Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306250 | sp|Q9LP45|PSD11_ARATH | 86.024 | 415 | 57 | 1 | 16 | 430 | 6 | 419 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306250 | G7I549 | 99.525 | 421 | 2 | 0 | 10 | 430 | 1 | 421 | 0.0 | 849 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037180 | Msa1306250 | 0.851987 | 6.201210e-61 | -8.615850e-47 |
| Msa0092220 | Msa1306250 | 0.841515 | 4.535000e-58 | -8.615850e-47 |
| Msa0616580 | Msa1306250 | 0.859639 | 3.599931e-63 | -8.615850e-47 |
| Msa0620080 | Msa1306250 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0631380 | Msa1306250 | 0.822991 | 1.761170e-53 | -8.615850e-47 |
| Msa0660150 | Msa1306250 | 0.832694 | 8.167350e-56 | -8.615850e-47 |
| Msa0683840 | Msa1306250 | 0.801172 | 1.020654e-48 | -8.615850e-47 |
| Msa0695140 | Msa1306250 | 0.816292 | 5.962499e-52 | -8.615850e-47 |
| Msa0695760 | Msa1306250 | 0.804923 | 1.711241e-49 | -8.615850e-47 |
| Msa0699910 | Msa1306250 | 0.842519 | 2.461375e-58 | -8.615850e-47 |
| Msa0702690 | Msa1306250 | -0.805218 | 1.484339e-49 | -8.615850e-47 |
| Msa0721930 | Msa1306250 | 0.853620 | 2.119126e-61 | -8.615850e-47 |
| Msa0745140 | Msa1306250 | 0.803346 | 3.641811e-49 | -8.615850e-47 |
| Msa0753270 | Msa1306250 | 0.821447 | 4.019305e-53 | -8.615850e-47 |
| Msa0762930 | Msa1306250 | 0.854399 | 1.263067e-61 | -8.615850e-47 |
| Msa0776640 | Msa1306250 | 0.802118 | 6.529719e-49 | -8.615850e-47 |
| Msa0805390 | Msa1306250 | 0.819901 | 9.102510e-53 | -8.615850e-47 |
| Msa0807870 | Msa1306250 | -0.813880 | 2.045922e-51 | -8.615850e-47 |
| Msa0825920 | Msa1306250 | 0.805085 | 1.582436e-49 | -8.615850e-47 |
| Msa0832520 | Msa1306250 | 0.823372 | 1.435011e-53 | -8.615850e-47 |
| Msa0150330 | Msa1306250 | 0.810773 | 9.757158e-51 | -8.615850e-47 |
| Msa0177320 | Msa1306250 | 0.861252 | 1.169085e-63 | -8.615850e-47 |
| Msa0180100 | Msa1306250 | -0.803418 | 3.519974e-49 | -8.615850e-47 |
| Msa0192050 | Msa1306250 | 0.800353 | 1.499531e-48 | -8.615850e-47 |
| Msa0225070 | Msa1306250 | -0.820874 | 5.446989e-53 | -8.615850e-47 |
| Msa1251410 | Msa1306250 | 0.806091 | 9.731427e-50 | -8.615850e-47 |
| Msa1257570 | Msa1306250 | 0.815671 | 8.204052e-52 | -8.615850e-47 |
| Msa1300100 | Msa1306250 | 0.803627 | 3.185597e-49 | -8.615850e-47 |
| Msa1304790 | Msa1306250 | 0.827959 | 1.172456e-54 | -8.615850e-47 |
| Msa1306250 | Msa1323260 | -0.810226 | 1.280497e-50 | -8.615850e-47 |
| Msa1306250 | Msa1342360 | -0.805650 | 1.204968e-49 | -8.615850e-47 |
| Msa1306250 | Msa1343450 | -0.801746 | 7.783969e-49 | -8.615850e-47 |
| Msa1306250 | Msa1357990 | 0.818407 | 1.992379e-52 | -8.615850e-47 |
| Msa1306250 | Msa1361980 | 0.803733 | 3.027548e-49 | -8.615850e-47 |
| Msa1306250 | Msa1365820 | 0.823439 | 1.384166e-53 | -8.615850e-47 |
| Msa1306250 | Msa1368390 | 0.807386 | 5.184064e-50 | -8.615850e-47 |
| Msa1306250 | Msa1377980 | -0.813924 | 2.000657e-51 | -8.615850e-47 |
| Msa1306250 | Msa1408280 | -0.813138 | 2.978633e-51 | -8.615850e-47 |
| Msa1306250 | Msa1413150 | 0.802512 | 5.417334e-49 | -8.615850e-47 |
| Msa1306250 | Msa1429470 | 0.805421 | 1.345730e-49 | -8.615850e-47 |
| Msa1306250 | Msa1456180 | -0.801930 | 7.135790e-49 | -8.615850e-47 |
| Msa1306250 | Msa1457770 | 0.829194 | 5.900727e-55 | -8.615850e-47 |
| Msa0373550 | Msa1306250 | 0.804734 | 1.874037e-49 | -8.615850e-47 |
| Msa0386880 | Msa1306250 | 0.817491 | 3.208448e-52 | -8.615850e-47 |
| Msa0403740 | Msa1306250 | -0.806043 | 9.963039e-50 | -8.615850e-47 |
| Msa0428210 | Msa1306250 | 0.837233 | 5.866183e-57 | -8.615850e-47 |
| Msa0456450 | Msa1306250 | -0.807129 | 5.876655e-50 | -8.615850e-47 |
| Msa0457070 | Msa1306250 | -0.800401 | 1.466427e-48 | -8.615850e-47 |
| Msa0474570 | Msa1306250 | 0.845973 | 2.906395e-59 | -8.615850e-47 |
| Msa0980890 | Msa1306250 | 0.829049 | 6.398594e-55 | -8.615850e-47 |
| Msa0981670 | Msa1306250 | 0.805764 | 1.140314e-49 | -8.615850e-47 |
| Msa1052000 | Msa1306250 | 0.828129 | 1.066991e-54 | -8.615850e-47 |
| Msa1055520 | Msa1306250 | -0.802128 | 6.499371e-49 | -8.615850e-47 |
| Msa1078830 | Msa1306250 | 0.815013 | 1.148714e-51 | -8.615850e-47 |
| Msa1078890 | Msa1306250 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa1096760 | Msa1306250 | 0.815982 | 6.992836e-52 | -8.615850e-47 |
| Msa0238950 | Msa1306250 | 0.806359 | 8.545531e-50 | -8.615850e-47 |
| Msa0256540 | Msa1306250 | 0.803236 | 3.837739e-49 | -8.615850e-47 |
| Msa0262440 | Msa1306250 | 0.803055 | 4.184686e-49 | -8.615850e-47 |
| Msa0266140 | Msa1306250 | -0.815522 | 8.853701e-52 | -8.615850e-47 |
| Msa0304060 | Msa1306250 | -0.811149 | 8.086617e-51 | -8.615850e-47 |
| Msa0308750 | Msa1306250 | 0.810969 | 8.849223e-51 | -8.615850e-47 |
| Msa0316740 | Msa1306250 | 0.811894 | 5.571986e-51 | -8.615850e-47 |
| Msa0328870 | Msa1306250 | 0.803046 | 4.201903e-49 | -8.615850e-47 |
| Msa0364030 | Msa1306250 | -0.804778 | 1.834286e-49 | -8.615850e-47 |
| Msa1169660 | Msa1306250 | 0.801803 | 7.578221e-49 | -8.615850e-47 |
| Msa1192180 | Msa1306250 | 0.800921 | 1.148451e-48 | -8.615850e-47 |
| Msa1202470 | Msa1306250 | 0.809748 | 1.623419e-50 | -8.615850e-47 |
| Msa1205270 | Msa1306250 | -0.829517 | 4.923913e-55 | -8.615850e-47 |
| Msa1212830 | Msa1306250 | 0.808903 | 2.464268e-50 | -8.615850e-47 |
| Msa1213040 | Msa1306250 | 0.817947 | 2.531841e-52 | -8.615850e-47 |
