AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0702690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702690 MtrunA17_Chr8g0380531 97.710 131 3 0 1 131 163 293 1.32e-89 267
Msa0702690 MtrunA17_Chr6g0464841 51.562 128 61 1 5 131 166 293 9.74e-39 135
Msa0702690 MtrunA17_Chr6g0464871 49.635 137 63 2 1 131 169 305 7.67e-36 127
Msa0702690 MtrunA17_Chr6g0464861 50.781 128 62 1 5 131 165 292 9.92e-36 127
Msa0702690 MtrunA17_Chr5g0414331 46.212 132 70 1 1 131 160 291 1.62e-34 124
Msa0702690 MtrunA17_Chr6g0464881 46.154 130 69 1 3 131 164 293 2.17e-34 124
Msa0702690 MtrunA17_Chr6g0464921 46.923 130 68 1 3 131 164 293 1.05e-33 122
Msa0702690 MtrunA17_Chr5g0414321 46.212 132 70 1 1 131 158 289 7.63e-33 119
Msa0702690 MtrunA17_Chr7g0249981 45.385 130 70 1 3 131 176 305 3.24e-32 118
Msa0702690 MtrunA17_Chr7g0250001 44.615 130 71 1 3 131 157 286 7.20e-31 114
Msa0702690 MtrunA17_Chr7g0250021 44.615 130 70 2 3 131 165 293 9.10e-30 109
Msa0702690 MtrunA17_Chr7g0249931 44.615 130 70 2 3 131 193 321 1.47e-29 110
Msa0702690 MtrunA17_Chr1g0207981 35.938 128 80 1 3 130 180 305 1.49e-20 85.9
Msa0702690 MtrunA17_Chr4g0053501 35.433 127 79 2 3 129 168 291 9.00e-20 84.0
Msa0702690 MtrunA17_Chr5g0401721 35.115 131 76 5 3 129 175 300 6.80e-19 81.3
Msa0702690 MtrunA17_Chr4g0053321 35.433 127 79 2 3 129 183 306 3.07e-16 73.6
Msa0702690 MtrunA17_Chr8g0377921 35.461 141 76 7 3 131 159 296 6.51e-16 72.8
Msa0702690 MtrunA17_Chr5g0431431 38.760 129 68 5 5 131 116 235 3.73e-15 70.5
Msa0702690 MtrunA17_Chr3g0092641 34.615 130 79 3 5 131 189 315 1.59e-14 68.9
Msa0702690 MtrunA17_Chr7g0249961 44.000 75 41 1 58 131 24 98 5.34e-14 66.6
Msa0702690 MtrunA17_Chr5g0393591 32.061 131 62 3 3 131 179 284 7.04e-14 67.0
Msa0702690 MtrunA17_Chr6g0454191 31.783 129 84 3 5 131 192 318 1.30e-13 66.2
Msa0702690 MtrunA17_Chr6g0453981 33.846 130 80 4 5 131 61 187 1.37e-13 65.1
Msa0702690 MtrunA17_Chr5g0426431 32.308 130 82 3 5 131 189 315 1.84e-13 65.9
Msa0702690 MtrunA17_Chr6g0454341 34.109 129 82 3 5 131 188 315 3.92e-13 64.7
Msa0702690 MtrunA17_Chr5g0432731 39.000 100 53 3 34 131 40 133 5.77e-13 63.9
Msa0702690 MtrunA17_Chr3g0106251 44.681 94 43 4 40 131 46 132 8.08e-13 63.5
Msa0702690 MtrunA17_Chr3g0121991 34.286 140 76 6 3 131 238 372 1.47e-12 63.2
Msa0702690 MtrunA17_Chr6g0454201 31.250 128 86 2 5 131 192 318 1.80e-12 62.8
Msa0702690 MtrunA17_Chr3g0122001 30.714 140 81 6 3 131 645 779 2.13e-12 62.8
Msa0702690 MtrunA17_Chr3g0122001 30.435 138 84 5 3 131 165 299 5.19e-12 61.6
Msa0702690 MtrunA17_Chr1g0207951 31.452 124 81 2 10 131 290 411 2.64e-12 62.8
Msa0702690 MtrunA17_Chr6g0454181 32.031 128 85 2 5 131 191 317 5.21e-12 61.6
Msa0702690 MtrunA17_Chr3g0106231 44.565 92 42 4 42 129 202 288 5.94e-12 61.6
Msa0702690 MtrunA17_Chr8g0359821 31.538 130 85 3 4 131 188 315 7.23e-12 61.2
Msa0702690 MtrunA17_Chr6g0454141 34.351 131 78 5 5 131 191 317 8.78e-12 60.8
Msa0702690 MtrunA17_Chr6g0454151 31.538 130 81 5 5 131 191 315 8.86e-12 60.8
Msa0702690 MtrunA17_Chr7g0217881 32.308 130 86 2 3 131 171 299 8.89e-12 60.8
Msa0702690 MtrunA17_Chr1g0207831 33.333 111 63 4 26 131 196 300 1.10e-11 60.8
Msa0702690 MtrunA17_Chr6g0454401 30.769 130 84 4 5 131 192 318 1.23e-11 60.5
Msa0702690 MtrunA17_Chr1g0207861 30.709 127 76 4 10 131 179 298 1.34e-11 60.5
Msa0702690 MtrunA17_Chr3g0078841 31.008 129 86 3 5 131 188 315 1.41e-11 60.5
Msa0702690 MtrunA17_Chr5g0423981 31.818 132 82 5 4 131 155 282 1.82e-11 60.1
Msa0702690 MtrunA17_Chr6g0453941 31.298 131 83 4 5 131 113 240 2.04e-11 59.3
Msa0702690 MtrunA17_Chr6g0452771 31.250 128 86 2 5 131 191 317 3.24e-11 59.3
Msa0702690 MtrunA17_Chr6g0454211 31.783 129 84 3 5 131 478 604 5.71e-11 58.9
Msa0702690 MtrunA17_Chr5g0431401 31.538 130 78 4 4 131 165 285 5.99e-11 58.5
Msa0702690 MtrunA17_Chr4g0050341 29.323 133 86 2 5 131 197 327 6.85e-11 58.5
Msa0702690 MtrunA17_Chr6g0454301 31.008 129 86 3 5 131 441 568 7.67e-11 58.5
Msa0702690 MtrunA17_Chr8g0377941 34.058 138 71 6 3 131 173 299 9.08e-11 58.2
Msa0702690 MtrunA17_Chr1g0207971 31.304 115 75 2 10 122 172 284 9.39e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0702690 AT2G43840.2 53.968 126 56 1 8 131 159 284 3.99e-42 144
Msa0702690 AT2G43840.1 53.175 126 57 1 8 131 159 284 3.54e-41 142
Msa0702690 AT2G43820.1 52.381 126 58 1 8 131 159 284 2.09e-38 134
Msa0702690 AT2G31790.1 45.385 130 69 1 4 131 163 292 6.62e-31 114
Msa0702690 AT1G05675.1 43.411 129 72 1 4 131 162 290 2.23e-29 110
Msa0702690 AT1G05680.1 43.411 129 72 1 4 131 162 290 4.97e-29 109
Msa0702690 AT2G31750.1 42.308 130 74 1 3 131 161 290 3.26e-27 104
