AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1296490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296490 MtrunA17_Chr4g0053241 96.761 247 8 0 1 247 1 247 0.0 496
Msa1296490 MtrunA17_Chr4g0053031 85.081 248 37 0 1 248 1 248 1.24e-162 450
Msa1296490 MtrunA17_Chr4g0053331 79.757 247 45 1 1 247 1 242 6.99e-149 415
Msa1296490 MtrunA17_Chr4g0053021 82.186 247 42 1 1 247 1 245 4.43e-143 400
Msa1296490 MtrunA17_Chr4g0044581 68.443 244 72 1 4 247 8 246 2.39e-126 358
Msa1296490 MtrunA17_Chr8g0344401 58.009 231 95 1 18 246 3 233 2.93e-91 268
Msa1296490 MtrunA17_Chr8g0389361 55.804 224 98 1 24 247 17 239 7.82e-83 247
Msa1296490 MtrunA17_Chr6g0487981 56.637 226 95 2 23 247 14 237 1.11e-82 247
Msa1296490 MtrunA17_Chr4g0051041 55.310 226 98 3 22 245 3 227 4.58e-81 243
Msa1296490 MtrunA17_Chr2g0312921 36.015 261 126 8 8 246 56 297 3.55e-46 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1296490 AT4G34050.1 68.571 245 76 1 5 248 15 259 4.98e-127 360
Msa1296490 AT4G34050.3 68.571 245 76 1 5 248 42 286 6.48e-127 361
Msa1296490 AT4G26220.1 57.522 226 95 1 22 247 7 231 1.05e-93 275
Msa1296490 AT1G67980.1 56.140 228 94 3 22 247 8 231 6.80e-87 258
Msa1296490 AT1G67990.1 52.137 234 107 3 16 247 2 232 1.34e-79 239
Msa1296490 AT1G24735.1 53.304 227 100 4 24 247 16 239 1.10e-76 232
Msa1296490 AT1G24735.3 53.684 190 84 3 59 247 8 194 2.62e-65 201
Msa1296490 AT1G24735.2 53.684 190 84 3 59 247 104 290 2.67e-64 202
Msa1296490 AT4G34050.2 68.067 119 38 0 130 248 30 148 1.39e-59 185
Msa1296490 AT3G62000.1 40.969 227 104 8 30 246 71 277 5.12e-47 157
Msa1296490 AT1G67980.2 46.988 166 84 2 82 247 2 163 2.11e-46 152
Msa1296490 AT3G61990.1 39.819 221 112 6 30 246 86 289 4.90e-44 150
Msa1296490 AT3G62000.2 40.553 217 99 8 30 236 71 267 2.37e-40 142

Find 54 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGAACACAATGGAAAT+TGG 0.290180 8_3:+56076903 Msa1296490:CDS
CTCTTATTAGGTATTGGCTT+TGG 0.296103 8_3:+56078089 Msa1296490:intron
CACCTATGATGGATTTCATT+AGG 0.322716 8_3:+56078553 Msa1296490:CDS
TGATTGATCTTGTTAAGGTT+GGG 0.361490 8_3:+56078472 Msa1296490:CDS
TTCAAGCAAGGGTGTTCTCT+TGG 0.372126 8_3:-56076192 None:intergenic
CAAGAGATGGCTATCAATAA+TGG 0.384566 8_3:+56075537 None:intergenic
TAGGATACGATAATACCTTA+TGG 0.389410 8_3:+56078502 Msa1296490:CDS
ATGATTGATCTTGTTAAGGT+TGG 0.391503 8_3:+56078471 Msa1296490:CDS
AAGAGAACACCCTTGCTTGA+AGG 0.414633 8_3:+56076194 Msa1296490:CDS
GCCCTTGCTCTTCCATCTGA+TGG 0.437597 8_3:+56076957 Msa1296490:CDS
TGAAGGAGTTCATCAAGAAA+AGG 0.438463 8_3:-56078204 None:intergenic
