Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321250 | sp|Q9LRR5|DRL21_ARATH | 35.294 | 204 | 117 | 6 | 12 | 204 | 1139 | 1338 | 2.82e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321250 | A0A2K3NR88 | 69.903 | 206 | 62 | 0 | 1 | 206 | 947 | 1152 | 3.46e-84 | 281 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011040 | Msa1321250 | 0.805848 | 1.095040e-49 | -8.615850e-47 |
| Msa0014590 | Msa1321250 | 0.803530 | 3.336906e-49 | -8.615850e-47 |
| Msa0048380 | Msa1321250 | 0.800924 | 1.146877e-48 | -8.615850e-47 |
| Msa0074620 | Msa1321250 | 0.820283 | 7.445818e-53 | -8.615850e-47 |
| Msa0078160 | Msa1321250 | -0.800974 | 1.120151e-48 | -8.615850e-47 |
| Msa0078170 | Msa1321250 | -0.806967 | 6.359438e-50 | -8.615850e-47 |
| Msa0095910 | Msa1321250 | 0.804031 | 2.625091e-49 | -8.615850e-47 |
| Msa0117650 | Msa1321250 | 0.817303 | 3.536305e-52 | -8.615850e-47 |
| Msa0604280 | Msa1321250 | 0.808214 | 3.456873e-50 | -8.615850e-47 |
| Msa0631700 | Msa1321250 | 0.812536 | 4.035237e-51 | -8.615850e-47 |
| Msa0633070 | Msa1321250 | 0.814492 | 1.498566e-51 | -8.615850e-47 |
| Msa0639410 | Msa1321250 | 0.805809 | 1.116038e-49 | -8.615850e-47 |
| Msa0640290 | Msa1321250 | 0.802699 | 4.955643e-49 | -8.615850e-47 |
| Msa0643840 | Msa1321250 | 0.815829 | 7.563291e-52 | -8.615850e-47 |
| Msa0645150 | Msa1321250 | 0.806640 | 7.458434e-50 | -8.615850e-47 |
| Msa0655370 | Msa1321250 | 0.803752 | 2.999989e-49 | -8.615850e-47 |
| Msa0670360 | Msa1321250 | 0.818201 | 2.217768e-52 | -8.615850e-47 |
| Msa0680460 | Msa1321250 | 0.813299 | 2.745643e-51 | -8.615850e-47 |
| Msa0719330 | Msa1321250 | -0.801092 | 1.060029e-48 | -8.615850e-47 |
| Msa0727480 | Msa1321250 | 0.803425 | 3.507616e-49 | -8.615850e-47 |
| Msa0792410 | Msa1321250 | 0.806345 | 8.605181e-50 | -8.615850e-47 |
| Msa0798150 | Msa1321250 | 0.801694 | 7.978996e-49 | -8.615850e-47 |
| Msa0814160 | Msa1321250 | 0.811316 | 7.441474e-51 | -8.615850e-47 |
| Msa0814660 | Msa1321250 | 0.807825 | 4.183947e-50 | -8.615850e-47 |
| Msa0129850 | Msa1321250 | 0.802717 | 4.913080e-49 | -8.615850e-47 |
| Msa0136090 | Msa1321250 | 0.811341 | 7.347718e-51 | -8.615850e-47 |
| Msa0170990 | Msa1321250 | 0.818432 | 1.965987e-52 | -8.615850e-47 |
| Msa1273320 | Msa1321250 | 0.802773 | 4.785357e-49 | -8.615850e-47 |
| Msa1279750 | Msa1321250 | 0.816622 | 5.030040e-52 | -8.615850e-47 |
| Msa1296490 | Msa1321250 | 0.803667 | 3.125496e-49 | -8.615850e-47 |
| Msa1300570 | Msa1321250 | 0.815011 | 1.150230e-51 | -8.615850e-47 |
| Msa1320160 | Msa1321250 | 0.823109 | 1.652929e-53 | -8.615850e-47 |
| Msa1321240 | Msa1321250 | 0.803828 | 2.893744e-49 | -8.615850e-47 |
| Msa1321250 | Msa1355340 | 0.816680 | 4.881464e-52 | -8.615850e-47 |
| Msa1321250 | Msa1357840 | 0.812423 | 4.270684e-51 | -8.615850e-47 |
| Msa1321250 | Msa1362520 | 0.803826 | 2.896133e-49 | -8.615850e-47 |
| Msa1321250 | Msa1379270 | -0.800371 | 1.487528e-48 | -8.615850e-47 |
| Msa1321250 | Msa1395150 | 0.800439 | 1.440203e-48 | -8.615850e-47 |