Msa0702690 AT2G31750.2 42.308 130 74 1 3 131 161 290 3.99e-27 104
Msa0702690 AT4G15480.1 30.534 131 86 2 1 131 182 307 3.40e-21 88.2
Msa0702690 AT4G15490.1 30.827 133 88 2 1 131 170 300 1.20e-19 84.0
Msa0702690 AT2G23260.1 35.246 122 75 3 3 122 161 280 1.40e-19 83.6
Msa0702690 AT2G23250.1 35.537 121 71 3 3 122 148 262 3.43e-19 82.4
Msa0702690 AT3G21560.1 30.233 129 89 1 3 131 179 306 4.88e-16 73.6
Msa0702690 AT4G15500.1 29.545 132 90 2 1 131 167 296 1.05e-15 72.8
Msa0702690 AT1G78270.1 31.579 133 81 3 5 131 188 316 1.15e-14 69.7
Msa0702690 AT1G24100.1 32.836 134 86 3 2 131 162 295 1.21e-14 69.7
Msa0702690 AT2G28080.1 25.862 116 79 1 5 120 189 297 2.62e-13 65.9
Msa0702690 AT1G22370.1 28.571 133 85 4 5 131 14 142 2.05e-12 62.8
Msa0702690 AT1G22360.1 28.571 133 85 3 5 131 186 314 2.25e-12 63.2
Msa0702690 AT1G22370.2 28.571 133 85 4 5 131 184 312 2.80e-12 62.8
Msa0702690 AT1G22360.2 28.571 133 85 3 5 131 186 314 3.23e-12 62.8
Msa0702690 AT4G15550.1 30.075 133 73 4 3 131 182 298 3.97e-12 62.4
Msa0702690 AT1G05560.1 32.824 131 75 5 5 131 157 278 1.69e-11 60.5
Msa0702690 AT1G05560.2 32.824 131 75 5 5 131 207 328 1.88e-11 60.5
Msa0702690 AT1G05530.1 32.558 129 79 4 6 131 158 281 1.90e-11 60.5
Msa0702690 AT1G22400.1 27.481 131 89 3 5 131 190 318 1.97e-11 60.5
Msa0702690 AT1G22380.1 28.244 131 88 3 5 131 189 317 3.38e-11 59.7
Msa0702690 AT2G23210.1 32.456 114 69 4 3 112 159 268 9.45e-11 58.2

Find 96 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAATGATATCTGCTTTA+TGG 0.101976 4_4:-74428116 None:intergenic
AATGAGTTCCTTCAAATTCT+TGG 0.176613 4_4:-74427793 None:intergenic
GGAATAGCATTAGGATTATT+AGG 0.237039 4_4:+74429073 Msa0702690:exon
CTTATGGGTAATCCCTAATA+TGG 0.251252 4_4:+74429111 Msa0702690:three_prime_UTR
GAAGTGGTTCAAATTTCTTA+TGG 0.275041 4_4:+74429095 Msa0702690:three_prime_UTR
GTTGGCCCAATTGTCAATAT+TGG 0.291942 4_4:-74428882 None:intergenic
TACTCCCTTGTCCAAGTAAA+AGG 0.292888 4_4:-74428913 None:intergenic
CAATAGGTGATGAGTCTAAT+TGG 0.307848 4_4:-74428968 None:intergenic
GGAAGCCCTGGCATAGAAAT+TGG 0.312817 4_4:-74428000 None:intergenic
ACACTTGAAGCATTGTGTTT+AGG 0.320691 4_4:+74429275 Msa0702690:three_prime_UTR
AAATCATTGTCTTTGTCATT+TGG 0.332954 4_4:-74428936 None:intergenic
CTTGTGCTTGTATCAATAAT+AGG 0.352941 4_4:+74427485 Msa0702690:five_prime_UTR
ATGATGGAGATGCATGGTTT+TGG 0.353154 4_4:-74427656 None:intergenic
TCAGCTATTTATGTATCATT+TGG 0.358377 4_4:+74429017 Msa0702690:CDS
CTTCAAATTCTTGGAGCCTA+TGG 0.363594 4_4:-74427784 None:intergenic
AAGTGGTTCAAATTTCTTAT+GGG 0.377984 4_4:+74429096 Msa0702690:three_prime_UTR
TCATATACTACACAATCTAT+AGG 0.379795 4_4:-74427840 None:intergenic
GTTCTATCTAACAAAGCTAT+TGG 0.386677 4_4:+74429220 Msa0702690:three_prime_UTR
GAAATTGGCATTGAAGATAT+AGG 0.387888 4_4:-74427985 None:intergenic
GAAATGAGTTCAAGTGGAAA+AGG 0.388516 4_4:+74429166 Msa0702690:three_prime_UTR
ATCAATAATAGGAAAGGAAA+TGG 0.391481 4_4:+74427496 Msa0702690:five_prime_UTR
GAAAAGGGTTGGTAGTGAAT+TGG 0.401038 4_4:+74429182 Msa0702690:three_prime_UTR
TTTGAATTCAGCCAATCAAT+AGG 0.404156 4_4:-74428984 None:intergenic
TCCAAAACCCATTGAAGAAA+AGG 0.404165 4_4:-74427864 None:intergenic
CTCCTAGTAAGTCAAATCTT+TGG 0.404206 4_4:-74427892 None:intergenic
CTATGTCCAATATTGACAAT+TGG 0.407942 4_4:+74428876 Msa0702690:CDS
GCAAATGAAGGAATAGCATT+AGG 0.412231 4_4:+74429064 Msa0702690:exon
TAGACTCATCACCTATTGAT+TGG 0.418457 4_4:+74428973 Msa0702690:CDS
AGAGTTAAGGTAAATGAGAA+TGG 0.425016 4_4:+74429378 Msa0702690:three_prime_UTR
ACATAAATAGCTGACCCTTC+AGG 0.426164 4_4:-74429008 None:intergenic
TATCTAACAAAGCTATTGGT+TGG 0.428427 4_4:+74429224 Msa0702690:three_prime_UTR
CATATACTACACAATCTATA+GGG 0.430640 4_4:-74427839 None:intergenic
AGCAAACGTTTGAGCACAAA+AGG 0.432736 4_4:+74427598 Msa0702690:five_prime_UTR
TATGTCCAATATTGACAATT+GGG 0.442133 4_4:+74428877 Msa0702690:CDS
CCTTCCTTTGTTTATGACCC+TGG 0.449807 4_4:+74428045 Msa0702690:CDS
CGTTTGCTGAATTGAAGCAT+TGG 0.459472 4_4:-74427583 None:intergenic
CAATTTGACTTCATATCTGA+TGG 0.466660 4_4:+74427699 Msa0702690:five_prime_UTR
GTTTGCTGAATTGAAGCATT+GGG 0.469700 4_4:-74427582 None:intergenic
AAGTCAAATTGAAGGGTTGA+AGG 0.475531 4_4:-74427687 None:intergenic
ATGTGACCTTGACTTGGGTA+TGG 0.475859 4_4:-74427556 None:intergenic
TTATGTATCATTTGGAAGCA+TGG 0.479963 4_4:+74429025 Msa0702690:CDS
GGGTTTATGTGACCTTGACT+TGG 0.481353 4_4:-74427562 None:intergenic
TCAATGCCAATTTCTATGCC+AGG 0.483097 4_4:+74427994 Msa0702690:exon
CAGATATGAAGTCAAATTGA+AGG 0.488866 4_4:-74427695 None:intergenic
AAATTGAAGGGTTGAAGGTA+AGG 0.491787 4_4:-74427682 None:intergenic