| Msa0519150 | Msa1306250 | 0.817220 | 3.691891e-52 | -8.615850e-47 |
| Msa0563440 | Msa1306250 | 0.828055 | 1.111877e-54 | -8.615850e-47 |
| Msa0572730 | Msa1306250 | -0.820903 | 5.364038e-53 | -8.615850e-47 |
| Msa0842750 | Msa1306250 | 0.805754 | 1.145744e-49 | -8.615850e-47 |
| Msa0868610 | Msa1306250 | 0.834156 | 3.527497e-56 | -8.615850e-47 |
| Msa0931550 | Msa1306250 | -0.809190 | 2.138946e-50 | -8.615850e-47 |
| Msa0967900 | Msa1306250 | -0.812130 | 4.948836e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306250 | MtrunA17_Chr1g0147501 | 99.525 | 421 | 2 | 0 | 10 | 430 | 1 | 421 | 0.0 | 849 |
| Msa1306250 | MtrunA17_Chr3g0139291 | 92.840 | 419 | 30 | 0 | 11 | 429 | 3 | 421 | 0.0 | 767 |
| Msa1306250 | MtrunA17_Chr7g0254661 | 23.952 | 334 | 235 | 6 | 64 | 387 | 76 | 400 | 1.64e-20 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1306250 | AT1G29150.2 | 86.024 | 415 | 57 | 1 | 16 | 430 | 6 | 419 | 0.0 | 702 |
| Msa1306250 | AT1G29150.1 | 86.024 | 415 | 57 | 1 | 16 | 430 | 6 | 419 | 0.0 | 702 |
| Msa1306250 | AT2G26990.1 | 22.756 | 312 | 225 | 6 | 86 | 387 | 95 | 400 | 7.16e-16 | 79.7 |
Find 94 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATAATTTCAGGGATCTTT+TGG | 0.192366 | 8_4:-1042927 | None:intergenic |
| AAGCAGTTTCAAATAATTTC+AGG | 0.248613 | 8_4:-1042937 | None:intergenic |
| TACACAGCAACATGTATTTC+AGG | 0.261616 | 8_4:-1042793 | None:intergenic |
| GCAATATCTTGGACCTGATT+TGG | 0.308447 | 8_4:+1042874 | Msa1306250:CDS |
| ATATTGCAGGCCTGCTTTAG+AGG | 0.337336 | 8_4:-1042858 | None:intergenic |
| TCTTTCATGCGCAGAGCATC+AGG | 0.340066 | 8_4:-1042164 | None:intergenic |
| TTCAGGCTAAAGACGGCTTT+GGG | 0.358755 | 8_4:-1042776 | None:intergenic |
| CAAGAAGTTCGCTGGGACAT+TGG | 0.366159 | 8_4:+1043156 | Msa1306250:CDS |
| GCTTTCATTGCATCCAAATC+AGG | 0.369042 | 8_4:-1042887 | None:intergenic |
| TAGAAACCATTTCTAATGTT+GGG | 0.370156 | 8_4:+1043245 | Msa1306250:CDS |
| GAAATGGTTTCTAAAGTTGC+AGG | 0.374373 | 8_4:-1043235 | None:intergenic |
| TTTCAGGCTAAAGACGGCTT+TGG | 0.375816 | 8_4:-1042777 | None:intergenic |
| CAAGCTTTGACTCTCCTTAG+TGG | 0.388037 | 8_4:+1042479 | Msa1306250:CDS |
| GACTTTCCCAACATTAGAAA+TGG | 0.391872 | 8_4:-1043251 | None:intergenic |
| CCTTCTCAGGCAAGAGAATA+GGG | 0.395870 | 8_4:+1042211 | Msa1306250:CDS |
| AATCCCACTCTGCAAATCTA+TGG | 0.395909 | 8_4:-1042672 | None:intergenic |
| CTTTCGCTCCACGTGATCAA+TGG | 0.400421 | 8_4:-1043113 | None:intergenic |
| CGAGACTTCAAGGCACAGTT+GGG | 0.400670 | 8_4:+1042962 | Msa1306250:CDS |
| TTTGACTCTCCTTAGTGGCT+TGG | 0.409710 | 8_4:+1042484 | Msa1306250:CDS |
| AACTGCTTTACGAGACTTCA+AGG | 0.415681 | 8_4:+1042952 | Msa1306250:CDS |
| TACTCTTCTGATGGAAAGTA+AGG | 0.419643 | 8_4:+1042448 | Msa1306250:CDS |
| CAAACCTCACCGACCTTCTC+AGG | 0.419854 | 8_4:+1042198 | Msa1306250:CDS |
| ATCCCTGTATGATACCCTTC+TGG | 0.426885 | 8_4:+1043015 | Msa1306250:CDS |
| AAAGCAGGCCTGCAATATCT+TGG | 0.428220 | 8_4:+1042863 | Msa1306250:CDS |
| TCCATTCTTTATCGTGTACT+TGG | 0.428345 | 8_4:+1042125 | Msa1306250:CDS |
| GCTTGGTCAAAGAGGTTAGA+AGG | 0.428699 | 8_4:+1042501 | Msa1306250:CDS |
| TTAGAAACCATTTCTAATGT+TGG | 0.430658 | 8_4:+1043244 | Msa1306250:CDS |
| ACCTTCTCAGGCAAGAGAAT+AGG | 0.449371 | 8_4:+1042210 | Msa1306250:CDS |
| GTCTATTGCTCAGGCATTGG+AGG | 0.453941 | 8_4:+1042079 | Msa1306250:CDS |
| GAGATCTCATGTCATTATCT+TGG | 0.457490 | 8_4:-1043299 | None:intergenic |
| AGCAGTTTCAAATAATTTCA+GGG | 0.458625 | 8_4:-1042936 | None:intergenic |
| AATTTCACTATGCAAAGAAA+TGG | 0.464269 | 8_4:+1042364 | Msa1306250:CDS |
| AGCTGTTCTTGCAGCTGTGA+GGG | 0.469625 | 8_4:-1042612 | None:intergenic |
| GCAATTTCAACCCTTGAGAA+TGG | 0.470337 | 8_4:-1043064 | None:intergenic |
| CCTCTTTGACCAAGCCACTA+AGG | 0.474592 | 8_4:-1042493 | None:intergenic |
| GCTCCAGAAGGGTATCATAC+AGG | 0.475823 | 8_4:-1043018 | None:intergenic |
| TTTCGCTCCACGTGATCAAT+GGG | 0.485219 | 8_4:-1043112 | None:intergenic |
| AATCAGGTCCAAGATATTGC+AGG | 0.487957 | 8_4:-1042871 | None:intergenic |
| GATTCTGTTGCTAAAATACC+AGG | 0.490110 | 8_4:+1042326 | Msa1306250:CDS |
| GGGATGATCCAATCGTTCAT+AGG | 0.490676 | 8_4:+1042984 | Msa1306250:CDS |
| TGCTCTGCGCATGAAAGAGC+AGG | 0.492288 | 8_4:+1042169 | Msa1306250:CDS |
| CCCTATTCTCTTGCCTGAGA+AGG | 0.492528 | 8_4:-1042211 | None:intergenic |
| CACAACAGAGTCTATTGCTC+AGG | 0.495213 | 8_4:+1042070 | Msa1306250:CDS |
| AGAGTCTATTGCTCAGGCAT+TGG | 0.499267 | 8_4:+1042076 | Msa1306250:CDS |
| ACCAAGTACACGATAAAGAA+TGG | 0.500491 | 8_4:-1042126 | None:intergenic |
| CAGCTGTTCTTGCAGCTGTG+AGG | 0.517302 | 8_4:-1042613 | None:intergenic |
| CTTTCTGAGGCAGCGAATTG+AGG | 0.519044 | 8_4:+1042415 | Msa1306250:CDS |
| GTCAAGTGCCTATGAACGAT+TGG | 0.521697 | 8_4:-1042992 | None:intergenic |
| GGGACATTGGATCAAGGTGC+TGG | 0.531380 | 8_4:+1043169 | Msa1306250:CDS |
| TCTATGGCACCTTGTTGAGC+TGG | 0.543072 | 8_4:-1042656 | None:intergenic |
| GCAATAGACTCTGTTGTGGC+AGG | 0.543654 | 8_4:-1042065 | None:intergenic |
| CTCCAGAAGGGTATCATACA+GGG | 0.544409 | 8_4:-1043017 | None:intergenic |
| CTCAATTCGCTGCCTCAGAA+AGG | 0.545619 | 8_4:-1042414 | None:intergenic |
| TGCAAAGATTCTGCTCCAGA+AGG | 0.549152 | 8_4:-1043030 | None:intergenic |
| CATGTTGCTGTGTAAGATCA+TGG | 0.549562 | 8_4:+1042802 | Msa1306250:CDS |
| CGAGCTTCCCATTGATCACG+TGG | 0.562921 | 8_4:+1043105 | Msa1306250:CDS |
| ACGAGACTTCAAGGCACAGT+TGG | 0.565359 | 8_4:+1042961 | Msa1306250:CDS |