GAGGATGATTGATCTTGTTA+AGG 0.466309 8_3:+56078467 Msa1296490:CDS
TCCATCTGATGCACCTATGA+TGG 0.468925 8_3:+56078542 Msa1296490:CDS
GAAGCAAACATACATCTTGA+AGG 0.470286 8_3:-56078221 None:intergenic
TTCCTAATGAAATCCATCAT+AGG 0.472967 8_3:-56078555 None:intergenic
GATTGATCTTGTTAAGGTTG+GGG 0.475443 8_3:+56078473 Msa1296490:CDS
TTAGTTGATGCGGCGACATA+AGG 0.477226 8_3:-56078667 None:intergenic
CGCCACTGATCCACTCCATA+AGG 0.479866 8_3:-56078517 None:intergenic
TCATCAAGAAAAGGGAGAGC+AGG 0.480559 8_3:-56078195 None:intergenic
GAGTCGAGAATACTATGAGC+TGG 0.495341 8_3:+56078116 Msa1296490:CDS
TATAAGTTGTCCTTCATCAC+CGG 0.497804 8_3:-56076856 None:intergenic
TTGCTCACAAGATTGACTTT+AGG 0.499180 8_3:+56078166 Msa1296490:CDS
AGCCTTACCTTTCCATCAGA+TGG 0.499930 8_3:-56076969 None:intergenic
CATCACCGGGTATAGCCATA+TGG 0.500442 8_3:-56076842 None:intergenic
GAAGGAGTTCATCAAGAAAA+GGG 0.500517 8_3:-56078203 None:intergenic
AGATGGAAGAGCAAGGGCAG+TGG 0.505752 8_3:-56076952 None:intergenic
TGTCAACTCTCTATAGCTGA+TGG 0.510176 8_3:+56078639 Msa1296490:CDS
ATGGCTATACCCGGTGATGA+AGG 0.518965 8_3:+56076846 Msa1296490:CDS
GATTTGCGTCTCCGATGAGT+TGG 0.538504 8_3:-56075575 None:intergenic
TGCTCTTCCATCTGATGGAA+AGG 0.540500 8_3:+56076962 Msa1296490:CDS
TCACGGAGCTCCTTCAAGCA+AGG 0.557059 8_3:-56076204 None:intergenic
GTCAACTCTCTATAGCTGAT+GGG 0.563049 8_3:+56078640 Msa1296490:CDS
ATAAGTTGTCCTTCATCACC+GGG 0.570862 8_3:-56076855 None:intergenic
ATTGATCTTGTTAAGGTTGG+GGG 0.571837 8_3:+56078474 Msa1296490:CDS
CACGGAGCTCCTTCAAGCAA+GGG 0.571847 8_3:-56076203 None:intergenic
CACAAGATTGACTTTAGGCA+AGG 0.576679 8_3:+56078171 Msa1296490:CDS
ATATTGAAACAGGAACCATA+TGG 0.577851 8_3:+56076827 Msa1296490:intron
GATAAAGTGCATCACTCTGA+AGG 0.581770 8_3:-56075614 None:intergenic
TCCATCATAGGTGCATCAGA+TGG 0.582973 8_3:-56078543 None:intergenic
TACGATAATACCTTATGGAG+TGG 0.587648 8_3:+56078507 Msa1296490:CDS
AGGACAACTTATAAGCATGT+TGG 0.591106 8_3:+56076866 Msa1296490:CDS
AGTCGAGAATACTATGAGCT+GGG 0.593435 8_3:+56078117 Msa1296490:CDS
TACCTTATGGAGTGGATCAG+TGG 0.602136 8_3:+56078515 Msa1296490:CDS
TTCCATCAGATGGAAGAGCA+AGG 0.602361 8_3:-56076959 None:intergenic
TCCATCAGATGGAAGAGCAA+GGG 0.613310 8_3:-56076958 None:intergenic
GAACAACAAAACCAACTCAT+CGG 0.626049 8_3:+56075564 Msa1296490:CDS
ATGGAAATTGGTGTGTACAC+TGG 0.640887 8_3:+56076915 Msa1296490:CDS
AAATGAGAGATTAGTTGATG+CGG 0.647761 8_3:-56078677 None:intergenic
TATCAATGCAAAGAACACAA+TGG 0.649047 8_3:+56076896 Msa1296490:CDS
GATGGCTATCAATAATGGAG+AGG 0.655271 8_3:+56075542 None:intergenic