ATTGAAGAAATGAGTTCAAG+TGG 0.492000 4_4:+74429160 Msa0702690:three_prime_UTR
CTGGTCTTCTAGCTTGTAGA+AGG 0.493156 4_4:-74428145 None:intergenic
CTTCTACAAGCTAGAAGACC+AGG 0.493515 4_4:+74428146 Msa0702690:CDS
GCATTAGGATTATTAGGAAG+TGG 0.500366 4_4:+74429079 Msa0702690:exon
CATAGGCTCCAAGAATTTGA+AGG 0.504127 4_4:+74427785 Msa0702690:five_prime_UTR
TAGTAAGCAGGATAGAAGCC+AGG 0.514306 4_4:-74428063 None:intergenic
GTTGGCTTTCTAACACATAG+TGG 0.515083 4_4:+74429242 Msa0702690:three_prime_UTR
CTATCCTGCTTACTATGAGA+TGG 0.519933 4_4:+74428071 Msa0702690:CDS
TGTTGAGGATGTGTGGAAAG+TGG 0.519979 4_4:+74429351 Msa0702690:three_prime_UTR
CCAAAACCCATTGAAGAAAA+GGG 0.527692 4_4:-74427863 None:intergenic
GGAAAGTGGAATGAGAGTTA+AGG 0.528284 4_4:+74429365 Msa0702690:three_prime_UTR
AAATGAGTTCAAGTGGAAAA+GGG 0.528479 4_4:+74429167 Msa0702690:three_prime_UTR
AGCCAAAGATTTGACTTACT+AGG 0.530592 4_4:+74427890 Msa0702690:five_prime_UTR
ATTGTGTTTAGGAGTGCCTA+TGG 0.537967 4_4:+74429286 Msa0702690:three_prime_UTR
GCTTTCTAACACATAGTGGA+TGG 0.539618 4_4:+74429246 Msa0702690:three_prime_UTR
GAGTTAAGGTAAATGAGAAT+GGG 0.543847 4_4:+74429379 Msa0702690:three_prime_UTR
AGATCAAGCAAAGGAAGCCC+TGG 0.546518 4_4:-74428012 None:intergenic
CCAGGGTCATAAACAAAGGA+AGG 0.547762 4_4:-74428045 None:intergenic
GGTTTATGTGACCTTGACTT+GGG 0.551938 4_4:-74427561 None:intergenic
GTTGAAGGTAAGGATGATGA+TGG 0.554783 4_4:-74427672 None:intergenic
ATATCTGATGGCTATGATGA+AGG 0.556777 4_4:+74427711 Msa0702690:five_prime_UTR
CCCTTGTCCAAGTAAAAGGA+TGG 0.556992 4_4:-74428909 None:intergenic
CAATGCCAATTTCTATGCCA+GGG 0.557141 4_4:+74427995 Msa0702690:exon
CTATCTCACATGAAAACCAT+AGG 0.561539 4_4:+74427768 Msa0702690:five_prime_UTR
CAAAATATGTTGAGGATGTG+TGG 0.562683 4_4:+74429344 Msa0702690:three_prime_UTR
CATGTATTATATGTTTACCA+TGG 0.563028 4_4:+74427949 Msa0702690:five_prime_UTR
TAGGAAGCTTTAAAAGTCCA+TGG 0.564480 4_4:-74427966 None:intergenic
ATAACCATCTCATAGTAAGC+AGG 0.564645 4_4:-74428075 None:intergenic
CTTTAGCATAGAGCAAATGA+AGG 0.572729 4_4:+74429052 Msa0702690:CDS
AAGTAAAAGGATGGAACTGT+TGG 0.582183 4_4:-74428900 None:intergenic
CAGGGTCATAAACAAAGGAA+GGG 0.583374 4_4:-74428044 None:intergenic
AGTAAGCAGGATAGAAGCCA+GGG 0.586536 4_4:-74428062 None:intergenic
ATGGTTCCATACCCAAGTCA+AGG 0.598862 4_4:+74427550 Msa0702690:five_prime_UTR
GCTTGTATCAATAATAGGAA+AGG 0.601076 4_4:+74427490 Msa0702690:five_prime_UTR
TGGCTGAATTCAAAGCCTGA+AGG 0.601191 4_4:+74428993 Msa0702690:CDS
CACTGTGGTATTGCAACCAT+AGG 0.601959 4_4:-74429302 None:intergenic
AGTGAATTGGATACCACAGT+TGG 0.602235 4_4:+74429195 Msa0702690:three_prime_UTR
TTATTGATACAAGCACAAGT+TGG 0.606580 4_4:-74427481 None:intergenic
GAAGGTGGCTTTGCTCAAGT+TGG 0.608792 4_4:+74427729 Msa0702690:five_prime_UTR
AGATATGAAGTCAAATTGAA+GGG 0.612280 4_4:-74427694 None:intergenic
AGGGTCATAAACAAAGGAAG+GGG 0.619189 4_4:-74428043 None:intergenic
GAGTTCAAGTGGAAAAGGGT+TGG 0.622029 4_4:+74429171 Msa0702690:three_prime_UTR
GGCTGAATTCAAAGCCTGAA+GGG 0.623236 4_4:+74428994 Msa0702690:CDS
TTAGATAGAACTTCCAACTG+TGG 0.627701 4_4:-74429208 None:intergenic
GAAGCCAGGGTCATAAACAA+AGG 0.633076 4_4:-74428049 None:intergenic
TTTGAATGCAAAATATGTTG+AGG 0.643170 4_4:+74429336 Msa0702690:three_prime_UTR
TCTGATGGCTATGATGAAGG+TGG 0.677720 4_4:+74427714 Msa0702690:five_prime_UTR
AAAAGGAGTTAACGTCACAA+TGG 0.689260 4_4:+74427615 Msa0702690:five_prime_UTR
GTATCTTTGAGATCAAGCAA+AGG 0.699284 4_4:-74428021 None:intergenic
AGGATGATGATGGAGATGCA+TGG 0.702013 4_4:-74427662 None:intergenic
CAAAGGTTGATCAGTCACTG+TGG 0.741838 4_4:-74429317 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATAAACAATAAATAG+AGG + chr4_4:74428322-74428341 Msa0702690:intron 10.0%
!! AAAAATAAACAATAAATAGA+GGG + chr4_4:74428323-74428342 Msa0702690:intron 10.0%
!! CTAAATTTAAATTTATTTCA+TGG + chr4_4:74428468-74428487 Msa0702690:intron 10.0%
!! TAAAAATAAACAATAAATAG+AGG + chr4_4:74428322-74428341 Msa0702690:intron 10.0%
!! AAAAATAAACAATAAATAGA+GGG + chr4_4:74428323-74428342 Msa0702690:intron 10.0%
!! CTAAATTTAAATTTATTTCA+TGG + chr4_4:74428468-74428487 Msa0702690:intron 10.0%
!! ACATAATAAGGAATATAAAA+AGG - chr4_4:74428189-74428208 None:intergenic 15.0%
!! AAATAACTTCAAACATAATA+AGG - chr4_4:74428201-74428220 None:intergenic 15.0%
!! AATTAAGAGTAATTAATACA+GGG - chr4_4:74428497-74428516 None:intergenic 15.0%
!!! ATAAAAGTGTCAAATATTTT+TGG - chr4_4:74428612-74428631 None:intergenic 15.0%
!!! TATTGATATAAACTGAATTT+TGG + chr4_4:74428774-74428793 Msa0702690:intron 15.0%
!! ACATAATAAGGAATATAAAA+AGG - chr4_4:74428189-74428208 None:intergenic 15.0%
!! AAATAACTTCAAACATAATA+AGG - chr4_4:74428201-74428220 None:intergenic 15.0%
