AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0529420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529420 MtrunA17_Chr4g0011241 97.845 232 5 0 1 232 1 232 2.30e-169 465
Msa0529420 MtrunA17_Chr5g0398711 52.119 236 102 5 1 232 51 279 8.39e-77 233
Msa0529420 MtrunA17_Chr4g0056901 53.782 238 89 8 1 231 1 224 3.33e-73 222
Msa0529420 MtrunA17_Chr5g0398721 51.261 238 101 6 1 232 4 232 3.90e-72 219
Msa0529420 MtrunA17_Chr7g0275631 30.000 230 147 7 5 231 3 221 8.47e-23 92.4
Msa0529420 MtrunA17_Chr6g0476521 29.310 232 136 8 5 231 4 212 2.74e-22 91.3
Msa0529420 MtrunA17_Chr1g0188241 30.544 239 123 11 5 231 4 211 3.08e-21 88.2
Msa0529420 MtrunA17_Chr6g0476511 28.879 232 135 9 5 231 4 210 1.20e-20 86.7
Msa0529420 MtrunA17_Chr4g0011081 28.571 231 134 10 5 231 4 207 1.20e-18 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0529420 AT2G45360.1 54.545 231 88 4 1 231 1 214 6.99e-78 234
Msa0529420 AT3G60780.1 52.155 232 95 4 1 231 1 217 1.11e-74 226
Msa0529420 AT1G62840.1 44.958 238 111 6 1 232 1 224 2.30e-56 179
Msa0529420 AT1G12320.1 44.872 234 101 7 1 230 1 210 1.47e-46 154

Find 66 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATGTTTCTTGGTTTAAA+TGG 0.134381 4_1:-2952956 Msa0529420:CDS
ATAACATTCTACGATGAATT+TGG 0.250717 4_1:+2953286 None:intergenic
TATACATCATGAAGCTTGTT+TGG 0.316497 4_1:-2954048 None:intergenic
GGCAAAGGTCAAATGTTTCT+TGG 0.321382 4_1:-2952965 Msa0529420:CDS
TGCAATCTTGACCCTTCATC+TGG 0.322628 4_1:+2953182 None:intergenic
AGGCCAACACTTGCGGCTAT+TGG 0.324490 4_1:+2953251 None:intergenic
TTTGCCTGTTGGAAAGGGTT+TGG 0.337937 4_1:-2952889 Msa0529420:CDS
TTGTGGTGGATTGTAGGCTT+AGG 0.346252 4_1:-2953058 Msa0529420:CDS
GAGTACTAGAGGGGCAGTTT+TGG 0.356533 4_1:-2953003 Msa0529420:CDS
TGTGGTGGATTGTAGGCTTA+GGG 0.385593 4_1:-2953057 Msa0529420:CDS
TGTGAGAAATTCAAGGAATC+TGG 0.400122 4_1:-2953350 Msa0529420:CDS
GGGATACACCCATCTCGGCT+AGG 0.414592 4_1:+2953147 None:intergenic
ACGGTGATCAAAAGTCTTGA+TGG 0.439976 4_1:-2953092 Msa0529420:CDS
ATTGCAGTGTGAGAAATTCA+AGG 0.454346 4_1:-2953357 Msa0529420:intron
AGTTCTCGGTGAAGCGCAAA+CGG 0.470434 4_1:-2953111 Msa0529420:CDS
GATGAATTTGGTGTTCCATC+CGG 0.471577 4_1:+2953298 None:intergenic
GGATACACCCATCTCGGCTA+GGG 0.478620 4_1:+2953148 None:intergenic
CACAAAAGCCCTAGCCGAGA+TGG 0.481827 4_1:-2953156 Msa0529420:CDS
ATATCCAAACCCTTTCCAAC+AGG 0.485251 4_1:+2952885 None:intergenic
AGCTTCAAGTAGTGCTTCAA+AGG 0.491703 4_1:-2952829 Msa0529420:CDS
TTGAGGTTGAAAGGTGCTTA+CGG 0.505934 4_1:+2953982 None:intergenic
ATTGATCTTACTTGTTGTTG+AGG 0.510185 4_1:+2953965 None:intergenic
GATCAAAAGTCTTGATGGGT+TGG 0.514141 4_1:-2953087 Msa0529420:CDS
CCGAGAACTATCTCCGGTGG+GGG 0.517771 4_1:+2953125 None:intergenic
GCGGTTGCTGCTCGCAACAC+CGG 0.525122 4_1:-2953227 Msa0529420:CDS
AGGCACACGTGTGGTTAGAT+CGG 0.531174 4_1:-2952916 Msa0529420:CDS
TGGAACATGGTTCTTGAAAG+AGG 0.534421 4_1:-2952936 Msa0529420:CDS
