AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633070 MtrunA17_Chr4g0011241 97.845 232 5 0 1 232 1 232 2.30e-169 465
Msa0633070 MtrunA17_Chr5g0398711 52.119 236 102 5 1 232 51 279 8.39e-77 233
Msa0633070 MtrunA17_Chr4g0056901 53.782 238 89 8 1 231 1 224 3.33e-73 222
Msa0633070 MtrunA17_Chr5g0398721 51.261 238 101 6 1 232 4 232 3.90e-72 219
Msa0633070 MtrunA17_Chr7g0275631 30.000 230 147 7 5 231 3 221 8.47e-23 92.4
Msa0633070 MtrunA17_Chr6g0476521 29.310 232 136 8 5 231 4 212 2.74e-22 91.3
Msa0633070 MtrunA17_Chr1g0188241 30.544 239 123 11 5 231 4 211 3.08e-21 88.2
Msa0633070 MtrunA17_Chr6g0476511 28.879 232 135 9 5 231 4 210 1.20e-20 86.7
Msa0633070 MtrunA17_Chr4g0011081 28.571 231 134 10 5 231 4 207 1.20e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633070 AT2G45360.1 54.545 231 88 4 1 231 1 214 6.99e-78 234
Msa0633070 AT3G60780.1 52.155 232 95 4 1 231 1 217 1.11e-74 226
Msa0633070 AT1G62840.1 44.958 238 111 6 1 232 1 224 2.30e-56 179
Msa0633070 AT1G12320.1 44.872 234 101 7 1 230 1 210 1.47e-46 154

Find 65 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGTTTCTTGGTTTAAA+TGG 0.134381 4_3:+17785757 Msa0633070:CDS
ATAACATTCTACGATGAATT+TGG 0.250717 4_3:-17785427 None:intergenic
TATACATCATGAAGCTTGTT+TGG 0.316497 4_3:+17784733 None:intergenic
GGCAAAGGTCAAATGTTTCT+TGG 0.321382 4_3:+17785748 Msa0633070:CDS
TGCAATCTTGACCCTTCATC+TGG 0.322628 4_3:-17785531 None:intergenic
AGGCCAACACTTGCGGCTAT+TGG 0.324490 4_3:-17785462 None:intergenic
TTTGCCTGTTGGAAAGGGTT+TGG 0.337937 4_3:+17785824 Msa0633070:CDS
TTGTGGTGGATTGTAGGCTT+AGG 0.346252 4_3:+17785655 Msa0633070:CDS
GAGTACTAGAGGGGCAGTTT+TGG 0.356533 4_3:+17785710 Msa0633070:CDS
TGTGAGAAATTCAAGGAATC+TGG 0.377584 4_3:+17785363 Msa0633070:CDS
TGTGGTGGATTGTAGGCTTA+GGG 0.385593 4_3:+17785656 Msa0633070:CDS
ACGGTTATCAAAAGTCTTGA+TGG 0.406230 4_3:+17785621 Msa0633070:CDS
GGGATACACCCATCTCGGCT+AGG 0.414592 4_3:-17785566 None:intergenic
ATTACAGTGTGAGAAATTCA+AGG 0.434592 4_3:+17785356 Msa0633070:intron
AGTTCTCGGTGAAGCGCAAA+CGG 0.470434 4_3:+17785602 Msa0633070:CDS
GATGAATTTGGTGTTCCATC+CGG 0.471577 4_3:-17785415 None:intergenic
TATCAAAAGTCTTGATGGGT+TGG 0.476381 4_3:+17785626 Msa0633070:CDS
GGATACACCCATCTCGGCTA+GGG 0.478620 4_3:-17785565 None:intergenic
CACAAAAGCCCTAGCCGAGA+TGG 0.481827 4_3:+17785557 Msa0633070:CDS
ATATCCAAACCCTTTCCAAC+AGG 0.485251 4_3:-17785828 None:intergenic
AGCTTCAAGTAGTGCTTCAA+AGG 0.491703 4_3:+17785884 Msa0633070:CDS
TTGAGGTTGAAAGGTGCTTA+CGG 0.505934 4_3:-17784799 None:intergenic
ATTGATCTTACTTGTTGTTG+AGG 0.510185 4_3:-17784816 None:intergenic
CCGAGAACTATCTCCGGTGG+GGG 0.517771 4_3:-17785588 None:intergenic
GCAGTTGCTGCTCGCAACAC+CGG 0.530079 4_3:+17785486 Msa0633070:CDS
CGGTTATCAAAAGTCTTGAT+GGG 0.531055 4_3:+17785622 Msa0633070:CDS
AGGCACACGTGTGGTTAGAT+CGG 0.531174 4_3:+17785797 Msa0633070:CDS
