Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980890 | XP_013451571.1 | 98.361 | 305 | 5 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980890 | sp|Q9SRV7|SY131_ARATH | 74.183 | 306 | 78 | 1 | 1 | 305 | 1 | 306 | 1.95e-156 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980890 | I3T5G8 | 98.361 | 305 | 5 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006080 | Msa0980890 | 0.831459 | 1.649456e-55 | -8.615850e-47 |
| Msa0007810 | Msa0980890 | -0.816138 | 6.455191e-52 | -8.615850e-47 |
| Msa0017300 | Msa0980890 | -0.808542 | 2.943129e-50 | -8.615850e-47 |
| Msa0037180 | Msa0980890 | 0.850962 | 1.209150e-60 | -8.615850e-47 |
| Msa0039750 | Msa0980890 | 0.817745 | 2.811621e-52 | -8.615850e-47 |
| Msa0040860 | Msa0980890 | -0.806588 | 7.647140e-50 | -8.615850e-47 |
| Msa0056230 | Msa0980890 | -0.813710 | 2.229624e-51 | -8.615850e-47 |
| Msa0081290 | Msa0980890 | -0.808076 | 3.699609e-50 | -8.615850e-47 |
| Msa0092220 | Msa0980890 | 0.838383 | 2.970570e-57 | -8.615850e-47 |
| Msa0103830 | Msa0980890 | 0.804977 | 1.667250e-49 | -8.615850e-47 |
| Msa0610700 | Msa0980890 | -0.808514 | 2.983596e-50 | -8.615850e-47 |
| Msa0616890 | Msa0980890 | -0.810052 | 1.396126e-50 | -8.615850e-47 |
| Msa0620080 | Msa0980890 | 0.816066 | 6.698666e-52 | -8.615850e-47 |
| Msa0659020 | Msa0980890 | -0.820061 | 8.368005e-53 | -8.615850e-47 |
| Msa0660150 | Msa0980890 | 0.831256 | 1.850237e-55 | -8.615850e-47 |
| Msa0701090 | Msa0980890 | -0.810297 | 1.236274e-50 | -8.615850e-47 |
| Msa0701800 | Msa0980890 | -0.812211 | 4.750874e-51 | -8.615850e-47 |
| Msa0702690 | Msa0980890 | -0.820387 | 7.046982e-53 | -8.615850e-47 |
| Msa0707360 | Msa0980890 | 0.814211 | 1.729674e-51 | -8.615850e-47 |
| Msa0721930 | Msa0980890 | 0.802300 | 5.990549e-49 | -8.615850e-47 |
| Msa0733240 | Msa0980890 | -0.810937 | 8.989552e-51 | -8.615850e-47 |
| Msa0745140 | Msa0980890 | 0.825407 | 4.768240e-54 | -8.615850e-47 |
| Msa0756670 | Msa0980890 | -0.813114 | 3.014588e-51 | -8.615850e-47 |
| Msa0762930 | Msa0980890 | 0.804167 | 2.459553e-49 | -8.615850e-47 |
| Msa0769910 | Msa0980890 | -0.814065 | 1.862176e-51 | -8.615850e-47 |
| Msa0776640 | Msa0980890 | 0.827088 | 1.897294e-54 | -8.615850e-47 |
| Msa0805390 | Msa0980890 | 0.801805 | 7.572548e-49 | -8.615850e-47 |
| Msa0807870 | Msa0980890 | -0.830614 | 2.658744e-55 | -8.615850e-47 |
| Msa0825920 | Msa0980890 | 0.827154 | 1.829830e-54 | -8.615850e-47 |
| Msa0836060 | Msa0980890 | -0.802951 | 4.395981e-49 | -8.615850e-47 |
| Msa0173600 | Msa0980890 | -0.814281 | 1.668569e-51 | -8.615850e-47 |
| Msa0174060 | Msa0980890 | -0.812330 | 4.475726e-51 | -8.615850e-47 |
| Msa0177320 | Msa0980890 | 0.843275 | 1.548347e-58 | -8.615850e-47 |
| Msa0211460 | Msa0980890 | 0.813958 | 1.966512e-51 | -8.615850e-47 |
| Msa0216150 | Msa0980890 | -0.821641 | 3.624415e-53 | -8.615850e-47 |
| Msa0225070 | Msa0980890 | -0.834225 | 3.389924e-56 | -8.615850e-47 |
| Msa0364910 | Msa0980890 | -0.808617 | 2.836632e-50 | -8.615850e-47 |
| Msa0378310 | Msa0980890 | -0.800894 | 1.163284e-48 | -8.615850e-47 |
| Msa0385030 | Msa0980890 | 0.807359 | 5.254180e-50 | -8.615850e-47 |
| Msa0386880 | Msa0980890 | 0.811569 | 6.557742e-51 | -8.615850e-47 |
| Msa0403740 | Msa0980890 | -0.819938 | 8.926764e-53 | -8.615850e-47 |
| Msa0412580 | Msa0980890 | -0.816654 | 4.946503e-52 | -8.615850e-47 |
| Msa0438680 | Msa0980890 | -0.805785 | 1.128797e-49 | -8.615850e-47 |
| Msa0456450 | Msa0980890 | -0.817490 | 3.209429e-52 | -8.615850e-47 |
| Msa0457070 | Msa0980890 | -0.832381 | 9.765493e-56 | -8.615850e-47 |
| Msa0980890 | Msa0982730 | 0.807415 | 5.110918e-50 | -8.615850e-47 |
| Msa0980890 | Msa1002970 | -0.815129 | 1.083077e-51 | -8.615850e-47 |
| Msa0980890 | Msa1014550 | -0.847344 | 1.227391e-59 | -8.615850e-47 |
| Msa0980890 | Msa1052000 | 0.806807 | 6.876380e-50 | -8.615850e-47 |
| Msa0980890 | Msa1055520 | -0.829976 | 3.808223e-55 | -8.615850e-47 |
| Msa0980890 | Msa1070630 | -0.808961 | 2.394656e-50 | -8.615850e-47 |
| Msa0980890 | Msa1078590 | -0.822617 | 2.152287e-53 | -8.615850e-47 |
| Msa0980890 | Msa1078760 | -0.825134 | 5.531921e-54 | -8.615850e-47 |
| Msa0980890 | Msa1078890 | 0.801449 | 8.959423e-49 | -8.615850e-47 |
| Msa0980890 | Msa1088400 | -0.810305 | 1.231630e-50 | -8.615850e-47 |
| Msa0980890 | Msa1093190 | -0.852486 | 4.472373e-61 | -8.615850e-47 |
| Msa0980890 | Msa1112210 | -0.801092 | 1.059671e-48 | -8.615850e-47 |
| Msa0980890 | Msa1121720 | -0.805144 | 1.538615e-49 | -8.615850e-47 |
| Msa0980890 | Msa1165460 | 0.818406 | 1.993251e-52 | -8.615850e-47 |
| Msa0980890 | Msa1169590 | -0.821611 | 3.683350e-53 | -8.615850e-47 |
| Msa0980890 | Msa1197720 | 0.813581 | 2.381231e-51 | -8.615850e-47 |
| Msa0980890 | Msa1205270 | -0.856887 | 2.373113e-62 | -8.615850e-47 |
| Msa0980890 | Msa1213470 | -0.813102 | 3.033878e-51 | -8.615850e-47 |
| Msa0980890 | Msa1236190 | -0.806105 | 9.668705e-50 | -8.615850e-47 |
| Msa0980890 | Msa1251410 | 0.811085 | 8.350837e-51 | -8.615850e-47 |
| Msa0980890 | Msa1266120 | -0.807958 | 3.918785e-50 | -8.615850e-47 |
| Msa0980890 | Msa1281780 | 0.800300 | 1.537412e-48 | -8.615850e-47 |
| Msa0980890 | Msa1297220 | -0.844233 | 8.583991e-59 | -8.615850e-47 |
| Msa0980890 | Msa1300370 | -0.813334 | 2.697687e-51 | -8.615850e-47 |
| Msa0980890 | Msa1306250 | 0.829049 | 6.398594e-55 | -8.615850e-47 |
