AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1357990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357990 MtrunA17_Chr5g0397621 98.105 897 17 0 104 1000 14 910 0.0 1793
Msa1357990 MtrunA17_Chr8g0339181 56.217 941 401 6 47 981 22 957 0.0 1031
Msa1357990 MtrunA17_Chr8g0374321 67.595 682 208 7 12 686 14 689 0.0 944
Msa1357990 MtrunA17_Chr2g0297051 49.893 938 446 9 56 976 84 1014 0.0 864
Msa1357990 MtrunA17_Chr2g0297051 32.432 148 94 1 124 265 74 221 4.53e-16 83.6
Msa1357990 MtrunA17_Chr2g0297051 25.532 188 124 3 38 225 149 320 1.12e-11 69.3
Msa1357990 MtrunA17_Chr4g0052521 48.791 951 458 9 56 983 45 989 0.0 852
Msa1357990 MtrunA17_Chr4g0052521 28.188 149 102 2 38 186 112 255 7.36e-12 69.7
Msa1357990 MtrunA17_Chr4g0052521 30.233 172 95 4 111 257 12 183 2.51e-11 68.2
Msa1357990 MtrunA17_Chr4g0050431 39.470 641 349 8 351 971 287 908 1.63e-129 415
Msa1357990 MtrunA17_Chr8g0374331 79.839 248 50 0 742 989 1 248 7.73e-129 390
Msa1357990 MtrunA17_Chr8g0374391 79.668 241 49 0 749 989 1 241 2.05e-124 378
Msa1357990 MtrunA17_Chr3g0136331 35.659 645 375 11 361 975 251 885 3.41e-111 365
Msa1357990 MtrunA17_Chr8g0374371 81.283 187 34 1 435 620 1 187 1.17e-104 325
Msa1357990 MtrunA17_Chr2g0297871 30.743 592 349 15 421 996 22 568 6.49e-71 249
Msa1357990 MtrunA17_Chr4g0071991 32.008 528 327 11 401 924 160 659 1.29e-70 254
Msa1357990 MtrunA17_Chr5g0397631 87.000 100 9 1 1 100 1 96 2.24e-49 181
Msa1357990 MtrunA17_Chr4g0053441 28.892 623 379 20 366 950 173 769 1.19e-46 180
Msa1357990 MtrunA17_Chr8g0335291 22.540 559 341 16 458 950 152 684 2.37e-21 100
Msa1357990 MtrunA17_Chr1g0148031 23.679 549 324 15 458 939 144 664 3.18e-21 100
Msa1357990 MtrunA17_Chr5g0401211 34.659 176 86 4 785 931 650 825 7.65e-21 99.0
Msa1357990 MtrunA17_Chr6g0452721 23.656 558 337 18 458 950 146 679 8.69e-21 99.0
Msa1357990 MtrunA17_Chr4g0072131 22.878 542 337 13 458 939 147 667 2.42e-20 97.4
Msa1357990 MtrunA17_Chr3g0138931 22.587 549 330 15 458 939 144 664 6.40e-20 95.9
Msa1357990 MtrunA17_Chr3g0134771 33.152 184 94 4 777 931 644 827 7.01e-20 95.9
Msa1357990 MtrunA17_Chr4g0054021 34.091 176 87 4 785 931 573 748 2.44e-19 94.0
Msa1357990 MtrunA17_Chr2g0333721 22.569 545 330 16 458 931 142 665 2.62e-19 94.0
Msa1357990 MtrunA17_Chr8g0382071 33.333 177 89 4 786 933 651 827 3.53e-17 87.0
Msa1357990 MtrunA17_Chr7g0263361 32.911 158 74 3 785 910 628 785 5.47e-17 86.7
Msa1357990 MtrunA17_Chr8g0340261 31.953 169 82 4 775 910 184 352 1.04e-16 84.7
Msa1357990 MtrunA17_Chr2g0298871 29.282 181 95 2 786 933 699 879 4.36e-16 83.6
Msa1357990 MtrunA17_Chr6g0456201 31.646 158 76 3 785 910 643 800 5.21e-16 83.2
Msa1357990 MtrunA17_Chr4g0020551 32.184 174 90 3 786 931 587 760 5.22e-16 83.2
Msa1357990 MtrunA17_Chr7g0260401 31.250 160 76 2 785 910 674 833 8.35e-16 82.8
Msa1357990 MtrunA17_Chr8g0346461 31.875 160 75 2 785 910 621 780 1.08e-15 82.4
Msa1357990 MtrunA17_Chr4g0002331 30.387 181 93 3 786 933 712 892 1.45e-15 82.0
Msa1357990 MtrunA17_Chr4g0059961 28.283 198 107 4 785 950 487 681 9.06e-15 79.3
Msa1357990 MtrunA17_Chr2g0298031 28.723 188 101 3 782 939 486 670 1.10e-14 79.0
Msa1357990 MtrunA17_Chr1g0173111 31.429 175 91 4 786 931 648 822 1.48e-14 78.6
Msa1357990 MtrunA17_Chr7g0276551 28.788 198 105 4 785 950 249 442 1.50e-14 78.2
Msa1357990 MtrunA17_Chr8g0381711 23.454 388 217 9 605 913 286 672 2.20e-14 77.8
Msa1357990 MtrunA17_Chr3g0134951 30.573 157 78 1 785 910 585 741 3.50e-14 77.4
Msa1357990 MtrunA17_Chr1g0147981 28.205 195 100 4 782 946 497 681 4.40e-14 77.0
Msa1357990 MtrunA17_Chr8g0365021 28.205 195 100 4 782 946 550 734 5.09e-14 77.0
Msa1357990 MtrunA17_Chr4g0065481 28.205 195 100 4 782 946 481 665 5.73e-14 76.6
Msa1357990 MtrunA17_Chr2g0304941 28.824 170 91 2 785 924 484 653 2.73e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1357990 AT1G63440.1 73.716 993 252 5 3 989 4 993 0.0 1489
Msa1357990 AT5G44790.1 50.530 944 444 9 56 983 62 998 0.0 891
Msa1357990 AT5G44790.1 33.083 133 88 1 131 262 59 191 2.02e-14 78.6
Msa1357990 AT5G44790.1 27.778 162 110 2 48 206 131 288 2.55e-14 78.2
Msa1357990 AT4G33520.2 35.226 863 439 24 132 971 152 917 5.14e-116 380
Msa1357990 AT5G21930.2 34.595 740 416 18 287 981 167 883 4.31e-115 375
Msa1357990 AT5G21930.1 34.595 740 416 18 287 981 167 883 4.31e-115 375
Msa1357990 AT4G33520.3 35.110 863 440 24 132 971 152 917 8.40e-115 376
Msa1357990 AT5G21930.3 33.108 740 404 19 287 981 167 860 1.67e-102 341
Msa1357990 AT5G21930.4 33.788 660 371 18 287 902 167 804 1.22e-91 310
Msa1357990 AT4G30110.1 32.895 532 322 12 399 924 153 655 3.58e-76 270
Msa1357990 AT4G30110.2 32.895 532 322 12 399 924 153 655 3.58e-76 270
Msa1357990 AT2G19110.2 31.676 543 329 14 401 938 166 671 4.81e-69 251
Msa1357990 AT2G19110.3 31.676 543 329 14 401 938 166 671 4.81e-69 251
Msa1357990 AT2G19110.1 31.676 543 329 14 401 938 166 671 4.81e-69 251
Msa1357990 AT4G30120.2 30.836 347 212 6 403 746 4 325 4.60e-45 167
Msa1357990 AT4G37270.1 28.523 596 370 18 366 924 169 745 1.24e-43 171
Msa1357990 AT4G30120.1 30.836 347 212 6 403 746 163 484 1.62e-43 167
Msa1357990 AT2G41560.1 24.912 570 321 14 468 933 255 821 7.79e-28 122
Msa1357990 AT2G41560.2 24.912 570 321 14 468 933 153 719 7.85e-28 122
Msa1357990 AT2G41560.3 24.912 570 321 14 468 933 153 719 7.85e-28 122
Msa1357990 AT2G41560.4 24.912 570 321 14 468 933 153 719 7.85e-28 122
Msa1357990 AT1G17260.1 23.327 553 317 15 457 931 149 672 3.78e-23 107
Msa1357990 AT5G62670.1 23.784 555 340 17 458 950 146 679 3.24e-22 103
Msa1357990 AT3G60330.4 22.887 568 341 18 448 950 140 675 2.02e-21 101
Msa1357990 AT3G60330.3 22.887 568 341 18 448 950 140 675 2.02e-21 101
Msa1357990 AT3G60330.2 22.711 568 342 18 448 950 140 675 4.74e-21 100
Msa1357990 AT3G60330.1 22.711 568 342 18 448 950 140 675 4.74e-21 100
Msa1357990 AT3G47950.1 23.243 555 343 17 458 950 150 683 8.69e-21 99.4
Msa1357990 AT3G47950.2 23.243 555 343 17 458 950 150 683 8.69e-21 99.4
Msa1357990 AT3G22910.1 23.105 554 313 16 468 910 245 796 1.13e-20 99.0
Msa1357990 AT2G24520.2 23.949 547 325 16 458 939 187 707 1.18e-19 95.5
Msa1357990 AT2G24520.3 23.949 547 325 16 458 939 124 644 1.41e-19 95.1
Msa1357990 AT2G24520.1 23.949 547 325 16 458 939 124 644 1.41e-19 95.1
Msa1357990 AT1G27770.4 34.659 176 86 5 785 931 653 828 1.69e-19 95.1
Msa1357990 AT1G27770.1 34.659 176 86 5 785 931 653 828 1.69e-19 95.1
Msa1357990 AT1G27770.3 34.659 176 86 5 785 931 590 765 1.95e-19 94.7
Msa1357990 AT2G18960.1 22.482 556 329 16 458 946 142 662 2.36e-19 94.7
Msa1357990 AT2G18960.3 22.482 556 329 16 458 946 78 598 2.39e-19 94.4
Msa1357990 AT2G18960.2 22.482 556 329 16 458 946 78 598 2.39e-19 94.4
Msa1357990 AT2G07560.1 22.285 534 317 17 455 920 144 647 2.75e-19 94.4
Msa1357990 AT4G37640.1 33.523 176 88 4 785 931 650 825 3.50e-19 94.0
Msa1357990 AT2G22950.1 33.523 176 88 4 785 931 651 826 8.22e-19 92.8
Msa1357990 AT3G57330.1 32.402 179 93 2 783 933 640 818 1.36e-18 92.0
Msa1357990 AT3G57330.2 32.402 179 93 2 783 933 585 763 1.68e-18 91.7
Msa1357990 AT1G07670.2 31.646 158 76 3 785 910 623 780 7.11e-17 86.7
Msa1357990 AT1G07670.1 31.646 158 76 3 785 910 623 780 7.11e-17 86.7
Msa1357990 AT1G07810.1 31.646 158 76 3 785 910 623 780 8.50e-17 86.3
Msa1357990 AT3G63380.1 32.704 159 74 2 785 910 642 800 2.00e-16 85.1
Msa1357990 AT3G21180.1 30.939 181 92 3 786 933 694 874 2.91e-16 84.7
Msa1357990 AT5G57110.1 29.282 181 95 2 786 933 677 857 3.09e-16 84.7
Msa1357990 AT5G57110.3 29.282 181 95 2 786 933 677 857 3.09e-16 84.7