TGTTGCGAGCAGCAACCGCT+AGG 0.535059 4_1:+2953231 None:intergenic
CACCGAGAACTATCTCCGGT+GGG 0.537897 4_1:+2953123 None:intergenic
GATCTATGAGTTTGATCCAA+CGG 0.544545 4_1:+2952796 None:intergenic
GGTTTGGATATTGCTTACAT+AGG 0.545757 4_1:-2952873 Msa0529420:CDS
TACTTGTTGTTGAGGTTGAA+AGG 0.550183 4_1:+2953973 None:intergenic
ACAAAAGCCCTAGCCGAGAT+GGG 0.552505 4_1:-2953155 Msa0529420:CDS
GGTGTTCCATCCGGCTGCCA+TGG 0.552686 4_1:+2953307 None:intergenic
CGGTGATCAAAAGTCTTGAT+GGG 0.555108 4_1:-2953091 Msa0529420:CDS
CTTCTATCATCCATGGCAGC+CGG 0.557426 4_1:-2953317 Msa0529420:CDS
GCTTACATAGGAAGTAGAAT+CGG 0.562095 4_1:-2952861 Msa0529420:CDS
GCAATCTTGACCCTTCATCT+GGG 0.562428 4_1:+2953183 None:intergenic
ATCGTAGAATGTTATTCCCA+CGG 0.567348 4_1:-2953278 Msa0529420:CDS
TATGCACACGTGTCTTGCAC+CGG 0.569145 4_1:+2953208 None:intergenic
GTGTGCATAGTCCCAGATGA+AGG 0.570105 4_1:-2953194 Msa0529420:CDS
CGAGAACTATCTCCGGTGGG+GGG 0.571171 4_1:+2953126 None:intergenic
TCACCGAGAACTATCTCCGG+TGG 0.572168 4_1:+2953122 None:intergenic
AACCGCTAGGCCAACACTTG+CGG 0.573043 4_1:+2953244 None:intergenic
TAGGGTTCTTAAGGTTGCAA+AGG 0.574007 4_1:-2953027 Msa0529420:CDS
GGTCCAATAGCCGCAAGTGT+TGG 0.576902 4_1:-2953254 Msa0529420:CDS
AGCTGAGCTTCTATCATCCA+TGG 0.578564 4_1:-2953324 Msa0529420:CDS
TATCATCCATGGCAGCCGGA+TGG 0.579782 4_1:-2953313 Msa0529420:CDS
TGCGGCTATTGGACCGCCGT+GGG 0.584383 4_1:+2953262 None:intergenic
CAAAGGGTACTCCTAGCCGT+TGG 0.589404 4_1:-2952812 Msa0529420:CDS
GCTTCAAGTAGTGCTTCAAA+GGG 0.589534 4_1:-2952828 Msa0529420:CDS
ACCGAGAACTATCTCCGGTG+GGG 0.589901 4_1:+2953124 None:intergenic
TTCTTGGTTTAAATGGAACA+TGG 0.590885 4_1:-2952949 Msa0529420:CDS
GTTGCAAAGGTGAGTACTAG+AGG 0.597632 4_1:-2953014 Msa0529420:CDS
TTGCAAAGGTGAGTACTAGA+GGG 0.599847 4_1:-2953013 Msa0529420:CDS
GAGAACTATCTCCGGTGGGG+GGG 0.611049 4_1:+2953127 None:intergenic
TTGCGGCTATTGGACCGCCG+TGG 0.612852 4_1:+2953261 None:intergenic
TGTGCATAGTCCCAGATGAA+GGG 0.619561 4_1:-2953193 Msa0529420:CDS
ATGAGTTTGATCCAACGGCT+AGG 0.623677 4_1:+2952801 None:intergenic
AGCCGCAAGTGTTGGCCTAG+CGG 0.628784 4_1:-2953246 Msa0529420:CDS
GCTTCACCGAGAACTATCTC+CGG 0.641092 4_1:+2953119 None:intergenic
TACATAGGAAGTAGAATCGG+TGG 0.650114 4_1:-2952858 Msa0529420:CDS
ATAGGAAGTAGAATCGGTGG+TGG 0.655026 4_1:-2952855 Msa0529420:CDS
TGCAAAGGTGAGTACTAGAG+GGG 0.660954 4_1:-2953012 Msa0529420:CDS
TCTTGAAAGAGGCACACGTG+TGG 0.689378 4_1:-2952925 Msa0529420:CDS
GTAGAATGTTATTCCCACGG+CGG 0.814857 4_1:-2953275 Msa0529420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATATGGTATTAATTATT+TGG - chr4_1:2953413-2953432 Msa0529420:intron 10.0%
!! TAATATGGTATTAATTATTT+GGG - chr4_1:2953414-2953433 Msa0529420:intron 10.0%
!! TTAATATGGTATTAATTATT+TGG - chr4_1:2953413-2953432 Msa0529420:intron 10.0%
!! TAATATGGTATTAATTATTT+GGG - chr4_1:2953414-2953433 Msa0529420:intron 10.0%
!! ACTAAAATTGAAAAAAGAAA+GGG + chr4_1:2952941-2952960 None:intergenic 15.0%