!! AATTAAGAGTAATTAATACA+GGG - chr4_4:74428497-74428516 None:intergenic 15.0%
!!! ATAAAAGTGTCAAATATTTT+TGG - chr4_4:74428612-74428631 None:intergenic 15.0%
!!! TATTGATATAAACTGAATTT+TGG + chr4_4:74428774-74428793 Msa0702690:intron 15.0%
!! TAATAAGGAATATAAAAAGG+AGG - chr4_4:74428186-74428205 None:intergenic 20.0%
!!! TTTGTTTCTTACGAAAAAAT+CGG - chr4_4:74428392-74428411 None:intergenic 20.0%
!! GAATTAAGAGTAATTAATAC+AGG - chr4_4:74428498-74428517 None:intergenic 20.0%
!! ATTAAAAGTAAGTAAGTTAG+TGG - chr4_4:74428520-74428539 None:intergenic 20.0%
!! AGAGATCATATACATATAAA+TGG - chr4_4:74428657-74428676 None:intergenic 20.0%
!!! ACCTCATATTTTAATTAATG+TGG + chr4_4:74428723-74428742 Msa0702690:intron 20.0%
!! ACCACATTAATTAAAATATG+AGG - chr4_4:74428727-74428746 None:intergenic 20.0%
!! TTCCATATGAATGATATATA+AGG + chr4_4:74428833-74428852 Msa0702690:intron 20.0%
!!! TATTCTTTTTCTCCATATTA+GGG - chr4_4:74429126-74429145 None:intergenic 20.0%
!!! ATATTCTTTTTCTCCATATT+AGG - chr4_4:74429127-74429146 None:intergenic 20.0%
!! TAATAAGGAATATAAAAAGG+AGG - chr4_4:74428186-74428205 None:intergenic 20.0%
!!! TTTGTTTCTTACGAAAAAAT+CGG - chr4_4:74428392-74428411 None:intergenic 20.0%
!! GAATTAAGAGTAATTAATAC+AGG - chr4_4:74428498-74428517 None:intergenic 20.0%
!! ATTAAAAGTAAGTAAGTTAG+TGG - chr4_4:74428520-74428539 None:intergenic 20.0%
!! AGAGATCATATACATATAAA+TGG - chr4_4:74428657-74428676 None:intergenic 20.0%
!!! ACCTCATATTTTAATTAATG+TGG + chr4_4:74428723-74428742 Msa0702690:intron 20.0%
!! ACCACATTAATTAAAATATG+AGG - chr4_4:74428727-74428746 None:intergenic 20.0%
!! TTCCATATGAATGATATATA+AGG + chr4_4:74428833-74428852 Msa0702690:intron 20.0%
!!! TATTCTTTTTCTCCATATTA+GGG - chr4_4:74429126-74429145 None:intergenic 20.0%
!!! ATATTCTTTTTCTCCATATT+AGG - chr4_4:74429127-74429146 None:intergenic 20.0%
! ATCAATAATAGGAAAGGAAA+TGG + chr4_4:74427496-74427515 Msa0702690:five_prime_UTR 25.0%
!!! GTATAGTATGCATGTTTTAA+TGG + chr4_4:74427531-74427550 Msa0702690:five_prime_UTR 25.0%
! AGATATGAAGTCAAATTGAA+GGG - chr4_4:74427697-74427716 None:intergenic 25.0%
! CATATACTACACAATCTATA+GGG - chr4_4:74427842-74427861 None:intergenic 25.0%
! TCATATACTACACAATCTAT+AGG - chr4_4:74427843-74427862 None:intergenic 25.0%
! CATGTATTATATGTTTACCA+TGG + chr4_4:74427949-74427968 Msa0702690:five_prime_UTR 25.0%
!!! GTGAAAGCAATTTTAATAAG+TGG - chr4_4:74428275-74428294 None:intergenic 25.0%
! AATAAACAATAAATAGAGGG+TGG + chr4_4:74428326-74428345 Msa0702690:intron 25.0%
!!! GGTCATTTTTATAAGAAACA+TGG - chr4_4:74428591-74428610 None:intergenic 25.0%
! CATATACATATAAATGGTCA+CGG - chr4_4:74428651-74428670 None:intergenic 25.0%
! CACCTTATATATCATTCATA+TGG - chr4_4:74428838-74428857 None:intergenic 25.0%
! CATATGAATGATATATAAGG+TGG + chr4_4:74428836-74428855 Msa0702690:intron 25.0%
! TATGTCCAATATTGACAATT+GGG + chr4_4:74428877-74428896 Msa0702690:CDS 25.0%
! AAATCATTGTCTTTGTCATT+TGG - chr4_4:74428939-74428958 None:intergenic 25.0%
! TCAGCTATTTATGTATCATT+TGG + chr4_4:74429017-74429036 Msa0702690:CDS 25.0%
! AAGTGGTTCAAATTTCTTAT+GGG + chr4_4:74429096-74429115 Msa0702690:three_prime_UTR 25.0%
!! TCAACATATTTTGCATTCAA+AGG - chr4_4:74429337-74429356 None:intergenic 25.0%
! TTTGAATGCAAAATATGTTG+AGG + chr4_4:74429336-74429355 Msa0702690:three_prime_UTR 25.0%
! ATCAATAATAGGAAAGGAAA+TGG + chr4_4:74427496-74427515 Msa0702690:five_prime_UTR 25.0%
!!! GTATAGTATGCATGTTTTAA+TGG + chr4_4:74427531-74427550 Msa0702690:five_prime_UTR 25.0%
! AGATATGAAGTCAAATTGAA+GGG - chr4_4:74427697-74427716 None:intergenic 25.0%
! CATATACTACACAATCTATA+GGG - chr4_4:74427842-74427861 None:intergenic 25.0%
! TCATATACTACACAATCTAT+AGG - chr4_4:74427843-74427862 None:intergenic 25.0%
! CATGTATTATATGTTTACCA+TGG + chr4_4:74427949-74427968 Msa0702690:five_prime_UTR 25.0%
!!! GTGAAAGCAATTTTAATAAG+TGG - chr4_4:74428275-74428294 None:intergenic 25.0%
! AATAAACAATAAATAGAGGG+TGG + chr4_4:74428326-74428345 Msa0702690:intron 25.0%
!!! GGTCATTTTTATAAGAAACA+TGG - chr4_4:74428591-74428610 None:intergenic 25.0%
! CATATACATATAAATGGTCA+CGG - chr4_4:74428651-74428670 None:intergenic 25.0%
! CACCTTATATATCATTCATA+TGG - chr4_4:74428838-74428857 None:intergenic 25.0%
! CATATGAATGATATATAAGG+TGG + chr4_4:74428836-74428855 Msa0702690:intron 25.0%
! TATGTCCAATATTGACAATT+GGG + chr4_4:74428877-74428896 Msa0702690:CDS 25.0%
! AAATCATTGTCTTTGTCATT+TGG - chr4_4:74428939-74428958 None:intergenic 25.0%
! TCAGCTATTTATGTATCATT+TGG + chr4_4:74429017-74429036 Msa0702690:CDS 25.0%
! AAGTGGTTCAAATTTCTTAT+GGG + chr4_4:74429096-74429115 Msa0702690:three_prime_UTR 25.0%
