677950 | None:intergenic | 40.0% | |
| TCAACCAAAGCTCTCAAACC+AGG | - | chr7_2:67676946-67676965 | None:intergenic | 45.0% | |
| TCTTAGTCTGTGCTCCTGAT+TGG | + | chr7_2:67676995-67677014 | Msa1071230:CDS | 45.0% | |
| AATTTGATCACCACGGAACC+TGG | - | chr7_2:67677029-67677048 | None:intergenic | 45.0% | |
| CCATGTCACACAATGGCTAA+CGG | - | chr7_2:67677319-67677338 | None:intergenic | 45.0% | |
| AGAAACCGCAAAGGAAGCAA+CGG | - | chr7_2:67677382-67677401 | None:intergenic | 45.0% | |
| CAACTAACCAGAAACCGCAA+AGG | - | chr7_2:67677391-67677410 | None:intergenic | 45.0% | |
| !! | CTTTGCGGTTTCTGGTTAGT+TGG | + | chr7_2:67677389-67677408 | Msa1071230:intron | 45.0% |
| ! | ACTACCAGATCAGGTGTTGT+AGG | - | chr7_2:67677535-67677554 | None:intergenic | 45.0% |
| GTGCCTGAGTAAACACTGAA+AGG | - | chr7_2:67677932-67677951 | None:intergenic | 45.0% | |
| TCAACCAAAGCTCTCAAACC+AGG | - | chr7_2:67676946-67676965 | None:intergenic | 45.0% | |
| TCTTAGTCTGTGCTCCTGAT+TGG | + | chr7_2:67676995-67677014 | Msa1071230:CDS | 45.0% | |
| AATTTGATCACCACGGAACC+TGG | - | chr7_2:67677029-67677048 | None:intergenic | 45.0% | |
| CCATGTCACACAATGGCTAA+CGG | - | chr7_2:67677319-67677338 | None:intergenic | 45.0% | |
| AGAAACCGCAAAGGAAGCAA+CGG | - | chr7_2:67677382-67677401 | None:intergenic | 45.0% | |
| CAACTAACCAGAAACCGCAA+AGG | - | chr7_2:67677391-67677410 | None:intergenic | 45.0% | |
| !! | CTTTGCGGTTTCTGGTTAGT+TGG | + | chr7_2:67677389-67677408 | Msa1071230:intron | 45.0% |
| ! | ACTACCAGATCAGGTGTTGT+AGG | - | chr7_2:67677535-67677554 | None:intergenic | 45.0% |
| GTGCCTGAGTAAACACTGAA+AGG | - | chr7_2:67677932-67677951 | None:intergenic | 45.0% | |
| GAGATGGATGAGGGTAAGCT+AGG | + | chr7_2:67676883-67676902 | Msa1071230:CDS | 50.0% | |
| !! | GATGATGGTATCGATGCTCC+TGG | + | chr7_2:67676925-67676944 | Msa1071230:CDS | 50.0% |
| ! | TGCTCCTGGTTTGAGAGCTT+TGG | + | chr7_2:67676939-67676958 | Msa1071230:CDS | 50.0% |
| ! | GAGAGCTTTGGTTGAATCCC+TGG | + | chr7_2:67676951-67676970 | Msa1071230:CDS | 50.0% |
| GGTAAGTAAACCAGGTTCCG+TGG | + | chr7_2:67677016-67677035 | Msa1071230:intron | 50.0% | |
| CCGTTAGCCATTGTGTGACA+TGG | + | chr7_2:67677316-67677335 | Msa1071230:CDS | 50.0% | |
| GGTGAAGCCATGTCACACAA+TGG | - | chr7_2:67677326-67677345 | None:intergenic | 50.0% | |
| TGGAACCGTTGCTTCCTTTG+CGG | + | chr7_2:67677374-67677393 | Msa1071230:CDS | 50.0% | |
| GTTGCTTCCTTTGCGGTTTC+TGG | + | chr7_2:67677381-67677400 | Msa1071230:CDS | 50.0% | |
| ACACCTGATCTGGTAGTCAG+TGG | + | chr7_2:67677538-67677557 | Msa1071230:CDS | 50.0% | |
| ! | ATGCCACTGACTACCAGATC+AGG | - | chr7_2:67677544-67677563 | None:intergenic | 50.0% |
| CTAAAAAAGGCGGGGACATG+AGG | - | chr7_2:67677617-67677636 | None:intergenic | 50.0% | |
| ! | GTTTACTCAGGCACTGTAGC+TGG | + | chr7_2:67677938-67677957 | Msa1071230:CDS | 50.0% |
| GAGATGGATGAGGGTAAGCT+AGG | + | chr7_2:67676883-67676902 | Msa1071230:CDS | 50.0% | |
| !! | GATGATGGTATCGATGCTCC+TGG | + | chr7_2:67676925-67676944 | Msa1071230:CDS | 50.0% |
| ! | TGCTCCTGGTTTGAGAGCTT+TGG | + | chr7_2:67676939-67676958 | Msa1071230:CDS | 50.0% |