GATTTCATTAGGAATTTACG+TGG 0.656840 8_3:+56078564 Msa1296490:CDS
AGGAACCATATGGCTATACC+CGG 0.667991 8_3:+56076837 Msa1296490:intron
ACTACTTAAACTATCACGTG+AGG 0.676055 8_3:+56078448 Msa1296490:CDS
CTTATGGAGTGGATCAGTGG+CGG 0.687276 8_3:+56078518 Msa1296490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTGTTTTTTTATTATA+AGG - chr8_3:56076280-56076299 None:intergenic 10.0%
!! TCAACAAAAAAAAAAAACTT+GGG + chr8_3:56076137-56076156 Msa1296490:intron 15.0%
!! TCTCAAAATAACATATATTT+GGG - chr8_3:56076346-56076365 None:intergenic 15.0%
!! TTCTCAAAATAACATATATT+TGG - chr8_3:56076347-56076366 None:intergenic 15.0%
!!! TATATATTTTTTCATAAGCA+TGG - chr8_3:56076727-56076746 None:intergenic 15.0%
!! AGTGTATAATCTTATAAATA+AGG - chr8_3:56077015-56077034 None:intergenic 15.0%
!!! AACAAAGAAATACTTTTAAA+AGG - chr8_3:56077666-56077685 None:intergenic 15.0%
!!! AATTGATAATGAAATAAAGT+TGG - chr8_3:56078255-56078274 None:intergenic 15.0%
!! GATTAATTATCTAATTGAAT+TGG + chr8_3:56078355-56078374 Msa1296490:intron 15.0%
!!! TTATTTTCCTGTAAAATTAA+TGG - chr8_3:56078384-56078403 None:intergenic 15.0%
!! GATAAATGAGAAAATAATAG+TGG - chr8_3:56075719-56075738 None:intergenic 20.0%
!!! TTTTCTCATTTATCTTGTTT+CGG + chr8_3:56075725-56075744 Msa1296490:intron 20.0%
!! GTCAACAAAAAAAAAAAACT+TGG + chr8_3:56076136-56076155 Msa1296490:intron 20.0%
!!! ATATTCCCAACAAATATTTT+TGG + chr8_3:56076305-56076324 Msa1296490:intron 20.0%
!! TTGTTCCAAAAATATTTGTT+GGG - chr8_3:56076313-56076332 None:intergenic 20.0%
!! TTTGTTCCAAAAATATTTGT+TGG - chr8_3:56076314-56076333 None:intergenic 20.0%
!!! TTGTTTTCACTTTTTTAAAG+TGG + chr8_3:56076371-56076390 Msa1296490:intron 20.0%
!!! TGTTTTCACTTTTTTAAAGT+GGG + chr8_3:56076372-56076391 Msa1296490:intron 20.0%
!!! ATGAATTTTAGTAATCTCAA+AGG + chr8_3:56076769-56076788 Msa1296490:intron 20.0%
!! ATCAATATGTATATTGAAAC+AGG + chr8_3:56076817-56076836 Msa1296490:intron 20.0%
!!! ATTTTACTTAATTGCAGTTT+TGG + chr8_3:56077093-56077112 Msa1296490:intron 20.0%
!! AAAATTACGCGATTAAAAAT+AGG - chr8_3:56077152-56077171 None:intergenic 20.0%
!!! TATTTTTAATCGCGTAATTT+TGG + chr8_3:56077151-56077170 Msa1296490:intron 20.0%
!! TTGAAATGATAAAAGATGTT+GGG - chr8_3:56077240-56077259 None:intergenic 20.0%
!! GTTCTTATAATTAGAAATGA+AGG - chr8_3:56077616-56077635 None:intergenic 20.0%
!!! ATTTTACAGGAAAATAACAA+AGG + chr8_3:56078387-56078406 Msa1296490:intron 20.0%
!!! TTTTACAGGAAAATAACAAA+GGG + chr8_3:56078388-56078407 Msa1296490:intron 20.0%
! AATAGATGACTAGATAATTG+TGG - chr8_3:56075646-56075665 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG + chr8_3:56075783-56075802 Msa1296490:intron 25.0%