| CCTTAGTGGCTTGGTCAAAG+AGG | 0.571283 | 8_4:+1042493 | Msa1306250:CDS |
| AGAGCATCAGGGGATGAAGA+AGG | 0.572998 | 8_4:-1042152 | None:intergenic |
| GATTGATTGAACCATTCTCA+AGG | 0.573343 | 8_4:+1043053 | Msa1306250:CDS |
| GATTCTTCATGCTGAAGAGA+AGG | 0.574447 | 8_4:+1042691 | Msa1306250:CDS |
| GTGCCATAGATTTGCAGAGT+GGG | 0.575197 | 8_4:+1042669 | Msa1306250:CDS |
| TTCGCTGGGACATTGGATCA+AGG | 0.575199 | 8_4:+1043163 | Msa1306250:CDS |
| GCAAGTCTATGTCTACAAGT+AGG | 0.577240 | 8_4:-1042538 | None:intergenic |
| CTTTCATGCGCAGAGCATCA+GGG | 0.581958 | 8_4:-1042163 | None:intergenic |
| AAGAAGACATGGCTGCAGCT+AGG | 0.582628 | 8_4:-1042037 | None:intergenic |
| GGAATCATATCCTCTAAAGC+AGG | 0.583289 | 8_4:+1042848 | Msa1306250:CDS |
| TAGACTCTGTTGTGGCAGGA+AGG | 0.584069 | 8_4:-1042061 | None:intergenic |
| CATGTATTTCAGGCTAAAGA+CGG | 0.589827 | 8_4:-1042783 | None:intergenic |
| AAGGCTTGCTACTCTTCTGA+TGG | 0.595479 | 8_4:+1042439 | Msa1306250:CDS |
| TGAGGCAGCGAATTGAGGCA+AGG | 0.595879 | 8_4:+1042420 | Msa1306250:CDS |
| AGTCAAGCTGATGATGTGGC+TGG | 0.596537 | 8_4:+1042827 | Msa1306250:CDS |
| ATGGCACCTTGTTGAGCTGG+TGG | 0.598642 | 8_4:-1042653 | None:intergenic |
| TTCTAATGTTGGGAAAGTCG+TGG | 0.601063 | 8_4:+1043255 | Msa1306250:CDS |
| ATTTGTAACTCAGATGTCCC+TGG | 0.601526 | 8_4:-1042344 | None:intergenic |
| TTTCATGCGCAGAGCATCAG+GGG | 0.602569 | 8_4:-1042162 | None:intergenic |
| CTTGCCTGAGAAGGTCGGTG+AGG | 0.609314 | 8_4:-1042202 | None:intergenic |
| ATTGATTGAACCATTCTCAA+GGG | 0.609884 | 8_4:+1043054 | Msa1306250:CDS |
| GCAAAGATTCTGCTCCAGAA+GGG | 0.618885 | 8_4:-1043029 | None:intergenic |
| ACAGCCTTCTCACTCAGTTG+AGG | 0.623185 | 8_4:+1042246 | Msa1306250:CDS |
| ATGACCTCAACTGAGTGAGA+AGG | 0.626789 | 8_4:-1042250 | None:intergenic |
| ATGAAAAGCGTACCTTTCTG+AGG | 0.631690 | 8_4:+1042402 | Msa1306250:CDS |
| TATGCAAAGAAATGGTGCAA+TGG | 0.632106 | 8_4:+1042372 | Msa1306250:CDS |
| GGCAGGAAGGAAAGAAGACA+TGG | 0.635532 | 8_4:-1042048 | None:intergenic |
| ATTCTCTTGCCTGAGAAGGT+CGG | 0.636643 | 8_4:-1042207 | None:intergenic |
| TAGGATCGTCAAAGATGACA+AGG | 0.650133 | 8_4:-1043195 | None:intergenic |
| GAGACTTCAAGGCACAGTTG+GGG | 0.656008 | 8_4:+1042963 | Msa1306250:CDS |
| TATGTTCCACCAGCTCAACA+AGG | 0.660678 | 8_4:+1042647 | Msa1306250:CDS |
| GGTTAGTCAAGCTGATGATG+TGG | 0.670365 | 8_4:+1042823 | Msa1306250:CDS |
| AAAACTGCAAAGATTGTGAG+GGG | 0.672793 | 8_4:+1042296 | Msa1306250:CDS |
| ATTCTGTTGCTAAAATACCA+GGG | 0.677431 | 8_4:+1042327 | Msa1306250:CDS |
| AGACTTCAAGGCACAGTTGG+GGG | 0.696743 | 8_4:+1042964 | Msa1306250:CDS |
| CTGAGCAATAGACTCTGTTG+TGG | 0.698808 | 8_4:-1042069 | None:intergenic |
| GGTGCCATAGATTTGCAGAG+TGG | 0.753705 | 8_4:+1042668 | Msa1306250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTTTTAATTTAAAAA+AGG | + | chr8_4:1038713-1038732 | Msa1306250:intron | 0.0% |
| !!! | TAATAAATAAGAGATTTTTT+TGG | + | chr8_4:1038208-1038227 | Msa1306250:intron | 10.0% |
| !!! | TTTAATTTTTTTTTACAATG+AGG | - | chr8_4:1038373-1038392 | None:intergenic | 10.0% |
| !!! | AATTAAAATTTTTAATGATG+TGG | - | chr8_4:1038428-1038447 | None:intergenic | 10.0% |
| !! | TTAAATATGAAGAAAAAAAT+TGG | + | chr8_4:1038511-1038530 | Msa1306250:intron | 10.0% |
| !!! | ATTAGTTTTTTTTTAAAATC+TGG | + | chr8_4:1038536-1038555 | Msa1306250:intron | 10.0% |
| !!! | TAAAACAAAATATTTTTTGA+AGG | + | chr8_4:1038867-1038886 | Msa1306250:intron | 10.0% |
| !!! | AAAACAAAATATTTTTTGAA+GGG | + | chr8_4:1038868-1038887 | Msa1306250:intron | 10.0% |
| !!! | TTAAATATTTTTTTTTCACA+AGG | + | chr8_4:1038897-1038916 | Msa1306250:intron | 10.0% |
| !!! | AATTAATAATTTCTTTTAGA+TGG | - | chr8_4:1039041-1039060 | None:intergenic | 10.0% |
| !!! | CTTATTTTTATTTTTTTTTG+AGG | + | chr8_4:1039544-1039563 | Msa1306250:intron | 10.0% |
| !! | CATATTTCAATATATTAATT+GGG | - | chr8_4:1040272-1040291 | None:intergenic | 10.0% |
| !! | ACATATTTCAATATATTAAT+TGG | - | chr8_4:1040273-1040292 | None:intergenic | 10.0% |
| !! | ATTAATATATTGAAATATGT+TGG | + | chr8_4:1040273-1040292 | Msa1306250:intron | 10.0% |
| !!! | TGTACAATATAATTTAGTTT+TGG | + | chr8_4:1041000-1041019 | Msa1306250:intron | 15.0% |
| !!! | AAAAAAATACATTTTGTCAA+TGG | - | chr8_4:1042005-1042024 | None:intergenic | 15.0% |
| !!! | GAAACTTTAGAGAAAAAATT+GGG | - | chr8_4:1038127-1038146 | None:intergenic | 20.0% |
| !!! | TGAAACTTTAGAGAAAAAAT+TGG | - | chr8_4:1038128-1038147 | None:intergenic | 20.0% |
| !!! | TCTCTTATTTATTAAGTTCA+AGG | - | chr8_4:1038202-1038221 | None:intergenic | 20.0% |
| !!! | TAAATAAGAGATTTTTTTGG+CGG | + | chr8_4:1038211-1038230 | Msa1306250:intron | 20.0% |
| !!! | ATTTTGATCAAATCATGTTT+GGG | + | chr8_4:1039459-1039478 | Msa1306250:intron | 20.0% |
| !!! | TAGTCAAAGCTTTATTATTT+AGG | + | chr8_4:1039506-1039525 | Msa1306250:intron | 20.0% |
| !!! | AGTCAAAGCTTTATTATTTA+GGG | + | chr8_4:1039507-1039526 | Msa1306250:intron | 20.0% |
| !!! | ATTTTTGCAACAATTTCAAA+AGG | - | chr8_4:1039704-1039723 | None:intergenic | 20.0% |
| !! | AAAAATAGAGTAATACCTTT+AGG | - | chr8_4:1040177-1040196 | None:intergenic | 20.0% |
| !! | TCAATATATTAATTGGGTTT+AGG | - | chr8_4:1040266-1040285 | None:intergenic | 20.0% |
| !! | TCATATTTCAAATCATCAAA+TGG | + | chr8_4:1040471-1040490 | Msa1306250:intron | 20.0% |
| !! | TAATATCATGTTACAAACTT+AGG | - | chr8_4:1040809-1040828 | None:intergenic | 20.0% |