Msa1357990 AT5G57110.2 29.282 181 95 2 786 933 677 857 3.09e-16 84.7
Msa1357990 AT4G29900.1 30.387 181 93 3 786 933 681 861 5.65e-16 83.6
Msa1357990 AT4G29900.2 30.387 181 93 3 786 933 681 861 5.65e-16 83.6
Msa1357990 AT2G24520.4 24.500 400 226 11 606 939 12 401 1.01e-15 82.4
Msa1357990 AT1G10130.1 30.573 157 78 1 785 910 584 740 7.40e-15 80.1
Msa1357990 AT5G57350.3 29.231 195 98 4 782 946 217 401 9.01e-15 79.3
Msa1357990 AT5G57350.4 29.231 195 98 4 782 946 479 663 1.31e-14 79.3
Msa1357990 AT5G57350.2 29.231 195 98 4 782 946 479 663 1.31e-14 79.3
Msa1357990 AT5G57350.1 29.231 195 98 4 782 946 479 663 1.31e-14 79.3
Msa1357990 AT4G00900.2 30.625 160 77 2 785 910 617 776 3.02e-14 78.2
Msa1357990 AT4G00900.1 30.625 160 77 2 785 910 617 776 3.02e-14 78.2
Msa1357990 AT4G30190.1 28.205 195 100 4 782 946 478 662 8.32e-14 76.6
Msa1357990 AT3G42640.1 30.769 169 86 3 782 920 481 648 1.42e-13 75.9
Msa1357990 AT1G80660.2 27.568 185 96 3 785 931 357 541 7.15e-13 73.6
Msa1357990 AT1G80660.1 29.518 166 86 3 785 920 486 650 7.98e-13 73.6
Msa1357990 AT1G80660.4 29.518 166 86 3 785 920 486 650 9.26e-13 73.2
Msa1357990 AT1G80660.3 29.518 166 86 3 785 920 486 650 9.41e-13 73.2

Find 225 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAATTATGTTTGGGCTTT+GGG 0.163205 tig0016220:-111109 Msa1357990:CDS
TTCTGATGGGCTTGTTGTTT+GGG 0.168913 tig0016220:-113844 Msa1357990:CDS
TACCAAAGGCACAAAGTATT+TGG 0.170253 tig0016220:+113602 None:intergenic
GCAAATAATGGTCGGTAATA+AGG 0.177452 tig0016220:-112314 Msa1357990:CDS
GTCAAGGCTGTTCAGCTTCT+TGG 0.179922 tig0016220:+110937 None:intergenic
CTTCTGATGGGCTTGTTGTT+TGG 0.184672 tig0016220:-113845 Msa1357990:CDS
ACTGGTCCCCGCCTCGTCTT+TGG 0.216916 tig0016220:+116250 None:intergenic
ATTGCCTGCCCTTGTGCTTT+GGG 0.277345 tig0016220:-113308 Msa1357990:CDS
CATCTACAGCTTCCAAGATT+TGG 0.282832 tig0016220:+114741 None:intergenic
CCTCAATTATGTTTGGGCTT+TGG 0.283004 tig0016220:-111110 Msa1357990:CDS
CTTCTGTTGCTAAAGCTACT+TGG 0.285373 tig0016220:+114804 None:intergenic
GAAACAAAATCTCGGGCTTC+TGG 0.288098 tig0016220:+112376 None:intergenic
TTTGAGGGCTGCTACTTCTA+AGG 0.296547 tig0016220:-114117 Msa1357990:CDS
TACTGCTATATTGTTGAGTT+TGG 0.296733 tig0016220:-113961 Msa1357990:CDS
TTCCAAATACTTTGTGCCTT+TGG 0.299972 tig0016220:-113604 Msa1357990:intron
AATTCCATGTAGCCGTTTGA+TGG 0.301047 tig0016220:+116130 None:intergenic
TATTGCCTGCCCTTGTGCTT+TGG 0.308202 tig0016220:-113309 Msa1357990:CDS
GAGTTTGATCATGGCATTAT+TGG 0.311760 tig0016220:+114640 None:intergenic
CTTATTTCGTTTATTCTGTT+AGG 0.315628 tig0016220:-114056 Msa1357990:CDS
AGCCACACCTACTGCTGTTA+TGG 0.315710 tig0016220:-113282 Msa1357990:CDS
TTCTAAAGTCTATGAAAATT+AGG 0.317325 tig0016220:-112123 Msa1357990:CDS
AAGATGAAGAGAACCCTTCT+TGG 0.320952 tig0016220:-112399 Msa1357990:CDS
CACTGGAGTTGGTGCATCTC+AGG 0.324242 tig0016220:-113255 Msa1357990:CDS
TCTTATAAAGCAGACATAAC+AGG 0.327815 tig0016220:-114542 Msa1357990:CDS
CGGTTGCCGCCTTGGATCGC+TGG 0.329851 tig0016220:-111028 Msa1357990:CDS
GAAGACGGTATCCAGGATTT+CGG 0.331287 tig0016220:+113380 None:intergenic
TGATGTGATTAAGATTATTC+CGG 0.335725 tig0016220:-113880 Msa1357990:CDS
AAATGCGATCAGCAAACTTC+TGG 0.335934 tig0016220:+113625 None:intergenic
CAGGCTTTCGGTTGCCGCCT+TGG 0.339159 tig0016220:-111036 Msa1357990:CDS
TCAAGGCTGTTCAGCTTCTT+GGG 0.342772 tig0016220:+110938 None:intergenic
GTATACGCCTCAATTATGTT+TGG 0.343337 tig0016220:-111117 Msa1357990:CDS
GTATGCCGTATACAAATAAA+AGG 0.345506 tig0016220:-114896 Msa1357990:CDS
ATGGCGAAGGGAATGTTGTT+GGG 0.353350 tig0016220:-113938 Msa1357990:CDS
CTCAACAATATAGCAGTATC+AGG 0.355057 tig0016220:+113966 None:intergenic
ATCTCTTCTTCCACCTTCAC+TGG 0.360798 tig0016220:+114454 None:intergenic
TATACGCCTCAATTATGTTT+GGG 0.364978 tig0016220:-111116 Msa1357990:CDS
ATCTGCTTTCTGATCCGGTT+TGG 0.369734 tig0016220:+112018 None:intergenic
ACTTTATCTGCTTTCTGATC+CGG 0.372861 tig0016220:+112013 None:intergenic
GATAATAGCTTCGCCATTGA+TGG 0.376166 tig0016220:+116347 None:intergenic
AAGACGGTATCCAGGATTTC+GGG 0.380000 tig0016220:+113381 None:intergenic
GCGTCGTGGTTCTGCTAATA+TGG 0.383420 tig0016220:-114195 Msa1357990:CDS
TTTGAGCTTGCTCTGCAGTT+TGG 0.384745 tig0016220:-113347 Msa1357990:CDS
AAGACCGGTACTCTTACTAT+TGG 0.390330 tig0016220:-112777 Msa1357990:CDS
GGCAACCGAAAGCCTGTAGA+AGG 0.392593 tig0016220:+111043 None:intergenic
CAAATAATGGTCGGTAATAA+GGG 0.394214 tig0016220:-112313 Msa1357990:CDS
GATGGCGAAGGGAATGTTGT+TGG 0.397682 tig0016220:-113939 Msa1357990:CDS
TGGCTATGAGTAATGATGTT+TGG 0.400777 tig0016220:+114761 None:intergenic
TCTATAAATGGGGAAGTAGC+TGG 0.405499 tig0016220:-112199 Msa1357990:CDS
AACAGATAAAATATGAGAAC+TGG 0.405763 tig0016220:+110709 None:intergenic
TCAGCTCTAAAAGCCCTTCC+TGG 0.406405 tig0016220:-114839 Msa1357990:CDS
CAACAAGTTCATAGAATTCC+CGG 0.406563 tig0016220:+112709 None:intergenic
CTAGCTGCACACAGTAGAAA+TGG 0.409795 tig0016220:+110835 None:intergenic
TCATGGTGACTGGAGACAAC+TGG 0.411106 tig0016220:-112096 Msa1357990:CDS
TGGCTTGCCTGGTTCTTAGC+TGG 0.413456 tig0016220:-113419 Msa1357990:CDS
GATGTGATTAAGATTATTCC+GGG 0.416786 tig0016220:-113879 Msa1357990:CDS
TTAGTTACGTTAACAAAAGA+AGG 0.419860 tig0016220:+116056 None:intergenic
AAAGCCCTTCCTGGAGTTGT+TGG 0.420383 tig0016220:-114830 Msa1357990:CDS
ACTTGTTGAGTCTGCTCAAA+TGG 0.423294 tig0016220:-113661 Msa1357990:CDS
GACGAGGCGGGGACCAGTAC+CGG 0.423853 tig0016220:-116245 Msa1357990:CDS
GGACGAAGCGGGGCCGGTAC+TGG 0.425038 tig0016220:+116232 None:intergenic
AAAAGAACTCCAGCTGCTAT+TGG 0.426533 tig0016220:+111067 None:intergenic
CGTTCGTAACAAGCAAATAA+TGG 0.436023 tig0016220:-112326 Msa1357990:CDS
CATTACTCATAGCCAAATCT+TGG 0.439206 tig0016220:-114753 Msa1357990:CDS
CTTGGCATTCCAATAGCAGC+TGG 0.440345 tig0016220:-111076 Msa1357990:CDS
TATTGGAGAGGTTATTCGTT+GGG 0.440502 tig0016220:-114282 Msa1357990:CDS
ATCATGCTTACCCGAAATCC+TGG 0.442883 tig0016220:-113391 Msa1357990:CDS
AATTCCATTGCAAGGGAAGT+TGG 0.443142 tig0016220:-112064 Msa1357990:CDS
ATGACTTGCTCCGCTTGCGC+TGG 0.446381 tig0016220:-116167 Msa1357990:CDS
TTCTGGGTACACGGTGGCTA+TGG 0.446961 tig0016220:-111305 Msa1357990:CDS
GGTGCAAAAGTTGCTTCTGA+TGG 0.448482 tig0016220:-113858 Msa1357990:CDS
GGTCGGTAATAAGGGCTTGA+TGG 0.449447 tig0016220:-112305 Msa1357990:CDS
GCTTTGGGTTATAATTTGCT+TGG 0.454401 tig0016220:-111094 Msa1357990:CDS
AGCTTTGGAAAGTGCACATA+AGG 0.456783 tig0016220:-113210 Msa1357990:intron
TTCTGTTGCTAAAGCTACTT+GGG 0.456910 tig0016220:+114805 None:intergenic
GCCGAAAACATGGCTCAAAC+AGG 0.459491 tig0016220:-112232 Msa1357990:CDS
CATGTTAAGGCAACGAAGGT+TGG 0.462412 tig0016220:-113714 Msa1357990:CDS
GATCAAAGGAGGGCAAGCTT+TGG 0.463274 tig0016220:-113225 Msa1357990:CDS
TTGGATCGCTGGAGCTGCTA+TGG 0.464018 tig0016220:-111017 Msa1357990:CDS
ATCGTGAAGATGCTTACTAT+TGG 0.467103 tig0016220:-114299 Msa1357990:CDS
AGCTGAACAGCCTTGACATA+GGG 0.471195 tig0016220:-110931 Msa1357990:CDS
GCAGATGTGGGAATGGCAAT+AGG 0.471457 tig0016220:-111244 Msa1357990:CDS
TCTCGGGCTTCTGGCCAAGA+AGG 0.471879 tig0016220:+112385 None:intergenic
GGAAGAAATTGATAGTAGGT+TGG 0.473391 tig0016220:-113913 Msa1357990:CDS
CATTTCTACTGTGTGCAGCT+AGG 0.475073 tig0016220:-110834 Msa1357990:three_prime_UTR
TTGGGGTAAGAAGGCATTGA+AGG 0.479436 tig0016220:+116269 None:intergenic
GGGAGGAAGAAATTGATAGT+AGG 0.480054 tig0016220:-113917 Msa1357990:CDS
AGGAAAGGTGATACTGTTAT+CGG 0.485797 tig0016220:-113765 Msa1357990:CDS
GGTGAAAGATGACGCGGGTA+CGG 0.486310 tig0016220:+116078 None:intergenic
TCTTGAGCACCTGGTTTCAG+TGG 0.486773 tig0016220:+112157 None:intergenic