| Msa0980890 | Msa1323260 | -0.846698 | 1.844779e-59 | -8.615850e-47 |
| Msa0980890 | Msa1342360 | -0.816504 | 5.346176e-52 | -8.615850e-47 |
| Msa0980890 | Msa1343450 | -0.829608 | 4.680261e-55 | -8.615850e-47 |
| Msa0980890 | Msa1352600 | -0.805719 | 1.165221e-49 | -8.615850e-47 |
| Msa0980890 | Msa1356100 | -0.805311 | 1.418931e-49 | -8.615850e-47 |
| Msa0980890 | Msa1361980 | 0.809529 | 1.809305e-50 | -8.615850e-47 |
| Msa0980890 | Msa1363280 | -0.807237 | 5.574966e-50 | -8.615850e-47 |
| Msa0980890 | Msa1384410 | -0.809187 | 2.141809e-50 | -8.615850e-47 |
| Msa0980890 | Msa1412740 | -0.803552 | 3.300785e-49 | -8.615850e-47 |
| Msa0980890 | Msa1414780 | -0.800173 | 1.631759e-48 | -8.615850e-47 |
| Msa0980890 | Msa1449690 | -0.802436 | 5.615335e-49 | -8.615850e-47 |
| Msa0980890 | Msa1457770 | 0.810527 | 1.102812e-50 | -8.615850e-47 |
| Msa0980890 | Msa1459130 | -0.804290 | 2.319288e-49 | -8.615850e-47 |
| Msa0256540 | Msa0980890 | 0.825953 | 3.538205e-54 | -8.615850e-47 |
| Msa0266140 | Msa0980890 | -0.830319 | 3.140150e-55 | -8.615850e-47 |
| Msa0267450 | Msa0980890 | -0.808234 | 3.423988e-50 | -8.615850e-47 |
| Msa0267510 | Msa0980890 | -0.811948 | 5.423954e-51 | -8.615850e-47 |
| Msa0270730 | Msa0980890 | -0.804525 | 2.072070e-49 | -8.615850e-47 |
| Msa0290800 | Msa0980890 | 0.832005 | 1.209671e-55 | -8.615850e-47 |
| Msa0304060 | Msa0980890 | -0.814093 | 1.836075e-51 | -8.615850e-47 |
| Msa0326170 | Msa0980890 | -0.807596 | 4.679290e-50 | -8.615850e-47 |
| Msa0328870 | Msa0980890 | 0.837825 | 4.135189e-57 | -8.615850e-47 |
| Msa0334320 | Msa0980890 | 0.823277 | 1.510767e-53 | -8.615850e-47 |
| Msa0364030 | Msa0980890 | -0.819687 | 1.018761e-52 | -8.615850e-47 |
| Msa0521530 | Msa0980890 | 0.803803 | 2.928025e-49 | -8.615850e-47 |
| Msa0563440 | Msa0980890 | 0.819476 | 1.138175e-52 | -8.615850e-47 |
| Msa0582270 | Msa0980890 | -0.801905 | 7.222749e-49 | -8.615850e-47 |
| Msa0852090 | Msa0980890 | -0.800173 | 1.631759e-48 | -8.615850e-47 |
| Msa0865420 | Msa0980890 | 0.821590 | 3.723588e-53 | -8.615850e-47 |
| Msa0868050 | Msa0980890 | -0.810723 | 1.000450e-50 | -8.615850e-47 |
| Msa0932140 | Msa0980890 | 0.816106 | 6.561702e-52 | -8.615850e-47 |
| Msa0967900 | Msa0980890 | -0.828614 | 8.149761e-55 | -8.615850e-47 |
| Msa0970270 | Msa0980890 | 0.813626 | 2.326753e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980890 | MtrunA17_Chr6g0461261 | 98.361 | 305 | 5 | 0 | 1 | 305 | 1 | 305 | 0.0 | 613 |
| Msa0980890 | MtrunA17_Chr2g0322801 | 62.500 | 304 | 109 | 3 | 1 | 299 | 1 | 304 | 1.45e-124 | 358 |
| Msa0980890 | MtrunA17_Chr4g0048121 | 48.944 | 284 | 137 | 2 | 1 | 280 | 1 | 280 | 1.38e-91 | 274 |
| Msa0980890 | MtrunA17_Chr2g0281201 | 49.187 | 246 | 125 | 0 | 51 | 296 | 4 | 249 | 1.11e-87 | 263 |
| Msa0980890 | MtrunA17_Chr1g0177131 | 47.761 | 268 | 140 | 0 | 32 | 299 | 43 | 310 | 2.77e-80 | 246 |
| Msa0980890 | MtrunA17_Chr1g0177121 | 44.444 | 288 | 149 | 3 | 1 | 279 | 1 | 286 | 2.97e-79 | 243 |
| Msa0980890 | MtrunA17_Chr5g0398891 | 41.216 | 296 | 156 | 2 | 1 | 278 | 1 | 296 | 1.95e-74 | 231 |
| Msa0980890 | MtrunA17_Chr7g0267551 | 44.534 | 247 | 137 | 0 | 34 | 280 | 28 | 274 | 2.29e-70 | 219 |
| Msa0980890 | MtrunA17_Chr5g0404401 | 32.517 | 286 | 174 | 4 | 1 | 277 | 1 | 276 | 1.27e-42 | 148 |
| Msa0980890 | MtrunA17_Chr2g0322811 | 31.000 | 100 | 58 | 2 | 206 | 299 | 80 | 174 | 8.88e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0980890 | AT3G03800.2 | 74.183 | 306 | 78 | 1 | 1 | 305 | 1 | 306 | 4.22e-158 | 443 |
| Msa0980890 | AT3G03800.1 | 74.183 | 306 | 78 | 1 | 1 | 305 | 1 | 306 | 4.22e-158 | 443 |
| Msa0980890 | AT5G08080.1 | 75.329 | 304 | 71 | 2 | 1 | 302 | 1 | 302 | 4.50e-142 | 403 |
| Msa0980890 | AT5G08080.4 | 75.329 | 304 | 71 | 2 | 1 | 302 | 1 | 302 | 4.50e-142 | 403 |
| Msa0980890 | AT5G08080.3 | 71.429 | 315 | 75 | 4 | 1 | 302 | 1 | 313 | 2.84e-139 | 396 |
| Msa0980890 | AT4G03330.1 | 48.944 | 284 | 139 | 2 | 1 | 280 | 1 | 282 | 3.32e-89 | 268 |
| Msa0980890 | AT3G11820.1 | 48.772 | 285 | 145 | 1 | 16 | 299 | 25 | 309 | 2.08e-87 | 265 |
| Msa0980890 | AT1G61290.1 | 43.750 | 304 | 161 | 3 | 1 | 300 | 1 | 298 | 8.14e-87 | 262 |
| Msa0980890 | AT1G61290.2 | 43.750 | 304 | 161 | 3 | 1 | 300 | 1 | 298 | 8.14e-87 | 262 |
| Msa0980890 | AT1G11250.1 | 47.857 | 280 | 140 | 2 | 1 | 280 | 1 | 274 | 8.63e-87 | 262 |
| Msa0980890 | AT5G08080.5 | 72.772 | 202 | 51 | 2 | 1 | 200 | 1 | 200 | 9.88e-87 | 259 |
| Msa0980890 | AT5G08080.2 | 72.772 | 202 | 51 | 2 | 1 | 200 | 1 | 200 | 9.88e-87 | 259 |
| Msa0980890 | AT3G11820.2 | 49.632 | 272 | 137 | 0 | 28 | 299 | 7 | 278 | 1.34e-85 | 259 |
| Msa0980890 | AT3G52400.1 | 47.078 | 308 | 154 | 2 | 1 | 299 | 1 | 308 | 1.04e-80 | 248 |
| Msa0980890 | AT1G08560.1 | 39.310 | 290 | 160 | 5 | 1 | 278 | 1 | 286 | 5.12e-65 | 207 |
| Msa0980890 | AT2G18260.2 | 33.441 | 311 | 183 | 8 | 1 | 294 | 1 | 304 | 5.31e-50 | 168 |
| Msa0980890 | AT2G18260.1 | 33.441 | 311 | 183 | 8 | 1 | 294 | 1 | 304 | 5.31e-50 | 168 |
Find 76 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAGACATATTTGAATATT+TGG | 0.163032 | 6_4:-19444874 | None:intergenic |
| CATGTCTTTGCAGACATTTA+TGG | 0.204217 | 6_4:+19444075 | Msa0980890:intron |
| TACATTAATCTCTCTTTAAA+AGG | 0.208718 | 6_4:-19444894 | None:intergenic |
| GGAGAAGATGGCTGAATTTC+AGG | 0.226938 | 6_4:+19443061 | Msa0980890:CDS |