| Msa1321250 | Msa1411550 | 0.805684 | 1.185299e-49 | -8.615850e-47 |
| Msa1321250 | Msa1453890 | 0.807592 | 4.688186e-50 | -8.615850e-47 |
| Msa1321250 | Msa1456600 | 0.830976 | 2.167974e-55 | -8.615850e-47 |
| Msa1321250 | Msa1462610 | 0.808134 | 3.595390e-50 | -8.615850e-47 |
| Msa0366510 | Msa1321250 | 0.836132 | 1.119398e-56 | -8.615850e-47 |
| Msa0409490 | Msa1321250 | 0.801438 | 9.005859e-49 | -8.615850e-47 |
| Msa0414480 | Msa1321250 | 0.827620 | 1.414691e-54 | -8.615850e-47 |
| Msa0418160 | Msa1321250 | 0.843930 | 1.035136e-58 | -8.615850e-47 |
| Msa0464310 | Msa1321250 | 0.825357 | 4.898727e-54 | -8.615850e-47 |
| Msa0471130 | Msa1321250 | -0.800511 | 1.392773e-48 | -8.615850e-47 |
| Msa1005370 | Msa1321250 | 0.812409 | 4.302047e-51 | -8.615850e-47 |
| Msa1006170 | Msa1321250 | 0.806966 | 6.362822e-50 | -8.615850e-47 |
| Msa1026050 | Msa1321250 | 0.815050 | 1.127499e-51 | -8.615850e-47 |
| Msa1035050 | Msa1321250 | 0.802092 | 6.609649e-49 | -8.615850e-47 |
| Msa1037360 | Msa1321250 | 0.802204 | 6.268620e-49 | -8.615850e-47 |
| Msa1061670 | Msa1321250 | 0.835378 | 1.737650e-56 | -8.615850e-47 |
| Msa1064940 | Msa1321250 | 0.805654 | 1.202596e-49 | -8.615850e-47 |
| Msa1075090 | Msa1321250 | 0.800671 | 1.292041e-48 | -8.615850e-47 |
| Msa1106960 | Msa1321250 | 0.823760 | 1.164279e-53 | -8.615850e-47 |
| Msa0253230 | Msa1321250 | -0.803046 | 4.201431e-49 | -8.615850e-47 |
| Msa0269710 | Msa1321250 | 0.816334 | 5.833768e-52 | -8.615850e-47 |
| Msa0307630 | Msa1321250 | 0.803768 | 2.978103e-49 | -8.615850e-47 |
| Msa0349890 | Msa1321250 | 0.801214 | 1.000823e-48 | -8.615850e-47 |
| Msa0357470 | Msa1321250 | 0.800222 | 1.594626e-48 | -8.615850e-47 |
| Msa1107250 | Msa1321250 | 0.810237 | 1.273700e-50 | -8.615850e-47 |
| Msa1123000 | Msa1321250 | 0.802102 | 6.580020e-49 | -8.615850e-47 |
| Msa1156740 | Msa1321250 | 0.800316 | 1.525835e-48 | -8.615850e-47 |
| Msa1191270 | Msa1321250 | 0.825050 | 5.791315e-54 | -8.615850e-47 |
| Msa1208140 | Msa1321250 | 0.805832 | 1.103222e-49 | -8.615850e-47 |
| Msa1223710 | Msa1321250 | 0.807174 | 5.749844e-50 | -8.615850e-47 |
| Msa0490100 | Msa1321250 | 0.807373 | 5.216634e-50 | -8.615850e-47 |
| Msa0529420 | Msa1321250 | 0.808464 | 3.058298e-50 | -8.615850e-47 |
| Msa0531800 | Msa1321250 | 0.804894 | 1.735271e-49 | -8.615850e-47 |
| Msa0535570 | Msa1321250 | 0.831691 | 1.446499e-55 | -8.615850e-47 |
| Msa0538440 | Msa1321250 | 0.803829 | 2.891483e-49 | -8.615850e-47 |
| Msa0538530 | Msa1321250 | 0.804860 | 1.763704e-49 | -8.615850e-47 |
| Msa0554660 | Msa1321250 | 0.815031 | 1.138588e-51 | -8.615850e-47 |
| Msa0561830 | Msa1321250 | 0.801269 | 9.751016e-49 | -8.615850e-47 |
| Msa0579530 | Msa1321250 | 0.810661 | 1.031421e-50 | -8.615850e-47 |
| Msa0587730 | Msa1321250 | 0.809486 | 1.848042e-50 | -8.615850e-47 |
| Msa0591490 | Msa1321250 | 0.809639 | 1.712824e-50 | -8.615850e-47 |
| Msa0597800 | Msa1321250 | 0.842858 | 2.000751e-58 | -8.615850e-47 |