TGGAACATGGTTCTTGAAAG+AGG 0.534421 4_3:+17785777 Msa0633070:CDS
TGTTGCGAGCAGCAACTGCT+AGG 0.534968 4_3:-17785482 None:intergenic
CACCGAGAACTATCTCCGGT+GGG 0.537897 4_3:-17785590 None:intergenic
GATCTATGAGTTTGATCCAA+CGG 0.544545 4_3:-17785917 None:intergenic
GGTTTGGATATTGCTTACAT+AGG 0.545757 4_3:+17785840 Msa0633070:CDS
TACTTGTTGTTGAGGTTGAA+AGG 0.550183 4_3:-17784808 None:intergenic
ACAAAAGCCCTAGCCGAGAT+GGG 0.552505 4_3:+17785558 Msa0633070:CDS
GGTGTTCCATCCGGCTGCCA+TGG 0.552686 4_3:-17785406 None:intergenic
GGTCCAATAGCCGCAAGTGT+TGG 0.554743 4_3:+17785459 Msa0633070:CDS
CTTCTATCATCCATGGCAGC+CGG 0.557426 4_3:+17785396 Msa0633070:CDS
ATCGTAGAATGTTATTCCCA+CGG 0.560998 4_3:+17785435 Msa0633070:CDS
GCTTACATAGGAAGTAGAAT+CGG 0.562095 4_3:+17785852 Msa0633070:CDS
GCAATCTTGACCCTTCATCT+GGG 0.562428 4_3:-17785530 None:intergenic
TATGCACACGTGTCTTGCAC+CGG 0.569145 4_3:-17785505 None:intergenic
GTGTGCATAGTCCCAGATGA+AGG 0.570105 4_3:+17785519 Msa0633070:CDS
CGAGAACTATCTCCGGTGGG+GGG 0.571171 4_3:-17785587 None:intergenic
TCACCGAGAACTATCTCCGG+TGG 0.572168 4_3:-17785591 None:intergenic
TAGGGTTCTTAAGGTTGCAA+AGG 0.574007 4_3:+17785686 Msa0633070:CDS
AGCTGAGCTTCTATCATCCA+TGG 0.578564 4_3:+17785389 Msa0633070:CDS
TATCATCCATGGCAGCCGGA+TGG 0.579782 4_3:+17785400 Msa0633070:CDS
CAAAGGGTACTCCTAGCCGT+TGG 0.589404 4_3:+17785901 Msa0633070:CDS
GCTTCAAGTAGTGCTTCAAA+GGG 0.589534 4_3:+17785885 Msa0633070:CDS
ACCGAGAACTATCTCCGGTG+GGG 0.589901 4_3:-17785589 None:intergenic
TTCTTGGTTTAAATGGAACA+TGG 0.590885 4_3:+17785764 Msa0633070:CDS
GTTGCAAAGGTGAGTACTAG+AGG 0.597632 4_3:+17785699 Msa0633070:CDS
AACTGCTAGGCCAACACTTG+CGG 0.598354 4_3:-17785469 None:intergenic
TTGCAAAGGTGAGTACTAGA+GGG 0.599847 4_3:+17785700 Msa0633070:CDS
GAGAACTATCTCCGGTGGGG+GGG 0.611049 4_3:-17785586 None:intergenic
TGCGGCTATTGGACCACCGT+GGG 0.614037 4_3:-17785451 None:intergenic
TGTGCATAGTCCCAGATGAA+GGG 0.619561 4_3:+17785520 Msa0633070:CDS
ATGAGTTTGATCCAACGGCT+AGG 0.623677 4_3:-17785912 None:intergenic
GCTTCACCGAGAACTATCTC+CGG 0.641092 4_3:-17785594 None:intergenic
TACATAGGAAGTAGAATCGG+TGG 0.650114 4_3:+17785855 Msa0633070:CDS
ATAGGAAGTAGAATCGGTGG+TGG 0.655026 4_3:+17785858 Msa0633070:CDS
TGCAAAGGTGAGTACTAGAG+GGG 0.660954 4_3:+17785701 Msa0633070:CDS
TCTTGAAAGAGGCACACGTG+TGG 0.689378 4_3:+17785788 Msa0633070:CDS
TTGCGGCTATTGGACCACCG+TGG 0.700893 4_3:-17785452 None:intergenic
GTAGAATGTTATTCCCACGG+TGG 0.800950 4_3:+17785438 Msa0633070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATGGTATTAATTATTT+TGG + chr4_3:17785326-17785345 Msa0633070:intron 10.0%
!!! TAATATGGTATTAATTATTT+TGG + chr4_3:17785326-17785345 Msa0633070:intron 10.0%
!! GAAAAAAAATTATACAAAGA+GGG - chr4_3:17785142-17785161 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG - chr4_3:17785143-17785162 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG - chr4_3:17785251-17785270 None:intergenic 15.0%