!! AACTAAAATTGAAAAAAGAA+AGG + chr4_1:2952942-2952961 None:intergenic 15.0%
!! AAGAAAAAATATTACAAAGA+GGG + chr4_1:2952966-2952985 None:intergenic 15.0%
!! AAAGAAAAAATATTACAAAG+AGG + chr4_1:2952967-2952986 None:intergenic 15.0%
!! GAAAAAAAATTATACAAAGA+GGG + chr4_1:2953241-2953260 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG + chr4_1:2953242-2953261 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG + chr4_1:2953350-2953369 None:intergenic 15.0%
!!! AAATTGATGATGTTTTAATA+TGG - chr4_1:2953399-2953418 Msa0529420:intron 15.0%
!! ACTAAAATTGAAAAAAGAAA+GGG + chr4_1:2952941-2952960 None:intergenic 15.0%
!! AACTAAAATTGAAAAAAGAA+AGG + chr4_1:2952942-2952961 None:intergenic 15.0%
!! AAGAAAAAATATTACAAAGA+GGG + chr4_1:2952966-2952985 None:intergenic 15.0%
!! AAAGAAAAAATATTACAAAG+AGG + chr4_1:2952967-2952986 None:intergenic 15.0%
!! GAAAAAAAATTATACAAAGA+GGG + chr4_1:2953241-2953260 None:intergenic 15.0%
!! AGAAAAAAAATTATACAAAG+AGG + chr4_1:2953242-2953261 None:intergenic 15.0%
!! TAGTGATTATAATTTATTCT+TGG + chr4_1:2953350-2953369 None:intergenic 15.0%
!!! AAATTGATGATGTTTTAATA+TGG - chr4_1:2953399-2953418 Msa0529420:intron 15.0%
!!! TTTTAAGACAAATAACAACA+AGG + chr4_1:2953379-2953398 None:intergenic 20.0%
!!! TTTTAAGACAAATAACAACA+AGG + chr4_1:2953379-2953398 None:intergenic 20.0%
! ATAACATTCTACGATGAATT+TGG + chr4_1:2953518-2953537 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG - chr4_1:2953845-2953864 Msa0529420:intron 25.0%
! AAACTCATAGATCAAAAATC+AGG - chr4_1:2954015-2954034 Msa0529420:CDS 25.0%
! ATAACATTCTACGATGAATT+TGG + chr4_1:2953518-2953537 None:intergenic 25.0%
! CAAATGTTTCTTGGTTTAAA+TGG - chr4_1:2953845-2953864 Msa0529420:intron 25.0%
! AAACTCATAGATCAAAAATC+AGG - chr4_1:2954015-2954034 Msa0529420:CDS 25.0%
! AGTGTCTATGTAAGCTTTTA+AGG + chr4_1:2952792-2952811 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG + chr4_1:2952839-2952858 None:intergenic 30.0%
GTAAACTTATGTGATTGAAG+GGG + chr4_1:2953118-2953137 None:intergenic 30.0%
CGTAAACTTATGTGATTGAA+GGG + chr4_1:2953119-2953138 None:intergenic 30.0%
ACGTAAACTTATGTGATTGA+AGG + chr4_1:2953120-2953139 None:intergenic 30.0%
TACAAAGAGGGAAATGAAAA+TGG + chr4_1:2953229-2953248 None:intergenic 30.0%
CATATTATGTGATGTGATTG+CGG + chr4_1:2953293-2953312 None:intergenic 30.0%
! TTTTGGCATGTAAAAATGCA+TGG - chr4_1:2953815-2953834 Msa0529420:intron 30.0%
TTCTTGGTTTAAATGGAACA+TGG - chr4_1:2953852-2953871 Msa0529420:intron 30.0%
! AGTGTCTATGTAAGCTTTTA+AGG + chr4_1:2952792-2952811 None:intergenic 30.0%
!! ATTGATCTTACTTGTTGTTG+AGG + chr4_1:2952839-2952858 None:intergenic 30.0%
GTAAACTTATGTGATTGAAG+GGG + chr4_1:2953118-2953137 None:intergenic 30.0%
CGTAAACTTATGTGATTGAA+GGG + chr4_1:2953119-2953138 None:intergenic 30.0%
ACGTAAACTTATGTGATTGA+AGG + chr4_1:2953120-2953139 None:intergenic 30.0%
TACAAAGAGGGAAATGAAAA+TGG + chr4_1:2953229-2953248 None:intergenic 30.0%