| Msa0597820 | Msa1321250 | 0.828939 | 6.802962e-55 | -8.615850e-47 |
| Msa0874750 | Msa1321250 | 0.804418 | 2.181440e-49 | -8.615850e-47 |
| Msa0896920 | Msa1321250 | 0.825035 | 5.837314e-54 | -8.615850e-47 |
| Msa0941120 | Msa1321250 | 0.818437 | 1.960757e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321250 | MtrunA17_Chr8g0352861 | 61.165 | 206 | 80 | 0 | 1 | 206 | 953 | 1158 | 7.57e-78 | 254 |
| Msa1321250 | MtrunA17_Chr2g0299151 | 57.360 | 197 | 83 | 1 | 12 | 208 | 946 | 1141 | 1.19e-62 | 211 |
| Msa1321250 | MtrunA17_Chr8g0352831 | 54.369 | 206 | 91 | 2 | 1 | 206 | 956 | 1158 | 3.28e-60 | 204 |
| Msa1321250 | MtrunA17_Chr3g0084971 | 36.683 | 199 | 112 | 5 | 13 | 203 | 967 | 1159 | 5.30e-29 | 114 |
| Msa1321250 | MtrunA17_Chr3g0113741 | 38.857 | 175 | 95 | 5 | 34 | 201 | 158 | 327 | 3.69e-25 | 102 |
| Msa1321250 | MtrunA17_Chr3g0113801 | 38.857 | 175 | 95 | 5 | 34 | 201 | 194 | 363 | 4.64e-25 | 102 |
| Msa1321250 | MtrunA17_Chr3g0113511 | 38.506 | 174 | 95 | 5 | 35 | 201 | 159 | 327 | 1.85e-24 | 100 |
| Msa1321250 | MtrunA17_Chr1g0169901 | 41.844 | 141 | 74 | 2 | 13 | 145 | 902 | 1042 | 9.40e-23 | 96.3 |
| Msa1321250 | MtrunA17_Chr2g0282991 | 38.286 | 175 | 99 | 5 | 36 | 206 | 996 | 1165 | 2.02e-22 | 95.1 |
| Msa1321250 | MtrunA17_Chr2g0282921 | 42.105 | 114 | 65 | 1 | 39 | 152 | 58 | 170 | 4.06e-21 | 86.7 |
| Msa1321250 | MtrunA17_Chr3g0082131 | 36.082 | 194 | 98 | 7 | 36 | 206 | 984 | 1174 | 1.15e-18 | 84.3 |
| Msa1321250 | MtrunA17_Chr3g0078351 | 37.405 | 131 | 78 | 2 | 33 | 160 | 255 | 384 | 5.94e-17 | 79.0 |
| Msa1321250 | MtrunA17_Chr1g0164581 | 37.762 | 143 | 83 | 4 | 39 | 177 | 963 | 1103 | 3.68e-16 | 77.0 |
| Msa1321250 | MtrunA17_Chr3g0083641 | 33.149 | 181 | 112 | 6 | 13 | 186 | 920 | 1098 | 1.13e-14 | 72.8 |
| Msa1321250 | MtrunA17_Chr3g0083681 | 32.099 | 162 | 102 | 3 | 13 | 167 | 919 | 1079 | 1.18e-14 | 72.8 |
| Msa1321250 | MtrunA17_Chr3g0083751 | 36.691 | 139 | 83 | 4 | 33 | 167 | 972 | 1109 | 1.49e-14 | 72.4 |
| Msa1321250 | MtrunA17_Chr3g0083621 | 35.000 | 140 | 85 | 4 | 33 | 167 | 976 | 1114 | 3.09e-14 | 71.2 |
| Msa1321250 | MtrunA17_Chr3g0091971 | 30.890 | 191 | 120 | 6 | 33 | 213 | 905 | 1093 | 1.71e-13 | 69.3 |
| Msa1321250 | MtrunA17_Chr3g0091951 | 30.516 | 213 | 133 | 6 | 13 | 212 | 51 | 261 | 2.45e-13 | 68.2 |
| Msa1321250 | MtrunA17_Chr2g0299121 | 50.000 | 78 | 34 | 2 | 2 | 77 | 949 | 1023 | 3.41e-13 | 68.2 |
| Msa1321250 | MtrunA17_Chr3g0086621 | 34.328 | 201 | 105 | 11 | 13 | 201 | 865 | 1050 | 3.59e-13 | 68.2 |
| Msa1321250 | MtrunA17_Chr3g0089471 | 32.948 | 173 | 110 | 5 | 35 | 203 | 1032 | 1202 | 4.41e-13 | 68.2 |
| Msa1321250 | MtrunA17_Chr3g0089591 | 32.948 | 173 | 110 | 5 | 35 | 203 | 1035 | 1205 | 5.80e-13 | 67.8 |
| Msa1321250 | MtrunA17_Chr4g0008461 | 34.532 | 139 | 86 | 4 | 33 | 167 | 948 | 1085 | 6.87e-13 | 67.4 |
| Msa1321250 | MtrunA17_Chr3g0083591 | 31.481 | 162 | 103 | 3 | 13 | 167 | 902 | 1062 | 7.53e-13 | 67.4 |