CTATAAATGGGGAAGTAGCT+GGG 0.488705 tig0016220:-112198 Msa1357990:CDS
AGACCGGTACTCTTACTATT+GGG 0.489290 tig0016220:-112776 Msa1357990:CDS
ATCTTCGACGAGTTTGATCA+TGG 0.490734 tig0016220:+114631 None:intergenic
GTGTGTAATTCTAAAACTCC+AGG 0.492652 tig0016220:+114593 None:intergenic
TGTTATTGCTGAAGCCAAAC+CGG 0.492883 tig0016220:-112032 Msa1357990:CDS
GTGCAAAAGTTGCTTCTGAT+GGG 0.493563 tig0016220:-113857 Msa1357990:CDS
AACTAGTAATGGAAATTTGA+AGG 0.493572 tig0016220:-114489 Msa1357990:CDS
GTCCATGGAAGACGGTATCC+AGG 0.495093 tig0016220:+113373 None:intergenic
CAGTAATGGAAACAAAATCT+CGG 0.495105 tig0016220:+112368 None:intergenic
TTGGAAGCTGTAGATGAAGC+TGG 0.500496 tig0016220:-114734 Msa1357990:CDS
GAAACCTCCATGGACGAAGC+GGG 0.501595 tig0016220:+116221 None:intergenic
AAATCCATCAAACGGCTACA+TGG 0.503805 tig0016220:-116134 Msa1357990:CDS
GCAGTTTGGAATTTCTGTCA+TGG 0.508557 tig0016220:-113333 Msa1357990:CDS
GTTATGGTTGGCACTGGAGT+TGG 0.509447 tig0016220:-113266 Msa1357990:CDS
GTGAATGAGAGTATGATAAC+TGG 0.512746 tig0016220:-113810 Msa1357990:CDS
GAAATCACTTCTTGAGCACC+TGG 0.516021 tig0016220:+112148 None:intergenic
AAGCTGAACAGCCTTGACAT+AGG 0.516431 tig0016220:-110932 Msa1357990:CDS
TCTTACCCCAAAGACGAGGC+GGG 0.518671 tig0016220:-116257 Msa1357990:CDS
TTCGTTTCGAAAACAAGCTA+AGG 0.518784 tig0016220:+116325 None:intergenic
CGATCAGCAAACTTCTGGAC+AGG 0.520178 tig0016220:+113630 None:intergenic
TATGGATGTGCTGATAGCAC+TGG 0.521417 tig0016220:-114177 Msa1357990:CDS
TTTGTTTCCATTACTGGACA+TGG 0.523642 tig0016220:-112361 Msa1357990:CDS
GCCTCGTCTTTGGGGTAAGA+AGG 0.526182 tig0016220:+116260 None:intergenic
CTTTACTCCATGTCCAGTAA+TGG 0.526279 tig0016220:+112354 None:intergenic
CATGGTGACTGGAGACAACT+GGG 0.527270 tig0016220:-112095 Msa1357990:CDS
ATTAGGAGCATCATGGTGAC+TGG 0.527343 tig0016220:-112106 Msa1357990:CDS
GAATGGTGTCTTGCATGTTA+AGG 0.527353 tig0016220:-113727 Msa1357990:CDS
CGAAACCTCCATGGACGAAG+CGG 0.529228 tig0016220:+116220 None:intergenic
TGGTCCCCGCCTCGTCTTTG+GGG 0.531488 tig0016220:+116252 None:intergenic
AATTCCAACTTCCCTTGCAA+TGG 0.532336 tig0016220:+112060 None:intergenic
ATCACATTAATGAAATCCCT+TGG 0.532861 tig0016220:+114518 None:intergenic
CTATTGGAGAGGTTATTCGT+TGG 0.536377 tig0016220:-114283 Msa1357990:CDS
TAAACCCAAAGCACAAGGGC+AGG 0.536972 tig0016220:+113304 None:intergenic
TGTTGAGTTTGGATGGCGAA+GGG 0.537106 tig0016220:-113950 Msa1357990:CDS
GCTATATTGTTGAGTTTGGA+TGG 0.539889 tig0016220:-113957 Msa1357990:CDS
AGTAATGGAAACAAAATCTC+GGG 0.540576 tig0016220:+112369 None:intergenic
TGCACTTGTAGCAGCAGATG+TGG 0.540700 tig0016220:-111257 Msa1357990:CDS
GATTCTCTTCGATCACTCCC+TGG 0.541274 tig0016220:-114611 Msa1357990:CDS
TGGCACAGACATTGCTATTG+AGG 0.544713 tig0016220:-111218 Msa1357990:CDS
AGCAAGCTCAAAGCTGTCCA+TGG 0.545005 tig0016220:+113358 None:intergenic
TGTACTAATGAAGAGCAACT+TGG 0.545258 tig0016220:-111185 Msa1357990:CDS
ATAGCAGCTCCAGCGATCCA+AGG 0.546487 tig0016220:+111019 None:intergenic
CATTACTGGACATGGAGTAA+AGG 0.547296 tig0016220:-112353 Msa1357990:CDS
CACCCGAAAATGAACTGCAC+TGG 0.547314 tig0016220:+114248 None:intergenic
ACATCTGCTGCTACAAGTGC+AGG 0.550045 tig0016220:+111259 None:intergenic
CCGTCGAGAAATCCATCAAA+CGG 0.551690 tig0016220:-116142 Msa1357990:CDS
GGCTCCAACAACTCCAGGAA+GGG 0.555414 tig0016220:+114826 None:intergenic
CAATCGTCATGTATGATCAA+AGG 0.557472 tig0016220:+110881 None:intergenic
GCAAACAACACTGACAGAAG+AGG 0.559172 tig0016220:+110991 None:intergenic
TCTCTTCTTCCACCTTCACT+GGG 0.559842 tig0016220:+114455 None:intergenic
TCTGATGGGCTTGTTGTTTG+GGG 0.559897 tig0016220:-113843 Msa1357990:CDS
AAAATATTTCCCAGTGAAGG+TGG 0.561487 tig0016220:-114464 Msa1357990:CDS
AGTAGATCTTCAGCAACAGC+AGG 0.561622 tig0016220:+112262 None:intergenic
AGGCACGTCCTGTGTCTAAG+AGG 0.562376 tig0016220:-113785 Msa1357990:CDS
TCACCTTTCCTCTTAGACAC+AGG 0.563727 tig0016220:+113777 None:intergenic
CTTATAAAGCAGACATAACA+GGG 0.566000 tig0016220:-114541 Msa1357990:CDS
CATTATTTGCTTGTTACGAA+CGG 0.566291 tig0016220:+112327 None:intergenic
TCAACAACGGCCTTAGCTAG+TGG 0.566415 tig0016220:+112439 None:intergenic
ACTGCTGTTATGGTTGGCAC+TGG 0.566537 tig0016220:-113272 Msa1357990:CDS
ATGGTGTTTATGTATATACC+TGG 0.568017 tig0016220:-114347 Msa1357990:CDS
CTCGGGCTTCTGGCCAAGAA+GGG 0.570108 tig0016220:+112386 None:intergenic
ACTAATGAAGAGCAACTTGG+AGG 0.572225 tig0016220:-111182 Msa1357990:CDS
ACTGGAGTTGGTGCATCTCA+GGG 0.572906 tig0016220:-113254 Msa1357990:CDS
CAGGGTGTATTGATCAAAGG+AGG 0.574494 tig0016220:-113236 Msa1357990:CDS
CAGTGAACATCCACTAGCTA+AGG 0.574741 tig0016220:-112449 Msa1357990:CDS
ACACCTACTGCTGTTATGGT+TGG 0.577479 tig0016220:-113278 Msa1357990:CDS
TGTAGCAGCAGATGTGGGAA+TGG 0.580641 tig0016220:-111251 Msa1357990:CDS
AGTAGCTTTAGCAACAGAAG+AGG 0.581864 tig0016220:-114801 Msa1357990:CDS
GGGCTCCAACAACTCCAGGA+AGG 0.582459 tig0016220:+114825 None:intergenic
AAGCAGACATAACAGGGCCA+AGG 0.582491 tig0016220:-114535 Msa1357990:CDS
CTATGATAAGAAGTTAATGA+AGG 0.583011 tig0016220:-110757 Msa1357990:three_prime_UTR
CGAAGGGAATGTTGTTGGGG+AGG 0.585027 tig0016220:-113934 Msa1357990:CDS
TGGCGAAGGGAATGTTGTTG+GGG 0.586516 tig0016220:-113937 Msa1357990:CDS
ACTTGGGCTCCAACAACTCC+AGG 0.586558 tig0016220:+114821 None:intergenic
AACTGCTAATTCCATTGCAA+GGG 0.588246 tig0016220:-112071 Msa1357990:CDS
CCAAAGCCCAAACATAATTG+AGG 0.588978 tig0016220:+111110 None:intergenic
GTGGCTAAACCCAAAGCACA+AGG 0.589800 tig0016220:+113299 None:intergenic
TGGTGAGATCGCCTTCCACA+TGG 0.590453 tig0016220:+114660 None:intergenic
ACTTGCTGAAGCCGAAAACA+TGG 0.591432 tig0016220:-112242 Msa1357990:CDS
CCGTTTGATGGATTTCTCGA+CGG 0.591741 tig0016220:+116142 None:intergenic
GGTGGAACTTTGAATGAGAA+TGG 0.592551 tig0016220:-113744 Msa1357990:CDS
ATGGAGGTTTCGAAAGTCAC+CGG 0.592674 tig0016220:-116209 Msa1357990:CDS
GTGATTGTAGAAACTAGTAA+TGG 0.593567 tig0016220:-114500 Msa1357990:CDS
TTGTTGAGTTTGGATGGCGA+AGG 0.594736 tig0016220:-113951 Msa1357990:CDS
GGGTACACGGTGGCTATGGT+CGG 0.595035 tig0016220:-111301 Msa1357990:CDS
AACCATAACAGCAGTAGGTG+TGG 0.596571 tig0016220:+113280 None:intergenic
TATGAAAATTAGGAGCATCA+TGG 0.598156 tig0016220:-112113 Msa1357990:CDS
GTGGGAATGGCAATAGGTGC+TGG 0.599052 tig0016220:-111238 Msa1357990:CDS
AGCAGACATAACAGGGCCAA+GGG 0.601857 tig0016220:-114534 Msa1357990:CDS
ATATCTGATCCACTGAAACC+AGG 0.604258 tig0016220:-112166 Msa1357990:CDS
GGTGACTTTCGAAACCTCCA+TGG 0.605534 tig0016220:+116211 None:intergenic
CGTCCTGTGTCTAAGAGGAA+AGG 0.608923 tig0016220:-113780 Msa1357990:CDS
TAGTTACGTTAACAAAAGAA+GGG 0.608960 tig0016220:+116057 None:intergenic
TCTCAGGGTGTATTGATCAA+AGG 0.609729 tig0016220:-113239 Msa1357990:CDS
TTCTTACCCCAAAGACGAGG+CGG 0.609821 tig0016220:-116258 Msa1357990:CDS
GCGAAAATATTTCCCAGTGA+AGG 0.609868 tig0016220:-114467 Msa1357990:CDS
AAAATCGATCTCCATGTGGA+AGG 0.611046 tig0016220:-114671 Msa1357990:CDS
GAACTGCTAATTCCATTGCA+AGG 0.612986 tig0016220:-112072 Msa1357990:CDS
TCAAAGCTGTCCATGGAAGA+CGG 0.613051 tig0016220:+113365 None:intergenic
AAACCTCCATGGACGAAGCG+GGG 0.613852 tig0016220:+116222 None:intergenic
GAAGATGCTTACTATTGGAG+AGG 0.619198 tig0016220:-114294 Msa1357990:CDS
ATAGGAGGAGGCTATTTGTG+AGG 0.619468 tig0016220:-114984 Msa1357990:intron
GTGCCAACCATAACAGCAGT+AGG 0.620470 tig0016220:+113275 None:intergenic
CGTAACAAGCAAATAATGGT+CGG 0.624159 tig0016220:-112322 Msa1357990:CDS
TATTTGCTTGTTACGAACGG+TGG 0.624706 tig0016220:+112330 None:intergenic
CTTCCCAATAGTAAGAGTAC+CGG 0.625745 tig0016220:+112773 None:intergenic
TGTGAGGCAATTGAAGACGC+TGG 0.626299 tig0016220:-114968 Msa1357990:CDS
TAGAGCTGATTCAACCGCGG+TGG 0.632104 tig0016220:+114853 None:intergenic