| !! | AAATTGAAAAGTAAACTTCA+CGG | - | chr8_4:1041635-1041654 | None:intergenic | 20.0% |
| !! | CACTCTTAATTTGAGTATTT+AGG | - | chr8_4:1038165-1038184 | None:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | - | chr8_4:1038259-1038278 | None:intergenic | 25.0% |
| !!! | ATTATGATTTGGCTTAGTTT+TGG | - | chr8_4:1038824-1038843 | None:intergenic | 25.0% |
| ! | ATGCAATTCTTCTGTAATTT+AGG | - | chr8_4:1038940-1038959 | None:intergenic | 25.0% |
| ! | GAAAATTCAGAAATTTGAAC+AGG | - | chr8_4:1039292-1039311 | None:intergenic | 25.0% |
| !! | CTGAATTTTCAAATCTGTAA+CGG | + | chr8_4:1039302-1039321 | Msa1306250:intron | 25.0% |
| !!! | GATTTTGATCAAATCATGTT+TGG | + | chr8_4:1039458-1039477 | Msa1306250:intron | 25.0% |
| !! | TTTATTATTTAGGGCTTGTT+TGG | + | chr8_4:1039516-1039535 | Msa1306250:intron | 25.0% |
| ! | TATTATTCATAAGCTTGTCT+AGG | - | chr8_4:1039615-1039634 | None:intergenic | 25.0% |
| ! | AAAAATAAGCCAATCCAAAT+GGG | + | chr8_4:1039678-1039697 | Msa1306250:intron | 25.0% |
| !! | TAACTGATTCATGTCATTAT+AGG | - | chr8_4:1039771-1039790 | None:intergenic | 25.0% |
| !! | TTATGTTGTTTATCCAAACA+GGG | - | chr8_4:1039834-1039853 | None:intergenic | 25.0% |
| !! | ATTATGTTGTTTATCCAAAC+AGG | - | chr8_4:1039835-1039854 | None:intergenic | 25.0% |
| ! | AAAATATGAAAACTCAAGCT+TGG | - | chr8_4:1040029-1040048 | None:intergenic | 25.0% |
| !! | AGCTTGAGTTTTCATATTTT+TGG | + | chr8_4:1040029-1040048 | Msa1306250:intron | 25.0% |
| !!! | TTTTCAAGATTATGTGCAAA+AGG | + | chr8_4:1040198-1040217 | Msa1306250:intron | 25.0% |
| ! | ATACATCATACATATGATCT+GGG | - | chr8_4:1040785-1040804 | None:intergenic | 25.0% |
| ! | ATGTTGAATGTTCAACTAAA+TGG | - | chr8_4:1040960-1040979 | None:intergenic | 25.0% |
| !!! | AGATTTGGTTTTTCTGATTT+GGG | - | chr8_4:1041266-1041285 | None:intergenic | 25.0% |
| ! | ATAATACATGTAGAGTGTAA+TGG | + | chr8_4:1041521-1041540 | Msa1306250:intron | 25.0% |
| !!! | GGTTTTACTTTGGTTTTATA+CGG | - | chr8_4:1041614-1041633 | None:intergenic | 25.0% |
| ! | CAAATATACAAAGGAAAAGA+AGG | - | chr8_4:1041691-1041710 | None:intergenic | 25.0% |
| !! | CTTCTTTTCCTTTGTATATT+TGG | + | chr8_4:1041689-1041708 | Msa1306250:intron | 25.0% |
| ! | CTGTAATACCAAATATACAA+AGG | - | chr8_4:1041700-1041719 | None:intergenic | 25.0% |
| ! | AAATTCCATTAGATGATCAT+GGG | - | chr8_4:1041899-1041918 | None:intergenic | 25.0% |
| ! | AATTTCACTATGCAAAGAAA+TGG | + | chr8_4:1042364-1042383 | Msa1306250:CDS | 25.0% |
| !! | AAATAATTTCAGGGATCTTT+TGG | - | chr8_4:1042930-1042949 | None:intergenic | 25.0% |
| ! | AGCAGTTTCAAATAATTTCA+GGG | - | chr8_4:1042939-1042958 | None:intergenic | 25.0% |
| ! | AAGCAGTTTCAAATAATTTC+AGG | - | chr8_4:1042940-1042959 | None:intergenic | 25.0% |
| ! | TTAGAAACCATTTCTAATGT+TGG | + | chr8_4:1043244-1043263 | Msa1306250:CDS | 25.0% |
| ! | TAGAAACCATTTCTAATGTT+GGG | + | chr8_4:1043245-1043264 | Msa1306250:CDS | 25.0% |
| ! | TGTTGTGATTGTGATTTTGT+TGG | - | chr8_4:1038073-1038092 | None:intergenic | 30.0% |
| ACGGGGATACTTAATAAATA+AGG | + | chr8_4:1038300-1038319 | Msa1306250:intron | 30.0% | |
| CGGGGATACTTAATAAATAA+GGG | + | chr8_4:1038301-1038320 | Msa1306250:intron | 30.0% | |
| AAGCCAAATCATAATTGAAG+TGG | + | chr8_4:1038829-1038848 | Msa1306250:intron | 30.0% | |
| AGCCAAATCATAATTGAAGT+GGG | + | chr8_4:1038830-1038849 | Msa1306250:intron | 30.0% | |
| ! | GTGCATTCATCTCTTATTTA+TGG | - | chr8_4:1038970-1038989 | None:intergenic | 30.0% |
| AGAAATTTGAACAGGAGAAA+AGG | - | chr8_4:1039284-1039303 | None:intergenic | 30.0% | |
| !! | TCCTTTGATTTTTGTTCTCA+CGG | + | chr8_4:1039352-1039371 | Msa1306250:intron | 30.0% |
| CAAAAATAAGCCAATCCAAA+TGG | + | chr8_4:1039677-1039696 | Msa1306250:intron | 30.0% | |
| GATCTTCTAAATTAGTCCTT+TGG | + | chr8_4:1039725-1039744 | Msa1306250:intron | 30.0% | |
| TCTAAATTAGTCCTTTGGAT+TGG | + | chr8_4:1039730-1039749 | Msa1306250:intron | 30.0% | |
| CAACTTAAAGCTGATAAGTT+TGG | + | chr8_4:1039808-1039827 | Msa1306250:intron | 30.0% | |
| AAAGTTCATCTGATTAGCAT+TGG | + | chr8_4:1040108-1040127 | Msa1306250:intron | 30.0% | |
| !! | ATTAGCATTGGATTTTAGTC+TGG | + | chr8_4:1040120-1040139 | Msa1306250:intron | 30.0% |
| AGAGCCTAATAATTAAGACT+CGG | + | chr8_4:1040340-1040359 | Msa1306250:intron | 30.0% | |
| ! | TGTATTTCTAATCCAGCTTA+GGG | + | chr8_4:1040498-1040517 | Msa1306250:intron | 30.0% |
| AATAAAGGAAATGGGCAATT+AGG | - | chr8_4:1040532-1040551 | None:intergenic | 30.0% | |
| ! | TCTTCTGCAATTTCTGAAAA+CGG | + | chr8_4:1040642-1040661 | Msa1306250:intron | 30.0% |
| AAGTATAACTTATCCCTTGA+AGG | - | chr8_4:1040692-1040711 | None:intergenic | 30.0% | |
| CATACATCATACATATGATC+TGG | - | chr8_4:1040786-1040805 | None:intergenic | 30.0% | |
| AAACATTAACATGTTGTGCT+TGG | + | chr8_4:1040849-1040868 | Msa1306250:intron | 30.0% | |
| ! | TTTCCTTTTCTATGAGAGTT+AGG | + | chr8_4:1040886-1040905 | Msa1306250:intron | 30.0% |
| TAACCTAACTCTCATAGAAA+AGG | - | chr8_4:1040892-1040911 | None:intergenic | 30.0% | |
| !!! | TAGTTTTGGTCAATGATTCA+TGG | + | chr8_4:1041014-1041033 | Msa1306250:intron | 30.0% |
| ! | TTCCTTTTTATTCACAGTAC+AGG | - | chr8_4:1041089-1041108 | None:intergenic | 30.0% |
| AGAAAAACTCACATAGTTAG+AGG | - | chr8_4:1041119-1041138 | None:intergenic | 30.0% | |
| ! | AACTATGTGAGTTTTTCTTG+TGG | + | chr8_4:1041121-1041140 | Msa1306250:intron | 30.0% |
| AATCTCTGGTAAAATTTGTG+AGG | + | chr8_4:1041174-1041193 | Msa1306250:intron | 30.0% | |