!! TCAACATATTTTGCATTCAA+AGG - chr4_4:74429337-74429356 None:intergenic 25.0%
! TTTGAATGCAAAATATGTTG+AGG + chr4_4:74429336-74429355 Msa0702690:three_prime_UTR 25.0%
TTATTGATACAAGCACAAGT+TGG - chr4_4:74427484-74427503 None:intergenic 30.0%
CTTGTGCTTGTATCAATAAT+AGG + chr4_4:74427485-74427504 Msa0702690:five_prime_UTR 30.0%
GCTTGTATCAATAATAGGAA+AGG + chr4_4:74427490-74427509 Msa0702690:five_prime_UTR 30.0%
CAGATATGAAGTCAAATTGA+AGG - chr4_4:74427698-74427717 None:intergenic 30.0%
! CAATTTGACTTCATATCTGA+TGG + chr4_4:74427699-74427718 Msa0702690:five_prime_UTR 30.0%
AATGAGTTCCTTCAAATTCT+TGG - chr4_4:74427796-74427815 None:intergenic 30.0%
! TATATGACCCTTTTCTTCAA+TGG + chr4_4:74427856-74427875 Msa0702690:five_prime_UTR 30.0%
! ATATGACCCTTTTCTTCAAT+GGG + chr4_4:74427857-74427876 Msa0702690:five_prime_UTR 30.0%
! GAAATTGGCATTGAAGATAT+AGG - chr4_4:74427988-74428007 None:intergenic 30.0%
CAAGAATGATATCTGCTTTA+TGG - chr4_4:74428119-74428138 None:intergenic 30.0%
TAAGGAATATAAAAAGGAGG+AGG - chr4_4:74428183-74428202 None:intergenic 30.0%
! TTGTTTTCAATGTGTGTCAA+TGG - chr4_4:74428432-74428451 None:intergenic 30.0%
TACATGATTCTGTTATGTGA+TGG - chr4_4:74428693-74428712 None:intergenic 30.0%
!! ACTGAATTTTGGTAGAGATT+TGG + chr4_4:74428785-74428804 Msa0702690:intron 30.0%
ATGAATGATATATAAGGTGG+TGG + chr4_4:74428839-74428858 Msa0702690:intron 30.0%
CTATGTCCAATATTGACAAT+TGG + chr4_4:74428876-74428895 Msa0702690:CDS 30.0%
TTTGAATTCAGCCAATCAAT+AGG - chr4_4:74428987-74429006 None:intergenic 30.0%
TTATGTATCATTTGGAAGCA+TGG + chr4_4:74429025-74429044 Msa0702690:CDS 30.0%
GGAATAGCATTAGGATTATT+AGG + chr4_4:74429073-74429092 Msa0702690:exon 30.0%
GAAGTGGTTCAAATTTCTTA+TGG + chr4_4:74429095-74429114 Msa0702690:three_prime_UTR 30.0%
ATTGAAGAAATGAGTTCAAG+TGG + chr4_4:74429160-74429179 Msa0702690:three_prime_UTR 30.0%
AAATGAGTTCAAGTGGAAAA+GGG + chr4_4:74429167-74429186 Msa0702690:three_prime_UTR 30.0%
GTTCTATCTAACAAAGCTAT+TGG + chr4_4:74429220-74429239 Msa0702690:three_prime_UTR 30.0%
TATCTAACAAAGCTATTGGT+TGG + chr4_4:74429224-74429243 Msa0702690:three_prime_UTR 30.0%
AGAGTTAAGGTAAATGAGAA+TGG + chr4_4:74429378-74429397 Msa0702690:three_prime_UTR 30.0%
GAGTTAAGGTAAATGAGAAT+GGG + chr4_4:74429379-74429398 Msa0702690:three_prime_UTR 30.0%
TTATTGATACAAGCACAAGT+TGG - chr4_4:74427484-74427503 None:intergenic 30.0%
CTTGTGCTTGTATCAATAAT+AGG + chr4_4:74427485-74427504 Msa0702690:five_prime_UTR 30.0%
GCTTGTATCAATAATAGGAA+AGG + chr4_4:74427490-74427509 Msa0702690:five_prime_UTR 30.0%
CAGATATGAAGTCAAATTGA+AGG - chr4_4:74427698-74427717 None:intergenic 30.0%
! CAATTTGACTTCATATCTGA+TGG + chr4_4:74427699-74427718 Msa0702690:five_prime_UTR 30.0%
AATGAGTTCCTTCAAATTCT+TGG - chr4_4:74427796-74427815 None:intergenic 30.0%
! TATATGACCCTTTTCTTCAA+TGG + chr4_4:74427856-74427875 Msa0702690:five_prime_UTR 30.0%
! ATATGACCCTTTTCTTCAAT+GGG + chr4_4:74427857-74427876 Msa0702690:five_prime_UTR 30.0%
! GAAATTGGCATTGAAGATAT+AGG - chr4_4:74427988-74428007 None:intergenic 30.0%
CAAGAATGATATCTGCTTTA+TGG - chr4_4:74428119-74428138 None:intergenic 30.0%
TAAGGAATATAAAAAGGAGG+AGG - chr4_4:74428183-74428202 None:intergenic 30.0%
! TTGTTTTCAATGTGTGTCAA+TGG - chr4_4:74428432-74428451 None:intergenic 30.0%
TACATGATTCTGTTATGTGA+TGG - chr4_4:74428693-74428712 None:intergenic 30.0%
!! ACTGAATTTTGGTAGAGATT+TGG + chr4_4:74428785-74428804 Msa0702690:intron 30.0%
ATGAATGATATATAAGGTGG+TGG + chr4_4:74428839-74428858 Msa0702690:intron 30.0%
CTATGTCCAATATTGACAAT+TGG + chr4_4:74428876-74428895 Msa0702690:CDS 30.0%
TTTGAATTCAGCCAATCAAT+AGG - chr4_4:74428987-74429006 None:intergenic 30.0%
TTATGTATCATTTGGAAGCA+TGG + chr4_4:74429025-74429044 Msa0702690:CDS 30.0%
GGAATAGCATTAGGATTATT+AGG + chr4_4:74429073-74429092 Msa0702690:exon 30.0%
GAAGTGGTTCAAATTTCTTA+TGG + chr4_4:74429095-74429114 Msa0702690:three_prime_UTR 30.0%
ATTGAAGAAATGAGTTCAAG+TGG + chr4_4:74429160-74429179 Msa0702690:three_prime_UTR 30.0%
AAATGAGTTCAAGTGGAAAA+GGG + chr4_4:74429167-74429186 Msa0702690:three_prime_UTR 30.0%
GTTCTATCTAACAAAGCTAT+TGG + chr4_4:74429220-74429239 Msa0702690:three_prime_UTR 30.0%
TATCTAACAAAGCTATTGGT+TGG + chr4_4:74429224-74429243 Msa0702690:three_prime_UTR 30.0%
AGAGTTAAGGTAAATGAGAA+TGG + chr4_4:74429378-74429397 Msa0702690:three_prime_UTR 30.0%
GAGTTAAGGTAAATGAGAAT+GGG + chr4_4:74429379-74429398 Msa0702690:three_prime_UTR 30.0%
! GTTTGCTGAATTGAAGCATT+GGG - chr4_4:74427585-74427604 None:intergenic 35.0%
AAAAGGAGTTAACGTCACAA+TGG + chr4_4:74427615-74427634 Msa0702690:five_prime_UTR 35.0%