TATAAATGGGGAAGTAGCTG+GGG 0.633789 tig0016220:-112197 Msa1357990:CDS
GATGTAAGCAGAAAACAACT+TGG 0.633965 tig0016220:-110735 Msa1357990:three_prime_UTR
TGAACTTGTTGCTGCAGCTG+AGG 0.636560 tig0016220:-112697 Msa1357990:intron
GCACTTGTAGCAGCAGATGT+GGG 0.637701 tig0016220:-111256 Msa1357990:CDS
CTTACCCCAAAGACGAGGCG+GGG 0.641802 tig0016220:-116256 Msa1357990:CDS
CTTGCATGTTAAGGCAACGA+AGG 0.645262 tig0016220:-113718 Msa1357990:CDS
GCAGCTCCAGCGATCCAAGG+CGG 0.645327 tig0016220:+111022 None:intergenic
GCTGAACAGCCTTGACATAG+GGG 0.650613 tig0016220:-110930 Msa1357990:CDS
TCCATGAACAGAGAAAAGTC+CGG 0.650615 tig0016220:+116190 None:intergenic
TGTGTAATTCTAAAACTCCA+GGG 0.652850 tig0016220:+114594 None:intergenic
AAAGGTGATACTGTTATCGG+TGG 0.655577 tig0016220:-113762 Msa1357990:CDS
GCCTTCTTACCCCAAAGACG+AGG 0.657096 tig0016220:-116261 Msa1357990:CDS
CTGAACAGCCTTGACATAGG+GGG 0.658953 tig0016220:-110929 Msa1357990:CDS
GCAACCGAAAGCCTGTAGAA+GGG 0.668289 tig0016220:+111044 None:intergenic
AAGAAGGGTGAAAGATGACG+CGG 0.673224 tig0016220:+116072 None:intergenic
TCTGTTAGGAAAGTATCTTG+AGG 0.673983 tig0016220:-114042 Msa1357990:CDS
AGGGTGTATTGATCAAAGGA+GGG 0.674325 tig0016220:-113235 Msa1357990:CDS
GCTTATAAATCATTGCGTCG+TGG 0.674394 tig0016220:-114209 Msa1357990:CDS
ACGGTGGCTATGGTCGGCGA+CGG 0.683789 tig0016220:-111295 Msa1357990:CDS
TGAAGACGCTGGATTTGACG+CGG 0.689222 tig0016220:-114957 Msa1357990:CDS
ATGGATGTGCTGATAGCACT+GGG 0.694300 tig0016220:-114176 Msa1357990:CDS
AGGTATATACATAAACACCA+TGG 0.708250 tig0016220:+114349 None:intergenic
TGGCTAAACCCAAAGCACAA+GGG 0.722049 tig0016220:+113300 None:intergenic
TGAGAGTATGATAACTGGTG+AGG 0.727598 tig0016220:-113805 Msa1357990:CDS
AGAAGGGTGAAAGATGACGC+GGG 0.728287 tig0016220:+116073 None:intergenic
AAGCAAAATCGATCTCCATG+TGG 0.735028 tig0016220:-114675 Msa1357990:CDS
ATGCACGTCGTGTTCCACCG+CGG 0.778510 tig0016220:-114867 Msa1357990:CDS
ATGGTGACTGGAGACAACTG+GGG 0.796917 tig0016220:-112094 Msa1357990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGAATATAATGTTAAAAA+TGG - tig0016220:114136-114155 Msa1357990:CDS 10.0%
!! TAATAGACTAAATTATACTA+GGG + tig0016220:111606-111625 None:intergenic 15.0%
!!! TTTAATTTTATTTTCATAGG+AGG - tig0016220:112080-112099 Msa1357990:CDS 15.0%
!! CATATCATATCATTATAATA+TGG + tig0016220:113514-113533 None:intergenic 15.0%
!!! GAATTTTAGTATCTATAAAT+GGG - tig0016220:114869-114888 Msa1357990:CDS 15.0%
!!! AATTTTAGTATCTATAAATG+GGG - tig0016220:114870-114889 Msa1357990:CDS 15.0%
!! TCAATTATCTATAATTCTAT+AGG - tig0016220:115300-115319 Msa1357990:intron 15.0%
!!! TGTTATTATTTTCTATTTCA+AGG + tig0016220:115381-115400 None:intergenic 15.0%
!!! GTTTTTGATATAAACTATAA+AGG + tig0016220:115489-115508 None:intergenic 15.0%
!!! GTGATATTTTATTTTAAGTT+AGG - tig0016220:116287-116306 Msa1357990:CDS 15.0%
!!! AAGGAATATTTTGTGTATAA+TGG - tig0016220:111321-111340 Msa1357990:intron 20.0%
!!! ATATGTCCTTTAAGTTATTT+TGG + tig0016220:111556-111575 None:intergenic 20.0%
!! AATAGACTAAATTATACTAG+GGG + tig0016220:111605-111624 None:intergenic 20.0%
!! CTAATAGACTAAATTATACT+AGG + tig0016220:111607-111626 None:intergenic 20.0%
!! GTTCAAAATGCAAAATATAA+GGG - tig0016220:111784-111803 Msa1357990:intron 20.0%
!! CAACTCATATATAAATACTA+CGG + tig0016220:111879-111898 None:intergenic 20.0%
!!! TCATTCCTTTTATTTGTATA+CGG + tig0016220:112191-112210 None:intergenic 20.0%
!!! GCTATTACAAATCTTTTTTA+TGG - tig0016220:112673-112692 Msa1357990:intron 20.0%
!! ACCTGGAATAAAAAATTTAT+TGG - tig0016220:112749-112768 Msa1357990:CDS 20.0%
!!! TCCAATAAATTTTTTATTCC+AGG + tig0016220:112753-112772 None:intergenic 20.0%
!! TGGTATAATATAATTACCAA+AGG + tig0016220:113494-113513 None:intergenic 20.0%
!! TCAAGAAAATTGAATAGAAA+AGG + tig0016220:113547-113566 None:intergenic 20.0%
!! AATCTATTATTAACAAACAC+CGG + tig0016220:114067-114086 None:intergenic 20.0%
!!! ACTATCTATAAAAGTATTCA+TGG - tig0016220:114197-114216 Msa1357990:CDS 20.0%
!! TACAAAACTATTGACAAAAA+TGG - tig0016220:114343-114362 Msa1357990:CDS 20.0%
!!! CTCTTCATCTTTAAATTTTT+TGG + tig0016220:114671-114690 None:intergenic 20.0%
!!! GGAATTTTAGTATCTATAAA+TGG - tig0016220:114868-114887 Msa1357990:CDS 20.0%
!!! AATTTTCATAGACTTTAGAA+TGG + tig0016220:114956-114975 None:intergenic 20.0%
!!! TTCTAAAGTCTATGAAAATT+AGG - tig0016220:114956-114975 Msa1357990:CDS 20.0%
! GCAAAAAAATAAACCATCAA+TGG - tig0016220:110719-110738 Msa1357990:three_prime_UTR 25.0%
! TAGTTACGTTAACAAAAGAA+GGG + tig0016220:111025-111044 None:intergenic 25.0%
! TTAGTTACGTTAACAAAAGA+AGG + tig0016220:111026-111045 None:intergenic 25.0%
! TGCACAAAATGAATAAAAGA+GGG + tig0016220:111059-111078 None:intergenic 25.0%
! GTAGTTAAGTTTGTAAATGA+TGG - tig0016220:111262-111281 Msa1357990:CDS 25.0%
!!! ATGTTCTAAGATATCTGATA+AGG - tig0016220:111422-111441 Msa1357990:intron 25.0%
! GGTTCAAAATGCAAAATATA+AGG - tig0016220:111783-111802 Msa1357990:intron 25.0%
!!! TGCATTTCTTTTTAAGTTCT+AGG - tig0016220:111813-111832 Msa1357990:intron 25.0%
! CATATTACAAGAATCAAAAG+CGG + tig0016220:111854-111873 None:intergenic 25.0%
!!! AATTTTATTTTCATAGGAGG+AGG - tig0016220:112083-112102 Msa1357990:CDS 25.0%
!! AATTTTGTTGAATTCGAGAT+TGG + tig0016220:112511-112530 None:intergenic 25.0%
!! AACTAGTAATGGAAATTTGA+AGG - tig0016220:112590-112609 Msa1357990:intron 25.0%
! AAGAGATACTCATAGAAAAA+AGG - tig0016220:112641-112660 Msa1357990:intron 25.0%
!!! CAAATCTTTTTTATGGAGTT+TGG - tig0016220:112680-112699 Msa1357990:intron 25.0%
!! ATTCTGTTTATTCTGTTTTG+AGG - tig0016220:112946-112965 Msa1357990:intron 25.0%
!!! TTCTGTTTATTCTGTTTTGA+GGG - tig0016220:112947-112966 Msa1357990:intron 25.0%
! CTTATTTCGTTTATTCTGTT+AGG - tig0016220:113023-113042 Msa1357990:intron 25.0%
! TGATGTGATTAAGATTATTC+CGG - tig0016220:113199-113218 Msa1357990:intron 25.0%
!!! TATATGACAAATGGACTAAT+TGG + tig0016220:113986-114005 None:intergenic 25.0%
! TCCATTTGTCATATATGTTT+AGG - tig0016220:113991-114010 Msa1357990:CDS 25.0%
! TCCTAAACATATATGACAAA+TGG + tig0016220:113995-114014 None:intergenic 25.0%
! TTCTTCATATCAAATGAACA+TGG + tig0016220:114044-114063 None:intergenic 25.0%
!!! TCATGGTTTTACTTTTTATG+TGG - tig0016220:114214-114233 Msa1357990:CDS 25.0%
!!! AGTTTTGTATTTACTATCAC+TGG + tig0016220:114332-114351 None:intergenic 25.0%
!! ATTTTCTATAACTGTTACTG+AGG + tig0016220:114445-114464 None:intergenic 25.0%
! TCAAGTTATTGTCATAAACA+TGG - tig0016220:114533-114552 Msa1357990:CDS 25.0%
! TACTAATGATCACATCATTT+AGG - tig0016220:115323-115342 Msa1357990:intron 25.0%
! AAGGATTAAAATCTATGTCA+TGG + tig0016220:115362-115381 None:intergenic 25.0%
! AAAAGAGAAAAATAACTGTG+CGG + tig0016220:115424-115443 None:intergenic 25.0%
! TGATATAAACTATAAAGGCT+AGG + tig0016220:115484-115503 None:intergenic 25.0%
!! TTATTAATGTGTTGATGTGT+CGG - tig0016220:115654-115673 Msa1357990:intron 25.0%
!! CATACATTTTCTTCTTTTTC+AGG - tig0016220:115750-115769 Msa1357990:intron 25.0%
!! AGTTTTTCTTGAAAGATCAA+TGG + tig0016220:115935-115954 None:intergenic 25.0%
! CTATGATAAGAAGTTAATGA+AGG - tig0016220:116322-116341 Msa1357990:CDS 25.0%
GCACAAAATGAATAAAAGAG+GGG + tig0016220:111058-111077 None:intergenic 30.0%
CTGCACAAAATGAATAAAAG+AGG + tig0016220:111060-111079 None:intergenic 30.0%
!! ATCATCGTTTTTGTTACGTT+TGG + tig0016220:111219-111238 None:intergenic 30.0%
!! GTTTGTAAATGATGGACATT+AGG - tig0016220:111270-111289 Msa1357990:CDS 30.0%
AGGATGTAAATTCTCATCAA+AGG - tig0016220:111290-111309 Msa1357990:CDS 30.0%
AGATATCTGATAAGGATACA+TGG - tig0016220:111430-111449 Msa1357990:intron 30.0%
ACGTTACAAAAACAATGATG+TGG + tig0016220:111475-111494 None:intergenic 30.0%