| !!! | CAGATTTGGTTTTTCTGATT+TGG | - | chr8_4:1041267-1041286 | None:intergenic | 30.0% |
| ATGTATTATACTGCTATACC+AGG | - | chr8_4:1041510-1041529 | None:intergenic | 30.0% | |
| ! | ATTTGAAGCAGAAATTGCAA+AGG | - | chr8_4:1041556-1041575 | None:intergenic | 30.0% |
| ! | TAAACTTCACGGTTTTACTT+TGG | - | chr8_4:1041624-1041643 | None:intergenic | 30.0% |
| CAAATTCCATTAGATGATCA+TGG | - | chr8_4:1041900-1041919 | None:intergenic | 30.0% | |
| GAAAGATATAGTGTAAGAGA+AGG | - | chr8_4:1041933-1041952 | None:intergenic | 30.0% | |
| AAAAACTGCAAAGATTGTGA+GGG | + | chr8_4:1042295-1042314 | Msa1306250:CDS | 30.0% | |
| ATTCTGTTGCTAAAATACCA+GGG | + | chr8_4:1042327-1042346 | Msa1306250:CDS | 30.0% | |
| !!! | TGCTTTGGGAAGATTTTTTA+AGG | - | chr8_4:1042585-1042604 | None:intergenic | 30.0% |
| ATTGATTGAACCATTCTCAA+GGG | + | chr8_4:1043054-1043073 | Msa1306250:CDS | 30.0% | |
| ! | GGATATATAGCATCAGTTTT+AGG | - | chr8_4:1043217-1043236 | None:intergenic | 30.0% |
| CATAATATATGCAAGGTCTG+AGG | - | chr8_4:1038252-1038271 | None:intergenic | 35.0% | |
| GCCAAATCATAATTGAAGTG+GGG | + | chr8_4:1038831-1038850 | Msa1306250:intron | 35.0% | |
| ACCCCACTTCAATTATGATT+TGG | - | chr8_4:1038835-1038854 | None:intergenic | 35.0% | |
| AAAGAGAGTGAAGCAAGAAA+CGG | + | chr8_4:1039153-1039172 | Msa1306250:intron | 35.0% | |
| ACCGTGAGAACAAAAATCAA+AGG | - | chr8_4:1039356-1039375 | None:intergenic | 35.0% | |
| !! | TTTGATTTTTGTTCTCACGG+TGG | + | chr8_4:1039355-1039374 | Msa1306250:intron | 35.0% |
| ! | TTGCTGATACCGTTTTGTAA+CGG | + | chr8_4:1039378-1039397 | Msa1306250:intron | 35.0% |
| AACAACCAACATCTCAAAGA+AGG | - | chr8_4:1039423-1039442 | None:intergenic | 35.0% | |
| ! | GATGTTGGTTGTTTATAACG+TGG | + | chr8_4:1039430-1039449 | Msa1306250:intron | 35.0% |
| ! | TATTTAGGGCTTGTTTGGAT+TGG | + | chr8_4:1039521-1039540 | Msa1306250:intron | 35.0% |
| ACAATTTCAAAAGGCCCATT+TGG | - | chr8_4:1039695-1039714 | None:intergenic | 35.0% | |
| CATACAACAAATGGGACAAA+GGG | - | chr8_4:1040004-1040023 | None:intergenic | 35.0% | |
| TCATACAACAAATGGGACAA+AGG | - | chr8_4:1040005-1040024 | None:intergenic | 35.0% | |
| GCTTGGTTCATACAACAAAT+GGG | - | chr8_4:1040012-1040031 | None:intergenic | 35.0% | |
| AGCTTGGTTCATACAACAAA+TGG | - | chr8_4:1040013-1040032 | None:intergenic | 35.0% | |
| TATGCATCAAGCATTAAAGC+CGG | - | chr8_4:1040071-1040090 | None:intergenic | 35.0% | |
| TGTAACATCATTGAGCCTAA+AGG | + | chr8_4:1040159-1040178 | Msa1306250:intron | 35.0% | |
| TTTAGATCAAATAGCCTGCT+GGG | + | chr8_4:1040300-1040319 | Msa1306250:intron | 35.0% | |
| AGAGCCGAGTCTTAATTATT+AGG | - | chr8_4:1040347-1040366 | None:intergenic | 35.0% | |
| AATAATTAAGACTCGGCTCT+TGG | + | chr8_4:1040347-1040366 | Msa1306250:intron | 35.0% | |
| ! | CATAATCACTAGAGTGCTAT+TGG | + | chr8_4:1040442-1040461 | Msa1306250:intron | 35.0% |
| ! | GTGTATTTCTAATCCAGCTT+AGG | + | chr8_4:1040497-1040516 | Msa1306250:intron | 35.0% |
| ATCCGCACAATAAAGGAAAT+GGG | - | chr8_4:1040540-1040559 | None:intergenic | 35.0% | |
| AATCCGCACAATAAAGGAAA+TGG | - | chr8_4:1040541-1040560 | None:intergenic | 35.0% | |
| TTTCCTTTATTGTGCGGATT+TGG | + | chr8_4:1040541-1040560 | Msa1306250:intron | 35.0% | |
| TAACCAAATCCGCACAATAA+AGG | - | chr8_4:1040547-1040566 | None:intergenic | 35.0% | |
| CATTGCTTAATGACTAAGGA+CGG | - | chr8_4:1040570-1040589 | None:intergenic | 35.0% | |
| TCCTTAGTCATTAAGCAATG+TGG | + | chr8_4:1040570-1040589 | Msa1306250:intron | 35.0% | |
| ACCACATTGCTTAATGACTA+AGG | - | chr8_4:1040574-1040593 | None:intergenic | 35.0% | |
| ! | TAAGCAATGTGGTGTTAAGT+AGG | + | chr8_4:1040581-1040600 | Msa1306250:intron | 35.0% |
| ! | AATGTGGTGTTAAGTAGGTA+TGG | + | chr8_4:1040586-1040605 | Msa1306250:intron | 35.0% |
| TGGATGCTTACAATAGTAGT+AGG | + | chr8_4:1040606-1040625 | Msa1306250:intron | 35.0% | |
| GGATGCTTACAATAGTAGTA+GGG | + | chr8_4:1040607-1040626 | Msa1306250:intron | 35.0% | |
| AATAGTAGTAGGGATTTCCT+TGG | + | chr8_4:1040617-1040636 | Msa1306250:intron | 35.0% | |
| ! | GTTTTCAGAAATTGCAGAAG+AGG | - | chr8_4:1040643-1040662 | None:intergenic | 35.0% |
| TTTGGTCAATGATTCATGGT+CGG | + | chr8_4:1041018-1041037 | Msa1306250:intron | 35.0% | |
| CTCCTGTACTGTGAATAAAA+AGG | + | chr8_4:1041084-1041103 | Msa1306250:intron | 35.0% | |
| ! | TGTGAGTTTTTCTTGTGGTA+TGG | + | chr8_4:1041126-1041145 | Msa1306250:intron | 35.0% |
| TAGACATAGATGAGAATCTC+TGG | + | chr8_4:1041160-1041179 | Msa1306250:intron | 35.0% | |
| ACAGGTAGTCTAATCAGATT+TGG | - | chr8_4:1041281-1041300 | None:intergenic | 35.0% | |
| ! | TGACTTGTCAGTAGTGTTAA+TGG | + | chr8_4:1041796-1041815 | Msa1306250:intron | 35.0% |
| GACTTGTCAGTAGTGTTAAT+GGG | + | chr8_4:1041797-1041816 | Msa1306250:intron | 35.0% | |
| !! | TTAATGGGTTTGCAAGGTTT+GGG | + | chr8_4:1041812-1041831 | Msa1306250:intron | 35.0% |
| AGTTTCGAACCTAGTTAAAG+AGG | - | chr8_4:1041844-1041863 | None:intergenic | 35.0% | |
| CTTTAACTAGGTTCGAAACT+TGG | + | chr8_4:1041844-1041863 | Msa1306250:intron | 35.0% | |
| TCCATTCTTTATCGTGTACT+TGG | + | chr8_4:1042125-1042144 | Msa1306250:CDS | 35.0% | |
| ACCAAGTACACGATAAAGAA+TGG | - | chr8_4:1042129-1042148 | None:intergenic | 35.0% | |
| ! | ATTCTTTTCCTTGATTCCCA+AGG | + | chr8_4:1042271-1042290 | Msa1306250:CDS | 35.0% |
| ! | ATCTTTGCAGTTTTTGCCTT+GGG | - | chr8_4:1042290-1042309 | None:intergenic | 35.0% |
| ! | AATCTTTGCAGTTTTTGCCT+TGG | - | chr8_4:1042291-1042310 | None:intergenic | 35.0% |