!!! CATGGTTTTGGAGATGAAAA+TGG - chr4_4:74427647-74427666 None:intergenic 35.0%
AAATTGAAGGGTTGAAGGTA+AGG - chr4_4:74427685-74427704 None:intergenic 35.0%
AAGTCAAATTGAAGGGTTGA+AGG - chr4_4:74427690-74427709 None:intergenic 35.0%
ATATCTGATGGCTATGATGA+AGG + chr4_4:74427711-74427730 Msa0702690:five_prime_UTR 35.0%
! GGTTTTCATGTGAGATAGAT+AGG - chr4_4:74427766-74427785 None:intergenic 35.0%
CTATCTCACATGAAAACCAT+AGG + chr4_4:74427768-74427787 Msa0702690:five_prime_UTR 35.0%
CCAAAACCCATTGAAGAAAA+GGG - chr4_4:74427866-74427885 None:intergenic 35.0%
TCCAAAACCCATTGAAGAAA+AGG - chr4_4:74427867-74427886 None:intergenic 35.0%
! AGCCAAAGATTTGACTTACT+AGG + chr4_4:74427890-74427909 Msa0702690:five_prime_UTR 35.0%
CTCCTAGTAAGTCAAATCTT+TGG - chr4_4:74427895-74427914 None:intergenic 35.0%
!! TAGGAAGCTTTAAAAGTCCA+TGG - chr4_4:74427969-74427988 None:intergenic 35.0%
!! GTATCTTTGAGATCAAGCAA+AGG - chr4_4:74428024-74428043 None:intergenic 35.0%
ATAACCATCTCATAGTAAGC+AGG - chr4_4:74428078-74428097 None:intergenic 35.0%
TCATCAATTCCATAGACCTA+TGG + chr4_4:74428223-74428242 Msa0702690:intron 35.0%
ACTAATCTTCCATAGGTCTA+TGG - chr4_4:74428235-74428254 None:intergenic 35.0%
ATAGACCTATGGAAGATTAG+TGG + chr4_4:74428234-74428253 Msa0702690:intron 35.0%
GTTTCTTACGAAAAAATCGG+AGG - chr4_4:74428389-74428408 None:intergenic 35.0%
AAGTAAAAGGATGGAACTGT+TGG - chr4_4:74428903-74428922 None:intergenic 35.0%
! AACAGTTCCATCCTTTTACT+TGG + chr4_4:74428902-74428921 Msa0702690:CDS 35.0%
CAATAGGTGATGAGTCTAAT+TGG - chr4_4:74428971-74428990 None:intergenic 35.0%
TAGACTCATCACCTATTGAT+TGG + chr4_4:74428973-74428992 Msa0702690:CDS 35.0%
CTTTAGCATAGAGCAAATGA+AGG + chr4_4:74429052-74429071 Msa0702690:CDS 35.0%
GCAAATGAAGGAATAGCATT+AGG + chr4_4:74429064-74429083 Msa0702690:exon 35.0%
GCATTAGGATTATTAGGAAG+TGG + chr4_4:74429079-74429098 Msa0702690:exon 35.0%
CTTATGGGTAATCCCTAATA+TGG + chr4_4:74429111-74429130 Msa0702690:three_prime_UTR 35.0%
GAAATGAGTTCAAGTGGAAA+AGG + chr4_4:74429166-74429185 Msa0702690:three_prime_UTR 35.0%
TTAGATAGAACTTCCAACTG+TGG - chr4_4:74429211-74429230 None:intergenic 35.0%
!! ACACTTGAAGCATTGTGTTT+AGG + chr4_4:74429275-74429294 Msa0702690:three_prime_UTR 35.0%
CAAAATATGTTGAGGATGTG+TGG + chr4_4:74429344-74429363 Msa0702690:three_prime_UTR 35.0%
! GTTTGCTGAATTGAAGCATT+GGG - chr4_4:74427585-74427604 None:intergenic 35.0%
AAAAGGAGTTAACGTCACAA+TGG + chr4_4:74427615-74427634 Msa0702690:five_prime_UTR 35.0%
!!! CATGGTTTTGGAGATGAAAA+TGG - chr4_4:74427647-74427666 None:intergenic 35.0%
AAATTGAAGGGTTGAAGGTA+AGG - chr4_4:74427685-74427704 None:intergenic 35.0%
AAGTCAAATTGAAGGGTTGA+AGG - chr4_4:74427690-74427709 None:intergenic 35.0%
ATATCTGATGGCTATGATGA+AGG + chr4_4:74427711-74427730 Msa0702690:five_prime_UTR 35.0%
! GGTTTTCATGTGAGATAGAT+AGG - chr4_4:74427766-74427785 None:intergenic 35.0%
CTATCTCACATGAAAACCAT+AGG + chr4_4:74427768-74427787 Msa0702690:five_prime_UTR 35.0%
CCAAAACCCATTGAAGAAAA+GGG - chr4_4:74427866-74427885 None:intergenic 35.0%
TCCAAAACCCATTGAAGAAA+AGG - chr4_4:74427867-74427886 None:intergenic 35.0%
! AGCCAAAGATTTGACTTACT+AGG + chr4_4:74427890-74427909 Msa0702690:five_prime_UTR 35.0%
CTCCTAGTAAGTCAAATCTT+TGG - chr4_4:74427895-74427914 None:intergenic 35.0%
!! TAGGAAGCTTTAAAAGTCCA+TGG - chr4_4:74427969-74427988 None:intergenic 35.0%
!! GTATCTTTGAGATCAAGCAA+AGG - chr4_4:74428024-74428043 None:intergenic 35.0%
ATAACCATCTCATAGTAAGC+AGG - chr4_4:74428078-74428097 None:intergenic 35.0%
TCATCAATTCCATAGACCTA+TGG + chr4_4:74428223-74428242 Msa0702690:intron 35.0%
ACTAATCTTCCATAGGTCTA+TGG - chr4_4:74428235-74428254 None:intergenic 35.0%
ATAGACCTATGGAAGATTAG+TGG + chr4_4:74428234-74428253 Msa0702690:intron 35.0%
GTTTCTTACGAAAAAATCGG+AGG - chr4_4:74428389-74428408 None:intergenic 35.0%
AAGTAAAAGGATGGAACTGT+TGG - chr4_4:74428903-74428922 None:intergenic 35.0%
! AACAGTTCCATCCTTTTACT+TGG + chr4_4:74428902-74428921 Msa0702690:CDS 35.0%
CAATAGGTGATGAGTCTAAT+TGG - chr4_4:74428971-74428990 None:intergenic 35.0%
TAGACTCATCACCTATTGAT+TGG + chr4_4:74428973-74428992 Msa0702690:CDS 35.0%
CTTTAGCATAGAGCAAATGA+AGG + chr4_4:74429052-74429071 Msa0702690:CDS 35.0%
GCAAATGAAGGAATAGCATT+AGG + chr4_4:74429064-74429083 Msa0702690:exon 35.0%
GCATTAGGATTATTAGGAAG+TGG + chr4_4:74429079-74429098 Msa0702690:exon 35.0%
CTTATGGGTAATCCCTAATA+TGG + chr4_4:74429111-74429130 Msa0702690:three_prime_UTR 35.0%
GAAATGAGTTCAAGTGGAAA+AGG + chr4_4:74429166-74429185 Msa0702690:three_prime_UTR 35.0%
TTAGATAGAACTTCCAACTG+TGG - chr4_4:74429211-74429230 None:intergenic 35.0%
!! ACACTTGAAGCATTGTGTTT+AGG + chr4_4:74429275-74429294 Msa0702690:three_prime_UTR 35.0%