! GTGTAATAATCAAACATAAG+AGG - chr8_3:56075909-56075928 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG - chr8_3:56075958-56075977 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr8_3:56075996-56076015 Msa1296490:intron 25.0%
!!! AACCACTTTTTGATAACTTT+TGG - chr8_3:56076081-56076100 None:intergenic 25.0%
! GAATTCAAGTATATACTACT+TGG - chr8_3:56076674-56076693 None:intergenic 25.0%
! GAATTCTTTGCTAATTTGAT+AGG + chr8_3:56076688-56076707 Msa1296490:intron 25.0%
!!! TAATCTCAAAGGTTTAGTTT+TGG + chr8_3:56076780-56076799 Msa1296490:intron 25.0%
! ATAAGGATAGATGAGTAATA+AGG - chr8_3:56076998-56077017 None:intergenic 25.0%
! GTTGAAATGATAAAAGATGT+TGG - chr8_3:56077241-56077260 None:intergenic 25.0%
! AAATATGAAGACCATAATTG+TGG + chr8_3:56077454-56077473 Msa1296490:intron 25.0%
!! TTTTGACAAAACCACAATTA+TGG - chr8_3:56077468-56077487 None:intergenic 25.0%
AATAAGAAGTGAGAAAACCA+AGG - chr8_3:56075984-56076003 None:intergenic 30.0%
!! TTGGTTTTCTCACTTCTTAT+TGG + chr8_3:56075983-56076002 Msa1296490:intron 30.0%
GTCCAAAAGTTATCAAAAAG+TGG + chr8_3:56076076-56076095 Msa1296490:intron 30.0%
TTGACAAAGCACAATATAAG+TGG - chr8_3:56076121-56076140 None:intergenic 30.0%
!!! TTTCACTTTTTTAAAGTGGG+TGG + chr8_3:56076375-56076394 Msa1296490:intron 30.0%
ATATTGAAACAGGAACCATA+TGG + chr8_3:56076827-56076846 Msa1296490:intron 30.0%
TATCAATGCAAAGAACACAA+TGG + chr8_3:56076896-56076915 Msa1296490:CDS 30.0%
GTTGCGGTTCTATTTAAATA+AGG - chr8_3:56077121-56077140 None:intergenic 30.0%
ATTTAAATAGAACCGCAACT+TGG + chr8_3:56077122-56077141 Msa1296490:intron 30.0%
ATTACGCGATTAAAAATAGG+AGG - chr8_3:56077149-56077168 None:intergenic 30.0%
! AGTCAACGAATTTGAAATGA+GGG - chr8_3:56077178-56077197 None:intergenic 30.0%
! TAGTCAACGAATTTGAAATG+AGG - chr8_3:56077179-56077198 None:intergenic 30.0%
!! AACCATCTAATTTGATGATG+TGG - chr8_3:56077378-56077397 None:intergenic 30.0%
!!! TATTTCGAGTTGCTCAATTT+TGG - chr8_3:56077439-56077458 None:intergenic 30.0%
! TACCAATATTGAACGTTTTC+CGG - chr8_3:56077831-56077850 None:intergenic 30.0%
ATCATTGTCTCTCTCTTATT+AGG + chr8_3:56078077-56078096 Msa1296490:intron 30.0%
ATGCATGGATGAAATCAAAT+TGG - chr8_3:56078302-56078321 None:intergenic 30.0%
!! TTGGTGTCCATTAATTTTAC+AGG + chr8_3:56078374-56078393 Msa1296490:intron 30.0%
ATGATTGATCTTGTTAAGGT+TGG + chr8_3:56078471-56078490 Msa1296490:CDS 30.0%
TGATTGATCTTGTTAAGGTT+GGG + chr8_3:56078472-56078491 Msa1296490:CDS 30.0%
TAGGATACGATAATACCTTA+TGG + chr8_3:56078502-56078521 Msa1296490:CDS 30.0%
TTCCTAATGAAATCCATCAT+AGG - chr8_3:56078558-56078577 None:intergenic 30.0%