| CAAAAACTGCAAAGATTGTG+AGG | + | chr8_4:1042294-1042313 | Msa1306250:CDS | 35.0% | |
| AAAACTGCAAAGATTGTGAG+GGG | + | chr8_4:1042296-1042315 | Msa1306250:CDS | 35.0% | |
| GATTCTGTTGCTAAAATACC+AGG | + | chr8_4:1042326-1042345 | Msa1306250:CDS | 35.0% | |
| TATGCAAAGAAATGGTGCAA+TGG | + | chr8_4:1042372-1042391 | Msa1306250:CDS | 35.0% | |
| TACTCTTCTGATGGAAAGTA+AGG | + | chr8_4:1042448-1042467 | Msa1306250:CDS | 35.0% | |
| CATGTATTTCAGGCTAAAGA+CGG | - | chr8_4:1042786-1042805 | None:intergenic | 35.0% | |
| TACACAGCAACATGTATTTC+AGG | - | chr8_4:1042796-1042815 | None:intergenic | 35.0% | |
| GATTGATTGAACCATTCTCA+AGG | + | chr8_4:1043053-1043072 | Msa1306250:CDS | 35.0% | |
| ! | ATTTTAGACAAGAAGTTCGC+TGG | + | chr8_4:1043148-1043167 | Msa1306250:CDS | 35.0% |
| ! | TTTTAGACAAGAAGTTCGCT+GGG | + | chr8_4:1043149-1043168 | Msa1306250:CDS | 35.0% |
| !! | GAAATGGTTTCTAAAGTTGC+AGG | - | chr8_4:1043238-1043257 | None:intergenic | 35.0% |
| GACTTTCCCAACATTAGAAA+TGG | - | chr8_4:1043254-1043273 | None:intergenic | 35.0% | |
| ! | TGAGTTTAGCTCAGTTGGTA+GGG | - | chr8_4:1038281-1038300 | None:intergenic | 40.0% |
| TACCAACTGAGCTAAACTCA+CGG | + | chr8_4:1038281-1038300 | Msa1306250:intron | 40.0% | |
| TGCAATTCGTCCCTGTAATT+TGG | + | chr8_4:1038332-1038351 | Msa1306250:intron | 40.0% | |
| GCAATTCGTCCCTGTAATTT+GGG | + | chr8_4:1038333-1038352 | Msa1306250:intron | 40.0% | |
| CAAAACGCTCCCAAATTACA+GGG | - | chr8_4:1038345-1038364 | None:intergenic | 40.0% | |
| TCAAAACGCTCCCAAATTAC+AGG | - | chr8_4:1038346-1038365 | None:intergenic | 40.0% | |
| TCATAATTGAAGTGGGGTCA+TGG | + | chr8_4:1038837-1038856 | Msa1306250:intron | 40.0% | |
| CCAACATCTCAAAGAAGGAA+CGG | - | chr8_4:1039418-1039437 | None:intergenic | 40.0% | |
| ATCATGTTTGGGCGTCTAAA+TGG | + | chr8_4:1039470-1039489 | Msa1306250:intron | 40.0% | |
| TTCAAAAGGCCCATTTGGAT+TGG | - | chr8_4:1039690-1039709 | None:intergenic | 40.0% | |
| ATTGCTCAAGTCCAATCCAA+AGG | - | chr8_4:1039744-1039763 | None:intergenic | 40.0% | |
| ! | TTGGATTGGACTTGAGCAAT+TGG | + | chr8_4:1039744-1039763 | Msa1306250:intron | 40.0% |
| ! | TGGATTGGACTTGAGCAATT+GGG | + | chr8_4:1039745-1039764 | Msa1306250:intron | 40.0% |
| !! | GTTTGGGTTGGCTTATTTGA+GGG | - | chr8_4:1039978-1039997 | None:intergenic | 40.0% |
| !! | TGTTTGGGTTGGCTTATTTG+AGG | - | chr8_4:1039979-1039998 | None:intergenic | 40.0% |
| !! | AAGCCGGTTGATAGACTAAT+GGG | - | chr8_4:1040055-1040074 | None:intergenic | 40.0% |
| !! | AAAGCCGGTTGATAGACTAA+TGG | - | chr8_4:1040056-1040075 | None:intergenic | 40.0% |
| AATTGGGTTTAGGCTCAATG+AGG | - | chr8_4:1040256-1040275 | None:intergenic | 40.0% | |
| GTTTAGATCAAATAGCCTGC+TGG | + | chr8_4:1040299-1040318 | Msa1306250:intron | 40.0% | |
| !!! | AACCAGAGCTTGTTTTGCTT+AGG | - | chr8_4:1040382-1040401 | None:intergenic | 40.0% |
| ! | AAGCAAAACAAGCTCTGGTT+TGG | + | chr8_4:1040382-1040401 | Msa1306250:intron | 40.0% |
| TGCCCATTTCCTTTATTGTG+CGG | + | chr8_4:1040535-1040554 | Msa1306250:intron | 40.0% | |
| AACTGTTGTGATTGCCTTCA+AGG | + | chr8_4:1040675-1040694 | Msa1306250:intron | 40.0% | |
| ACTGTTGTGATTGCCTTCAA+GGG | + | chr8_4:1040676-1040695 | Msa1306250:intron | 40.0% | |
| !! | AAAAACAGATTAGCCTTCGC+TGG | - | chr8_4:1041052-1041071 | None:intergenic | 40.0% |
| AAAGCGGTTGACACAAGATA+CGG | - | chr8_4:1041229-1041248 | None:intergenic | 40.0% | |
| GGTTTGTCAAGTGACAAAAG+CGG | - | chr8_4:1041245-1041264 | None:intergenic | 40.0% | |
| CTCATCAATGTCAAGAGAAC+AGG | - | chr8_4:1041299-1041318 | None:intergenic | 40.0% | |
| CTCATCAATGTCAAGAGAAC+AGG | - | chr8_4:1041299-1041318 | None:intergenic | 40.0% | |
| !! | GTAGTGTTAATGGGTTTGCA+AGG | + | chr8_4:1041806-1041825 | Msa1306250:intron | 40.0% |
| !! | GTTAATGGGTTTGCAAGGTT+TGG | + | chr8_4:1041811-1041830 | Msa1306250:intron | 40.0% |
| !! | TAATGGGTTTGCAAGGTTTG+GGG | + | chr8_4:1041813-1041832 | Msa1306250:intron | 40.0% |
| TTAGATGATCATGGGAGACA+TGG | - | chr8_4:1041891-1041910 | None:intergenic | 40.0% | |
| TGTCTCCCATGATCATCTAA+TGG | + | chr8_4:1041891-1041910 | Msa1306250:intron | 40.0% | |
| GATAGTAATGCACAACTCGT+TGG | + | chr8_4:1041964-1041983 | Msa1306250:intron | 40.0% | |
| ! | AGTTTTTGCCTTGGGAATCA+AGG | - | chr8_4:1042282-1042301 | None:intergenic | 40.0% |
| ATTTGTAACTCAGATGTCCC+TGG | - | chr8_4:1042347-1042366 | None:intergenic | 40.0% | |
| ! | ATGAAAAGCGTACCTTTCTG+AGG | + | chr8_4:1042402-1042421 | Msa1306250:CDS | 40.0% |
| GCAAGTCTATGTCTACAAGT+AGG | - | chr8_4:1042541-1042560 | None:intergenic | 40.0% | |
| AATCCCACTCTGCAAATCTA+TGG | - | chr8_4:1042675-1042694 | None:intergenic | 40.0% | |
| GATTCTTCATGCTGAAGAGA+AGG | + | chr8_4:1042691-1042710 | Msa1306250:CDS | 40.0% | |
| CATGTTGCTGTGTAAGATCA+TGG | + | chr8_4:1042802-1042821 | Msa1306250:CDS | 40.0% | |
| !! | GGAATCATATCCTCTAAAGC+AGG | + | chr8_4:1042848-1042867 | Msa1306250:CDS | 40.0% |
| AATCAGGTCCAAGATATTGC+AGG | - | chr8_4:1042874-1042893 | None:intergenic | 40.0% | |
| GCAATATCTTGGACCTGATT+TGG | + | chr8_4:1042874-1042893 | Msa1306250:CDS | 40.0% | |
| GCTTTCATTGCATCCAAATC+AGG | - | chr8_4:1042890-1042909 | None:intergenic | 40.0% | |
| AACTGCTTTACGAGACTTCA+AGG | + | chr8_4:1042952-1042971 | Msa1306250:CDS | 40.0% | |
| GCAATTTCAACCCTTGAGAA+TGG | - | chr8_4:1043067-1043086 | None:intergenic | 40.0% | |