CATATTATGTGATGTGATTG+CGG + chr4_1:2953293-2953312 None:intergenic 30.0%
! TTTTGGCATGTAAAAATGCA+TGG - chr4_1:2953815-2953834 Msa0529420:intron 30.0%
TTCTTGGTTTAAATGGAACA+TGG - chr4_1:2953852-2953871 Msa0529420:intron 30.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG + chr4_1:2952782-2952801 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG + chr4_1:2952831-2952850 None:intergenic 35.0%
AAGGGACAAAGAAAGAAGAA+GGG + chr4_1:2952923-2952942 None:intergenic 35.0%
AAAGGGACAAAGAAAGAAGA+AGG + chr4_1:2952924-2952943 None:intergenic 35.0%
GGGAAATGAAAATGGAAAAG+TGG + chr4_1:2953221-2953240 None:intergenic 35.0%
CGCAATCACATCACATAATA+TGG - chr4_1:2953291-2953310 Msa0529420:CDS 35.0%
ATTGCAGTGTGAGAAATTCA+AGG - chr4_1:2953444-2953463 Msa0529420:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG - chr4_1:2953451-2953470 Msa0529420:intron 35.0%
ATCGTAGAATGTTATTCCCA+CGG - chr4_1:2953523-2953542 Msa0529420:intron 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG - chr4_1:2953737-2953756 Msa0529420:intron 35.0%
CATGTAAAAATGCATGGCAA+AGG - chr4_1:2953821-2953840 Msa0529420:intron 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG - chr4_1:2953907-2953926 Msa0529420:intron 35.0%
GGTTTGGATATTGCTTACAT+AGG - chr4_1:2953928-2953947 Msa0529420:intron 35.0%
GCTTACATAGGAAGTAGAAT+CGG - chr4_1:2953940-2953959 Msa0529420:intron 35.0%
GATCTATGAGTTTGATCCAA+CGG + chr4_1:2954008-2954027 None:intergenic 35.0%
!!! TAAGCTTTTAAGGCAGTTTC+TGG + chr4_1:2952782-2952801 None:intergenic 35.0%
!! TACTTGTTGTTGAGGTTGAA+AGG + chr4_1:2952831-2952850 None:intergenic 35.0%
AAGGGACAAAGAAAGAAGAA+GGG + chr4_1:2952923-2952942 None:intergenic 35.0%
AAAGGGACAAAGAAAGAAGA+AGG + chr4_1:2952924-2952943 None:intergenic 35.0%
GGGAAATGAAAATGGAAAAG+TGG + chr4_1:2953221-2953240 None:intergenic 35.0%
CGCAATCACATCACATAATA+TGG - chr4_1:2953291-2953310 Msa0529420:CDS 35.0%
ATTGCAGTGTGAGAAATTCA+AGG - chr4_1:2953444-2953463 Msa0529420:intron 35.0%
TGTGAGAAATTCAAGGAATC+TGG - chr4_1:2953451-2953470 Msa0529420:intron 35.0%
ATCGTAGAATGTTATTCCCA+CGG - chr4_1:2953523-2953542 Msa0529420:intron 35.0%
!!! ATTTTCTTGTGGTGGATTGT+AGG - chr4_1:2953737-2953756 Msa0529420:intron 35.0%
CATGTAAAAATGCATGGCAA+AGG - chr4_1:2953821-2953840 Msa0529420:intron 35.0%
!!! GTTTTTTTGCCTGTTGGAAA+GGG - chr4_1:2953907-2953926 Msa0529420:intron 35.0%
GGTTTGGATATTGCTTACAT+AGG - chr4_1:2953928-2953947 Msa0529420:intron 35.0%
GCTTACATAGGAAGTAGAAT+CGG - chr4_1:2953940-2953959 Msa0529420:intron 35.0%
GATCTATGAGTTTGATCCAA+CGG + chr4_1:2954008-2954027 None:intergenic 35.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG + chr4_1:2952822-2952841 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG + chr4_1:2953506-2953525 None:intergenic 40.0%
ACGGTGATCAAAAGTCTTGA+TGG - chr4_1:2953709-2953728 Msa0529420:intron 40.0%
CGGTGATCAAAAGTCTTGAT+GGG - chr4_1:2953710-2953729 Msa0529420:intron 40.0%