!!! AATTGATGATGTTTTTAATA+TGG + chr4_3:17785311-17785330 Msa0633070:intron 15.0%
!! GAAAAAAAATTATACAAAGA+GGG - chr4_3:17785142-17785161 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG - chr4_3:17785143-17785162 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG - chr4_3:17785251-17785270 None:intergenic 15.0%
!!! AATTGATGATGTTTTTAATA+TGG + chr4_3:17785311-17785330 Msa0633070:intron 15.0%
!! AATTAAGACAAATAACAACA+AGG - chr4_3:17785280-17785299 None:intergenic 20.0%
!! AATTAAGACAAATAACAACA+AGG - chr4_3:17785280-17785299 None:intergenic 20.0%
! ATAACATTCTACGATGAATT+TGG - chr4_3:17785430-17785449 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG + chr4_3:17785757-17785776 Msa0633070:CDS 25.0%
! AAACTCATAGATCAAAAATC+AGG + chr4_3:17785927-17785946 Msa0633070:CDS 25.0%
! ATAACATTCTACGATGAATT+TGG - chr4_3:17785430-17785449 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG + chr4_3:17785757-17785776 Msa0633070:CDS 25.0%
! AAACTCATAGATCAAAAATC+AGG + chr4_3:17785927-17785946 Msa0633070:CDS 25.0%
! AGTGTCTATGTAAGCTTTTA+AGG - chr4_3:17784772-17784791 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG - chr4_3:17784819-17784838 None:intergenic 30.0%
GGGAAAAGAAAATGGAAAAA+GGG - chr4_3:17785122-17785141 None:intergenic 30.0%
AGGGAAAAGAAAATGGAAAA+AGG - chr4_3:17785123-17785142 None:intergenic 30.0%
TACAAAGAGGGAAAAGAAAA+TGG - chr4_3:17785130-17785149 None:intergenic 30.0%
! CATATTTTGTGATGTGATTG+CGG - chr4_3:17785194-17785213 None:intergenic 30.0%
ATTACAGTGTGAGAAATTCA+AGG + chr4_3:17785356-17785375 Msa0633070:intron 30.0%
! TTTTGGCATGTAAAAATGCA+TGG + chr4_3:17785727-17785746 Msa0633070:CDS 30.0%
TTCTTGGTTTAAATGGAACA+TGG + chr4_3:17785764-17785783 Msa0633070:CDS 30.0%
! AGTGTCTATGTAAGCTTTTA+AGG - chr4_3:17784772-17784791 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG - chr4_3:17784819-17784838 None:intergenic 30.0%
GGGAAAAGAAAATGGAAAAA+GGG - chr4_3:17785122-17785141 None:intergenic 30.0%
AGGGAAAAGAAAATGGAAAA+AGG - chr4_3:17785123-17785142 None:intergenic 30.0%
TACAAAGAGGGAAAAGAAAA+TGG - chr4_3:17785130-17785149 None:intergenic 30.0%
! CATATTTTGTGATGTGATTG+CGG - chr4_3:17785194-17785213 None:intergenic 30.0%
ATTACAGTGTGAGAAATTCA+AGG + chr4_3:17785356-17785375 Msa0633070:intron 30.0%
! TTTTGGCATGTAAAAATGCA+TGG + chr4_3:17785727-17785746 Msa0633070:CDS 30.0%
TTCTTGGTTTAAATGGAACA+TGG + chr4_3:17785764-17785783 Msa0633070:CDS 30.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG - chr4_3:17784762-17784781 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG - chr4_3:17784811-17784830 None:intergenic 35.0%
ATAGACTCATGTGATTGAAG+GGG - chr4_3:17785040-17785059 None:intergenic 35.0%
CATAGACTCATGTGATTGAA+GGG - chr4_3:17785041-17785060 None:intergenic 35.0%
TCATAGACTCATGTGATTGA+AGG - chr4_3:17785042-17785061 None:intergenic 35.0%