| TAGGATCGTCAAAGATGACA+AGG | - | chr8_4:1043198-1043217 | None:intergenic | 40.0% | |
| TTCTAATGTTGGGAAAGTCG+TGG | + | chr8_4:1043255-1043274 | Msa1306250:CDS | 40.0% | |
| ! | TCGTGGACAGTCTTTTTGTT+AGG | + | chr8_4:1043272-1043291 | Msa1306250:CDS | 40.0% |
| !!! | GAGATTTTTTTGGCGGTGTC+CGG | + | chr8_4:1038218-1038237 | Msa1306250:intron | 45.0% |
| !!! | AGATTTTTTTGGCGGTGTCC+GGG | + | chr8_4:1038219-1038238 | Msa1306250:intron | 45.0% |
| ! | AAGGTCTGAGGTTCAAATCC+CGG | - | chr8_4:1038240-1038259 | None:intergenic | 45.0% |
| ! | GTGAGTTTAGCTCAGTTGGT+AGG | - | chr8_4:1038282-1038301 | None:intergenic | 45.0% |
| ACCAACTGAGCTAAACTCAC+GGG | + | chr8_4:1038282-1038301 | Msa1306250:intron | 45.0% | |
| ! | CCACGTGGCAAAATTTTGCA+GGG | - | chr8_4:1038401-1038420 | None:intergenic | 45.0% |
| ! | ACTGTGCAACTTTTGTCACG+TGG | - | chr8_4:1038784-1038803 | None:intergenic | 45.0% |
| CGCAAATCGCAAATCGCAAA+CGG | + | chr8_4:1039107-1039126 | Msa1306250:intron | 45.0% | |
| ! | ATCTGTAACGGAGTCCGTAA+CGG | + | chr8_4:1039314-1039333 | Msa1306250:intron | 45.0% |
| TCAAAGGAAAATCGCCGTTG+CGG | - | chr8_4:1039340-1039359 | None:intergenic | 45.0% | |
| TCTCAAAGAAGGAACGGTAC+CGG | - | chr8_4:1039412-1039431 | None:intergenic | 45.0% | |
| !! | CCGTTCCTTCTTTGAGATGT+TGG | + | chr8_4:1039415-1039434 | Msa1306250:intron | 45.0% |
| GTTTGGGCGTCTAAATGGTT+AGG | + | chr8_4:1039475-1039494 | Msa1306250:intron | 45.0% | |
| CTGATAAGTTTGGCCCTGTT+TGG | + | chr8_4:1039818-1039837 | Msa1306250:intron | 45.0% | |
| ATGGGACAAAGGGTCTGTTT+GGG | - | chr8_4:1039994-1040013 | None:intergenic | 45.0% | |
| AATGGGACAAAGGGTCTGTT+TGG | - | chr8_4:1039995-1040014 | None:intergenic | 45.0% | |
| ! | TGGCCCATTAGTCTATCAAC+CGG | + | chr8_4:1040049-1040068 | Msa1306250:intron | 45.0% |
| TCAACTCAGTTAAACCCAGC+AGG | - | chr8_4:1040317-1040336 | None:intergenic | 45.0% | |
| AGCCTAAGCAAAACAAGCTC+TGG | + | chr8_4:1040377-1040396 | Msa1306250:intron | 45.0% | |
| AGAAATTGCAGAAGAGGCCA+AGG | - | chr8_4:1040637-1040656 | None:intergenic | 45.0% | |
| TTGACACAAGATACGGCACA+GGG | - | chr8_4:1041222-1041241 | None:intergenic | 45.0% | |
| CACAGTCACACATCAATGTG+CGG | - | chr8_4:1041468-1041487 | None:intergenic | 45.0% | |
| GGGGATCTTCCTCTTTAACT+AGG | + | chr8_4:1041832-1041851 | Msa1306250:intron | 45.0% | |
| CTGAGCAATAGACTCTGTTG+TGG | - | chr8_4:1042072-1042091 | None:intergenic | 45.0% | |
| CACAACAGAGTCTATTGCTC+AGG | + | chr8_4:1042070-1042089 | Msa1306250:CDS | 45.0% | |
| AGAGTCTATTGCTCAGGCAT+TGG | + | chr8_4:1042076-1042095 | Msa1306250:CDS | 45.0% | |
| ATTCTCTTGCCTGAGAAGGT+CGG | - | chr8_4:1042210-1042229 | None:intergenic | 45.0% | |
| ACCTTCTCAGGCAAGAGAAT+AGG | + | chr8_4:1042210-1042229 | Msa1306250:CDS | 45.0% | |
| CCTTCTCAGGCAAGAGAATA+GGG | + | chr8_4:1042211-1042230 | Msa1306250:CDS | 45.0% | |
| ATGACCTCAACTGAGTGAGA+AGG | - | chr8_4:1042253-1042272 | None:intergenic | 45.0% | |
| !! | AAGGCTTGCTACTCTTCTGA+TGG | + | chr8_4:1042439-1042458 | Msa1306250:CDS | 45.0% |
| ! | CAAGCTTTGACTCTCCTTAG+TGG | + | chr8_4:1042479-1042498 | Msa1306250:CDS | 45.0% |
| TTTGACTCTCCTTAGTGGCT+TGG | + | chr8_4:1042484-1042503 | Msa1306250:CDS | 45.0% | |
| GCTTGGTCAAAGAGGTTAGA+AGG | + | chr8_4:1042501-1042520 | Msa1306250:CDS | 45.0% | |
| TATGTTCCACCAGCTCAACA+AGG | + | chr8_4:1042647-1042666 | Msa1306250:CDS | 45.0% | |
| GTGCCATAGATTTGCAGAGT+GGG | + | chr8_4:1042669-1042688 | Msa1306250:CDS | 45.0% | |
| TTCAGGCTAAAGACGGCTTT+GGG | - | chr8_4:1042779-1042798 | None:intergenic | 45.0% | |
| TTTCAGGCTAAAGACGGCTT+TGG | - | chr8_4:1042780-1042799 | None:intergenic | 45.0% | |
| ! | GGTTAGTCAAGCTGATGATG+TGG | + | chr8_4:1042823-1042842 | Msa1306250:CDS | 45.0% |
| ATATTGCAGGCCTGCTTTAG+AGG | - | chr8_4:1042861-1042880 | None:intergenic | 45.0% | |
| AAAGCAGGCCTGCAATATCT+TGG | + | chr8_4:1042863-1042882 | Msa1306250:CDS | 45.0% | |
| GGGATGATCCAATCGTTCAT+AGG | + | chr8_4:1042984-1043003 | Msa1306250:CDS | 45.0% | |
| GTCAAGTGCCTATGAACGAT+TGG | - | chr8_4:1042995-1043014 | None:intergenic | 45.0% | |
| ATCCCTGTATGATACCCTTC+TGG | + | chr8_4:1043015-1043034 | Msa1306250:CDS | 45.0% | |
| !! | CTCCAGAAGGGTATCATACA+GGG | - | chr8_4:1043020-1043039 | None:intergenic | 45.0% |
| GCAAAGATTCTGCTCCAGAA+GGG | - | chr8_4:1043032-1043051 | None:intergenic | 45.0% | |
| TGCAAAGATTCTGCTCCAGA+AGG | - | chr8_4:1043033-1043052 | None:intergenic | 45.0% | |
| TTTCGCTCCACGTGATCAAT+GGG | - | chr8_4:1043115-1043134 | None:intergenic | 45.0% | |
| !! | TCATATTTAAAAAAAATAAT+TGG | - | chr8_4:1038501-1038520 | None:intergenic | 5.0% |
| !!! | AAAAATATTTTGTTTTAAAA+AGG | - | chr8_4:1038864-1038883 | None:intergenic | 5.0% |
| CCAACTGAGCTAAACTCACG+GGG | + | chr8_4:1038283-1038302 | Msa1306250:intron | 50.0% | |
| ! | CCCTGCAAAATTTTGCCACG+TGG | + | chr8_4:1038398-1038417 | Msa1306250:intron | 50.0% |
| ! | GCCACGTGGCAAAATTTTGC+AGG | - | chr8_4:1038402-1038421 | None:intergenic | 50.0% |
| ! | TAATGATGTGGACTGCCACG+TGG | - | chr8_4:1038416-1038435 | None:intergenic | 50.0% |
| !!! | TTGGCTTAGTTTTGGCCACG+TGG | - | chr8_4:1038816-1038835 | None:intergenic | 50.0% |
| GAGAATCGCAAATCGCAAGC+AGG | + | chr8_4:1039182-1039201 | Msa1306250:intron | 50.0% | |
| GGATTGCGGCCGTTACAAAA+CGG | - | chr8_4:1039390-1039409 | None:intergenic | 50.0% | |
| ! | TTTTGTAACGGCCGCAATCC+CGG | + | chr8_4:1039390-1039409 | Msa1306250:intron | 50.0% |