! GATCAAAAGTCTTGATGGGT+TGG - chr4_1:2953714-2953733 Msa0529420:intron 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG - chr4_1:2953726-2953745 Msa0529420:intron 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG - chr4_1:2953756-2953775 Msa0529420:intron 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG - chr4_1:2953765-2953784 Msa0529420:intron 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG - chr4_1:2953774-2953793 Msa0529420:intron 40.0%
TTGCAAAGGTGAGTACTAGA+GGG - chr4_1:2953788-2953807 Msa0529420:intron 40.0%
GGCAAAGGTCAAATGTTTCT+TGG - chr4_1:2953836-2953855 Msa0529420:intron 40.0%
TGGAACATGGTTCTTGAAAG+AGG - chr4_1:2953865-2953884 Msa0529420:intron 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG - chr4_1:2953901-2953920 Msa0529420:intron 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG - chr4_1:2953906-2953925 Msa0529420:intron 40.0%
ATATCCAAACCCTTTCCAAC+AGG + chr4_1:2953919-2953938 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG - chr4_1:2953943-2953962 Msa0529420:intron 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG - chr4_1:2953972-2953991 Msa0529420:intron 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG - chr4_1:2953973-2953992 Msa0529420:intron 40.0%
!! TTGAGGTTGAAAGGTGCTTA+CGG + chr4_1:2952822-2952841 None:intergenic 40.0%
!! GATGAATTTGGTGTTCCATC+CGG + chr4_1:2953506-2953525 None:intergenic 40.0%
ACGGTGATCAAAAGTCTTGA+TGG - chr4_1:2953709-2953728 Msa0529420:intron 40.0%
CGGTGATCAAAAGTCTTGAT+GGG - chr4_1:2953710-2953729 Msa0529420:intron 40.0%
! GATCAAAAGTCTTGATGGGT+TGG - chr4_1:2953714-2953733 Msa0529420:intron 40.0%
!!! TGATGGGTTGGATTTTCTTG+TGG - chr4_1:2953726-2953745 Msa0529420:intron 40.0%
! TAGGCTTAGGGATTTTGCTA+GGG - chr4_1:2953756-2953775 Msa0529420:intron 40.0%
! GGATTTTGCTAGGGTTCTTA+AGG - chr4_1:2953765-2953784 Msa0529420:intron 40.0%
TAGGGTTCTTAAGGTTGCAA+AGG - chr4_1:2953774-2953793 Msa0529420:intron 40.0%
TTGCAAAGGTGAGTACTAGA+GGG - chr4_1:2953788-2953807 Msa0529420:intron 40.0%
GGCAAAGGTCAAATGTTTCT+TGG - chr4_1:2953836-2953855 Msa0529420:intron 40.0%
TGGAACATGGTTCTTGAAAG+AGG - chr4_1:2953865-2953884 Msa0529420:intron 40.0%
!!! AGATCGGTTTTTTTGCCTGT+TGG - chr4_1:2953901-2953920 Msa0529420:intron 40.0%
!!! GGTTTTTTTGCCTGTTGGAA+AGG - chr4_1:2953906-2953925 Msa0529420:intron 40.0%
ATATCCAAACCCTTTCCAAC+AGG + chr4_1:2953919-2953938 None:intergenic 40.0%
TACATAGGAAGTAGAATCGG+TGG - chr4_1:2953943-2953962 Msa0529420:intron 40.0%
AGCTTCAAGTAGTGCTTCAA+AGG - chr4_1:2953972-2953991 Msa0529420:intron 40.0%
GCTTCAAGTAGTGCTTCAAA+GGG - chr4_1:2953973-2953992 Msa0529420:intron 40.0%
AGCTGAGCTTCTATCATCCA+TGG - chr4_1:2953477-2953496 Msa0529420:intron 45.0%
GTAGAATGTTATTCCCACGG+CGG - chr4_1:2953526-2953545 Msa0529420:intron 45.0%
TGTGCATAGTCCCAGATGAA+GGG - chr4_1:2953608-2953627 Msa0529420:intron 45.0%