CGCAATCACATCACAAAATA+TGG + chr4_3:17785192-17785211 Msa0633070:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG + chr4_3:17785363-17785382 Msa0633070:CDS 35.0%
ATCGTAGAATGTTATTCCCA+CGG + chr4_3:17785435-17785454 Msa0633070:CDS 35.0%
ACGGTTATCAAAAGTCTTGA+TGG + chr4_3:17785621-17785640 Msa0633070:CDS 35.0%
CGGTTATCAAAAGTCTTGAT+GGG + chr4_3:17785622-17785641 Msa0633070:CDS 35.0%
! TATCAAAAGTCTTGATGGGT+TGG + chr4_3:17785626-17785645 Msa0633070:CDS 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG + chr4_3:17785649-17785668 Msa0633070:CDS 35.0%
CATGTAAAAATGCATGGCAA+AGG + chr4_3:17785733-17785752 Msa0633070:CDS 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG + chr4_3:17785819-17785838 Msa0633070:CDS 35.0%
GGTTTGGATATTGCTTACAT+AGG + chr4_3:17785840-17785859 Msa0633070:CDS 35.0%
GCTTACATAGGAAGTAGAAT+CGG + chr4_3:17785852-17785871 Msa0633070:CDS 35.0%
GATCTATGAGTTTGATCCAA+CGG - chr4_3:17785920-17785939 None:intergenic 35.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG - chr4_3:17784762-17784781 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG - chr4_3:17784811-17784830 None:intergenic 35.0%
ATAGACTCATGTGATTGAAG+GGG - chr4_3:17785040-17785059 None:intergenic 35.0%
CATAGACTCATGTGATTGAA+GGG - chr4_3:17785041-17785060 None:intergenic 35.0%
TCATAGACTCATGTGATTGA+AGG - chr4_3:17785042-17785061 None:intergenic 35.0%
CGCAATCACATCACAAAATA+TGG + chr4_3:17785192-17785211 Msa0633070:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG + chr4_3:17785363-17785382 Msa0633070:CDS 35.0%
ATCGTAGAATGTTATTCCCA+CGG + chr4_3:17785435-17785454 Msa0633070:CDS 35.0%
ACGGTTATCAAAAGTCTTGA+TGG + chr4_3:17785621-17785640 Msa0633070:CDS 35.0%
CGGTTATCAAAAGTCTTGAT+GGG + chr4_3:17785622-17785641 Msa0633070:CDS 35.0%
! TATCAAAAGTCTTGATGGGT+TGG + chr4_3:17785626-17785645 Msa0633070:CDS 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG + chr4_3:17785649-17785668 Msa0633070:CDS 35.0%
CATGTAAAAATGCATGGCAA+AGG + chr4_3:17785733-17785752 Msa0633070:CDS 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG + chr4_3:17785819-17785838 Msa0633070:CDS 35.0%
GGTTTGGATATTGCTTACAT+AGG + chr4_3:17785840-17785859 Msa0633070:CDS 35.0%
GCTTACATAGGAAGTAGAAT+CGG + chr4_3:17785852-17785871 Msa0633070:CDS 35.0%
GATCTATGAGTTTGATCCAA+CGG - chr4_3:17785920-17785939 None:intergenic 35.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG - chr4_3:17784802-17784821 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG - chr4_3:17785418-17785437 None:intergenic 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG + chr4_3:17785638-17785657 Msa0633070:CDS 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG + chr4_3:17785668-17785687 Msa0633070:CDS 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG + chr4_3:17785677-17785696 Msa0633070:CDS 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG + chr4_3:17785686-17785705 Msa0633070:CDS 40.0%