| Msa1321250 | MtrunA17_Chr3g0085621 | 32.850 | 207 | 94 | 10 | 12 | 203 | 6 | 182 | 1.04e-12 | 65.9 |
| Msa1321250 | MtrunA17_Chr2g0299091 | 48.718 | 78 | 35 | 2 | 2 | 77 | 923 | 997 | 2.36e-12 | 65.9 |
| Msa1321250 | MtrunA17_Chr3g0087701 | 41.667 | 108 | 48 | 6 | 105 | 201 | 950 | 1053 | 1.65e-11 | 63.2 |
| Msa1321250 | MtrunA17_Chr3g0085651 | 40.351 | 114 | 52 | 5 | 100 | 201 | 1173 | 1282 | 3.07e-11 | 62.4 |
| Msa1321250 | MtrunA17_Chr3g0085791 | 42.857 | 91 | 49 | 2 | 120 | 208 | 117 | 206 | 6.62e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321250 | AT3G14460.1 | 35.294 | 204 | 117 | 6 | 12 | 204 | 1139 | 1338 | 2.87e-25 | 103 |
Find 47 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGGAAATGATACAAATT+TGG | 0.174784 | 8_4:-26621727 | None:intergenic |
| TCGTTTGTCTATTATAAATA+TGG | 0.220080 | 8_4:+26621998 | Msa1321250:CDS |
| AATTCAAGAGTCAGGAGTTT+TGG | 0.226841 | 8_4:-26621621 | None:intergenic |
| CAGTGAGGCGATAAGAAGTT+TGG | 0.279553 | 8_4:-26621943 | None:intergenic |
| TTGGGAAATGATACAAATTT+GGG | 0.295311 | 8_4:-26621726 | None:intergenic |
| CATCAATGTCTAAAGATAAA+AGG | 0.303051 | 8_4:-26621557 | None:intergenic |
| TTACATCTCTGATCATTAAA+TGG | 0.306217 | 8_4:+26621700 | Msa1321250:CDS |
| TGTGGAGTTTCATGCGTATA+AGG | 0.308555 | 8_4:-26621914 | None:intergenic |
| ATGGTGAAGCTCTGAAGTTC+TGG | 0.323712 | 8_4:+26622227 | Msa1321250:CDS |
| AATGTTTCAATTCAAGAGTC+AGG | 0.413601 | 8_4:-26621629 | None:intergenic |
| TTCATGCGTATAAGGCTTGA+TGG | 0.423789 | 8_4:-26621906 | None:intergenic |
| GCACTAGATGACTTGAATAA+TGG | 0.425125 | 8_4:+26622208 | Msa1321250:CDS |
| TCATACCTCTCTCGAATCAT+TGG | 0.431387 | 8_4:+26621482 | Msa1321250:CDS |
| CCTAAGGTAATATTCATAGT+TGG | 0.435024 | 8_4:-26621519 | None:intergenic |
| AAGAGAGTGTGCATACATTC+AGG | 0.438884 | 8_4:-26621816 | None:intergenic |
| CTAAGGTAATATTCATAGTT+GGG | 0.462617 | 8_4:-26621518 | None:intergenic |
| TCGCCTCACTGAAATATGCC+TGG | 0.464129 | 8_4:+26621955 | Msa1321250:CDS |
| CCAACTATGAATATTACCTT+AGG | 0.472383 | 8_4:+26621519 | Msa1321250:CDS |
| CGCCTCACTGAAATATGCCT+GGG | 0.478200 | 8_4:+26621956 | Msa1321250:CDS |
| ATCTTCAGTTTAGTAAGCGT+TGG | 0.480176 | 8_4:-26621840 | None:intergenic |
| CAACTTGAGTCGTTCTCTGA+TGG | 0.488488 | 8_4:+26621876 | Msa1321250:CDS |
| ACGGGAAGCAACCCTTCATC+GGG | 0.489032 | 8_4:-26622035 | None:intergenic |
| AGGATTCTCTGCACCTAGCT+TGG | 0.491050 | 8_4:+26621752 | Msa1321250:CDS |
| TGGAAGGAACGATGCTTGAA+TGG | 0.498199 | 8_4:+26621442 | None:intergenic |
| TTCGAGAGAGGTATGAGATA+AGG | 0.515731 | 8_4:-26621475 | None:intergenic |
| TCTCGAATCATTGGTAATTG+AGG | 0.517270 | 8_4:+26621491 | Msa1321250:CDS |
| GACGGGAAGCAACCCTTCAT+CGG | 0.518296 | 8_4:-26622036 | None:intergenic |
| CAAATTTGTATCATTTCCCA+AGG | 0.524359 | 8_4:+26621728 | Msa1321250:CDS |
| TAAAGAAGTGTTGATTCCCC+AGG | 0.527044 | 8_4:-26621973 | None:intergenic |
| GAAATTGTAGCAACAACCTA+AGG | 0.531536 | 8_4:-26621535 | None:intergenic |
| CTTGAGTCGTTCTCTGATGG+AGG | 0.534804 | 8_4:+26621879 | Msa1321250:CDS |