| CTTGGATAGTTTCTTCAAAA+AGG | 0.237559 | 6_4:+19441641 | Msa0980890:CDS |
| CAAACCATGGGTTACCAAAA+AGG | 0.240236 | 6_4:+19444741 | Msa0980890:CDS |
| TGCAAAGAAACTCAAGAAAA+TGG | 0.259809 | 6_4:+19444659 | Msa0980890:CDS |
| GACATTGAGTTGGGAGAATA+TGG | 0.285392 | 6_4:+19441597 | Msa0980890:CDS |
| GTTGAGAGACGTGTATTTAC+AGG | 0.293815 | 6_4:+19443210 | Msa0980890:CDS |
| GGAGAATATGGAAGGAATTC+AGG | 0.293975 | 6_4:+19441609 | Msa0980890:CDS |
| CTTGTTCCTGAATAGCCTTC+TGG | 0.311534 | 6_4:-19443495 | None:intergenic |
| ATCATTCATTGTTGGTGAAA+AGG | 0.353109 | 6_4:-19440076 | None:intergenic |
| CTTCATGGATGGCTTCTCTC+AGG | 0.356838 | 6_4:-19443173 | None:intergenic |
| TGTCGCAGAATTTGGCTAAT+AGG | 0.360483 | 6_4:+19442474 | Msa0980890:intron |
| TTTGTCTAGCTCTTCAACTT+TGG | 0.365108 | 6_4:-19442374 | None:intergenic |
| ACCCTTCATGGCGGGAGCTT+TGG | 0.365120 | 6_4:-19442035 | None:intergenic |
| GAAAATTTGTTCACTGTCTC+CGG | 0.366933 | 6_4:-19443473 | None:intergenic |
| CAACCTCTCGATATTCTTCA+TGG | 0.373177 | 6_4:-19443188 | None:intergenic |
| AGGGTGCATAGTTTACTAAT+TGG | 0.375776 | 6_4:+19444761 | Msa0980890:exon |
| CAGAAACCTGCTTGTGGAAA+AGG | 0.378140 | 6_4:+19442497 | Msa0980890:CDS |
| TTACCTGGAGCTTTCTCAAA+AGG | 0.414308 | 6_4:-19441885 | None:intergenic |
| TCATTCATTGTTGGTGAAAA+GGG | 0.437174 | 6_4:-19440075 | None:intergenic |
| TCATAGTAACTAACCCTTCA+TGG | 0.437317 | 6_4:-19442047 | None:intergenic |
| TCACAGCCTTGGACTCCTCA+TGG | 0.443540 | 6_4:-19442012 | None:intergenic |
| GGGAGCTTTGGTCACAGCCT+TGG | 0.448244 | 6_4:-19442023 | None:intergenic |
| AAAGAGAGAGAATTTGAAGC+TGG | 0.459053 | 6_4:-19440026 | None:intergenic |
| ATTAAGCTTCAAACAAACAT+TGG | 0.470210 | 6_4:+19444850 | Msa0980890:three_prime_UTR |
| GTTAGAAGATCATTCATTGT+TGG | 0.476131 | 6_4:-19440084 | None:intergenic |
| TTGTCGTTGCTGTTCTTGAC+CGG | 0.478266 | 6_4:-19442532 | None:intergenic |
| ATCCCTCGTGGTCGTGGAGG+TGG | 0.479586 | 6_4:+19441573 | Msa0980890:CDS |
| TTCATGGATGGCTTCTCTCA+GGG | 0.480734 | 6_4:-19443172 | None:intergenic |
| TTTGAGATCCCTCGTGGTCG+TGG | 0.486500 | 6_4:+19441567 | Msa0980890:CDS |
| CACAGCCTTGGACTCCTCAT+GGG | 0.487170 | 6_4:-19442011 | None:intergenic |
| GGAAGGAATTCAGGAGAGCT+TGG | 0.498053 | 6_4:+19441618 | Msa0980890:CDS |
| CTATTAATACTTAATTGTTG+TGG | 0.498958 | 6_4:-19444797 | None:intergenic |
| GTCGTTCTTGAATTTCTGCA+AGG | 0.506487 | 6_4:-19443927 | None:intergenic |
| AAAGAAACTGAAGGAGAAGA+TGG | 0.512507 | 6_4:+19443049 | Msa0980890:CDS |
| CTCTCGATATTCTTCATGGA+TGG | 0.516536 | 6_4:-19443184 | None:intergenic |
| TGCAGCTATAAAGCAGAGAA+TGG | 0.520725 | 6_4:+19442306 | Msa0980890:intron |
| AGGCAATAATTCCCTCCAAA+AGG | 0.521264 | 6_4:+19444627 | Msa0980890:CDS |
| GACCAAAGCTCCCGCCATGA+AGG | 0.521556 | 6_4:+19442033 | Msa0980890:CDS |
| TGGAGGTGGTGACATTGAGT+TGG | 0.525299 | 6_4:+19441587 | Msa0980890:CDS |
| TCAGGAACAAGGACGAGGCC+AGG | 0.529870 | 6_4:+19443507 | Msa0980890:CDS |
| TGTTTCTGTCATCAAACCAT+GGG | 0.533401 | 6_4:+19444729 | Msa0980890:CDS |
| TCGTTCTTGAATTTCTGCAA+GGG | 0.536427 | 6_4:-19443926 | None:intergenic |
| ATTGACAGATTAATTGAGAC+CGG | 0.539615 | 6_4:+19443454 | Msa0980890:CDS |
| GAATTCAGGAGAGCTTGGCT+TGG | 0.539903 | 6_4:+19441623 | Msa0980890:CDS |
| AGTAACTAACCCTTCATGGC+GGG | 0.541178 | 6_4:-19442043 | None:intergenic |
| GAAAAGGATCAGCTGTTGAC+CGG | 0.548471 | 6_4:+19442513 | Msa0980890:CDS |
| TTGTTTCTGTCATCAAACCA+TGG | 0.549299 | 6_4:+19444728 | Msa0980890:CDS |
| GAAACTGCTTGATTTACAGC+AGG | 0.549773 | 6_4:+19443975 | Msa0980890:CDS |
| TTCATTGTTGGTGAAAAGGG+TGG | 0.553741 | 6_4:-19440072 | None:intergenic |
| AGTTGAAGAGCTAGACAAAG+AGG | 0.554537 | 6_4:+19442378 | Msa0980890:CDS |
| CAGAAGGCTATTCAGGAACA+AGG | 0.557963 | 6_4:+19443496 | Msa0980890:CDS |
| ACCAAAGCTCCCGCCATGAA+GGG | 0.567202 | 6_4:+19442034 | Msa0980890:CDS |
| AACAATGAGAAGTATCATGA+TGG | 0.567362 | 6_4:-19444692 | None:intergenic |
| GGAGGTGGTGACATTGAGTT+GGG | 0.570184 | 6_4:+19441588 | Msa0980890:CDS |
| GCTTGACAACATAGAATCAC+AGG | 0.577422 | 6_4:+19444132 | Msa0980890:CDS |
| GGATGCCCATGAGGAGTCCA+AGG | 0.583800 | 6_4:+19442006 | Msa0980890:intron |
| AACGGGCGCAAGAGCTGATG+AGG | 0.586140 | 6_4:+19443344 | Msa0980890:CDS |
| ATTTGAAGCTGGTTAAGACC+TGG | 0.587356 | 6_4:-19440015 | None:intergenic |
| GGAAAATTGAAGAATGTGAG+AGG | 0.589464 | 6_4:-19440051 | None:intergenic |
| AACAATGAATGATCTTCTAA+CGG | 0.594528 | 6_4:+19440086 | Msa0980890:exon |
| TTGAGTTGGGAGAATATGGA+AGG | 0.601130 | 6_4:+19441601 | Msa0980890:CDS |
| AATAGGCAGAAACCTGCTTG+TGG | 0.617915 | 6_4:+19442491 | Msa0980890:CDS |
| GGGCGCAAGAGCTGATGAGG+AGG | 0.623736 | 6_4:+19443347 | Msa0980890:CDS |
| GCTATTCAGGAACAAGGACG+AGG | 0.633215 | 6_4:+19443502 | Msa0980890:CDS |
| GAGATCCCTCGTGGTCGTGG+AGG | 0.639075 | 6_4:+19441570 | Msa0980890:CDS |
| GCAGTAGATCATGTGCAGCA+AGG | 0.646558 | 6_4:+19444607 | Msa0980890:CDS |
| CTTTATGCAGGATGCCCATG+AGG | 0.651012 | 6_4:+19441997 | Msa0980890:intron |
| TCACCACCTCCACGACCACG+AGG | 0.693877 | 6_4:-19441576 | None:intergenic |
| GAATCGTTTGAGATCCCTCG+TGG | 0.704785 | 6_4:+19441561 | Msa0980890:CDS |
| CATCCATGAAGAATATCGAG+AGG | 0.708099 | 6_4:+19443185 | Msa0980890:CDS |
| GCAGTGTTAGTTGATGCACA+AGG | 0.712002 | 6_4:+19444103 | Msa0980890:CDS |
| TAGTAACTAACCCTTCATGG+CGG | 0.717312 | 6_4:-19442044 | None:intergenic |