TTGCAAAGGTGAGTACTAGA+GGG + chr4_3:17785700-17785719 Msa0633070:CDS 40.0%
GGCAAAGGTCAAATGTTTCT+TGG + chr4_3:17785748-17785767 Msa0633070:CDS 40.0%
TGGAACATGGTTCTTGAAAG+AGG + chr4_3:17785777-17785796 Msa0633070:CDS 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG + chr4_3:17785813-17785832 Msa0633070:CDS 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG + chr4_3:17785818-17785837 Msa0633070:CDS 40.0%
ATATCCAAACCCTTTCCAAC+AGG - chr4_3:17785831-17785850 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG + chr4_3:17785855-17785874 Msa0633070:CDS 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG + chr4_3:17785884-17785903 Msa0633070:CDS 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG + chr4_3:17785885-17785904 Msa0633070:CDS 40.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG - chr4_3:17784802-17784821 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG - chr4_3:17785418-17785437 None:intergenic 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG + chr4_3:17785638-17785657 Msa0633070:CDS 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG + chr4_3:17785668-17785687 Msa0633070:CDS 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG + chr4_3:17785677-17785696 Msa0633070:CDS 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG + chr4_3:17785686-17785705 Msa0633070:CDS 40.0%
TTGCAAAGGTGAGTACTAGA+GGG + chr4_3:17785700-17785719 Msa0633070:CDS 40.0%
GGCAAAGGTCAAATGTTTCT+TGG + chr4_3:17785748-17785767 Msa0633070:CDS 40.0%
TGGAACATGGTTCTTGAAAG+AGG + chr4_3:17785777-17785796 Msa0633070:CDS 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG + chr4_3:17785813-17785832 Msa0633070:CDS 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG + chr4_3:17785818-17785837 Msa0633070:CDS 40.0%
ATATCCAAACCCTTTCCAAC+AGG - chr4_3:17785831-17785850 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG + chr4_3:17785855-17785874 Msa0633070:CDS 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG + chr4_3:17785884-17785903 Msa0633070:CDS 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG + chr4_3:17785885-17785904 Msa0633070:CDS 40.0%
AGCTGAGCTTCTATCATCCA+TGG + chr4_3:17785389-17785408 Msa0633070:CDS 45.0%
GTAGAATGTTATTCCCACGG+TGG + chr4_3:17785438-17785457 Msa0633070:CDS 45.0%
TGTGCATAGTCCCAGATGAA+GGG + chr4_3:17785520-17785539 Msa0633070:CDS 45.0%
GCAATCTTGACCCTTCATCT+GGG - chr4_3:17785533-17785552 None:intergenic 45.0%
TGCAATCTTGACCCTTCATC+TGG - chr4_3:17785534-17785553 None:intergenic 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG + chr4_3:17785641-17785660 Msa0633070:CDS 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG + chr4_3:17785655-17785674 Msa0633070:CDS 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG + chr4_3:17785656-17785675 Msa0633070:CDS 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG + chr4_3:17785667-17785686 Msa0633070:CDS 45.0%