GTGTGACCAAAATAACTTAA+AGG - tig0016220:111547-111566 Msa1357990:intron 30.0%
!! CGCTTTTGATTCTTGTAATA+TGG - tig0016220:111852-111871 Msa1357990:intron 30.0%
ATTACAAACTGCTCTATAGT+TGG - tig0016220:111937-111956 Msa1357990:intron 30.0%
GTATGCCGTATACAAATAAA+AGG - tig0016220:112183-112202 Msa1357990:CDS 30.0%
!! TGTGTAATTCTAAAACTCCA+GGG + tig0016220:112488-112507 None:intergenic 30.0%
TCTTATAAAGCAGACATAAC+AGG - tig0016220:112537-112556 Msa1357990:intron 30.0%
CTTATAAAGCAGACATAACA+GGG - tig0016220:112538-112557 Msa1357990:intron 30.0%
ATCACATTAATGAAATCCCT+TGG + tig0016220:112564-112583 None:intergenic 30.0%
GTGATTGTAGAAACTAGTAA+TGG - tig0016220:112579-112598 Msa1357990:intron 30.0%
AGGTATATACATAAACACCA+TGG + tig0016220:112733-112752 None:intergenic 30.0%
ATGGTGTTTATGTATATACC+TGG - tig0016220:112732-112751 Msa1357990:CDS 30.0%
!!! TATCTTGAGGTTTTAGCTAA+GGG - tig0016220:113050-113069 Msa1357990:intron 30.0%
TACTGCTATATTGTTGAGTT+TGG - tig0016220:113118-113137 Msa1357990:intron 30.0%
GATGTGATTAAGATTATTCC+GGG - tig0016220:113200-113219 Msa1357990:intron 30.0%
AATGTCATTGACATGTAAGT+AGG + tig0016220:113596-113615 None:intergenic 30.0%
TTAATCTTCTATCGCTTTGT+AGG - tig0016220:113614-113633 Msa1357990:CDS 30.0%
! TCTTGATCTCATTTTCAACT+TGG - tig0016220:113640-113659 Msa1357990:CDS 30.0%
AAGGAGCTAATCTAATTCTA+AGG + tig0016220:113906-113925 None:intergenic 30.0%
GGCTAAAAATTGAACAATGA+TGG - tig0016220:113955-113974 Msa1357990:CDS 30.0%
GTTCATTTGATATGAAGAAC+CGG - tig0016220:114045-114064 Msa1357990:CDS 30.0%
CAGTCACAAACATATTCAAA+TGG + tig0016220:114250-114269 None:intergenic 30.0%
TATTGACAAAAATGGTACTC+CGG - tig0016220:114351-114370 Msa1357990:CDS 30.0%
! TTGTCATAAACATGGACTAT+AGG - tig0016220:114541-114560 Msa1357990:CDS 30.0%
!!! TTTTTTGGCATACTCAACAA+CGG + tig0016220:114656-114675 None:intergenic 30.0%
! AGTAATGGAAACAAAATCTC+GGG + tig0016220:114713-114732 None:intergenic 30.0%
! CAGTAATGGAAACAAAATCT+CGG + tig0016220:114714-114733 None:intergenic 30.0%
! CATTATTTGCTTGTTACGAA+CGG + tig0016220:114755-114774 None:intergenic 30.0%
CAAATAATGGTCGGTAATAA+GGG - tig0016220:114766-114785 Msa1357990:CDS 30.0%
!! TATGAAAATTAGGAGCATCA+TGG - tig0016220:114966-114985 Msa1357990:CDS 30.0%
AGATAAAGTGAAAAACTTGC+AGG - tig0016220:115080-115099 Msa1357990:intron 30.0%
AAGATGTCATACTTGATTTC+AGG + tig0016220:115212-115231 None:intergenic 30.0%
TTCATTAATTGTATTCCGCT+AGG + tig0016220:115259-115278 None:intergenic 30.0%
ACGCTTTCAATATGAATTGT+CGG + tig0016220:115604-115623 None:intergenic 30.0%
! ATTCATATTGAAAGCGTGTT+AGG - tig0016220:115607-115626 Msa1357990:intron 30.0%
TATACGCCTCAATTATGTTT+GGG - tig0016220:115963-115982 Msa1357990:intron 30.0%
TTCGTTTCGAAAACAAGCTA+AGG + tig0016220:110757-110776 None:intergenic 35.0%
!!! TTAGCTTGTTTTCGAAACGA+AGG - tig0016220:110756-110775 Msa1357990:three_prime_UTR 35.0%
TGACAATTAAGTCTGTGATG+TGG - tig0016220:111240-111259 Msa1357990:CDS 35.0%
! TGTATAATGGCTTCGATTTG+AGG - tig0016220:111334-111353 Msa1357990:intron 35.0%
TCATGAAGAATGACAATGAG+AGG - tig0016220:111358-111377 Msa1357990:intron 35.0%
CATGAAGAATGACAATGAGA+GGG - tig0016220:111359-111378 Msa1357990:intron 35.0%
CAAAGCCAGAAATCTAATCT+TGG - tig0016220:111705-111724 Msa1357990:intron 35.0%
GAACACCAAGATTAGATTTC+TGG + tig0016220:111713-111732 None:intergenic 35.0%
AGCGGTGCAAAAACAAATTA+GGG - tig0016220:111761-111780 Msa1357990:intron 35.0%
TTCTGTTGCTAAAGCTACTT+GGG + tig0016220:112277-112296 None:intergenic 35.0%
TGGCTATGAGTAATGATGTT+TGG + tig0016220:112321-112340 None:intergenic 35.0%
CATTACTCATAGCCAAATCT+TGG - tig0016220:112326-112345 Msa1357990:CDS 35.0%
GAGTTTGATCATGGCATTAT+TGG + tig0016220:112442-112461 None:intergenic 35.0%
!! GTGTGTAATTCTAAAACTCC+AGG + tig0016220:112489-112508 None:intergenic 35.0%
AAAATATTTCCCAGTGAAGG+TGG - tig0016220:112615-112634 Msa1357990:intron 35.0%
! TCCAGTTTTTCTAACTTCCA+TGG - tig0016220:112713-112732 Msa1357990:CDS 35.0%
ACCATGGAAGTTAGAAAAAC+TGG + tig0016220:112717-112736 None:intergenic 35.0%
ATCGTGAAGATGCTTACTAT+TGG - tig0016220:112780-112799 Msa1357990:CDS 35.0%
TATTGGAGAGGTTATTCGTT+GGG - tig0016220:112797-112816 Msa1357990:CDS 35.0%
!!! GCTACTTCTAAGGTTTTTGA+AGG - tig0016220:112972-112991 Msa1357990:intron 35.0%
!! TCTGTTAGGAAAGTATCTTG+AGG - tig0016220:113037-113056 Msa1357990:intron 35.0%
!!! GTATCTTGAGGTTTTAGCTA+AGG - tig0016220:113049-113068 Msa1357990:intron 35.0%
!!! ATCTTGAGGTTTTAGCTAAG+GGG - tig0016220:113051-113070 Msa1357990:intron 35.0%
CTCAACAATATAGCAGTATC+AGG + tig0016220:113116-113135 None:intergenic 35.0%
GCTATATTGTTGAGTTTGGA+TGG - tig0016220:113122-113141 Msa1357990:intron 35.0%
! GGAAGAAATTGATAGTAGGT+TGG - tig0016220:113166-113185 Msa1357990:intron 35.0%
! GTGAATGAGAGTATGATAAC+TGG - tig0016220:113269-113288 Msa1357990:CDS 35.0%
AGGAAAGGTGATACTGTTAT+CGG - tig0016220:113314-113333 Msa1357990:CDS 35.0%
TTCCAAATACTTTGTGCCTT+TGG - tig0016220:113475-113494 Msa1357990:intron 35.0%
! TACCAAAGGCACAAAGTATT+TGG + tig0016220:113480-113499 None:intergenic 35.0%
! ATATTTTCCAGCTAAGAACC+AGG + tig0016220:113670-113689 None:intergenic 35.0%
! TAGATTAGCTCCTTGAATCA+TGG - tig0016220:113912-113931 Msa1357990:CDS 35.0%
CACAGAAAATCCATGATTCA+AGG + tig0016220:113925-113944 None:intergenic 35.0%
! CATGGATTTTCTGTGAATGT+TGG - tig0016220:113930-113949 Msa1357990:CDS 35.0%
! GATTTTCTGTGAATGTTGGT+TGG - tig0016220:113934-113953 Msa1357990:CDS 35.0%
!! AAAATGGAGAAAGTGTTCCT+TGG - tig0016220:114152-114171 Msa1357990:CDS 35.0%
!!! TGCATTGTTTTTGACAAGAC+CGG - tig0016220:114287-114306 Msa1357990:CDS 35.0%
ATTGACAAAAATGGTACTCC+GGG - tig0016220:114352-114371 Msa1357990:CDS 35.0%
CAACAAGTTCATAGAATTCC+CGG + tig0016220:114373-114392 None:intergenic 35.0%
!! CGAGATTTTGTTTCCATTAC+TGG - tig0016220:114712-114731 Msa1357990:CDS 35.0%
TTTGTTTCCATTACTGGACA+TGG - tig0016220:114718-114737 Msa1357990:CDS 35.0%
CGTTCGTAACAAGCAAATAA+TGG - tig0016220:114753-114772 Msa1357990:CDS 35.0%
CGTAACAAGCAAATAATGGT+CGG - tig0016220:114757-114776 Msa1357990:CDS 35.0%
GCAAATAATGGTCGGTAATA+AGG - tig0016220:114765-114784 Msa1357990:CDS 35.0%
AACTGCTAATTCCATTGCAA+GGG - tig0016220:115008-115027 Msa1357990:intron 35.0%
ACTTTATCTGCTTTCTGATC+CGG + tig0016220:115069-115088 None:intergenic 35.0%
TAATTGTATTCCGCTAGGAT+AGG + tig0016220:115254-115273 None:intergenic 35.0%
!! AGAAGGATAATGGGATTTCT+TGG + tig0016220:115458-115477 None:intergenic 35.0%
!!! TTTCTTCTTTTTCAGGCTTC+TGG - tig0016220:115757-115776 Msa1357990:intron 35.0%
!!! TTCTTCTTTTTCAGGCTTCT+GGG - tig0016220:115758-115777 Msa1357990:intron 35.0%
TGTACTAATGAAGAGCAACT+TGG - tig0016220:115894-115913 Msa1357990:intron 35.0%
GTATACGCCTCAATTATGTT+TGG - tig0016220:115962-115981 Msa1357990:intron 35.0%
CTCAATTATGTTTGGGCTTT+GGG - tig0016220:115970-115989 Msa1357990:intron 35.0%
!! GCTTTGGGTTATAATTTGCT+TGG - tig0016220:115985-116004 Msa1357990:intron 35.0%
CAATCGTCATGTATGATCAA+AGG + tig0016220:116201-116220 None:intergenic 35.0%
GATGTAAGCAGAAAACAACT+TGG - tig0016220:116344-116363 Msa1357990:CDS 35.0%
GATAATAGCTTCGCCATTGA+TGG + tig0016220:110735-110754 None:intergenic 40.0%
!! CTTGTTTTCGAAACGAAGGA+TGG - tig0016220:110760-110779 Msa1357990:three_prime_UTR 40.0%
TCCATGAACAGAGAAAAGTC+CGG + tig0016220:110892-110911 None:intergenic 40.0%
AAATCCATCAAACGGCTACA+TGG - tig0016220:110945-110964 Msa1357990:CDS 40.0%
AATTCCATGTAGCCGTTTGA+TGG + tig0016220:110952-110971 None:intergenic 40.0%
CTCATCAAAGGAAGAGTTCA+AGG - tig0016220:111302-111321 Msa1357990:CDS 40.0%