| ATTTAATGATCAGAGATGTA+AGG | 0.535582 | 8_4:-26621698 | None:intergenic |
| AGGTGCAGAGAATCCTCCCT+TGG | 0.535651 | 8_4:-26621745 | None:intergenic |
| TTATATTTAGTGTTCATGCT+CGG | 0.538165 | 8_4:+26622174 | Msa1321250:intron |
| ATTTGAAAATGCTCCAAGCT+AGG | 0.551175 | 8_4:-26621765 | None:intergenic |
| TAATCTTGAAATGATTTCAA+AGG | 0.557939 | 8_4:+26621656 | Msa1321250:CDS |
| GGTGCAGAGAATCCTCCCTT+GGG | 0.564699 | 8_4:-26621744 | None:intergenic |
| TTTGTATCATTTCCCAAGGG+AGG | 0.568883 | 8_4:+26621732 | Msa1321250:CDS |
| TCAGAGAACGACTCAAGTTG+TGG | 0.577199 | 8_4:-26621873 | None:intergenic |
| TAAGAAGTTTGGAGCATGTG+TGG | 0.592269 | 8_4:-26621932 | None:intergenic |
| TGGGAAGTAATCTAGTGGGA+AGG | 0.630584 | 8_4:-26621601 | None:intergenic |
| AAATTTGTATCATTTCCCAA+GGG | 0.660173 | 8_4:+26621729 | Msa1321250:CDS |
| TTTAGTGTTCATGCTCGGCG+AGG | 0.664924 | 8_4:+26622179 | Msa1321250:intron |
| GCCTCACTGAAATATGCCTG+GGG | 0.672221 | 8_4:+26621957 | Msa1321250:CDS |
| AATTACCAATGATTCGAGAG+AGG | 0.673141 | 8_4:-26621487 | None:intergenic |
| TGGGAAATGATACAAATTTG+GGG | 0.688812 | 8_4:-26621725 | None:intergenic |
| TCCCCAGGCATATTTCAGTG+AGG | 0.721161 | 8_4:-26621958 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCTTGAAATGATTTCAA+AGG | + | chr8_4:26621656-26621675 | Msa1321250:CDS | 20.0% |
| !! | TCGTTTGTCTATTATAAATA+TGG | + | chr8_4:26621998-26622017 | Msa1321250:CDS | 20.0% |
| !! | AAAATTGTTGTATGAAAAAG+AGG | - | chr8_4:26622074-26622093 | None:intergenic | 20.0% |
| !! | TAATCTTGAAATGATTTCAA+AGG | + | chr8_4:26621656-26621675 | Msa1321250:CDS | 20.0% |
| !! | TCGTTTGTCTATTATAAATA+TGG | + | chr8_4:26621998-26622017 | Msa1321250:CDS | 20.0% |
| !! | AAAATTGTTGTATGAAAAAG+AGG | - | chr8_4:26622074-26622093 | None:intergenic | 20.0% |
| ! | CTAAGGTAATATTCATAGTT+GGG | - | chr8_4:26621521-26621540 | None:intergenic | 25.0% |
| ! | CATCAATGTCTAAAGATAAA+AGG | - | chr8_4:26621560-26621579 | None:intergenic | 25.0% |
| !! | CTTTTATCTTTAGACATTGA+TGG | + | chr8_4:26621558-26621577 | Msa1321250:CDS | 25.0% |
| ! | ATTTAATGATCAGAGATGTA+AGG | - | chr8_4:26621701-26621720 | None:intergenic | 25.0% |
| ! | TTACATCTCTGATCATTAAA+TGG | + | chr8_4:26621700-26621719 | Msa1321250:CDS | 25.0% |
| ! | TTGGGAAATGATACAAATTT+GGG | - | chr8_4:26621729-26621748 | None:intergenic | 25.0% |
| ! | AAATTTGTATCATTTCCCAA+GGG | + | chr8_4:26621729-26621748 | Msa1321250:CDS | 25.0% |
| ! | TTATATTTAGTGTTCATGCT+CGG | + | chr8_4:26622174-26622193 | Msa1321250:intron | 25.0% |
| ! | CTAAGGTAATATTCATAGTT+GGG | - | chr8_4:26621521-26621540 | None:intergenic | 25.0% |
| ! | CATCAATGTCTAAAGATAAA+AGG | - | chr8_4:26621560-26621579 | None:intergenic | 25.0% |
| !! | CTTTTATCTTTAGACATTGA+TGG | + | chr8_4:26621558-26621577 | Msa1321250:CDS | 25.0% |
| ! | ATTTAATGATCAGAGATGTA+AGG | - | chr8_4:26621701-26621720 | None:intergenic | 25.0% |
| ! | TTACATCTCTGATCATTAAA+TGG | + | chr8_4:26621700-26621719 | Msa1321250:CDS | 25.0% |
| ! | TTGGGAAATGATACAAATTT+GGG | - | chr8_4:26621729-26621748 | None:intergenic | 25.0% |