GTTGCAAAGGTGAGTACTAG+AGG + chr4_3:17785699-17785718 Msa0633070:CDS 45.0%
TGCAAAGGTGAGTACTAGAG+GGG + chr4_3:17785701-17785720 Msa0633070:CDS 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG + chr4_3:17785824-17785843 Msa0633070:CDS 45.0%
ATAGGAAGTAGAATCGGTGG+TGG + chr4_3:17785858-17785877 Msa0633070:CDS 45.0%
ATGAGTTTGATCCAACGGCT+AGG - chr4_3:17785915-17785934 None:intergenic 45.0%
AGCTGAGCTTCTATCATCCA+TGG + chr4_3:17785389-17785408 Msa0633070:CDS 45.0%
GTAGAATGTTATTCCCACGG+TGG + chr4_3:17785438-17785457 Msa0633070:CDS 45.0%
TGTGCATAGTCCCAGATGAA+GGG + chr4_3:17785520-17785539 Msa0633070:CDS 45.0%
GCAATCTTGACCCTTCATCT+GGG - chr4_3:17785533-17785552 None:intergenic 45.0%
TGCAATCTTGACCCTTCATC+TGG - chr4_3:17785534-17785553 None:intergenic 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG + chr4_3:17785641-17785660 Msa0633070:CDS 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG + chr4_3:17785655-17785674 Msa0633070:CDS 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG + chr4_3:17785656-17785675 Msa0633070:CDS 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG + chr4_3:17785667-17785686 Msa0633070:CDS 45.0%
GTTGCAAAGGTGAGTACTAG+AGG + chr4_3:17785699-17785718 Msa0633070:CDS 45.0%
TGCAAAGGTGAGTACTAGAG+GGG + chr4_3:17785701-17785720 Msa0633070:CDS 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG + chr4_3:17785824-17785843 Msa0633070:CDS 45.0%
ATAGGAAGTAGAATCGGTGG+TGG + chr4_3:17785858-17785877 Msa0633070:CDS 45.0%
ATGAGTTTGATCCAACGGCT+AGG - chr4_3:17785915-17785934 None:intergenic 45.0%
!! CAAAATAAAAATAAAAATAT+GGG - chr4_3:17784842-17784861 None:intergenic 5.0%
!! TCAAAATAAAAATAAAAATA+TGG - chr4_3:17784843-17784862 None:intergenic 5.0%
!!! TATATAATATTTTGAAATAT+TGG - chr4_3:17784914-17784933 None:intergenic 5.0%
!! CAAAATAAAAATAAAAATAT+GGG - chr4_3:17784842-17784861 None:intergenic 5.0%
!! TCAAAATAAAAATAAAAATA+TGG - chr4_3:17784843-17784862 None:intergenic 5.0%
!!! TATATAATATTTTGAAATAT+TGG - chr4_3:17784914-17784933 None:intergenic 5.0%
CTTCTATCATCCATGGCAGC+CGG + chr4_3:17785396-17785415 Msa0633070:CDS 50.0%
AACTGCTAGGCCAACACTTG+CGG - chr4_3:17785472-17785491 None:intergenic 50.0%
TATGCACACGTGTCTTGCAC+CGG - chr4_3:17785508-17785527 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG + chr4_3:17785519-17785538 Msa0633070:CDS 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG + chr4_3:17785558-17785577 Msa0633070:CDS 50.0%
GCTTCACCGAGAACTATCTC+CGG - chr4_3:17785597-17785616 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG + chr4_3:17785602-17785621 Msa0633070:CDS 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG + chr4_3:17785710-17785729 Msa0633070:CDS 50.0%
! TCTTGAAAGAGGCACACGTG+TGG + chr4_3:17785788-17785807 Msa0633070:CDS 50.0%
AGGCACACGTGTGGTTAGAT+CGG + chr4_3:17785797-17785816 Msa0633070:CDS 50.0%