| CTCAAAGAAGGAACGGTACC+GGG | - | chr8_4:1039411-1039430 | None:intergenic | 50.0% | |
| GACAAAGGGTCTGTTTGGGT+TGG | - | chr8_4:1039990-1040009 | None:intergenic | 50.0% | |
| CTAATCCAGCTTAGGGCAAG+CGG | + | chr8_4:1040505-1040524 | Msa1306250:intron | 50.0% | |
| TAATCCAGCTTAGGGCAAGC+GGG | + | chr8_4:1040506-1040525 | Msa1306250:intron | 50.0% | |
| !! | AACACAGAGAGCACTGCATG+AGG | - | chr8_4:1040721-1040740 | None:intergenic | 50.0% |
| GTTGACACAAGATACGGCAC+AGG | - | chr8_4:1041223-1041242 | None:intergenic | 50.0% | |
| GATGTGTGACTGTGTGCTGT+AGG | + | chr8_4:1041474-1041493 | Msa1306250:intron | 50.0% | |
| AGTGTAAGAGAAGGCGATGC+AGG | - | chr8_4:1041924-1041943 | None:intergenic | 50.0% | |
| !! | TGCACAACTCGTTGGCTTTC+AGG | + | chr8_4:1041972-1041991 | Msa1306250:intron | 50.0% |
| TAGACTCTGTTGTGGCAGGA+AGG | - | chr8_4:1042064-1042083 | None:intergenic | 50.0% | |
| GCAATAGACTCTGTTGTGGC+AGG | - | chr8_4:1042068-1042087 | None:intergenic | 50.0% | |
| !! | GTCTATTGCTCAGGCATTGG+AGG | + | chr8_4:1042079-1042098 | Msa1306250:CDS | 50.0% |
| ! | AGAGCATCAGGGGATGAAGA+AGG | - | chr8_4:1042155-1042174 | None:intergenic | 50.0% |
| ! | TTTCATGCGCAGAGCATCAG+GGG | - | chr8_4:1042165-1042184 | None:intergenic | 50.0% |
| ! | CTTTCATGCGCAGAGCATCA+GGG | - | chr8_4:1042166-1042185 | None:intergenic | 50.0% |
| ! | TCTTTCATGCGCAGAGCATC+AGG | - | chr8_4:1042167-1042186 | None:intergenic | 50.0% |
| CCCTATTCTCTTGCCTGAGA+AGG | - | chr8_4:1042214-1042233 | None:intergenic | 50.0% | |
| ACAGCCTTCTCACTCAGTTG+AGG | + | chr8_4:1042246-1042265 | Msa1306250:CDS | 50.0% | |
| CTCAATTCGCTGCCTCAGAA+AGG | - | chr8_4:1042417-1042436 | None:intergenic | 50.0% | |
| !! | CTTTCTGAGGCAGCGAATTG+AGG | + | chr8_4:1042415-1042434 | Msa1306250:CDS | 50.0% |
| CCTCTTTGACCAAGCCACTA+AGG | - | chr8_4:1042496-1042515 | None:intergenic | 50.0% | |
| !! | CCTTAGTGGCTTGGTCAAAG+AGG | + | chr8_4:1042493-1042512 | Msa1306250:CDS | 50.0% |
| ! | GTGAGGGCAGCTTTTGCTTT+GGG | - | chr8_4:1042599-1042618 | None:intergenic | 50.0% |
| ! | TGTGAGGGCAGCTTTTGCTT+TGG | - | chr8_4:1042600-1042619 | None:intergenic | 50.0% |
| AGCTGTTCTTGCAGCTGTGA+GGG | - | chr8_4:1042615-1042634 | None:intergenic | 50.0% | |
| TCTATGGCACCTTGTTGAGC+TGG | - | chr8_4:1042659-1042678 | None:intergenic | 50.0% | |
| ! | GGTGCCATAGATTTGCAGAG+TGG | + | chr8_4:1042668-1042687 | Msa1306250:CDS | 50.0% |
| ! | AGTCAAGCTGATGATGTGGC+TGG | + | chr8_4:1042827-1042846 | Msa1306250:CDS | 50.0% |
| ACGAGACTTCAAGGCACAGT+TGG | + | chr8_4:1042961-1042980 | Msa1306250:CDS | 50.0% | |
| CGAGACTTCAAGGCACAGTT+GGG | + | chr8_4:1042962-1042981 | Msa1306250:CDS | 50.0% | |
| GAGACTTCAAGGCACAGTTG+GGG | + | chr8_4:1042963-1042982 | Msa1306250:CDS | 50.0% | |
| AGACTTCAAGGCACAGTTGG+GGG | + | chr8_4:1042964-1042983 | Msa1306250:CDS | 50.0% | |
| !! | GCTCCAGAAGGGTATCATAC+AGG | - | chr8_4:1043021-1043040 | None:intergenic | 50.0% |
| CTTTCGCTCCACGTGATCAA+TGG | - | chr8_4:1043116-1043135 | None:intergenic | 50.0% | |
| CAAGAAGTTCGCTGGGACAT+TGG | + | chr8_4:1043156-1043175 | Msa1306250:CDS | 50.0% | |
| TTCGCTGGGACATTGGATCA+AGG | + | chr8_4:1043163-1043182 | Msa1306250:CDS | 50.0% | |
| ! | CCCCGTGAGTTTAGCTCAGT+TGG | - | chr8_4:1038286-1038305 | None:intergenic | 55.0% |
| AATCGCAAACGGCAAGCAGC+AGG | + | chr8_4:1039118-1039137 | Msa1306250:intron | 55.0% | |
| ! | AAGGAACGGTACCGGGATTG+CGG | - | chr8_4:1039404-1039423 | None:intergenic | 55.0% |
| TGCTCTGCGCATGAAAGAGC+AGG | + | chr8_4:1042169-1042188 | Msa1306250:CDS | 55.0% | |
| CAAACCTCACCGACCTTCTC+AGG | + | chr8_4:1042198-1042217 | Msa1306250:CDS | 55.0% | |
| TGAGGCAGCGAATTGAGGCA+AGG | + | chr8_4:1042420-1042439 | Msa1306250:CDS | 55.0% | |
| CAGCTGTTCTTGCAGCTGTG+AGG | - | chr8_4:1042616-1042635 | None:intergenic | 55.0% | |
| ATGGCACCTTGTTGAGCTGG+TGG | - | chr8_4:1042656-1042675 | None:intergenic | 55.0% | |
| CGAGCTTCCCATTGATCACG+TGG | + | chr8_4:1043105-1043124 | Msa1306250:CDS | 55.0% | |
| GGGACATTGGATCAAGGTGC+TGG | + | chr8_4:1043169-1043188 | Msa1306250:CDS | 55.0% | |
| CACAGTCAGCAACTGCCACG+TGG | + | chr8_4:1038798-1038817 | Msa1306250:intron | 60.0% | |
| AATCGCCGTTGCGGCCGTTA+CGG | - | chr8_4:1039331-1039350 | None:intergenic | 60.0% | |
| GCTGTAGGTCTCAGCATGCC+TGG | + | chr8_4:1041489-1041508 | Msa1306250:intron | 60.0% | |
| CTTGCCTGAGAAGGTCGGTG+AGG | - | chr8_4:1042205-1042224 | None:intergenic | 60.0% | |
| GGAGTCCGTAACGGCCGCAA+CGG | + | chr8_4:1039323-1039342 | Msa1306250:intron | 65.0% | |
| TAGGCCCGCTTGCCCTAAGC+TGG | - | chr8_4:1040513-1040532 | None:intergenic | 65.0% | |
| GTCGGTCACGTGTCCAGCGA+AGG | + | chr8_4:1041036-1041055 | Msa1306250:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 1038056 | 1043315 | 1038056 | ID=Msa1306250;Name=Msa1306250 |
| chr8_4 | mRNA | 1038056 | 1043315 | 1038056 | ID=Msa1306250-mRNA-1;Parent=Msa1306250;Name=Msa1306250-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|0.5|1|1|2|0|430 |
| chr8_4 | exon | 1038056 | 1038061 | 1038056 | ID=Msa1306250-mRNA-1:exon:179;Parent=Msa1306250-mRNA-1 |
| chr8_4 | exon | 1042029 | 1043315 | 1042029 | ID=Msa1306250-mRNA-1:exon:180;Parent=Msa1306250-mRNA-1 |
| chr8_4 | CDS | 1038056 | 1038061 | 1038056 | ID=Msa1306250-mRNA-1:cds;Parent=Msa1306250-mRNA-1 |
| chr8_4 | CDS | 1042029 | 1043315 | 1042029 | ID=Msa1306250-mRNA-1:cds;Parent=Msa1306250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