GATTTCATTAGGAATTTACG+TGG + chr8_3:56078564-56078583 Msa1296490:CDS 30.0%
GAACAACAAAACCAACTCAT+CGG + chr8_3:56075564-56075583 Msa1296490:CDS 35.0%
TATAAGTTGTCCTTCATCAC+CGG - chr8_3:56076859-56076878 None:intergenic 35.0%
AGGACAACTTATAAGCATGT+TGG + chr8_3:56076866-56076885 Msa1296490:CDS 35.0%
GCAAAGAACACAATGGAAAT+TGG + chr8_3:56076903-56076922 Msa1296490:CDS 35.0%
AGGATAGATGAGTAATAAGG+TGG - chr8_3:56076995-56077014 None:intergenic 35.0%
TGACATGACTTGAAAACGAA+TGG - chr8_3:56077343-56077362 None:intergenic 35.0%
TGCCACATCATCAAATTAGA+TGG + chr8_3:56077373-56077392 Msa1296490:intron 35.0%
!!! TGTGGTTTTGTCAAAAGATG+TGG + chr8_3:56077472-56077491 Msa1296490:intron 35.0%
GGAAATGTTTGATGCTTCTT+GGG + chr8_3:56077926-56077945 Msa1296490:intron 35.0%
GAAATGTTTGATGCTTCTTG+GGG + chr8_3:56077927-56077946 Msa1296490:intron 35.0%
TATCTACTCGACAATTCATC+CGG - chr8_3:56077976-56077995 None:intergenic 35.0%
GTCTCTCTCTTATTAGGTAT+TGG + chr8_3:56078083-56078102 Msa1296490:intron 35.0%
!! CTCTTATTAGGTATTGGCTT+TGG + chr8_3:56078089-56078108 Msa1296490:intron 35.0%
! TTGCTCACAAGATTGACTTT+AGG + chr8_3:56078166-56078185 Msa1296490:CDS 35.0%
GAAGGAGTTCATCAAGAAAA+GGG - chr8_3:56078206-56078225 None:intergenic 35.0%
TGAAGGAGTTCATCAAGAAA+AGG - chr8_3:56078207-56078226 None:intergenic 35.0%
GAAGCAAACATACATCTTGA+AGG - chr8_3:56078224-56078243 None:intergenic 35.0%
!!! GACGTTTGACTTTGTTTTTG+TGG + chr8_3:56078410-56078429 Msa1296490:CDS 35.0%
ACTACTTAAACTATCACGTG+AGG + chr8_3:56078448-56078467 Msa1296490:CDS 35.0%
GAGGATGATTGATCTTGTTA+AGG + chr8_3:56078467-56078486 Msa1296490:CDS 35.0%
GATTGATCTTGTTAAGGTTG+GGG + chr8_3:56078473-56078492 Msa1296490:CDS 35.0%
ATTGATCTTGTTAAGGTTGG+GGG + chr8_3:56078474-56078493 Msa1296490:CDS 35.0%
TACGATAATACCTTATGGAG+TGG + chr8_3:56078507-56078526 Msa1296490:CDS 35.0%
!! CACCTATGATGGATTTCATT+AGG + chr8_3:56078553-56078572 Msa1296490:CDS 35.0%
GATAAAGTGCATCACTCTGA+AGG - chr8_3:56075617-56075636 None:intergenic 40.0%
GACAACTTTGTTGACAACCT+TGG + chr8_3:56075964-56075983 Msa1296490:intron 40.0%
! GGTGTTTTTCTGTCATCTCA+CGG - chr8_3:56076224-56076243 None:intergenic 40.0%
AGATGACAGAAAAACACCCT+CGG + chr8_3:56076226-56076245 Msa1296490:CDS 40.0%
ACAACGTATGATCTTACCGA+GGG - chr8_3:56076245-56076264 None:intergenic 40.0%
AACAACGTATGATCTTACCG+AGG - chr8_3:56076246-56076265 None:intergenic 40.0%
!!! CTTTTTTAAAGTGGGTGGAG+TGG + chr8_3:56076380-56076399 Msa1296490:intron 40.0%
ATAAGTTGTCCTTCATCACC+GGG - chr8_3:56076858-56076877 None:intergenic 40.0%