| CACCACCTCCACGACCACGA+GGG | 0.725442 | 6_4:-19441575 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCAAACAAAAATTAAATAA+TGG | + | chr6_4:19440961-19440980 | Msa0980890:intron | 10.0% |
| !!! | AAATTATTTTGTATAATTTG+CGG | + | chr6_4:19441744-19441763 | Msa0980890:intron | 10.0% |
| !!! | TAAAAAATTTCTAAGAAATA+AGG | - | chr6_4:19443563-19443582 | None:intergenic | 10.0% |
| !!! | TTAGTATTGTTTTTTGTTTA+TGG | + | chr6_4:19440657-19440676 | Msa0980890:intron | 15.0% |
| !!! | AACAAAAATTAAATAATGGA+TGG | + | chr6_4:19440965-19440984 | Msa0980890:intron | 15.0% |
| !!! | TTAATTTGATTTTCTTTTTC+AGG | + | chr6_4:19441539-19441558 | Msa0980890:intron | 15.0% |
| !! | TATGATAAAAGAAAAATCAT+CGG | + | chr6_4:19442145-19442164 | Msa0980890:intron | 15.0% |
| !! | AACTGATTATATAGTAAATT+TGG | + | chr6_4:19442788-19442807 | Msa0980890:intron | 15.0% |
| !!! | ATTGTTATTATGATCATAAT+TGG | + | chr6_4:19442959-19442978 | Msa0980890:intron | 15.0% |
| !! | ATTATAGAATACAAAAAAGA+AGG | - | chr6_4:19443013-19443032 | None:intergenic | 15.0% |
| !!! | TTTACTTGAATTTTCATTAA+TGG | + | chr6_4:19443376-19443395 | Msa0980890:intron | 15.0% |
| !!! | TCTCTTAAAATTTTAAAAAG+TGG | - | chr6_4:19443718-19443737 | None:intergenic | 15.0% |
| !!! | TGATTCAAGTTTTTTTTTTG+TGG | + | chr6_4:19440166-19440185 | Msa0980890:intron | 20.0% |
| !!! | GATTCAAGTTTTTTTTTTGT+GGG | + | chr6_4:19440167-19440186 | Msa0980890:intron | 20.0% |
| !!! | TTTTTTTTGTTATGCTTGTT+TGG | + | chr6_4:19440278-19440297 | Msa0980890:intron | 20.0% |
| !!! | AATTTGGTGAATTTGTTTTT+TGG | + | chr6_4:19440322-19440341 | Msa0980890:intron | 20.0% |
| !!! | AATTATAATAAGTATTGCCT+TGG | + | chr6_4:19440911-19440930 | Msa0980890:intron | 20.0% |
| !!! | GAACTTTTTAAATACCAAAA+AGG | - | chr6_4:19441075-19441094 | None:intergenic | 20.0% |
| !! | TTTGGTATTTAAAAAGTTCA+TGG | + | chr6_4:19441076-19441095 | Msa0980890:intron | 20.0% |
| !!! | AACAATATTCTAACAGTTTT+AGG | + | chr6_4:19441304-19441323 | Msa0980890:intron | 20.0% |
| !! | TTATGTTGATCATAAACAAA+AGG | - | chr6_4:19442125-19442144 | None:intergenic | 20.0% |
| !! | TTAAACGATAGATAAAACAA+TGG | - | chr6_4:19442571-19442590 | None:intergenic | 20.0% |
| !!! | AGTAAATTTGGTAATTCAAA+AGG | + | chr6_4:19442800-19442819 | Msa0980890:intron | 20.0% |
| !!! | TAACAATTTCATGTTTTCTA+TGG | + | chr6_4:19443304-19443323 | Msa0980890:intron | 20.0% |
| !!! | AAATTTCTAAGAAATAAGGA+GGG | - | chr6_4:19443559-19443578 | None:intergenic | 20.0% |
| !!! | AAAATTTCTAAGAAATAAGG+AGG | - | chr6_4:19443560-19443579 | None:intergenic | 20.0% |
| !! | ATTAAAAATATACCTTTGCA+AGG | + | chr6_4:19443860-19443879 | Msa0980890:intron | 20.0% |
| !! | GAGTTATATTATGTAGATAA+TGG | + | chr6_4:19443900-19443919 | Msa0980890:intron | 20.0% |
| !! | ACATGAAAGTTATAATCATT+AGG | - | chr6_4:19444060-19444079 | None:intergenic | 20.0% |
| !! | AATTTCAAATGTCAACTATT+TGG | + | chr6_4:19444344-19444363 | Msa0980890:intron | 20.0% |
| !! | CTATTAATACTTAATTGTTG+TGG | - | chr6_4:19444800-19444819 | None:intergenic | 20.0% |
| !!! | AAAAAGAATGGATTATGAAT+AGG | - | chr6_4:19444824-19444843 | None:intergenic | 20.0% |
| !! | CTTAATAATCACAAAAAGAA+TGG | - | chr6_4:19444836-19444855 | None:intergenic | 20.0% |
| !! | TACATTAATCTCTCTTTAAA+AGG | - | chr6_4:19444897-19444916 | None:intergenic | 20.0% |
| ! | AACAATGAATGATCTTCTAA+CGG | + | chr6_4:19440086-19440105 | Msa0980890:exon | 25.0% |
| !! | AGATCTAGGTTTTTGAATAA+TGG | + | chr6_4:19440197-19440216 | Msa0980890:intron | 25.0% |
| !! | GATCTAGGTTTTTGAATAAT+GGG | + | chr6_4:19440198-19440217 | Msa0980890:intron | 25.0% |
| !!! | TTTTTGTGTTTTGTGTTGTT+GGG | + | chr6_4:19440230-19440249 | Msa0980890:intron | 25.0% |
| !!! | TGTTTAGATTTGGAATGTTT+TGG | + | chr6_4:19440254-19440273 | Msa0980890:intron | 25.0% |
| !!! | GTTTAGATTTGGAATGTTTT+GGG | + | chr6_4:19440255-19440274 | Msa0980890:intron | 25.0% |
| !! | TTGTAGTTGTATTTAGGTTA+TGG | + | chr6_4:19440391-19440410 | Msa0980890:intron | 25.0% |
| !! | ATTTAGGTTATGGATAATGT+TGG | + | chr6_4:19440401-19440420 | Msa0980890:intron | 25.0% |
| !! | TAATGTTGGTTGATATTTCA+TGG | + | chr6_4:19440415-19440434 | Msa0980890:intron | 25.0% |
| !!! | TTTTGTTCTGAAATTGTTGT+TGG | + | chr6_4:19440460-19440479 | Msa0980890:intron | 25.0% |
| !!! | TTGTTGTTGGTTTTTGTTTA+AGG | + | chr6_4:19440473-19440492 | Msa0980890:intron | 25.0% |
| ! | TGATTTATAGAAAAAGCTAG+AGG | + | chr6_4:19440880-19440899 | Msa0980890:intron | 25.0% |
| ! | GAAATTAAGAACTTCAAAGA+CGG | - | chr6_4:19441116-19441135 | None:intergenic | 25.0% |
| !! | CCATTTTCTCAAATTATTAC+CGG | + | chr6_4:19441192-19441211 | Msa0980890:intron | 25.0% |
| !!! | TTTTGATTTTTGAAGAGTAC+AGG | + | chr6_4:19441433-19441452 | Msa0980890:intron | 25.0% |
| !!! | TTTGATTTTTGAAGAGTACA+GGG | + | chr6_4:19441434-19441453 | Msa0980890:intron | 25.0% |
| ! | CTATTGAACAATTAATCGAT+AGG | - | chr6_4:19441827-19441846 | None:intergenic | 25.0% |
| !! | CTATCGATTAATTGTTCAAT+AGG | + | chr6_4:19441825-19441844 | Msa0980890:intron | 25.0% |
| ! | GAAAGAATTACATGAAAGAA+GGG | - | chr6_4:19442180-19442199 | None:intergenic | 25.0% |
| !!! | GATCTCTACTAAAAGTATTT+CGG | + | chr6_4:19442404-19442423 | Msa0980890:intron | 25.0% |
| ! | TGTACTGAAAGAAAGAAAAT+TGG | + | chr6_4:19442858-19442877 | Msa0980890:intron | 25.0% |
| ! | TCTTAATTAAGTTATCCCAT+TGG | + | chr6_4:19443260-19443279 | Msa0980890:intron | 25.0% |