! CTAGGGGTTCTTTAAGTTTG+AGG + tig0016220:111589-111608 None:intergenic 40.0%
GTGTTGAGTATTCGTGTTAG+TGG - tig0016220:111682-111701 Msa1357990:intron 40.0%
!!! CTAATTTGTTTTTGCACCGC+TGG + tig0016220:111762-111781 None:intergenic 40.0%
CAGCGGTGCAAAAACAAATT+AGG - tig0016220:111760-111779 Msa1357990:intron 40.0%
GCGGTGCAAAAACAAATTAG+GGG - tig0016220:111762-111781 Msa1357990:intron 40.0%
CAAGCAAAACGCAACAATGT+TGG + tig0016220:111994-112013 None:intergenic 40.0%
!!! TTTTAGAGCTGATTCAACCG+CGG + tig0016220:112232-112251 None:intergenic 40.0%
CTTCTGTTGCTAAAGCTACT+TGG + tig0016220:112278-112297 None:intergenic 40.0%
!! AGTAGCTTTAGCAACAGAAG+AGG - tig0016220:112278-112297 Msa1357990:CDS 40.0%
CATCTACAGCTTCCAAGATT+TGG + tig0016220:112341-112360 None:intergenic 40.0%
AAGCAAAATCGATCTCCATG+TGG - tig0016220:112404-112423 Msa1357990:CDS 40.0%
AAAATCGATCTCCATGTGGA+AGG - tig0016220:112408-112427 Msa1357990:CDS 40.0%
ATCTTCGACGAGTTTGATCA+TGG + tig0016220:112451-112470 None:intergenic 40.0%
GCGAAAATATTTCCCAGTGA+AGG - tig0016220:112612-112631 Msa1357990:intron 40.0%
GAAGATGCTTACTATTGGAG+AGG - tig0016220:112785-112804 Msa1357990:CDS 40.0%
CTATTGGAGAGGTTATTCGT+TGG - tig0016220:112796-112815 Msa1357990:CDS 40.0%
! ACACCAGTGCAGTTCATTTT+CGG - tig0016220:112828-112847 Msa1357990:intron 40.0%
! TTCGGGTGGCGATTTTATAT+TGG - tig0016220:112846-112865 Msa1357990:intron 40.0%
GCTTATAAATCATTGCGTCG+TGG - tig0016220:112870-112889 Msa1357990:intron 40.0%
! GGGAGGAAGAAATTGATAGT+AGG - tig0016220:113162-113181 Msa1357990:intron 40.0%
GTGCAAAAGTTGCTTCTGAT+GGG - tig0016220:113222-113241 Msa1357990:CDS 40.0%
!! TTCTGATGGGCTTGTTGTTT+GGG - tig0016220:113235-113254 Msa1357990:CDS 40.0%
! TGAGAGTATGATAACTGGTG+AGG - tig0016220:113274-113293 Msa1357990:CDS 40.0%
AAAGGTGATACTGTTATCGG+TGG - tig0016220:113317-113336 Msa1357990:CDS 40.0%
GGTGGAACTTTGAATGAGAA+TGG - tig0016220:113335-113354 Msa1357990:CDS 40.0%
GAATGGTGTCTTGCATGTTA+AGG - tig0016220:113352-113371 Msa1357990:CDS 40.0%
! ACTTGTTGAGTCTGCTCAAA+TGG - tig0016220:113418-113437 Msa1357990:CDS 40.0%
AAATGCGATCAGCAAACTTC+TGG + tig0016220:113457-113476 None:intergenic 40.0%
! GCAGTTTGGAATTTCTGTCA+TGG - tig0016220:113746-113765 Msa1357990:CDS 40.0%
! TCTCAGGGTGTATTGATCAA+AGG - tig0016220:113840-113859 Msa1357990:CDS 40.0%
! AGGGTGTATTGATCAAAGGA+GGG - tig0016220:113844-113863 Msa1357990:CDS 40.0%
!! AGCTTTGGAAAGTGCACATA+AGG - tig0016220:113869-113888 Msa1357990:CDS 40.0%
!! GACAAATGGACTAATTGGCA+TGG + tig0016220:113981-114000 None:intergenic 40.0%
TATGCTGCAACAAGTATCCA+AGG + tig0016220:114172-114191 None:intergenic 40.0%
! GTTTGTGACTGTCTTGTTGT+AGG - tig0016220:114259-114278 Msa1357990:CDS 40.0%
AAGACCGGTACTCTTACTAT+TGG - tig0016220:114302-114321 Msa1357990:CDS 40.0%
AGACCGGTACTCTTACTATT+GGG - tig0016220:114303-114322 Msa1357990:CDS 40.0%
! CTTCCCAATAGTAAGAGTAC+CGG + tig0016220:114309-114328 None:intergenic 40.0%
!! TCAGCCTTTTAGAAGGAGAT+GGG + tig0016220:114421-114440 None:intergenic 40.0%
! AACTGTTGTTTGTCCATCTC+AGG - tig0016220:114603-114622 Msa1357990:CDS 40.0%
AAGATGAAGAGAACCCTTCT+TGG - tig0016220:114680-114699 Msa1357990:CDS 40.0%
CTTTACTCCATGTCCAGTAA+TGG + tig0016220:114728-114747 None:intergenic 40.0%
CATTACTGGACATGGAGTAA+AGG - tig0016220:114726-114745 Msa1357990:CDS 40.0%
! TATTTGCTTGTTACGAACGG+TGG + tig0016220:114752-114771 None:intergenic 40.0%
! TCCTGTTTGAGCCATGTTTT+CGG + tig0016220:114851-114870 None:intergenic 40.0%
TCTATAAATGGGGAAGTAGC+TGG - tig0016220:114880-114899 Msa1357990:CDS 40.0%
CTATAAATGGGGAAGTAGCT+GGG - tig0016220:114881-114900 Msa1357990:CDS 40.0%
TATAAATGGGGAAGTAGCTG+GGG - tig0016220:114882-114901 Msa1357990:CDS 40.0%
ATATCTGATCCACTGAAACC+AGG - tig0016220:114913-114932 Msa1357990:CDS 40.0%
GAACTGCTAATTCCATTGCA+AGG - tig0016220:115007-115026 Msa1357990:intron 40.0%
AATTCCATTGCAAGGGAAGT+TGG - tig0016220:115015-115034 Msa1357990:intron 40.0%
AATTCCAACTTCCCTTGCAA+TGG + tig0016220:115022-115041 None:intergenic 40.0%
TGTTATTGCTGAAGCCAAAC+CGG - tig0016220:115047-115066 Msa1357990:intron 40.0%
TTCAGGAGATGATAGTTGTC+AGG + tig0016220:115195-115214 None:intergenic 40.0%
CAGTAACAATCCTATCCTAG+CGG - tig0016220:115241-115260 Msa1357990:intron 40.0%
GCTAGGAACAGAAGGATAAT+GGG + tig0016220:115467-115486 None:intergenic 40.0%
CTATAAAGGCTAGGAACAGA+AGG + tig0016220:115475-115494 None:intergenic 40.0%
ACAAACACCAGAGATGATAG+TGG + tig0016220:115682-115701 None:intergenic 40.0%
ACTAATGAAGAGCAACTTGG+AGG - tig0016220:115897-115916 Msa1357990:intron 40.0%
CCAAAGCCCAAACATAATTG+AGG + tig0016220:115972-115991 None:intergenic 40.0%
CCTCAATTATGTTTGGGCTT+TGG - tig0016220:115969-115988 Msa1357990:intron 40.0%
AAAAGAACTCCAGCTGCTAT+TGG + tig0016220:116015-116034 None:intergenic 40.0%
! TTTTCCCTTCTACAGGCTTT+CGG - tig0016220:116031-116050 Msa1357990:intron 40.0%
!! TTGGGGTAAGAAGGCATTGA+AGG + tig0016220:110813-110832 None:intergenic 45.0%
ATGGAGGTTTCGAAAGTCAC+CGG - tig0016220:110870-110889 Msa1357990:exon 45.0%
! ACCGGACTTTTCTCTGTTCA+TGG - tig0016220:110888-110907 Msa1357990:CDS 45.0%
!! CCGTTTGATGGATTTCTCGA+CGG + tig0016220:110940-110959 None:intergenic 45.0%
CCGTCGAGAAATCCATCAAA+CGG - tig0016220:110937-110956 Msa1357990:CDS 45.0%
AAGAAGGGTGAAAGATGACG+CGG + tig0016220:111010-111029 None:intergenic 45.0%
! GTTCTTGACCTTTTGTCCAG+CGG - tig0016220:111743-111762 Msa1357990:intron 45.0%
! TTTTTGCACCGCTGGACAAA+AGG + tig0016220:111754-111773 None:intergenic 45.0%
CAAGAATCAAAAGCGGAGCT+AGG + tig0016220:111847-111866 None:intergenic 45.0%
TGCTCTATAGTTGGAGACGT+TGG - tig0016220:111946-111965 Msa1357990:intron 45.0%
ATAGGAGGAGGCTATTTGTG+AGG - tig0016220:112095-112114 Msa1357990:CDS 45.0%
TTGGAAGCTGTAGATGAAGC+TGG - tig0016220:112345-112364 Msa1357990:CDS 45.0%
TCTCTTCTTCCACCTTCACT+GGG + tig0016220:112627-112646 None:intergenic 45.0%
ATCTCTTCTTCCACCTTCAC+TGG + tig0016220:112628-112647 None:intergenic 45.0%
! CACCAGTGCAGTTCATTTTC+GGG - tig0016220:112829-112848 Msa1357990:intron 45.0%
! TATGGATGTGCTGATAGCAC+TGG - tig0016220:112902-112921 Msa1357990:intron 45.0%
! ATGGATGTGCTGATAGCACT+GGG - tig0016220:112903-112922 Msa1357990:intron 45.0%
! TTTGAGGGCTGCTACTTCTA+AGG - tig0016220:112962-112981 Msa1357990:intron 45.0%
TTGTTGAGTTTGGATGGCGA+AGG - tig0016220:113128-113147 Msa1357990:intron 45.0%
TGTTGAGTTTGGATGGCGAA+GGG - tig0016220:113129-113148 Msa1357990:intron 45.0%
ATGGCGAAGGGAATGTTGTT+GGG - tig0016220:113141-113160 Msa1357990:intron 45.0%
! TCAGAAGCAACTTTTGCACC+CGG + tig0016220:113221-113240 None:intergenic 45.0%
GGTGCAAAAGTTGCTTCTGA+TGG - tig0016220:113221-113240 Msa1357990:CDS 45.0%
!! CTTCTGATGGGCTTGTTGTT+TGG - tig0016220:113234-113253 Msa1357990:CDS 45.0%
!! TCTGATGGGCTTGTTGTTTG+GGG - tig0016220:113236-113255 Msa1357990:CDS 45.0%
TCACCTTTCCTCTTAGACAC+AGG + tig0016220:113305-113324 None:intergenic 45.0%
CTTGCATGTTAAGGCAACGA+AGG - tig0016220:113361-113380 Msa1357990:CDS 45.0%
CATGTTAAGGCAACGAAGGT+TGG - tig0016220:113365-113384 Msa1357990:CDS 45.0%
!!! CATTTTCAACTTGGCTTGCC+TGG - tig0016220:113649-113668 Msa1357990:CDS 45.0%
ATCATGCTTACCCGAAATCC+TGG - tig0016220:113688-113707 Msa1357990:CDS 45.0%
AAGACGGTATCCAGGATTTC+GGG + tig0016220:113701-113720 None:intergenic 45.0%
GAAGACGGTATCCAGGATTT+CGG + tig0016220:113702-113721 None:intergenic 45.0%
TCAAAGCTGTCCATGGAAGA+CGG + tig0016220:113717-113736 None:intergenic 45.0%
! TTTGAGCTTGCTCTGCAGTT+TGG - tig0016220:113732-113751 Msa1357990:CDS 45.0%
TGGCTAAACCCAAAGCACAA+GGG + tig0016220:113782-113801 None:intergenic 45.0%