GCAATCTTGACCCTTCATCT+GGG + chr4_1:2953621-2953640 None:intergenic 45.0%
TGCAATCTTGACCCTTCATC+TGG + chr4_1:2953622-2953641 None:intergenic 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG - chr4_1:2953729-2953748 Msa0529420:intron 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG - chr4_1:2953743-2953762 Msa0529420:intron 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG - chr4_1:2953744-2953763 Msa0529420:intron 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG - chr4_1:2953755-2953774 Msa0529420:intron 45.0%
GTTGCAAAGGTGAGTACTAG+AGG - chr4_1:2953787-2953806 Msa0529420:intron 45.0%
TGCAAAGGTGAGTACTAGAG+GGG - chr4_1:2953789-2953808 Msa0529420:intron 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG - chr4_1:2953912-2953931 Msa0529420:intron 45.0%
ATAGGAAGTAGAATCGGTGG+TGG - chr4_1:2953946-2953965 Msa0529420:intron 45.0%
ATGAGTTTGATCCAACGGCT+AGG + chr4_1:2954003-2954022 None:intergenic 45.0%
AGCTGAGCTTCTATCATCCA+TGG - chr4_1:2953477-2953496 Msa0529420:intron 45.0%
GTAGAATGTTATTCCCACGG+CGG - chr4_1:2953526-2953545 Msa0529420:intron 45.0%
TGTGCATAGTCCCAGATGAA+GGG - chr4_1:2953608-2953627 Msa0529420:intron 45.0%
GCAATCTTGACCCTTCATCT+GGG + chr4_1:2953621-2953640 None:intergenic 45.0%
TGCAATCTTGACCCTTCATC+TGG + chr4_1:2953622-2953641 None:intergenic 45.0%
!! TGGGTTGGATTTTCTTGTGG+TGG - chr4_1:2953729-2953748 Msa0529420:intron 45.0%
!! TTGTGGTGGATTGTAGGCTT+AGG - chr4_1:2953743-2953762 Msa0529420:intron 45.0%
!! TGTGGTGGATTGTAGGCTTA+GGG - chr4_1:2953744-2953763 Msa0529420:intron 45.0%
! GTAGGCTTAGGGATTTTGCT+AGG - chr4_1:2953755-2953774 Msa0529420:intron 45.0%
GTTGCAAAGGTGAGTACTAG+AGG - chr4_1:2953787-2953806 Msa0529420:intron 45.0%
TGCAAAGGTGAGTACTAGAG+GGG - chr4_1:2953789-2953808 Msa0529420:intron 45.0%
TTTGCCTGTTGGAAAGGGTT+TGG - chr4_1:2953912-2953931 Msa0529420:intron 45.0%
ATAGGAAGTAGAATCGGTGG+TGG - chr4_1:2953946-2953965 Msa0529420:intron 45.0%
ATGAGTTTGATCCAACGGCT+AGG + chr4_1:2954003-2954022 None:intergenic 45.0%
!! ATAATATATATTTGAAAAAT+TGG + chr4_1:2952996-2953015 None:intergenic 5.0%
!! ATAATATATATTTGAAAAAT+TGG + chr4_1:2952996-2953015 None:intergenic 5.0%
CTTCTATCATCCATGGCAGC+CGG - chr4_1:2953484-2953503 Msa0529420:intron 50.0%
TATGCACACGTGTCTTGCAC+CGG + chr4_1:2953596-2953615 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG - chr4_1:2953607-2953626 Msa0529420:intron 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG - chr4_1:2953646-2953665 Msa0529420:intron 50.0%
GCTTCACCGAGAACTATCTC+CGG + chr4_1:2953685-2953704 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG - chr4_1:2953690-2953709 Msa0529420:intron 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG - chr4_1:2953798-2953817 Msa0529420:intron 50.0%
! TCTTGAAAGAGGCACACGTG+TGG - chr4_1:2953876-2953895 Msa0529420:intron 50.0%
AGGCACACGTGTGGTTAGAT+CGG - chr4_1:2953885-2953904 Msa0529420:intron 50.0%