CAAAATATGTTGAGGATGTG+TGG + chr4_4:74429344-74429363 Msa0702690:three_prime_UTR 35.0%
GGTTTATGTGACCTTGACTT+GGG - chr4_4:74427564-74427583 None:intergenic 40.0%
! CGTTTGCTGAATTGAAGCAT+TGG - chr4_4:74427586-74427605 None:intergenic 40.0%
AGCAAACGTTTGAGCACAAA+AGG + chr4_4:74427598-74427617 Msa0702690:five_prime_UTR 40.0%
!! ATGATGGAGATGCATGGTTT+TGG - chr4_4:74427659-74427678 None:intergenic 40.0%
GTTGAAGGTAAGGATGATGA+TGG - chr4_4:74427675-74427694 None:intergenic 40.0%
CTTCAAATTCTTGGAGCCTA+TGG - chr4_4:74427787-74427806 None:intergenic 40.0%
CATAGGCTCCAAGAATTTGA+AGG + chr4_4:74427785-74427804 Msa0702690:five_prime_UTR 40.0%
!! CCCTTTTCTTCAATGGGTTT+TGG + chr4_4:74427863-74427882 Msa0702690:five_prime_UTR 40.0%
TCAATGCCAATTTCTATGCC+AGG + chr4_4:74427994-74428013 Msa0702690:exon 40.0%
CAATGCCAATTTCTATGCCA+GGG + chr4_4:74427995-74428014 Msa0702690:exon 40.0%
AGGGTCATAAACAAAGGAAG+GGG - chr4_4:74428046-74428065 None:intergenic 40.0%
CAGGGTCATAAACAAAGGAA+GGG - chr4_4:74428047-74428066 None:intergenic 40.0%
CTATCCTGCTTACTATGAGA+TGG + chr4_4:74428071-74428090 Msa0702690:CDS 40.0%
TGTGTCCACTAATCTTCCAT+AGG - chr4_4:74428242-74428261 None:intergenic 40.0%
GTTGGCCCAATTGTCAATAT+TGG - chr4_4:74428885-74428904 None:intergenic 40.0%
! TCCATCCTTTTACTTGGACA+AGG + chr4_4:74428908-74428927 Msa0702690:CDS 40.0%
! CCATCCTTTTACTTGGACAA+GGG + chr4_4:74428909-74428928 Msa0702690:CDS 40.0%
TACTCCCTTGTCCAAGTAAA+AGG - chr4_4:74428916-74428935 None:intergenic 40.0%
ACATAAATAGCTGACCCTTC+AGG - chr4_4:74429011-74429030 None:intergenic 40.0%
!! GAAAAGGGTTGGTAGTGAAT+TGG + chr4_4:74429182-74429201 Msa0702690:three_prime_UTR 40.0%
AGTGAATTGGATACCACAGT+TGG + chr4_4:74429195-74429214 Msa0702690:three_prime_UTR 40.0%
!! GTTGGCTTTCTAACACATAG+TGG + chr4_4:74429242-74429261 Msa0702690:three_prime_UTR 40.0%
! GCTTTCTAACACATAGTGGA+TGG + chr4_4:74429246-74429265 Msa0702690:three_prime_UTR 40.0%
!! ATTGTGTTTAGGAGTGCCTA+TGG + chr4_4:74429286-74429305 Msa0702690:three_prime_UTR 40.0%
GGAAAGTGGAATGAGAGTTA+AGG + chr4_4:74429365-74429384 Msa0702690:three_prime_UTR 40.0%
GGTTTATGTGACCTTGACTT+GGG - chr4_4:74427564-74427583 None:intergenic 40.0%
! CGTTTGCTGAATTGAAGCAT+TGG - chr4_4:74427586-74427605 None:intergenic 40.0%
AGCAAACGTTTGAGCACAAA+AGG + chr4_4:74427598-74427617 Msa0702690:five_prime_UTR 40.0%
!! ATGATGGAGATGCATGGTTT+TGG - chr4_4:74427659-74427678 None:intergenic 40.0%
GTTGAAGGTAAGGATGATGA+TGG - chr4_4:74427675-74427694 None:intergenic 40.0%
CTTCAAATTCTTGGAGCCTA+TGG - chr4_4:74427787-74427806 None:intergenic 40.0%
CATAGGCTCCAAGAATTTGA+AGG + chr4_4:74427785-74427804 Msa0702690:five_prime_UTR 40.0%
!! CCCTTTTCTTCAATGGGTTT+TGG + chr4_4:74427863-74427882 Msa0702690:five_prime_UTR 40.0%
TCAATGCCAATTTCTATGCC+AGG + chr4_4:74427994-74428013 Msa0702690:exon 40.0%
CAATGCCAATTTCTATGCCA+GGG + chr4_4:74427995-74428014 Msa0702690:exon 40.0%
AGGGTCATAAACAAAGGAAG+GGG - chr4_4:74428046-74428065 None:intergenic 40.0%
CAGGGTCATAAACAAAGGAA+GGG - chr4_4:74428047-74428066 None:intergenic 40.0%
CTATCCTGCTTACTATGAGA+TGG + chr4_4:74428071-74428090 Msa0702690:CDS 40.0%
TGTGTCCACTAATCTTCCAT+AGG - chr4_4:74428242-74428261 None:intergenic 40.0%
GTTGGCCCAATTGTCAATAT+TGG - chr4_4:74428885-74428904 None:intergenic 40.0%
! TCCATCCTTTTACTTGGACA+AGG + chr4_4:74428908-74428927 Msa0702690:CDS 40.0%
! CCATCCTTTTACTTGGACAA+GGG + chr4_4:74428909-74428928 Msa0702690:CDS 40.0%
TACTCCCTTGTCCAAGTAAA+AGG - chr4_4:74428916-74428935 None:intergenic 40.0%
ACATAAATAGCTGACCCTTC+AGG - chr4_4:74429011-74429030 None:intergenic 40.0%
!! GAAAAGGGTTGGTAGTGAAT+TGG + chr4_4:74429182-74429201 Msa0702690:three_prime_UTR 40.0%
AGTGAATTGGATACCACAGT+TGG + chr4_4:74429195-74429214 Msa0702690:three_prime_UTR 40.0%
!! GTTGGCTTTCTAACACATAG+TGG + chr4_4:74429242-74429261 Msa0702690:three_prime_UTR 40.0%
! GCTTTCTAACACATAGTGGA+TGG + chr4_4:74429246-74429265 Msa0702690:three_prime_UTR 40.0%
!! ATTGTGTTTAGGAGTGCCTA+TGG + chr4_4:74429286-74429305 Msa0702690:three_prime_UTR 40.0%
GGAAAGTGGAATGAGAGTTA+AGG + chr4_4:74429365-74429384 Msa0702690:three_prime_UTR 40.0%
ATGGTTCCATACCCAAGTCA+AGG + chr4_4:74427550-74427569 Msa0702690:five_prime_UTR 45.0%
!! ATGTGACCTTGACTTGGGTA+TGG - chr4_4:74427559-74427578 None:intergenic 45.0%
GGGTTTATGTGACCTTGACT+TGG - chr4_4:74427565-74427584 None:intergenic 45.0%
!! AGGATGATGATGGAGATGCA+TGG - chr4_4:74427665-74427684 None:intergenic 45.0%
TCTGATGGCTATGATGAAGG+TGG + chr4_4:74427714-74427733 Msa0702690:five_prime_UTR 45.0%
CCAGGGTCATAAACAAAGGA+AGG - chr4_4:74428048-74428067 None:intergenic 45.0%