| ! | GAGAGCTTTGGTTGAATCCC+TGG | + | chr7_2:67676951-67676970 | Msa1071230:CDS | 50.0% |
| GGTAAGTAAACCAGGTTCCG+TGG | + | chr7_2:67677016-67677035 | Msa1071230:intron | 50.0% | |
| CCGTTAGCCATTGTGTGACA+TGG | + | chr7_2:67677316-67677335 | Msa1071230:CDS | 50.0% | |
| GGTGAAGCCATGTCACACAA+TGG | - | chr7_2:67677326-67677345 | None:intergenic | 50.0% | |
| TGGAACCGTTGCTTCCTTTG+CGG | + | chr7_2:67677374-67677393 | Msa1071230:CDS | 50.0% | |
| GTTGCTTCCTTTGCGGTTTC+TGG | + | chr7_2:67677381-67677400 | Msa1071230:CDS | 50.0% | |
| ACACCTGATCTGGTAGTCAG+TGG | + | chr7_2:67677538-67677557 | Msa1071230:CDS | 50.0% | |
| ! | ATGCCACTGACTACCAGATC+AGG | - | chr7_2:67677544-67677563 | None:intergenic | 50.0% |
| CTAAAAAAGGCGGGGACATG+AGG | - | chr7_2:67677617-67677636 | None:intergenic | 50.0% | |
| ! | GTTTACTCAGGCACTGTAGC+TGG | + | chr7_2:67677938-67677957 | Msa1071230:CDS | 50.0% |
| ! | CCGAGAGAAGTGCAATCAGC+CGG | - | chr7_2:67677493-67677512 | None:intergenic | 55.0% |
| CCGGCTGATTGCACTTCTCT+CGG | + | chr7_2:67677490-67677509 | Msa1071230:CDS | 55.0% | |
| AAAAAGGCGGGGACATGAGG+AGG | - | chr7_2:67677614-67677633 | None:intergenic | 55.0% | |
| ! | CCGAGAGAAGTGCAATCAGC+CGG | - | chr7_2:67677493-67677512 | None:intergenic | 55.0% |
| CCGGCTGATTGCACTTCTCT+CGG | + | chr7_2:67677490-67677509 | Msa1071230:CDS | 55.0% | |
| AAAAAGGCGGGGACATGAGG+AGG | - | chr7_2:67677614-67677633 | None:intergenic | 55.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | + | chr7_2:67677949-67677968 | Msa1071230:CDS | 60.0% | |
| CACTGTAGCTGGAGCTCGAG+AGG | + | chr7_2:67677949-67677968 | Msa1071230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 67676859 | 67678107 | 67676859 | ID=Msa1071230;Name=Msa1071230 |
| chr7_2 | mRNA | 67676859 | 67678107 | 67676859 | ID=Msa1071230-mRNA-1;Parent=Msa1071230;Name=Msa1071230-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.5|0.2|0.8|1|1|5|0|149 |
| chr7_2 | exon | 67676859 | 67677016 | 67676859 | ID=Msa1071230-mRNA-1:exon:14644;Parent=Msa1071230-mRNA-1 |
| chr7_2 | exon | 67677305 | 67677402 | 67677305 | ID=Msa1071230-mRNA-1:exon:14645;Parent=Msa1071230-mRNA-1 |
| chr7_2 | exon | 67677485 | 67677593 | 67677485 | ID=Msa1071230-mRNA-1:exon:14646;Parent=Msa1071230-mRNA-1 |
| chr7_2 | exon | 67677937 | 67678014 | 67677937 | ID=Msa1071230-mRNA-1:exon:14647;Parent=Msa1071230-mRNA-1 |
| chr7_2 | exon | 67678101 | 67678107 | 67678101 | ID=Msa1071230-mRNA-1:exon:14648;Parent=Msa1071230-mRNA-1 |
| chr7_2 | CDS | 67676859 | 67677016 | 67676859 | ID=Msa1071230-mRNA-1:cds;Parent=Msa1071230-mRNA-1 |
| chr7_2 | CDS | 67677305 | 67677402 | 67677305 | ID=Msa1071230-mRNA-1:cds;Parent=Msa1071230-mRNA-1 |
| chr7_2 | CDS | 67677485 | 67677593 | 67677485 | ID=Msa1071230-mRNA-1:cds;Parent=Msa1071230-mRNA-1 |
| chr7_2 | CDS | 67677937 | 67678014 | 67677937 | ID=Msa1071230-mRNA-1:cds;Parent=Msa1071230-mRNA-1 |
| chr7_2 | CDS | 67678101 | 67678107 | 67678101 | ID=Msa1071230-mRNA-1:cds;Parent=Msa1071230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