| !! | AATTTCTAAGAAATAAGGAG+GGG | - | chr6_4:19443558-19443577 | None:intergenic | 25.0% |
| ! | AGAAAGTAATGTTGTATACA+AGG | + | chr6_4:19443582-19443601 | Msa0980890:intron | 25.0% |
| ! | GAAAGTAATGTTGTATACAA+GGG | + | chr6_4:19443583-19443602 | Msa0980890:intron | 25.0% |
| !!! | TAAGTTGATTTTGACATTCA+AGG | + | chr6_4:19443629-19443648 | Msa0980890:intron | 25.0% |
| ! | AGTTGAATAAGAAATTGAGA+AGG | - | chr6_4:19443803-19443822 | None:intergenic | 25.0% |
| ! | TTCTCAATTTCTTATTCAAC+TGG | + | chr6_4:19443802-19443821 | Msa0980890:intron | 25.0% |
| ! | TGCATGAAAGTTTAATTGAA+AGG | - | chr6_4:19444013-19444032 | None:intergenic | 25.0% |
| !!! | ATATGAGTAAAGTTCTAAAC+TGG | + | chr6_4:19444202-19444221 | Msa0980890:intron | 25.0% |
| ! | AACTCATCAATCAAACTAAT+TGG | - | chr6_4:19444558-19444577 | None:intergenic | 25.0% |
| ! | TTACATTTGTGATGAAATTC+AGG | + | chr6_4:19444576-19444595 | Msa0980890:intron | 25.0% |
| ! | ATTAAGCTTCAAACAAACAT+TGG | + | chr6_4:19444850-19444869 | Msa0980890:three_prime_UTR | 25.0% |
| ! | AGGAGACATATTTGAATATT+TGG | - | chr6_4:19444877-19444896 | None:intergenic | 25.0% |
| ! | TCATTCATTGTTGGTGAAAA+GGG | - | chr6_4:19440078-19440097 | None:intergenic | 30.0% |
| ! | ATCATTCATTGTTGGTGAAA+AGG | - | chr6_4:19440079-19440098 | None:intergenic | 30.0% |
| GTTAGAAGATCATTCATTGT+TGG | - | chr6_4:19440087-19440106 | None:intergenic | 30.0% | |
| ! | GTTTTTGTGTTTTGTGTTGT+TGG | + | chr6_4:19440229-19440248 | Msa0980890:intron | 30.0% |
| ! | TTGGATTAAGAGAGAGATTT+TGG | + | chr6_4:19440341-19440360 | Msa0980890:intron | 30.0% |
| ! | TTGGTTGATATTTCATGGTT+TGG | + | chr6_4:19440420-19440439 | Msa0980890:intron | 30.0% |
| AACGAAATCATATACAGTGT+CGG | - | chr6_4:19440594-19440613 | None:intergenic | 30.0% | |
| TTCTTTAAACAGCTTGAATC+AGG | - | chr6_4:19440801-19440820 | None:intergenic | 30.0% | |
| AAAGAAGTTAAAACATGAGC+CGG | + | chr6_4:19440815-19440834 | Msa0980890:intron | 30.0% | |
| CAAAAATCGAATAAAACCTC+CGG | - | chr6_4:19440837-19440856 | None:intergenic | 30.0% | |
| ! | TTTATTCGATTTTTGAACGC+TGG | + | chr6_4:19440842-19440861 | Msa0980890:intron | 30.0% |
| ! | GCATTTAACATGTTTTTCAC+TGG | + | chr6_4:19440989-19441008 | Msa0980890:intron | 30.0% |
| ! | AACATGTTTTTCACTGGATT+TGG | + | chr6_4:19440995-19441014 | Msa0980890:intron | 30.0% |
| ! | TTCTGAACTATGAACCTTTT+TGG | + | chr6_4:19441058-19441077 | Msa0980890:intron | 30.0% |
| TGCATTCAATACAAGCATAT+TGG | - | chr6_4:19441138-19441157 | None:intergenic | 30.0% | |
| CCGGTAATAATTTGAGAAAA+TGG | - | chr6_4:19441195-19441214 | None:intergenic | 30.0% | |
| TCTCAAATTATTACCGGTAT+TGG | + | chr6_4:19441198-19441217 | Msa0980890:intron | 30.0% | |
| !! | AGACGTTTTAAGCACTATTA+AGG | - | chr6_4:19441357-19441376 | None:intergenic | 30.0% |
| !! | GTCTATGCTTTGAATTTTAC+AGG | + | chr6_4:19441397-19441416 | Msa0980890:intron | 30.0% |
| ! | ATTTTACAGGCATCTAATGT+CGG | + | chr6_4:19441410-19441429 | Msa0980890:intron | 30.0% |
| AAGATGTCGATAGTTTAACT+AGG | + | chr6_4:19441472-19441491 | Msa0980890:intron | 30.0% | |
| CTTGGATAGTTTCTTCAAAA+AGG | + | chr6_4:19441641-19441660 | Msa0980890:CDS | 30.0% | |
| CGAAAGAATTACATGAAAGA+AGG | - | chr6_4:19442181-19442200 | None:intergenic | 30.0% | |
| TCGTTTAAACACTTAACACT+AGG | + | chr6_4:19442583-19442602 | Msa0980890:intron | 30.0% | |
| ! | TTTGGTAATTCAAAAGGAAC+TGG | + | chr6_4:19442806-19442825 | Msa0980890:intron | 30.0% |
| ! | TTGGTAATTCAAAAGGAACT+GGG | + | chr6_4:19442807-19442826 | Msa0980890:intron | 30.0% |
| ! | ATGTGAGATTAAGGTATTCA+TGG | - | chr6_4:19442839-19442858 | None:intergenic | 30.0% |
| TTTCAGTACATGTGAGATTA+AGG | - | chr6_4:19442848-19442867 | None:intergenic | 30.0% | |
| AAAATTGTAATCGCTGTTTG+TGG | - | chr6_4:19442929-19442948 | None:intergenic | 30.0% | |
| ! | CAAACAGCGATTACAATTTT+TGG | + | chr6_4:19442929-19442948 | Msa0980890:intron | 30.0% |
| AAAGAAGGTAAATACGAGTT+TGG | - | chr6_4:19442998-19443017 | None:intergenic | 30.0% | |
| AATCGTGCTAATTAACCAAT+GGG | - | chr6_4:19443278-19443297 | None:intergenic | 30.0% | |
| AAATCGTGCTAATTAACCAA+TGG | - | chr6_4:19443279-19443298 | None:intergenic | 30.0% | |
| ATTGGTTAATTAGCACGATT+TGG | + | chr6_4:19443278-19443297 | Msa0980890:intron | 30.0% | |
| ! | GTTTTTGTGATTGTCAGTAA+CGG | + | chr6_4:19443326-19443345 | Msa0980890:intron | 30.0% |
| ! | TTTTTGTGATTGTCAGTAAC+GGG | + | chr6_4:19443327-19443346 | Msa0980890:intron | 30.0% |
| ATTGACAGATTAATTGAGAC+CGG | + | chr6_4:19443454-19443473 | Msa0980890:CDS | 30.0% | |
| ! | ATTTCTAAGAAATAAGGAGG+GGG | - | chr6_4:19443557-19443576 | None:intergenic | 30.0% |
| ! | TTAAAAAGTGGTTTTCATCG+TGG | - | chr6_4:19443706-19443725 | None:intergenic | 30.0% |
| GTGTTTGCGAAAAAAAAACA+CGG | + | chr6_4:19444224-19444243 | Msa0980890:intron | 30.0% | |
| AACTATTTGGTCCTCAAAAA+TGG | + | chr6_4:19444357-19444376 | Msa0980890:intron | 30.0% | |
| !! | GAAATCCAAATCCATTTTTG+AGG | - | chr6_4:19444371-19444390 | None:intergenic | 30.0% |
| GATCATTCGATTTAGATCAA+TGG | + | chr6_4:19444415-19444434 | Msa0980890:intron | 30.0% | |
| AGTCGTTTATATAAGTCAGA+CGG | - | chr6_4:19444482-19444501 | None:intergenic | 30.0% | |
| AAACTAATTGGATCTGGATT+TGG | - | chr6_4:19444546-19444565 | None:intergenic | 30.0% | |
| TCAATCAAACTAATTGGATC+TGG | - | chr6_4:19444552-19444571 | None:intergenic | 30.0% | |
| ! | TTTGCATTTTCTTTGCCTTT+TGG | - | chr6_4:19444645-19444664 | None:intergenic | 30.0% |