CTTCTATCATCCATGGCAGC+CGG + chr4_3:17785396-17785415 Msa0633070:CDS 50.0%
AACTGCTAGGCCAACACTTG+CGG - chr4_3:17785472-17785491 None:intergenic 50.0%
TATGCACACGTGTCTTGCAC+CGG - chr4_3:17785508-17785527 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG + chr4_3:17785519-17785538 Msa0633070:CDS 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG + chr4_3:17785558-17785577 Msa0633070:CDS 50.0%
GCTTCACCGAGAACTATCTC+CGG - chr4_3:17785597-17785616 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG + chr4_3:17785602-17785621 Msa0633070:CDS 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG + chr4_3:17785710-17785729 Msa0633070:CDS 50.0%
! TCTTGAAAGAGGCACACGTG+TGG + chr4_3:17785788-17785807 Msa0633070:CDS 50.0%
AGGCACACGTGTGGTTAGAT+CGG + chr4_3:17785797-17785816 Msa0633070:CDS 50.0%
TATCATCCATGGCAGCCGGA+TGG + chr4_3:17785400-17785419 Msa0633070:CDS 55.0%
GGTCCAATAGCCGCAAGTGT+TGG + chr4_3:17785459-17785478 Msa0633070:CDS 55.0%
AGGCCAACACTTGCGGCTAT+TGG - chr4_3:17785465-17785484 None:intergenic 55.0%
TGTTGCGAGCAGCAACTGCT+AGG - chr4_3:17785485-17785504 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG + chr4_3:17785557-17785576 Msa0633070:CDS 55.0%
GGATACACCCATCTCGGCTA+GGG - chr4_3:17785568-17785587 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG - chr4_3:17785592-17785611 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG - chr4_3:17785593-17785612 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG - chr4_3:17785594-17785613 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG + chr4_3:17785901-17785920 Msa0633070:CDS 55.0%
TATCATCCATGGCAGCCGGA+TGG + chr4_3:17785400-17785419 Msa0633070:CDS 55.0%
GGTCCAATAGCCGCAAGTGT+TGG + chr4_3:17785459-17785478 Msa0633070:CDS 55.0%
AGGCCAACACTTGCGGCTAT+TGG - chr4_3:17785465-17785484 None:intergenic 55.0%
TGTTGCGAGCAGCAACTGCT+AGG - chr4_3:17785485-17785504 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG + chr4_3:17785557-17785576 Msa0633070:CDS 55.0%
GGATACACCCATCTCGGCTA+GGG - chr4_3:17785568-17785587 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG - chr4_3:17785592-17785611 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG - chr4_3:17785593-17785612 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG - chr4_3:17785594-17785613 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG + chr4_3:17785901-17785920 Msa0633070:CDS 55.0%
TGCGGCTATTGGACCACCGT+GGG - chr4_3:17785454-17785473 None:intergenic 60.0%
TTGCGGCTATTGGACCACCG+TGG - chr4_3:17785455-17785474 None:intergenic 60.0%
GCAGTTGCTGCTCGCAACAC+CGG + chr4_3:17785486-17785505 Msa0633070:CDS 60.0%
GGGATACACCCATCTCGGCT+AGG - chr4_3:17785569-17785588 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG - chr4_3:17785574-17785593 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG - chr4_3:17785589-17785608 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG - chr4_3:17785590-17785609 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG - chr4_3:17785591-17785610 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG + chr4_3:17785588-17785607 Msa0633070:CDS 60.0%