AACCATAACAGCAGTAGGTG+TGG + tig0016220:113802-113821 None:intergenic 45.0%
ACACCTACTGCTGTTATGGT+TGG - tig0016220:113801-113820 Msa1357990:CDS 45.0%
! CAGGGTGTATTGATCAAAGG+AGG - tig0016220:113843-113862 Msa1357990:CDS 45.0%
!! AGCCTTTTAGAAGGAGATGG+GGG + tig0016220:114419-114438 None:intergenic 45.0%
!! CAGCCTTTTAGAAGGAGATG+GGG + tig0016220:114420-114439 None:intergenic 45.0%
!! CTCAGCCTTTTAGAAGGAGA+TGG + tig0016220:114422-114441 None:intergenic 45.0%
TGTTCACTGTTCACCTGAGA+TGG + tig0016220:114619-114638 None:intergenic 45.0%
CAGTGAACATCCACTAGCTA+AGG - tig0016220:114630-114649 Msa1357990:CDS 45.0%
GAAACAAAATCTCGGGCTTC+TGG + tig0016220:114706-114725 None:intergenic 45.0%
AGTAGATCTTCAGCAACAGC+AGG + tig0016220:114820-114839 None:intergenic 45.0%
! ACTTGCTGAAGCCGAAAACA+TGG - tig0016220:114837-114856 Msa1357990:CDS 45.0%
GAAATCACTTCTTGAGCACC+TGG + tig0016220:114934-114953 None:intergenic 45.0%
!! ATTAGGAGCATCATGGTGAC+TGG - tig0016220:114973-114992 Msa1357990:CDS 45.0%
ATCTGCTTTCTGATCCGGTT+TGG + tig0016220:115064-115083 None:intergenic 45.0%
GGCTAGGAACAGAAGGATAA+TGG + tig0016220:115468-115487 None:intergenic 45.0%
!! TTTTCAGGCTTCTGGGTACA+CGG - tig0016220:115765-115784 Msa1357990:intron 45.0%
! TGGCACAGACATTGCTATTG+AGG - tig0016220:115861-115880 Msa1357990:intron 45.0%
! GGAGTTCTTTTCCCTTCTAC+AGG - tig0016220:116024-116043 Msa1357990:intron 45.0%
GCAAACAACACTGACAGAAG+AGG + tig0016220:116091-116110 None:intergenic 45.0%
TCAAGGCTGTTCAGCTTCTT+GGG + tig0016220:116144-116163 None:intergenic 45.0%
AAGCTGAACAGCCTTGACAT+AGG - tig0016220:116147-116166 Msa1357990:CDS 45.0%
AGCTGAACAGCCTTGACATA+GGG - tig0016220:116148-116167 Msa1357990:CDS 45.0%
TCAATATGCCCCCTATGTCA+AGG + tig0016220:116161-116180 None:intergenic 45.0%
CTAGCTGCACACAGTAGAAA+TGG + tig0016220:116247-116266 None:intergenic 45.0%
CATTTCTACTGTGTGCAGCT+AGG - tig0016220:116245-116264 Msa1357990:CDS 45.0%
!!! TTATTTAATTTTATTTTCAT+AGG - tig0016220:112077-112096 Msa1357990:CDS 5.0%
TTCTTACCCCAAAGACGAGG+CGG - tig0016220:110821-110840 Msa1357990:three_prime_UTR 50.0%
GGTGACTTTCGAAACCTCCA+TGG + tig0016220:110871-110890 None:intergenic 50.0%
AGAAGGGTGAAAGATGACGC+GGG + tig0016220:111009-111028 None:intergenic 50.0%
GACAATGAGAGGGTCAGAGT+TGG - tig0016220:111369-111388 Msa1357990:intron 50.0%
GTTGGAGACGTTGGCATACT+AGG - tig0016220:111955-111974 Msa1357990:intron 50.0%
TGTGAGGCAATTGAAGACGC+TGG - tig0016220:112111-112130 Msa1357990:CDS 50.0%
TGAAGACGCTGGATTTGACG+CGG - tig0016220:112122-112141 Msa1357990:CDS 50.0%
!! TCAGCTCTAAAAGCCCTTCC+TGG - tig0016220:112240-112259 Msa1357990:CDS 50.0%
AAAGCCCTTCCTGGAGTTGT+TGG - tig0016220:112249-112268 Msa1357990:CDS 50.0%
GATTCTCTTCGATCACTCCC+TGG - tig0016220:112468-112487 Msa1357990:intron 50.0%
AAGCAGACATAACAGGGCCA+AGG - tig0016220:112544-112563 Msa1357990:intron 50.0%
AGCAGACATAACAGGGCCAA+GGG - tig0016220:112545-112564 Msa1357990:intron 50.0%
CACCCGAAAATGAACTGCAC+TGG + tig0016220:112834-112853 None:intergenic 50.0%
!! CAGTGCAGTTCATTTTCGGG+TGG - tig0016220:112832-112851 Msa1357990:intron 50.0%
! GCGTCGTGGTTCTGCTAATA+TGG - tig0016220:112884-112903 Msa1357990:intron 50.0%
GATGGCGAAGGGAATGTTGT+TGG - tig0016220:113140-113159 Msa1357990:intron 50.0%
TGGCGAAGGGAATGTTGTTG+GGG - tig0016220:113142-113161 Msa1357990:intron 50.0%
CGTCCTGTGTCTAAGAGGAA+AGG - tig0016220:113299-113318 Msa1357990:CDS 50.0%
CGATCAGCAAACTTCTGGAC+AGG + tig0016220:113452-113471 None:intergenic 50.0%
ATCCTGGATACCGTCTTCCA+TGG - tig0016220:113704-113723 Msa1357990:CDS 50.0%
AGCAAGCTCAAAGCTGTCCA+TGG + tig0016220:113724-113743 None:intergenic 50.0%
TATTGCCTGCCCTTGTGCTT+TGG - tig0016220:113770-113789 Msa1357990:CDS 50.0%
ATTGCCTGCCCTTGTGCTTT+GGG - tig0016220:113771-113790 Msa1357990:CDS 50.0%
TAAACCCAAAGCACAAGGGC+AGG + tig0016220:113778-113797 None:intergenic 50.0%
GTGGCTAAACCCAAAGCACA+AGG + tig0016220:113783-113802 None:intergenic 50.0%
AGCCACACCTACTGCTGTTA+TGG - tig0016220:113797-113816 Msa1357990:CDS 50.0%
GTGCCAACCATAACAGCAGT+AGG + tig0016220:113807-113826 None:intergenic 50.0%
ACTGCTGTTATGGTTGGCAC+TGG - tig0016220:113807-113826 Msa1357990:CDS 50.0%
! GTTATGGTTGGCACTGGAGT+TGG - tig0016220:113813-113832 Msa1357990:CDS 50.0%
!! ACTGGAGTTGGTGCATCTCA+GGG - tig0016220:113825-113844 Msa1357990:CDS 50.0%
GATCAAAGGAGGGCAAGCTT+TGG - tig0016220:113854-113873 Msa1357990:CDS 50.0%
!! TGAACTTGTTGCTGCAGCTG+AGG - tig0016220:114382-114401 Msa1357990:CDS 50.0%
!! GCCTTTTAGAAGGAGATGGG+GGG + tig0016220:114418-114437 None:intergenic 50.0%
! CTGAGGCTCAGCCTTTTAGA+AGG + tig0016220:114428-114447 None:intergenic 50.0%
TCAACAACGGCCTTAGCTAG+TGG + tig0016220:114643-114662 None:intergenic 50.0%
GGTCGGTAATAAGGGCTTGA+TGG - tig0016220:114774-114793 Msa1357990:CDS 50.0%
GCCGAAAACATGGCTCAAAC+AGG - tig0016220:114847-114866 Msa1357990:CDS 50.0%
TCTTGAGCACCTGGTTTCAG+TGG + tig0016220:114925-114944 None:intergenic 50.0%
TCATGGTGACTGGAGACAAC+TGG - tig0016220:114983-115002 Msa1357990:CDS 50.0%
CATGGTGACTGGAGACAACT+GGG - tig0016220:114984-115003 Msa1357990:intron 50.0%
ATGGTGACTGGAGACAACTG+GGG - tig0016220:114985-115004 Msa1357990:intron 50.0%
ACATCTGCTGCTACAAGTGC+AGG + tig0016220:115823-115842 None:intergenic 50.0%
TGCACTTGTAGCAGCAGATG+TGG - tig0016220:115822-115841 Msa1357990:intron 50.0%
GCACTTGTAGCAGCAGATGT+GGG - tig0016220:115823-115842 Msa1357990:intron 50.0%
TGTAGCAGCAGATGTGGGAA+TGG - tig0016220:115828-115847 Msa1357990:intron 50.0%
GCAGATGTGGGAATGGCAAT+AGG - tig0016220:115835-115854 Msa1357990:intron 50.0%
CTTGGCATTCCAATAGCAGC+TGG - tig0016220:116003-116022 Msa1357990:intron 50.0%
GCAACCGAAAGCCTGTAGAA+GGG + tig0016220:116038-116057 None:intergenic 50.0%
GTCAAGGCTGTTCAGCTTCT+TGG + tig0016220:116145-116164 None:intergenic 50.0%
GCTGAACAGCCTTGACATAG+GGG - tig0016220:116149-116168 Msa1357990:CDS 50.0%
CTGAACAGCCTTGACATAGG+GGG - tig0016220:116150-116169 Msa1357990:CDS 50.0%
GCCTTCTTACCCCAAAGACG+AGG - tig0016220:110818-110837 Msa1357990:three_prime_UTR 55.0%
!! GCCTCGTCTTTGGGGTAAGA+AGG + tig0016220:110822-110841 None:intergenic 55.0%
TCTTACCCCAAAGACGAGGC+GGG - tig0016220:110822-110841 Msa1357990:three_prime_UTR 55.0%
AAACCTCCATGGACGAAGCG+GGG + tig0016220:110860-110879 None:intergenic 55.0%
GAAACCTCCATGGACGAAGC+GGG + tig0016220:110861-110880 None:intergenic 55.0%
CGAAACCTCCATGGACGAAG+CGG + tig0016220:110862-110881 None:intergenic 55.0%
GGTGAAAGATGACGCGGGTA+CGG + tig0016220:111004-111023 None:intergenic 55.0%
! GAGGGTCAGAGTTGGTTGCA+AGG - tig0016220:111377-111396 Msa1357990:intron 55.0%
! TAGAGCTGATTCAACCGCGG+TGG + tig0016220:112229-112248 None:intergenic 55.0%
GGCTCCAACAACTCCAGGAA+GGG + tig0016220:112256-112275 None:intergenic 55.0%
ACTTGGGCTCCAACAACTCC+AGG + tig0016220:112261-112280 None:intergenic 55.0%
TGGTGAGATCGCCTTCCACA+TGG + tig0016220:112422-112441 None:intergenic 55.0%
CGAAGGGAATGTTGTTGGGG+AGG - tig0016220:113145-113164 Msa1357990:intron 55.0%
AGGCACGTCCTGTGTCTAAG+AGG - tig0016220:113294-113313 Msa1357990:CDS 55.0%
! TGGCTTGCCTGGTTCTTAGC+TGG - tig0016220:113660-113679 Msa1357990:CDS 55.0%
GTCCATGGAAGACGGTATCC+AGG + tig0016220:113709-113728 None:intergenic 55.0%
!! CACTGGAGTTGGTGCATCTC+AGG - tig0016220:113824-113843 Msa1357990:CDS 55.0%
GCCCCCCATCTCCTTCTAAA+AGG - tig0016220:114414-114433 Msa1357990:CDS 55.0%
!! GTCGGTGCCACTATCATCTC+TGG - tig0016220:115672-115691 Msa1357990:intron 55.0%
TTCTGGGTACACGGTGGCTA+TGG - tig0016220:115774-115793 Msa1357990:intron 55.0%
GTGGGAATGGCAATAGGTGC+TGG - tig0016220:115841-115860 Msa1357990:intron 55.0%