| TGCAAAGAAACTCAAGAAAA+TGG | + | chr6_4:19444659-19444678 | Msa0980890:CDS | 30.0% | |
| !! | AACAATGAGAAGTATCATGA+TGG | - | chr6_4:19444695-19444714 | None:intergenic | 30.0% |
| ! | AAAGAGAGAGAATTTGAAGC+TGG | - | chr6_4:19440029-19440048 | None:intergenic | 35.0% |
| GGAAAATTGAAGAATGTGAG+AGG | - | chr6_4:19440054-19440073 | None:intergenic | 35.0% | |
| ! | TTGTGGGTTTGTTTAGATCT+AGG | + | chr6_4:19440183-19440202 | Msa0980890:intron | 35.0% |
| ! | GTTGTTGGGTTGTTTAGATT+TGG | + | chr6_4:19440244-19440263 | Msa0980890:intron | 35.0% |
| ATGCTTGTTTGGCAAGAAAT+TGG | + | chr6_4:19440289-19440308 | Msa0980890:intron | 35.0% | |
| TGCTTGTTTGGCAAGAAATT+GGG | + | chr6_4:19440290-19440309 | Msa0980890:intron | 35.0% | |
| GCTGCATTGTAGTTGTATTT+AGG | + | chr6_4:19440385-19440404 | Msa0980890:intron | 35.0% | |
| AAAATCCGAACTGAATCAGA+CGG | + | chr6_4:19440541-19440560 | Msa0980890:intron | 35.0% | |
| ! | TGTCTAGGGTTGTTTATTTG+AGG | + | chr6_4:19440756-19440775 | Msa0980890:intron | 35.0% |
| ! | GTCTAGGGTTGTTTATTTGA+GGG | + | chr6_4:19440757-19440776 | Msa0980890:intron | 35.0% |
| GGTTGTTTATTTGAGGGATT+CGG | + | chr6_4:19440763-19440782 | Msa0980890:intron | 35.0% | |
| CCAAACATTGTTACTATCCA+AGG | - | chr6_4:19440931-19440950 | None:intergenic | 35.0% | |
| CCTTGGATAGTAACAATGTT+TGG | + | chr6_4:19440928-19440947 | Msa0980890:intron | 35.0% | |
| ! | TCACTGGATTTGGTTATTAG+TGG | + | chr6_4:19441005-19441024 | Msa0980890:intron | 35.0% |
| !! | TGGTTATTAGTGGACAGTTT+TGG | + | chr6_4:19441015-19441034 | Msa0980890:intron | 35.0% |
| GGAAGTGATTACATAACTCA+AGG | - | chr6_4:19441174-19441193 | None:intergenic | 35.0% | |
| ATAGTGCTTAAAACGTCTTG+TGG | + | chr6_4:19441359-19441378 | Msa0980890:intron | 35.0% | |
| ACTGTGAAGGAAAATTTACC+TGG | - | chr6_4:19441903-19441922 | None:intergenic | 35.0% | |
| TAGTTAGTCATCAACTGTGA+AGG | - | chr6_4:19441916-19441935 | None:intergenic | 35.0% | |
| ! | TTTTATGCACACCTTTATGC+AGG | + | chr6_4:19441985-19442004 | Msa0980890:intron | 35.0% |
| TCATAGTAACTAACCCTTCA+TGG | - | chr6_4:19442050-19442069 | None:intergenic | 35.0% | |
| !! | TTTGTCTAGCTCTTCAACTT+TGG | - | chr6_4:19442377-19442396 | None:intergenic | 35.0% |
| ACATTATGTGTCGCAGAATT+TGG | + | chr6_4:19442466-19442485 | Msa0980890:intron | 35.0% | |
| TTAAGTCCTTCATACATGCA+CGG | + | chr6_4:19442730-19442749 | Msa0980890:intron | 35.0% | |
| ! | ATAATCAGTTAGCCTAGAAG+CGG | - | chr6_4:19442778-19442797 | None:intergenic | 35.0% |
| !! | CTCCTTCAGTTTCTTTTTCA+GGG | - | chr6_4:19443045-19443064 | None:intergenic | 35.0% |
| ! | TCTCCTTCAGTTTCTTTTTC+AGG | - | chr6_4:19443046-19443065 | None:intergenic | 35.0% |
| AAAGAAACTGAAGGAGAAGA+TGG | + | chr6_4:19443049-19443068 | Msa0980890:CDS | 35.0% | |
| ! | GAAAATTTGTTCACTGTCTC+CGG | - | chr6_4:19443476-19443495 | None:intergenic | 35.0% |
| ! | CAGTGAACAAATTTTCCAGA+AGG | + | chr6_4:19443480-19443499 | Msa0980890:CDS | 35.0% |
| ! | AATTTTCCAGAAGGCTATTC+AGG | + | chr6_4:19443489-19443508 | Msa0980890:CDS | 35.0% |
| AAAGTAAAGAGAGAAGAACC+TGG | - | chr6_4:19443528-19443547 | None:intergenic | 35.0% | |
| ! | ACTACTCAAAACAGCTTTTG+AGG | + | chr6_4:19443739-19443758 | Msa0980890:intron | 35.0% |
| CAATTACTACCAAGTGAAGT+CGG | - | chr6_4:19443771-19443790 | None:intergenic | 35.0% | |
| TCGTTCTTGAATTTCTGCAA+GGG | - | chr6_4:19443929-19443948 | None:intergenic | 35.0% | |
| CATGTCTTTGCAGACATTTA+TGG | + | chr6_4:19444075-19444094 | Msa0980890:intron | 35.0% | |
| TCAACTTTCAGAGACCAAAT+CGG | - | chr6_4:19444253-19444272 | None:intergenic | 35.0% | |
| ! | TTGGTCCTCAAAAATGGATT+TGG | + | chr6_4:19444363-19444382 | Msa0980890:intron | 35.0% |
| ! | CATTTTCTTTGCCTTTTGGA+GGG | - | chr6_4:19444641-19444660 | None:intergenic | 35.0% |
| !! | TTGTTTCTGTCATCAAACCA+TGG | + | chr6_4:19444728-19444747 | Msa0980890:CDS | 35.0% |
| ! | TGTTTCTGTCATCAAACCAT+GGG | + | chr6_4:19444729-19444748 | Msa0980890:CDS | 35.0% |
| ! | AAACCATGGGTTACCAAAAA+GGG | + | chr6_4:19444742-19444761 | Msa0980890:CDS | 35.0% |
| ! | AGTAAACTATGCACCCTTTT+TGG | - | chr6_4:19444758-19444777 | None:intergenic | 35.0% |
| AGGGTGCATAGTTTACTAAT+TGG | + | chr6_4:19444761-19444780 | Msa0980890:exon | 35.0% | |
| ! | ATTTGAAGCTGGTTAAGACC+TGG | - | chr6_4:19440018-19440037 | None:intergenic | 40.0% |
| ! | TTCATTGTTGGTGAAAAGGG+TGG | - | chr6_4:19440075-19440094 | None:intergenic | 40.0% |
| GCTTGTTTGGCAAGAAATTG+GGG | + | chr6_4:19440291-19440310 | Msa0980890:intron | 40.0% | |
| CTTGTTTGGCAAGAAATTGG+GGG | + | chr6_4:19440292-19440311 | Msa0980890:intron | 40.0% | |
| TTGTTTGGCAAGAAATTGGG+GGG | + | chr6_4:19440293-19440312 | Msa0980890:intron | 40.0% | |
| !! | AATTGGGGGGTTGATGAATT+TGG | + | chr6_4:19440306-19440325 | Msa0980890:intron | 40.0% |
| TTGAACCGTCTGATTCAGTT+CGG | - | chr6_4:19440549-19440568 | None:intergenic | 40.0% | |
| TAAACAACCCTAGACAGTGT+TGG | - | chr6_4:19440752-19440771 | None:intergenic | 40.0% | |
| ! | TTATTTGAGGGATTCGGTCA+CGG | + | chr6_4:19440769-19440788 | Msa0980890:intron | 40.0% |
| AGCAGAATACACTTGCACTA+AGG | + | chr6_4:19441270-19441289 | Msa0980890:intron | 40.0% | |
| !! | GACATTGAGTTGGGAGAATA+TGG | + | chr6_4:19441597-19441616 | Msa0980890:CDS | 40.0% |
| !! | TTGAGTTGGGAGAATATGGA+AGG | + | chr6_4:19441601-19441620 | Msa0980890:CDS | 40.0% |
| GGAGAATATGGAAGGAATTC+AGG | + | chr6_4:19441609-19441628 | Msa0980890:CDS | 40.0% | |