| ! | AAATTTGTATCATTTCCCAA+GGG | + | chr8_4:26621729-26621748 | Msa1321250:CDS | 25.0% |
| ! | TTATATTTAGTGTTCATGCT+CGG | + | chr8_4:26622174-26622193 | Msa1321250:intron | 25.0% |
| CCTAAGGTAATATTCATAGT+TGG | - | chr8_4:26621522-26621541 | None:intergenic | 30.0% | |
| CCAACTATGAATATTACCTT+AGG | + | chr8_4:26621519-26621538 | Msa1321250:CDS | 30.0% | |
| AATGTTTCAATTCAAGAGTC+AGG | - | chr8_4:26621632-26621651 | None:intergenic | 30.0% | |
| TGGGAAATGATACAAATTTG+GGG | - | chr8_4:26621728-26621747 | None:intergenic | 30.0% | |
| CTTGGGAAATGATACAAATT+TGG | - | chr8_4:26621730-26621749 | None:intergenic | 30.0% | |
| CAAATTTGTATCATTTCCCA+AGG | + | chr8_4:26621728-26621747 | Msa1321250:CDS | 30.0% | |
| ! | GCATTTTCAAATCTACTCAT+TGG | + | chr8_4:26621776-26621795 | Msa1321250:CDS | 30.0% |
| CCTAAGGTAATATTCATAGT+TGG | - | chr8_4:26621522-26621541 | None:intergenic | 30.0% | |
| CCAACTATGAATATTACCTT+AGG | + | chr8_4:26621519-26621538 | Msa1321250:CDS | 30.0% | |
| AATGTTTCAATTCAAGAGTC+AGG | - | chr8_4:26621632-26621651 | None:intergenic | 30.0% | |
| TGGGAAATGATACAAATTTG+GGG | - | chr8_4:26621728-26621747 | None:intergenic | 30.0% | |
| CTTGGGAAATGATACAAATT+TGG | - | chr8_4:26621730-26621749 | None:intergenic | 30.0% | |
| CAAATTTGTATCATTTCCCA+AGG | + | chr8_4:26621728-26621747 | Msa1321250:CDS | 30.0% | |
| ! | GCATTTTCAAATCTACTCAT+TGG | + | chr8_4:26621776-26621795 | Msa1321250:CDS | 30.0% |
| AATTACCAATGATTCGAGAG+AGG | - | chr8_4:26621490-26621509 | None:intergenic | 35.0% | |
| ! | TCTCGAATCATTGGTAATTG+AGG | + | chr8_4:26621491-26621510 | Msa1321250:CDS | 35.0% |
| GAAATTGTAGCAACAACCTA+AGG | - | chr8_4:26621538-26621557 | None:intergenic | 35.0% | |
| !!! | GTTTTGGGAAGTAATCTAGT+GGG | - | chr8_4:26621608-26621627 | None:intergenic | 35.0% |
| !!! | AGTTTTGGGAAGTAATCTAG+TGG | - | chr8_4:26621609-26621628 | None:intergenic | 35.0% |
| ! | ATTCAAGAGTCAGGAGTTTT+GGG | - | chr8_4:26621623-26621642 | None:intergenic | 35.0% |
| ! | AATTCAAGAGTCAGGAGTTT+TGG | - | chr8_4:26621624-26621643 | None:intergenic | 35.0% |
| ATTTGAAAATGCTCCAAGCT+AGG | - | chr8_4:26621768-26621787 | None:intergenic | 35.0% | |
| ATCTTCAGTTTAGTAAGCGT+TGG | - | chr8_4:26621843-26621862 | None:intergenic | 35.0% | |
| AAGAGGATAAGTAAGAGAGA+CGG | - | chr8_4:26622057-26622076 | None:intergenic | 35.0% | |
| GCACTAGATGACTTGAATAA+TGG | + | chr8_4:26622208-26622227 | Msa1321250:CDS | 35.0% | |
| AATTACCAATGATTCGAGAG+AGG | - | chr8_4:26621490-26621509 | None:intergenic | 35.0% | |
| ! | TCTCGAATCATTGGTAATTG+AGG | + | chr8_4:26621491-26621510 | Msa1321250:CDS | 35.0% |
| GAAATTGTAGCAACAACCTA+AGG | - | chr8_4:26621538-26621557 | None:intergenic | 35.0% | |
| !!! | GTTTTGGGAAGTAATCTAGT+GGG | - | chr8_4:26621608-26621627 | None:intergenic | 35.0% |
| !!! | AGTTTTGGGAAGTAATCTAG+TGG | - | chr8_4:26621609-26621628 | None:intergenic | 35.0% |
| ! | ATTCAAGAGTCAGGAGTTTT+GGG | - | chr8_4:26621623-26621642 | None:intergenic | 35.0% |