CTTCTATCATCCATGGCAGC+CGG - chr4_1:2953484-2953503 Msa0529420:intron 50.0%
TATGCACACGTGTCTTGCAC+CGG + chr4_1:2953596-2953615 None:intergenic 50.0%
GTGTGCATAGTCCCAGATGA+AGG - chr4_1:2953607-2953626 Msa0529420:intron 50.0%
ACAAAAGCCCTAGCCGAGAT+GGG - chr4_1:2953646-2953665 Msa0529420:intron 50.0%
GCTTCACCGAGAACTATCTC+CGG + chr4_1:2953685-2953704 None:intergenic 50.0%
AGTTCTCGGTGAAGCGCAAA+CGG - chr4_1:2953690-2953709 Msa0529420:intron 50.0%
! GAGTACTAGAGGGGCAGTTT+TGG - chr4_1:2953798-2953817 Msa0529420:intron 50.0%
! TCTTGAAAGAGGCACACGTG+TGG - chr4_1:2953876-2953895 Msa0529420:intron 50.0%
AGGCACACGTGTGGTTAGAT+CGG - chr4_1:2953885-2953904 Msa0529420:intron 50.0%
TATCATCCATGGCAGCCGGA+TGG - chr4_1:2953488-2953507 Msa0529420:intron 55.0%
GGTCCAATAGCCGCAAGTGT+TGG - chr4_1:2953547-2953566 Msa0529420:intron 55.0%
AGGCCAACACTTGCGGCTAT+TGG + chr4_1:2953553-2953572 None:intergenic 55.0%
AACCGCTAGGCCAACACTTG+CGG + chr4_1:2953560-2953579 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG - chr4_1:2953645-2953664 Msa0529420:intron 55.0%
GGATACACCCATCTCGGCTA+GGG + chr4_1:2953656-2953675 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG + chr4_1:2953680-2953699 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG + chr4_1:2953681-2953700 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG + chr4_1:2953682-2953701 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG - chr4_1:2953989-2954008 Msa0529420:CDS 55.0%
TATCATCCATGGCAGCCGGA+TGG - chr4_1:2953488-2953507 Msa0529420:intron 55.0%
GGTCCAATAGCCGCAAGTGT+TGG - chr4_1:2953547-2953566 Msa0529420:intron 55.0%
AGGCCAACACTTGCGGCTAT+TGG + chr4_1:2953553-2953572 None:intergenic 55.0%
AACCGCTAGGCCAACACTTG+CGG + chr4_1:2953560-2953579 None:intergenic 55.0%
CACAAAAGCCCTAGCCGAGA+TGG - chr4_1:2953645-2953664 Msa0529420:intron 55.0%
GGATACACCCATCTCGGCTA+GGG + chr4_1:2953656-2953675 None:intergenic 55.0%
ACCGAGAACTATCTCCGGTG+GGG + chr4_1:2953680-2953699 None:intergenic 55.0%
CACCGAGAACTATCTCCGGT+GGG + chr4_1:2953681-2953700 None:intergenic 55.0%
TCACCGAGAACTATCTCCGG+TGG + chr4_1:2953682-2953701 None:intergenic 55.0%
!! CAAAGGGTACTCCTAGCCGT+TGG - chr4_1:2953989-2954008 Msa0529420:CDS 55.0%
!! AGCCGCAAGTGTTGGCCTAG+CGG - chr4_1:2953555-2953574 Msa0529420:intron 60.0%
TGTTGCGAGCAGCAACCGCT+AGG + chr4_1:2953573-2953592 None:intergenic 60.0%
GGGATACACCCATCTCGGCT+AGG + chr4_1:2953657-2953676 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG + chr4_1:2953662-2953681 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG + chr4_1:2953677-2953696 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG + chr4_1:2953678-2953697 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG + chr4_1:2953679-2953698 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG - chr4_1:2953676-2953695 Msa0529420:intron 60.0%
!! AGCCGCAAGTGTTGGCCTAG+CGG - chr4_1:2953555-2953574 Msa0529420:intron 60.0%