GGCAACCGAAAGCCTGTAGA+AGG + tig0016220:116039-116058 None:intergenic 55.0%
ATAGCAGCTCCAGCGATCCA+AGG + tig0016220:116063-116082 None:intergenic 55.0%
TTGGATCGCTGGAGCTGCTA+TGG - tig0016220:116062-116081 Msa1357990:intron 55.0%
CTTACCCCAAAGACGAGGCG+GGG - tig0016220:110823-110842 Msa1357990:three_prime_UTR 60.0%
!! ATGACTTGCTCCGCTTGCGC+TGG - tig0016220:110912-110931 Msa1357990:CDS 60.0%
ATGCACGTCGTGTTCCACCG+CGG - tig0016220:112212-112231 Msa1357990:CDS 60.0%
GGGCTCCAACAACTCCAGGA+AGG + tig0016220:112257-112276 None:intergenic 60.0%
CTCGGGCTTCTGGCCAAGAA+GGG + tig0016220:114696-114715 None:intergenic 60.0%
TCTCGGGCTTCTGGCCAAGA+AGG + tig0016220:114697-114716 None:intergenic 60.0%
TCAGGCTTCTGGGTACACGG+TGG - tig0016220:115768-115787 Msa1357990:intron 60.0%
GGGTACACGGTGGCTATGGT+CGG - tig0016220:115778-115797 Msa1357990:intron 60.0%
TGGTCCCCGCCTCGTCTTTG+GGG + tig0016220:110830-110849 None:intergenic 65.0%
CTGGTCCCCGCCTCGTCTTT+GGG + tig0016220:110831-110850 None:intergenic 65.0%
ACTGGTCCCCGCCTCGTCTT+TGG + tig0016220:110832-110851 None:intergenic 65.0%
CTCGACGGATCCAGCGCAAG+CGG + tig0016220:110925-110944 None:intergenic 65.0%
ACGGTGGCTATGGTCGGCGA+CGG - tig0016220:115784-115803 Msa1357990:intron 65.0%
CAGGCTTTCGGTTGCCGCCT+TGG - tig0016220:116043-116062 Msa1357990:intron 65.0%
GCAGCTCCAGCGATCCAAGG+CGG + tig0016220:116060-116079 None:intergenic 65.0%
GACGAGGCGGGGACCAGTAC+CGG - tig0016220:110834-110853 Msa1357990:three_prime_UTR 70.0%
TACCGGCCCCGCTTCGTCCA+TGG - tig0016220:110851-110870 Msa1357990:three_prime_UTR 70.0%
CTCCATGGACGAAGCGGGGC+CGG + tig0016220:110856-110875 None:intergenic 70.0%
CGGTTGCCGCCTTGGATCGC+TGG - tig0016220:116051-116070 Msa1357990:intron 70.0%
GGACGAAGCGGGGCCGGTAC+TGG + tig0016220:110850-110869 None:intergenic 75.0%
CGGCCCCGCTTCGTCCATGG+AGG - tig0016220:110854-110873 Msa1357990:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
tig0016220 gene 110716 116385 110716 ID=Msa1357990;Name=Msa1357990
tig0016220 mRNA 110716 116385 110716 ID=Msa1357990-mRNA-1;Parent=Msa1357990;Name=Msa1357990-mRNA-1;_AED=0.07;_eAED=0.07;_QI=22|1|1|1|0.8|1|6|164|1000
tig0016220 exon 110716 111329 110716 ID=Msa1357990-mRNA-1:exon:10620;Parent=Msa1357990-mRNA-1
tig0016220 exon 112000 112476 112000 ID=Msa1357990-mRNA-1:exon:10619;Parent=Msa1357990-mRNA-1
tig0016220 exon 112698 112820 112698 ID=Msa1357990-mRNA-1:exon:10618;Parent=Msa1357990-mRNA-1
tig0016220 exon 113211 113465 113211 ID=Msa1357990-mRNA-1:exon:10617;Parent=Msa1357990-mRNA-1
tig0016220 exon 113605 115002 113605 ID=Msa1357990-mRNA-1:exon:10616;Parent=Msa1357990-mRNA-1
tig0016220 exon 116064 116385 116064 ID=Msa1357990-mRNA-1:exon:10615;Parent=Msa1357990-mRNA-1
tig0016220 five_prime_UTR 116364 116385 116364 ID=Msa1357990-mRNA-1:five_prime_utr;Parent=Msa1357990-mRNA-1
tig0016220 CDS 116064 116363 116064 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 CDS 113605 115002 113605 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 CDS 113211 113465 113211 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 CDS 112698 112820 112698 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 CDS 112000 112476 112000 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 CDS 110880 111329 110880 ID=Msa1357990-mRNA-1:cds;Parent=Msa1357990-mRNA-1
tig0016220 three_prime_UTR 110716 110879 110716 ID=Msa1357990-mRNA-1:three_prime_utr;Parent=Msa1357990-mRNA-1
Gene Sequence

>Msa1357990

ATGGCGAAGCTATTATCCTTAGCTTGTTTTCGAAACGAAGGATGGCACAATCTTTCAGCACGATCTCACTATCCTTCAATGCCTTCTTACCCCAAAGACGAGGCGGGGACCAGTACCGGCCCCGCTTCGTCCATGGAGGTTTCGAAAGTCACCGGACTTTTCTCTGTTCATGGAATGACTTGCTCCGCTTGCGCTGGATCCGTCGAGAAATCCATCAAACGGCTACATGGAATTCATGAAGCTGTTGTTGATGTACTTAATAACCGTACCCGCGTCATCTTTCACCCTTCTTTTGTTAACGAGGAGGCTATTTGTGAGGCAATTGAAGACGCTGGATTTGACGCGGCATTATTAACAGATGTAATGAATGAGAACACTATTCAAGTATGCCGTATACAAATAAAAGGAATGACATGCACGTCGTGTTCCACCGCGGTTGAATCAGCTCTAAAAGCCCTTCCTGGAGTTGTTGGAGCCCAAGTAGCTTTAGCAACAGAAGAGGCTCAAGTTCATTACAATCCAAACATCATTACTCATAGCCAAATCTTGGAAGCTGTAGATGAAGCTGGATTTGAAGCAACACTCATTAGTTCAAGTGAAGACTTAAGCAAAATCGATCTCCATGTGGAAGGCGATCTCACCAATAATGCCATGATCAAACTCGTCGAAGATTCTCTTCGATCACTCCCTGGAGTTTTAGAATTACACACCAATCTCGAATTCAACAAAATTTCGCTTTCTTATAAAGCAGACATAACAGGGCCAAGGGATTTCATTAATGTGATTGTAGAAACTAGTAATGGAAATTTGAAGGCGAAAATATTTCCCAGTGAAGGTGGAAGAAGAGATACTCATAGAAAAAAGGAAATTAAAAGCTATTACAAATCTTTTTTATGGAGTTTGGTGTTTACTATTCCAGTTTTTCTAACTTCCATGGTGTTTATGTATATACCTGGAATAAAAAATTTATTGGATTCGAAAATCGTGAAGATGCTTACTATTGGAGAGGTTATTCGTTGGGTGCTTGCGACACCAGTGCAGTTCATTTTCGGGTGGCGATTTTATATTGGTGCTTATAAATCATTGCGTCGTGGTTCTGCTAATATGGATGTGCTGATAGCACTGGGAACAAATGCAGCTTATTTCTATTCTGTTTATTCTGTTTTGAGGGCTGCTACTTCTAAGGTTTTTGAAGGTACTGATTTCTTTGAGACTAGTGCGATGCTTATTTCGTTTATTCTGTTAGGAAAGTATCTTGAGGTTTTAGCTAAGGGGAAAACATCGAATGCGATTGCGAAGCTAATGAATTTGACACCTGATACTGCTATATTGTTGAGTTTGGATGGCGAAGGGAATGTTGTTGGGGAGGAAGAAATTGATAGTAGGTTGGTTAAGAAGAATGATGTGATTAAGATTATTCCGGGTGCAAAAGTTGCTTCTGATGGGCTTGTTGTTTGGGGACAGAGTCATGTGAATGAGAGTATGATAACTGGTGAGGCACGTCCTGTGTCTAAGAGGAAAGGTGATACTGTTATCGGTGGAACTTTGAATGAGAATGGTGTCTTGCATGTTAAGGCAACGAAGGTTGGATCAGAAAGTGCTCTTTCACAGATTGTTAGACTTGTTGAGTCTGCTCAAATGGCTAAAGCTCCTGTCCAGAAGTTTGCTGATCGCATTTCCAAATACTTTGTGCCTTTGGTGATCTTGATCTCATTTTCAACTTGGCTTGCCTGGTTCTTAGCTGGAAAATATCATGCTTACCCGAAATCCTGGATACCGTCTTCCATGGACAGCTTTGAGCTTGCTCTGCAGTTTGGAATTTCTGTCATGGTTATTGCCTGCCCTTGTGCTTTGGGTTTAGCCACACCTACTGCTGTTATGGTTGGCACTGGAGTTGGTGCATCTCAGGGTGTATTGATCAAAGGAGGGCAAGCTTTGGAAAGTGCACATAAGGTAAACTGCATTGTTTTTGACAAGACCGGTACTCTTACTATTGGGAAGCCAGTGATAGTAAATACAAAACTATTGACAAAAATGGTACTCCGGGAATTCTATGAACTTGTTGCTGCAGCTGAGGTGAACAGTGAACATCCACTAGCTAAGGCCGTTGTTGAGTATGCCAAAAAATTTAAAGATGAAGAGAACCCTTCTTGGCCAGAAGCCCGAGATTTTGTTTCCATTACTGGACATGGAGTAAAGGCCACCGTTCGTAACAAGCAAATAATGGTCGGTAATAAGGGCTTGATGGTTGAACATAATATTTCAATTCCTGCTGTTGCTGAAGATCTACTTGCTGAAGCCGAAAACATGGCTCAAACAGGAATTTTAGTATCTATAAATGGGGAAGTAGCTGGGGTTTTAGCAATATCTGATCCACTGAAACCAGGTGCTCAAGAAGTGATTTCCATTCTAAAGTCTATGAAAATTAGGAGCATCATGGTGACTGGAGACAACTGGGGAACTGCTAATTCCATTGCAAGGGAAGTTGGAATTGACGATGTTATTGCTGAAGCCAAACCGGATCAGAAAGCAGATAAAGTGAAAAACTTGCAGGCTTCTGGGTACACGGTGGCTATGGTCGGCGACGGTATCAATGATTCACCTGCACTTGTAGCAGCAGATGTGGGAATGGCAATAGGTGCTGGCACAGACATTGCTATTGAGGCAGCTGATATTGTACTAATGAAGAGCAACTTGGAGGATGTCATAACTGCCATTGATCTTTCAAGAAAAACTTTATTTCGTATACGCCTCAATTATGTTTGGGCTTTGGGTTATAATTTGCTTGGCATTCCAATAGCAGCTGGAGTTCTTTTCCCTTCTACAGGCTTTCGGTTGCCGCCTTGGATCGCTGGAGCTGCTATGGCTGCCTCTTCTGTCAGTGTTGTTTGCTGTTCTCTGTTGTTGAAATATTACAAGAGACCCAAGAAGCTGAACAGCCTTGACATAGGGGGCATATTGATCGAGACATCGAGTGATCCTTTGATCATACATGACGATTGA

Protein sequence

>Msa1357990

MAKLLSLACFRNEGWHNLSARSHYPSMPSYPKDEAGTSTGPASSMEVSKVTGLFSVHGMTCSACAGSVEKSIKRLHGIHEAVVDVLNNRTRVIFHPSFVNEEAICEAIEDAGFDAALLTDVMNENTIQVCRIQIKGMTCTSCSTAVESALKALPGVVGAQVALATEEAQVHYNPNIITHSQILEAVDEAGFEATLISSSEDLSKIDLHVEGDLTNNAMIKLVEDSLRSLPGVLELHTNLEFNKISLSYKADITGPRDFINVIVETSNGNLKAKIFPSEGGRRDTHRKKEIKSYYKSFLWSLVFTIPVFLTSMVFMYIPGIKNLLDSKIVKMLTIGEVIRWVLATPVQFIFGWRFYIGAYKSLRRGSANMDVLIALGTNAAYFYSVYSVLRAATSKVFEGTDFFETSAMLISFILLGKYLEVLAKGKTSNAIAKLMNLTPDTAILLSLDGEGNVVGEEEIDSRLVKKNDVIKIIPGAKVASDGLVVWGQSHVNESMITGEARPVSKRKGDTVIGGTLNENGVLHVKATKVGSESALSQIVRLVESAQMAKAPVQKFADRISKYFVPLVILISFSTWLAWFLAGKYHAYPKSWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTIGKPVIVNTKLLTKMVLREFYELVAAAEVNSEHPLAKAVVEYAKKFKDEENPSWPEARDFVSITGHGVKATVRNKQIMVGNKGLMVEHNISIPAVAEDLLAEAENMAQTGILVSINGEVAGVLAISDPLKPGAQEVISILKSMKIRSIMVTGDNWGTANSIAREVGIDDVIAEAKPDQKADKVKNLQASGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTLFRIRLNYVWALGYNLLGIPIAAGVLFPSTGFRLPPWIAGAAMAASSVSVVCCSLLLKYYKRPKKLNSLDIGGILIETSSDPLIIHDD*