! CCTTCCTTTGTTTATGACCC+TGG + chr4_4:74428045-74428064 Msa0702690:CDS 45.0%
GAAGCCAGGGTCATAAACAA+AGG - chr4_4:74428052-74428071 None:intergenic 45.0%
AGTAAGCAGGATAGAAGCCA+GGG - chr4_4:74428065-74428084 None:intergenic 45.0%
TAGTAAGCAGGATAGAAGCC+AGG - chr4_4:74428066-74428085 None:intergenic 45.0%
!! CTGGTCTTCTAGCTTGTAGA+AGG - chr4_4:74428148-74428167 None:intergenic 45.0%
CTTCTACAAGCTAGAAGACC+AGG + chr4_4:74428146-74428165 Msa0702690:CDS 45.0%
GAGGAGGTGAGTAAAAAACC+TGG - chr4_4:74428167-74428186 None:intergenic 45.0%
CCCTTGTCCAAGTAAAAGGA+TGG - chr4_4:74428912-74428931 None:intergenic 45.0%
TGGCTGAATTCAAAGCCTGA+AGG + chr4_4:74428993-74429012 Msa0702690:CDS 45.0%
GGCTGAATTCAAAGCCTGAA+GGG + chr4_4:74428994-74429013 Msa0702690:CDS 45.0%
GAGTTCAAGTGGAAAAGGGT+TGG + chr4_4:74429171-74429190 Msa0702690:three_prime_UTR 45.0%
CACTGTGGTATTGCAACCAT+AGG - chr4_4:74429305-74429324 None:intergenic 45.0%
! CAAAGGTTGATCAGTCACTG+TGG - chr4_4:74429320-74429339 None:intergenic 45.0%
TGTTGAGGATGTGTGGAAAG+TGG + chr4_4:74429351-74429370 Msa0702690:three_prime_UTR 45.0%
ATGGTTCCATACCCAAGTCA+AGG + chr4_4:74427550-74427569 Msa0702690:five_prime_UTR 45.0%
!! ATGTGACCTTGACTTGGGTA+TGG - chr4_4:74427559-74427578 None:intergenic 45.0%
GGGTTTATGTGACCTTGACT+TGG - chr4_4:74427565-74427584 None:intergenic 45.0%
!! AGGATGATGATGGAGATGCA+TGG - chr4_4:74427665-74427684 None:intergenic 45.0%
TCTGATGGCTATGATGAAGG+TGG + chr4_4:74427714-74427733 Msa0702690:five_prime_UTR 45.0%
CCAGGGTCATAAACAAAGGA+AGG - chr4_4:74428048-74428067 None:intergenic 45.0%
! CCTTCCTTTGTTTATGACCC+TGG + chr4_4:74428045-74428064 Msa0702690:CDS 45.0%
GAAGCCAGGGTCATAAACAA+AGG - chr4_4:74428052-74428071 None:intergenic 45.0%
AGTAAGCAGGATAGAAGCCA+GGG - chr4_4:74428065-74428084 None:intergenic 45.0%
TAGTAAGCAGGATAGAAGCC+AGG - chr4_4:74428066-74428085 None:intergenic 45.0%
!! CTGGTCTTCTAGCTTGTAGA+AGG - chr4_4:74428148-74428167 None:intergenic 45.0%
CTTCTACAAGCTAGAAGACC+AGG + chr4_4:74428146-74428165 Msa0702690:CDS 45.0%
GAGGAGGTGAGTAAAAAACC+TGG - chr4_4:74428167-74428186 None:intergenic 45.0%
CCCTTGTCCAAGTAAAAGGA+TGG - chr4_4:74428912-74428931 None:intergenic 45.0%
TGGCTGAATTCAAAGCCTGA+AGG + chr4_4:74428993-74429012 Msa0702690:CDS 45.0%
GGCTGAATTCAAAGCCTGAA+GGG + chr4_4:74428994-74429013 Msa0702690:CDS 45.0%
GAGTTCAAGTGGAAAAGGGT+TGG + chr4_4:74429171-74429190 Msa0702690:three_prime_UTR 45.0%
CACTGTGGTATTGCAACCAT+AGG - chr4_4:74429305-74429324 None:intergenic 45.0%
! CAAAGGTTGATCAGTCACTG+TGG - chr4_4:74429320-74429339 None:intergenic 45.0%
TGTTGAGGATGTGTGGAAAG+TGG + chr4_4:74429351-74429370 Msa0702690:three_prime_UTR 45.0%
! GAAGGTGGCTTTGCTCAAGT+TGG + chr4_4:74427729-74427748 Msa0702690:five_prime_UTR 50.0%
GGAAGCCCTGGCATAGAAAT+TGG - chr4_4:74428003-74428022 None:intergenic 50.0%
AGATCAAGCAAAGGAAGCCC+TGG - chr4_4:74428015-74428034 None:intergenic 50.0%
! GAAGGTGGCTTTGCTCAAGT+TGG + chr4_4:74427729-74427748 Msa0702690:five_prime_UTR 50.0%
GGAAGCCCTGGCATAGAAAT+TGG - chr4_4:74428003-74428022 None:intergenic 50.0%
AGATCAAGCAAAGGAAGCCC+TGG - chr4_4:74428015-74428034 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 74427474 74429412 74427474 ID=Msa0702690;Name=Msa0702690
chr4_4 mRNA 74427474 74429412 74427474 ID=Msa0702690-mRNA-1;Parent=Msa0702690;Name=Msa0702690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=523|1|1|1|1|1|2|333|131
chr4_4 exon 74427474 74428167 74427474 ID=Msa0702690-mRNA-1:exon:23137;Parent=Msa0702690-mRNA-1
chr4_4 exon 74428855 74429412 74428855 ID=Msa0702690-mRNA-1:exon:23138;Parent=Msa0702690-mRNA-1
chr4_4 five_prime_UTR 74427474 74427996 74427474 ID=Msa0702690-mRNA-1:five_prime_utr;Parent=Msa0702690-mRNA-1
chr4_4 CDS 74427997 74428167 74427997 ID=Msa0702690-mRNA-1:cds;Parent=Msa0702690-mRNA-1
chr4_4 CDS 74428855 74429079 74428855 ID=Msa0702690-mRNA-1:cds;Parent=Msa0702690-mRNA-1
chr4_4 three_prime_UTR 74429080 74429412 74429080 ID=Msa0702690-mRNA-1:three_prime_utr;Parent=Msa0702690-mRNA-1
Gene Sequence

>Msa0702690

ATGCCAATTTCTATGCCAGGGCTTCCTTTGCTTGATCTCAAAGATACCCCTTCCTTTGTTTATGACCCTGGCTTCTATCCTGCTTACTATGAGATGGTTATGAATCAATATTCTAACATCCATAAAGCAGATATCATTCTTGTCAATTCCTTCTACAAGCTAGAAGACCAGGTGGTGGATTCTATGTCAAAGCTATGTCCAATATTGACAATTGGGCCAACAGTTCCATCCTTTTACTTGGACAAGGGAGTACCAAATGACAAAGACAATGATTTGAATCTCTTCCAATTAGACTCATCACCTATTGATTGGCTGAATTCAAAGCCTGAAGGGTCAGCTATTTATGTATCATTTGGAAGCATGGTATGCTTTAGCATAGAGCAAATGAAGGAATAG
Protein sequence

>Msa0702690

MPISMPGLPLLDLKDTPSFVYDPGFYPAYYEMVMNQYSNIHKADIILVNSFYKLEDQVVDSMSKLCPILTIGPTVPSFYLDKGVPNDKDNDLNLFQLDSSPIDWLNSKPEGSAIYVSFGSMVCFSIEQMKE*