TGTTGCGAGCAGCAACCGCT+AGG + chr4_1:2953573-2953592 None:intergenic 60.0%
GGGATACACCCATCTCGGCT+AGG + chr4_1:2953657-2953676 None:intergenic 60.0%
TGGGGGGGATACACCCATCT+CGG + chr4_1:2953662-2953681 None:intergenic 60.0%
GAGAACTATCTCCGGTGGGG+GGG + chr4_1:2953677-2953696 None:intergenic 60.0%
CGAGAACTATCTCCGGTGGG+GGG + chr4_1:2953678-2953697 None:intergenic 60.0%
CCGAGAACTATCTCCGGTGG+GGG + chr4_1:2953679-2953698 None:intergenic 60.0%
CCCCCACCGGAGATAGTTCT+CGG - chr4_1:2953676-2953695 Msa0529420:intron 60.0%
GGTGTTCCATCCGGCTGCCA+TGG + chr4_1:2953497-2953516 None:intergenic 65.0%
TGCGGCTATTGGACCGCCGT+GGG + chr4_1:2953542-2953561 None:intergenic 65.0%
TTGCGGCTATTGGACCGCCG+TGG + chr4_1:2953543-2953562 None:intergenic 65.0%
GCGGTTGCTGCTCGCAACAC+CGG - chr4_1:2953574-2953593 Msa0529420:intron 65.0%
GATGGGTGTATCCCCCCCAC+CGG - chr4_1:2953663-2953682 Msa0529420:intron 65.0%
GGTGTTCCATCCGGCTGCCA+TGG + chr4_1:2953497-2953516 None:intergenic 65.0%
TGCGGCTATTGGACCGCCGT+GGG + chr4_1:2953542-2953561 None:intergenic 65.0%
TTGCGGCTATTGGACCGCCG+TGG + chr4_1:2953543-2953562 None:intergenic 65.0%
GCGGTTGCTGCTCGCAACAC+CGG - chr4_1:2953574-2953593 Msa0529420:intron 65.0%
GATGGGTGTATCCCCCCCAC+CGG - chr4_1:2953663-2953682 Msa0529420:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 2952761 2954062 2952761 ID=Msa0529420;Name=Msa0529420
chr4_1 mRNA 2952761 2954062 2952761 ID=Msa0529420-mRNA-1;Parent=Msa0529420;Name=Msa0529420-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|232
chr4_1 exon 2953976 2954062 2953976 ID=Msa0529420-mRNA-1:exon:833;Parent=Msa0529420-mRNA-1
chr4_1 exon 2952761 2953372 2952761 ID=Msa0529420-mRNA-1:exon:832;Parent=Msa0529420-mRNA-1
chr4_1 CDS 2953976 2954062 2953976 ID=Msa0529420-mRNA-1:cds;Parent=Msa0529420-mRNA-1
chr4_1 CDS 2952761 2953372 2952761 ID=Msa0529420-mRNA-1:cds;Parent=Msa0529420-mRNA-1
Gene Sequence

>Msa0529420

ATGAAGCTTGTTTGGTCTCCAGAAACTGCCTTAAAAGCTTACATAGACACTGTTAAATCCGTAAGCACCTTTCAACCTCAACAACAATGTGAGAAATTCAAGGAATCTGGAGTAGCTGAGCTTCTATCATCCATGGCAGCCGGATGGAACACCAAATTCATCGTAGAATGTTATTCCCACGGCGGTCCAATAGCCGCAAGTGTTGGCCTAGCGGTTGCTGCTCGCAACACCGGTGCAAGACACGTGTGCATAGTCCCAGATGAAGGGTCAAGATTGCAATACACAAAAGCCCTAGCCGAGATGGGTGTATCCCCCCCACCGGAGATAGTTCTCGGTGAAGCGCAAACGGTGATCAAAAGTCTTGATGGGTTGGATTTTCTTGTGGTGGATTGTAGGCTTAGGGATTTTGCTAGGGTTCTTAAGGTTGCAAAGGTGAGTACTAGAGGGGCAGTTTTGGCATGTAAAAATGCATGGCAAAGGTCAAATGTTTCTTGGTTTAAATGGAACATGGTTCTTGAAAGAGGCACACGTGTGGTTAGATCGGTTTTTTTGCCTGTTGGAAAGGGTTTGGATATTGCTTACATAGGAAGTAGAATCGGTGGTGGTGCAGCTTCAAGTAGTGCTTCAAAGGGTACTCCTAGCCGTTGGATCAAACTCATAGATCAAAAATCAGGAGAAGAACATCTCTATAGAGAGTGA

Protein sequence

>Msa0529420

MKLVWSPETALKAYIDTVKSVSTFQPQQQCEKFKESGVAELLSSMAAGWNTKFIVECYSHGGPIAASVGLAVAARNTGARHVCIVPDEGSRLQYTKALAEMGVSPPPEIVLGEAQTVIKSLDGLDFLVVDCRLRDFARVLKVAKVSTRGAVLACKNAWQRSNVSWFKWNMVLERGTRVVRSVFLPVGKGLDIAYIGSRIGGGAASSSASKGTPSRWIKLIDQKSGEEHLYRE*