| ! | AATTCAAGAGTCAGGAGTTT+TGG | - | chr8_4:26621624-26621643 | None:intergenic | 35.0% |
| ATTTGAAAATGCTCCAAGCT+AGG | - | chr8_4:26621768-26621787 | None:intergenic | 35.0% | |
| ATCTTCAGTTTAGTAAGCGT+TGG | - | chr8_4:26621843-26621862 | None:intergenic | 35.0% | |
| AAGAGGATAAGTAAGAGAGA+CGG | - | chr8_4:26622057-26622076 | None:intergenic | 35.0% | |
| GCACTAGATGACTTGAATAA+TGG | + | chr8_4:26622208-26622227 | Msa1321250:CDS | 35.0% | |
| ! | TTCGAGAGAGGTATGAGATA+AGG | - | chr8_4:26621478-26621497 | None:intergenic | 40.0% |
| TCATACCTCTCTCGAATCAT+TGG | + | chr8_4:26621482-26621501 | Msa1321250:CDS | 40.0% | |
| TTTGTATCATTTCCCAAGGG+AGG | + | chr8_4:26621732-26621751 | Msa1321250:CDS | 40.0% | |
| ! | AAGAGAGTGTGCATACATTC+AGG | - | chr8_4:26621819-26621838 | None:intergenic | 40.0% |
| TTCATGCGTATAAGGCTTGA+TGG | - | chr8_4:26621909-26621928 | None:intergenic | 40.0% | |
| TGTGGAGTTTCATGCGTATA+AGG | - | chr8_4:26621917-26621936 | None:intergenic | 40.0% | |
| ! | TAAGAAGTTTGGAGCATGTG+TGG | - | chr8_4:26621935-26621954 | None:intergenic | 40.0% |
| !! | TAAAGAAGTGTTGATTCCCC+AGG | - | chr8_4:26621976-26621995 | None:intergenic | 40.0% |
| ! | TAGAGTCTTTTCCCGATGAA+GGG | + | chr8_4:26622024-26622043 | Msa1321250:CDS | 40.0% |
| AGAGGATAAGTAAGAGAGAC+GGG | - | chr8_4:26622056-26622075 | None:intergenic | 40.0% | |
| ! | TTCGAGAGAGGTATGAGATA+AGG | - | chr8_4:26621478-26621497 | None:intergenic | 40.0% |
| TCATACCTCTCTCGAATCAT+TGG | + | chr8_4:26621482-26621501 | Msa1321250:CDS | 40.0% | |
| TTTGTATCATTTCCCAAGGG+AGG | + | chr8_4:26621732-26621751 | Msa1321250:CDS | 40.0% | |
| ! | AAGAGAGTGTGCATACATTC+AGG | - | chr8_4:26621819-26621838 | None:intergenic | 40.0% |
| TTCATGCGTATAAGGCTTGA+TGG | - | chr8_4:26621909-26621928 | None:intergenic | 40.0% | |
| TGTGGAGTTTCATGCGTATA+AGG | - | chr8_4:26621917-26621936 | None:intergenic | 40.0% | |
| ! | TAAGAAGTTTGGAGCATGTG+TGG | - | chr8_4:26621935-26621954 | None:intergenic | 40.0% |
| !! | TAAAGAAGTGTTGATTCCCC+AGG | - | chr8_4:26621976-26621995 | None:intergenic | 40.0% |
| ! | TAGAGTCTTTTCCCGATGAA+GGG | + | chr8_4:26622024-26622043 | Msa1321250:CDS | 40.0% |
| AGAGGATAAGTAAGAGAGAC+GGG | - | chr8_4:26622056-26622075 | None:intergenic | 40.0% | |
| TGGGAAGTAATCTAGTGGGA+AGG | - | chr8_4:26621604-26621623 | None:intergenic | 45.0% | |
| ! | TCAGAGAACGACTCAAGTTG+TGG | - | chr8_4:26621876-26621895 | None:intergenic | 45.0% |
| CAACTTGAGTCGTTCTCTGA+TGG | + | chr8_4:26621876-26621895 | Msa1321250:CDS | 45.0% | |
| CAGTGAGGCGATAAGAAGTT+TGG | - | chr8_4:26621946-26621965 | None:intergenic | 45.0% | |
| ! | GTAGAGTCTTTTCCCGATGA+AGG | + | chr8_4:26622023-26622042 | Msa1321250:CDS | 45.0% |
| !! | ATGGTGAAGCTCTGAAGTTC+TGG | + | chr8_4:26622227-26622246 | Msa1321250:CDS | 45.0% |
| TGGGAAGTAATCTAGTGGGA+AGG | - | chr8_4:26621604-26621623 | None:intergenic | 45.0% | |
| ! | TCAGAGAACGACTCAAGTTG+TGG | - | chr8_4:26621876-26621895 | None:intergenic | 45.0% |
| CAACTTGAGTCGTTCTCTGA+TGG | + | chr8_4:26621876-26621895 | Msa1321250:CDS | 45.0% | |