TGCGGCTATTGGACCACCGT+GGG - chr4_3:17785454-17785473 None:intergenic 60.0%
TTGCGGCTATTGGACCACCG+TGG - chr4_3:17785455-17785474 None:intergenic 60.0%
GCAGTTGCTGCTCGCAACAC+CGG + chr4_3:17785486-17785505 Msa0633070:CDS 60.0%
GGGATACACCCATCTCGGCT+AGG - chr4_3:17785569-17785588 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG - chr4_3:17785574-17785593 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG - chr4_3:17785589-17785608 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG - chr4_3:17785590-17785609 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG - chr4_3:17785591-17785610 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG + chr4_3:17785588-17785607 Msa0633070:CDS 60.0%
GGTGTTCCATCCGGCTGCCA+TGG - chr4_3:17785409-17785428 None:intergenic 65.0%
GATGGGTGTATCCCCCCCAC+CGG + chr4_3:17785575-17785594 Msa0633070:CDS 65.0%
GGTGTTCCATCCGGCTGCCA+TGG - chr4_3:17785409-17785428 None:intergenic 65.0%
GATGGGTGTATCCCCCCCAC+CGG + chr4_3:17785575-17785594 Msa0633070:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 17784741 17785974 17784741 ID=Msa0633070;Name=Msa0633070
chr4_3 mRNA 17784741 17785974 17784741 ID=Msa0633070-mRNA-1;Parent=Msa0633070;Name=Msa0633070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|232
chr4_3 exon 17784741 17784827 17784741 ID=Msa0633070-mRNA-1:exon:4972;Parent=Msa0633070-mRNA-1
chr4_3 exon 17785363 17785974 17785363 ID=Msa0633070-mRNA-1:exon:4973;Parent=Msa0633070-mRNA-1
chr4_3 CDS 17784741 17784827 17784741 ID=Msa0633070-mRNA-1:cds;Parent=Msa0633070-mRNA-1
chr4_3 CDS 17785363 17785974 17785363 ID=Msa0633070-mRNA-1:cds;Parent=Msa0633070-mRNA-1
Gene Sequence

>Msa0633070

ATGAAGCTTGTTTGGTCTCCAGAAACTGCCTTAAAAGCTTACATAGACACTGTTAAATCCGTAAGCACCTTTCAACCTCAACAACAATGTGAGAAATTCAAGGAATCTGGAGTAGCTGAGCTTCTATCATCCATGGCAGCCGGATGGAACACCAAATTCATCGTAGAATGTTATTCCCACGGTGGTCCAATAGCCGCAAGTGTTGGCCTAGCAGTTGCTGCTCGCAACACCGGTGCAAGACACGTGTGCATAGTCCCAGATGAAGGGTCAAGATTGCAATACACAAAAGCCCTAGCCGAGATGGGTGTATCCCCCCCACCGGAGATAGTTCTCGGTGAAGCGCAAACGGTTATCAAAAGTCTTGATGGGTTGGATTTTCTTGTGGTGGATTGTAGGCTTAGGGATTTTGCTAGGGTTCTTAAGGTTGCAAAGGTGAGTACTAGAGGGGCAGTTTTGGCATGTAAAAATGCATGGCAAAGGTCAAATGTTTCTTGGTTTAAATGGAACATGGTTCTTGAAAGAGGCACACGTGTGGTTAGATCGGTTTTTTTGCCTGTTGGAAAGGGTTTGGATATTGCTTACATAGGAAGTAGAATCGGTGGTGGTGCAGCTTCAAGTAGTGCTTCAAAGGGTACTCCTAGCCGTTGGATCAAACTCATAGATCAAAAATCAGGAGAAGAACATCTCTATAGAGAGTGA

Protein sequence

>Msa0633070

MKLVWSPETALKAYIDTVKSVSTFQPQQQCEKFKESGVAELLSSMAAGWNTKFIVECYSHGGPIAASVGLAVAARNTGARHVCIVPDEGSRLQYTKALAEMGVSPPPEIVLGEAQTVIKSLDGLDFLVVDCRLRDFARVLKVAKVSTRGAVLACKNAWQRSNVSWFKWNMVLERGTRVVRSVFLPVGKGLDIAYIGSRIGGGAASSSASKGTPSRWIKLIDQKSGEEHLYRE*