| !! | TAACCTTTTGAGAAAGCTCC+AGG | + | chr6_4:19441882-19441901 | Msa0980890:CDS | 40.0% |
| TTACCTGGAGCTTTCTCAAA+AGG | - | chr6_4:19441888-19441907 | None:intergenic | 40.0% | |
| TAGTAACTAACCCTTCATGG+CGG | - | chr6_4:19442047-19442066 | None:intergenic | 40.0% | |
| TGCAGCTATAAAGCAGAGAA+TGG | + | chr6_4:19442306-19442325 | Msa0980890:intron | 40.0% | |
| AGTTGAAGAGCTAGACAAAG+AGG | + | chr6_4:19442378-19442397 | Msa0980890:CDS | 40.0% | |
| TGTCGCAGAATTTGGCTAAT+AGG | + | chr6_4:19442474-19442493 | Msa0980890:intron | 40.0% | |
| GACGCTAATTATGCTATGTC+AGG | + | chr6_4:19442639-19442658 | Msa0980890:intron | 40.0% | |
| ! | GATGTCATTCCTACTTGTTG+AGG | + | chr6_4:19442694-19442713 | Msa0980890:intron | 40.0% |
| ATTCTCAGACCTCAACAAGT+AGG | - | chr6_4:19442706-19442725 | None:intergenic | 40.0% | |
| GATCAAGATGACTGAACCTT+AGG | + | chr6_4:19442898-19442917 | Msa0980890:intron | 40.0% | |
| GCTGTTTGTGGAAAATCCTA+AGG | - | chr6_4:19442917-19442936 | None:intergenic | 40.0% | |
| TGCCCTGAAAAAGAAACTGA+AGG | + | chr6_4:19443040-19443059 | Msa0980890:CDS | 40.0% | |
| ! | AAGATGGCTGAATTTCAGGT+AGG | + | chr6_4:19443065-19443084 | Msa0980890:intron | 40.0% |
| CTCTCGATATTCTTCATGGA+TGG | - | chr6_4:19443187-19443206 | None:intergenic | 40.0% | |
| CATCCATGAAGAATATCGAG+AGG | + | chr6_4:19443185-19443204 | Msa0980890:CDS | 40.0% | |
| CAACCTCTCGATATTCTTCA+TGG | - | chr6_4:19443191-19443210 | None:intergenic | 40.0% | |
| GTTGAGAGACGTGTATTTAC+AGG | + | chr6_4:19443210-19443229 | Msa0980890:CDS | 40.0% | |
| TGGAAGAAAATGCGTGCTTA+AGG | + | chr6_4:19443396-19443415 | Msa0980890:intron | 40.0% | |
| GTCGTTCTTGAATTTCTGCA+AGG | - | chr6_4:19443930-19443949 | None:intergenic | 40.0% | |
| GAAACTGCTTGATTTACAGC+AGG | + | chr6_4:19443975-19443994 | Msa0980890:CDS | 40.0% | |
| GCTTGACAACATAGAATCAC+AGG | + | chr6_4:19444132-19444151 | Msa0980890:CDS | 40.0% | |
| AAAAAACACGGAGACCGATT+TGG | + | chr6_4:19444236-19444255 | Msa0980890:intron | 40.0% | |
| TTCCTGCTGTTACAGATCAA+TGG | + | chr6_4:19444388-19444407 | Msa0980890:intron | 40.0% | |
| AACCATTGATCTGTAACAGC+AGG | - | chr6_4:19444393-19444412 | None:intergenic | 40.0% | |
| AGGCAATAATTCCCTCCAAA+AGG | + | chr6_4:19444627-19444646 | Msa0980890:CDS | 40.0% | |
| ! | GCATTTTCTTTGCCTTTTGG+AGG | - | chr6_4:19444642-19444661 | None:intergenic | 40.0% |
| ! | CAAACCATGGGTTACCAAAA+AGG | + | chr6_4:19444741-19444760 | Msa0980890:CDS | 40.0% |
| ACTGAATCAGACGGTTCAAC+TGG | + | chr6_4:19440550-19440569 | Msa0980890:intron | 45.0% | |
| !! | TCATATACAGTGTCGGCTCA+CGG | - | chr6_4:19440587-19440606 | None:intergenic | 45.0% |
| GAAGTTAAAACATGAGCCGG+AGG | + | chr6_4:19440818-19440837 | Msa0980890:intron | 45.0% | |
| ! | TTTGAAGAGTACAGGGTGTG+TGG | + | chr6_4:19441441-19441460 | Msa0980890:intron | 45.0% |
| AGTAACTAACCCTTCATGGC+GGG | - | chr6_4:19442046-19442065 | None:intergenic | 45.0% | |
| AATAGGCAGAAACCTGCTTG+TGG | + | chr6_4:19442491-19442510 | Msa0980890:CDS | 45.0% | |
| CAGAAACCTGCTTGTGGAAA+AGG | + | chr6_4:19442497-19442516 | Msa0980890:CDS | 45.0% | |
| GAAAAGGATCAGCTGTTGAC+CGG | + | chr6_4:19442513-19442532 | Msa0980890:CDS | 45.0% | |
| ! | TTGTCGTTGCTGTTCTTGAC+CGG | - | chr6_4:19442535-19442554 | None:intergenic | 45.0% |
| TATGTTTGCGTTCCGCTTCT+AGG | + | chr6_4:19442763-19442782 | Msa0980890:intron | 45.0% | |
| GGAGAAGATGGCTGAATTTC+AGG | + | chr6_4:19443061-19443080 | Msa0980890:CDS | 45.0% | |
| TTCATGGATGGCTTCTCTCA+GGG | - | chr6_4:19443175-19443194 | None:intergenic | 45.0% | |
| CTTGTTCCTGAATAGCCTTC+TGG | - | chr6_4:19443498-19443517 | None:intergenic | 45.0% | |
| CAGAAGGCTATTCAGGAACA+AGG | + | chr6_4:19443496-19443515 | Msa0980890:CDS | 45.0% | |
| ! | GCAGTGTTAGTTGATGCACA+AGG | + | chr6_4:19444103-19444122 | Msa0980890:CDS | 45.0% |
| !! | AAATAATTTGATTAATTAAT+AGG | - | chr6_4:19441733-19441752 | None:intergenic | 5.0% |
| TTCGTGGTTCAGCTTCGGTT+CGG | - | chr6_4:19440729-19440748 | None:intergenic | 50.0% | |
| !! | GTTGGTTCGTGGTTCAGCTT+CGG | - | chr6_4:19440734-19440753 | None:intergenic | 50.0% |
| ACCACGAACCAACACTGTCT+AGG | + | chr6_4:19440741-19440760 | Msa0980890:intron | 50.0% | |
| CCACGAACCAACACTGTCTA+GGG | + | chr6_4:19440742-19440761 | Msa0980890:intron | 50.0% | |
| TGACACTGACACGCCAATAC+CGG | - | chr6_4:19441214-19441233 | None:intergenic | 50.0% | |
| ! | GAATCGTTTGAGATCCCTCG+TGG | + | chr6_4:19441561-19441580 | Msa0980890:CDS | 50.0% |
| TGGAGGTGGTGACATTGAGT+TGG | + | chr6_4:19441587-19441606 | Msa0980890:CDS | 50.0% | |
| GGAGGTGGTGACATTGAGTT+GGG | + | chr6_4:19441588-19441607 | Msa0980890:CDS | 50.0% | |
| GGAAGGAATTCAGGAGAGCT+TGG | + | chr6_4:19441618-19441637 | Msa0980890:CDS | 50.0% | |
| GAATTCAGGAGAGCTTGGCT+TGG | + | chr6_4:19441623-19441642 | Msa0980890:CDS | 50.0% | |
| CTCATGGGCATCCTGCATAA+AGG | - | chr6_4:19441999-19442018 | None:intergenic | 50.0% | |
| CTTTATGCAGGATGCCCATG+AGG | + | chr6_4:19441997-19442016 | Msa0980890:intron | 50.0% | |
| ! | GCTGATCCTTTTCCACAAGC+AGG | - | chr6_4:19442506-19442525 | None:intergenic | 50.0% |
| GAACGACCGTGCATGTATGA+AGG | - | chr6_4:19442739-19442758 | None:intergenic | 50.0% | |
| CTTCATGGATGGCTTCTCTC+AGG | - | chr6_4:19443176-19443195 | None:intergenic | 50.0% | |
| GCTATTCAGGAACAAGGACG+AGG | + | chr6_4:19443502-19443521 | Msa0980890:CDS | 50.0% | |