| CAGTGAGGCGATAAGAAGTT+TGG | - | chr8_4:26621946-26621965 | None:intergenic | 45.0% | |
| ! | GTAGAGTCTTTTCCCGATGA+AGG | + | chr8_4:26622023-26622042 | Msa1321250:CDS | 45.0% |
| !! | ATGGTGAAGCTCTGAAGTTC+TGG | + | chr8_4:26622227-26622246 | Msa1321250:CDS | 45.0% |
| AGGATTCTCTGCACCTAGCT+TGG | + | chr8_4:26621752-26621771 | Msa1321250:CDS | 50.0% | |
| CTTGAGTCGTTCTCTGATGG+AGG | + | chr8_4:26621879-26621898 | Msa1321250:CDS | 50.0% | |
| TCGCCTCACTGAAATATGCC+TGG | + | chr8_4:26621955-26621974 | Msa1321250:CDS | 50.0% | |
| CGCCTCACTGAAATATGCCT+GGG | + | chr8_4:26621956-26621975 | Msa1321250:CDS | 50.0% | |
| GCCTCACTGAAATATGCCTG+GGG | + | chr8_4:26621957-26621976 | Msa1321250:CDS | 50.0% | |
| TCCCCAGGCATATTTCAGTG+AGG | - | chr8_4:26621961-26621980 | None:intergenic | 50.0% | |
| TTTAGTGTTCATGCTCGGCG+AGG | + | chr8_4:26622179-26622198 | Msa1321250:intron | 50.0% | |
| AGGATTCTCTGCACCTAGCT+TGG | + | chr8_4:26621752-26621771 | Msa1321250:CDS | 50.0% | |
| CTTGAGTCGTTCTCTGATGG+AGG | + | chr8_4:26621879-26621898 | Msa1321250:CDS | 50.0% | |
| TCGCCTCACTGAAATATGCC+TGG | + | chr8_4:26621955-26621974 | Msa1321250:CDS | 50.0% | |
| CGCCTCACTGAAATATGCCT+GGG | + | chr8_4:26621956-26621975 | Msa1321250:CDS | 50.0% | |
| GCCTCACTGAAATATGCCTG+GGG | + | chr8_4:26621957-26621976 | Msa1321250:CDS | 50.0% | |
| TCCCCAGGCATATTTCAGTG+AGG | - | chr8_4:26621961-26621980 | None:intergenic | 50.0% | |
| TTTAGTGTTCATGCTCGGCG+AGG | + | chr8_4:26622179-26622198 | Msa1321250:intron | 50.0% | |
| GGTGCAGAGAATCCTCCCTT+GGG | - | chr8_4:26621747-26621766 | None:intergenic | 55.0% | |
| AGGTGCAGAGAATCCTCCCT+TGG | - | chr8_4:26621748-26621767 | None:intergenic | 55.0% | |
| ACGGGAAGCAACCCTTCATC+GGG | - | chr8_4:26622038-26622057 | None:intergenic | 55.0% | |
| GACGGGAAGCAACCCTTCAT+CGG | - | chr8_4:26622039-26622058 | None:intergenic | 55.0% | |
| GGTGCAGAGAATCCTCCCTT+GGG | - | chr8_4:26621747-26621766 | None:intergenic | 55.0% | |
| AGGTGCAGAGAATCCTCCCT+TGG | - | chr8_4:26621748-26621767 | None:intergenic | 55.0% | |
| ACGGGAAGCAACCCTTCATC+GGG | - | chr8_4:26622038-26622057 | None:intergenic | 55.0% | |
| GACGGGAAGCAACCCTTCAT+CGG | - | chr8_4:26622039-26622058 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 26621453 | 26622255 | 26621453 | ID=Msa1321250;Name=Msa1321250 |
| chr8_4 | mRNA | 26621453 | 26622255 | 26621453 | ID=Msa1321250-mRNA-1;Parent=Msa1321250;Name=Msa1321250-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|0.5|1|1|2|0|224 |
| chr8_4 | exon | 26621453 | 26622055 | 26621453 | ID=Msa1321250-mRNA-1:exon:9086;Parent=Msa1321250-mRNA-1 |
| chr8_4 | exon | 26622184 | 26622255 | 26622184 | ID=Msa1321250-mRNA-1:exon:9087;Parent=Msa1321250-mRNA-1 |
| chr8_4 | CDS | 26621453 | 26622055 | 26621453 | ID=Msa1321250-mRNA-1:cds;Parent=Msa1321250-mRNA-1 |
| chr8_4 | CDS | 26622184 | 26622255 | 26622184 | ID=Msa1321250-mRNA-1:cds;Parent=Msa1321250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