| !! | AGGATCTCACCGACTTCACT+TGG | + | chr6_4:19443759-19443778 | Msa0980890:intron | 50.0% |
| TGTGAGACGTGACCTTGCAA+AGG | - | chr6_4:19443875-19443894 | None:intergenic | 50.0% | |
| GCAGTAGATCATGTGCAGCA+AGG | + | chr6_4:19444607-19444626 | Msa0980890:CDS | 50.0% | |
| !! | GCACCCTTTTTGGTAACCCA+TGG | - | chr6_4:19444748-19444767 | None:intergenic | 50.0% |
| !! | CCCTAGACAGTGTTGGTTCG+TGG | - | chr6_4:19440745-19440764 | None:intergenic | 55.0% |
| ! | TTTGAGATCCCTCGTGGTCG+TGG | + | chr6_4:19441567-19441586 | Msa0980890:CDS | 55.0% |
| CACAGCCTTGGACTCCTCAT+GGG | - | chr6_4:19442014-19442033 | None:intergenic | 55.0% | |
| TCACAGCCTTGGACTCCTCA+TGG | - | chr6_4:19442015-19442034 | None:intergenic | 55.0% | |
| ACCAAAGCTCCCGCCATGAA+GGG | + | chr6_4:19442034-19442053 | Msa0980890:CDS | 55.0% | |
| !! | ACAGTGTCGGCTCACGGTTC+AGG | - | chr6_4:19440581-19440600 | None:intergenic | 60.0% |
| GGATGCCCATGAGGAGTCCA+AGG | + | chr6_4:19442006-19442025 | Msa0980890:intron | 60.0% | |
| ! | GGGAGCTTTGGTCACAGCCT+TGG | - | chr6_4:19442026-19442045 | None:intergenic | 60.0% |
| GACCAAAGCTCCCGCCATGA+AGG | + | chr6_4:19442033-19442052 | Msa0980890:CDS | 60.0% | |
| ! | ACCCTTCATGGCGGGAGCTT+TGG | - | chr6_4:19442038-19442057 | None:intergenic | 60.0% |
| AACGGGCGCAAGAGCTGATG+AGG | + | chr6_4:19443344-19443363 | Msa0980890:CDS | 60.0% | |
| TCAGGAACAAGGACGAGGCC+AGG | + | chr6_4:19443507-19443526 | Msa0980890:CDS | 60.0% | |
| GAGATCCCTCGTGGTCGTGG+AGG | + | chr6_4:19441570-19441589 | Msa0980890:CDS | 65.0% | |
| ATCCCTCGTGGTCGTGGAGG+TGG | + | chr6_4:19441573-19441592 | Msa0980890:CDS | 65.0% | |
| CACCACCTCCACGACCACGA+GGG | - | chr6_4:19441578-19441597 | None:intergenic | 65.0% | |
| TCACCACCTCCACGACCACG+AGG | - | chr6_4:19441579-19441598 | None:intergenic | 65.0% | |
| GGGCGCAAGAGCTGATGAGG+AGG | + | chr6_4:19443347-19443366 | Msa0980890:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 19440015 | 19444944 | 19440015 | ID=Msa0980890;Name=Msa0980890 |
| chr6_4 | mRNA | 19440015 | 19444944 | 19440015 | ID=Msa0980890-mRNA-1;Parent=Msa0980890;Name=Msa0980890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=75|1|1|1|0.92|0.85|14|153|305 |
| chr6_4 | exon | 19440015 | 19440107 | 19440015 | ID=Msa0980890-mRNA-1:exon:6023;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19441561 | 19441662 | 19441561 | ID=Msa0980890-mRNA-1:exon:6024;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19441847 | 19441903 | 19441847 | ID=Msa0980890-mRNA-1:exon:6025;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19442007 | 19442055 | 19442007 | ID=Msa0980890-mRNA-1:exon:6026;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19442311 | 19442399 | 19442311 | ID=Msa0980890-mRNA-1:exon:6027;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19442482 | 19442555 | 19442482 | ID=Msa0980890-mRNA-1:exon:6028;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19443040 | 19443082 | 19443040 | ID=Msa0980890-mRNA-1:exon:6029;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19443171 | 19443231 | 19443171 | ID=Msa0980890-mRNA-1:exon:6030;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19443343 | 19443368 | 19443343 | ID=Msa0980890-mRNA-1:exon:6031;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19443451 | 19443528 | 19443451 | ID=Msa0980890-mRNA-1:exon:6032;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19443916 | 19443996 | 19443916 | ID=Msa0980890-mRNA-1:exon:6033;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19444088 | 19444153 | 19444088 | ID=Msa0980890-mRNA-1:exon:6034;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19444598 | 19444902 | 19444598 | ID=Msa0980890-mRNA-1:exon:6035;Parent=Msa0980890-mRNA-1 |
| chr6_4 | exon | 19444923 | 19444944 | 19444923 | ID=Msa0980890-mRNA-1:exon:6036;Parent=Msa0980890-mRNA-1 |
| chr6_4 | five_prime_UTR | 19440015 | 19440089 | 19440015 | ID=Msa0980890-mRNA-1:five_prime_utr;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19440090 | 19440107 | 19440090 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19441561 | 19441662 | 19441561 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19441847 | 19441903 | 19441847 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19442007 | 19442055 | 19442007 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19442311 | 19442399 | 19442311 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19442482 | 19442555 | 19442482 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19443040 | 19443082 | 19443040 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19443171 | 19443231 | 19443171 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19443343 | 19443368 | 19443343 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19443451 | 19443528 | 19443451 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19443916 | 19443996 | 19443916 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19444088 | 19444153 | 19444088 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | CDS | 19444598 | 19444771 | 19444598 | ID=Msa0980890-mRNA-1:cds;Parent=Msa0980890-mRNA-1 |
| chr6_4 | three_prime_UTR | 19444772 | 19444902 | 19444772 | ID=Msa0980890-mRNA-1:three_prime_utr;Parent=Msa0980890-mRNA-1 |
| chr6_4 | three_prime_UTR | 19444923 | 19444944 | 19444923 | ID=Msa0980890-mRNA-1:three_prime_utr;Parent=Msa0980890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