ATGGAAATTGGTGTGTACAC+TGG + chr8_3:56076915-56076934 Msa1296490:CDS 40.0%
TTCCATCTGATGGAAAGGTA+AGG + chr8_3:56076967-56076986 Msa1296490:intron 40.0%
AAAATAGGAGGACCAAGTTG+CGG - chr8_3:56077137-56077156 None:intergenic 40.0%
!! ACTAAAAGCATCTCCAAAGC+CGG + chr8_3:56077809-56077828 Msa1296490:intron 40.0%
! TATTGAACGTTTTCCGGCTT+TGG - chr8_3:56077825-56077844 None:intergenic 40.0%
AGCCGGAAAACGTTCAATAT+TGG + chr8_3:56077826-56077845 Msa1296490:intron 40.0%
CGGAAATGTTTGATGCTTCT+TGG + chr8_3:56077925-56077944 Msa1296490:intron 40.0%
TCGAGTAGATAGATCAGATC+CGG + chr8_3:56077985-56078004 Msa1296490:intron 40.0%
AGTCGAGAATACTATGAGCT+GGG + chr8_3:56078117-56078136 Msa1296490:CDS 40.0%
ACTGCCCATGATTGAAAAAG+CGG + chr8_3:56078140-56078159 Msa1296490:CDS 40.0%
!!! ACTCCCGCTTTTTCAATCAT+GGG - chr8_3:56078147-56078166 None:intergenic 40.0%
!!! AACTCCCGCTTTTTCAATCA+TGG - chr8_3:56078148-56078167 None:intergenic 40.0%
! CACAAGATTGACTTTAGGCA+AGG + chr8_3:56078171-56078190 Msa1296490:CDS 40.0%
CTAAGTTTGCGAAACATGCA+TGG - chr8_3:56078317-56078336 None:intergenic 40.0%
TGTCAACTCTCTATAGCTGA+TGG + chr8_3:56078639-56078658 Msa1296490:CDS 40.0%
GTCAACTCTCTATAGCTGAT+GGG + chr8_3:56078640-56078659 Msa1296490:CDS 40.0%
!! TTCAAGCAAGGGTGTTCTCT+TGG - chr8_3:56076195-56076214 None:intergenic 45.0%
AAGAGAACACCCTTGCTTGA+AGG + chr8_3:56076194-56076213 Msa1296490:CDS 45.0%
AGGAACCATATGGCTATACC+CGG + chr8_3:56076837-56076856 Msa1296490:intron 45.0%
TCCATCAGATGGAAGAGCAA+GGG - chr8_3:56076961-56076980 None:intergenic 45.0%
TTCCATCAGATGGAAGAGCA+AGG - chr8_3:56076962-56076981 None:intergenic 45.0%
TGCTCTTCCATCTGATGGAA+AGG + chr8_3:56076962-56076981 Msa1296490:CDS 45.0%
AGCCTTACCTTTCCATCAGA+TGG - chr8_3:56076972-56076991 None:intergenic 45.0%
GATGAGCGAGAATGAGAGTA+GGG - chr8_3:56077906-56077925 None:intergenic 45.0%
CTACTCTCATTCTCGCTCAT+CGG + chr8_3:56077905-56077924 Msa1296490:intron 45.0%
GAGTCGAGAATACTATGAGC+TGG + chr8_3:56078116-56078135 Msa1296490:CDS 45.0%
CTGCCCATGATTGAAAAAGC+GGG + chr8_3:56078141-56078160 Msa1296490:CDS 45.0%
TCATCAAGAAAAGGGAGAGC+AGG - chr8_3:56078198-56078217 None:intergenic 45.0%
GTTAAGGTTGGGGGACTAAT+AGG + chr8_3:56078483-56078502 Msa1296490:CDS 45.0%
TACCTTATGGAGTGGATCAG+TGG + chr8_3:56078515-56078534 Msa1296490:CDS 45.0%
TCCATCTGATGCACCTATGA+TGG + chr8_3:56078542-56078561 Msa1296490:CDS 45.0%
TCCATCATAGGTGCATCAGA+TGG - chr8_3:56078546-56078565 None:intergenic 45.0%
! TTAGTTGATGCGGCGACATA+AGG - chr8_3:56078670-56078689 None:intergenic 45.0%
!!! AATAATAATTTTACATAAAT+TGG - chr8_3:56077076-56077095 None:intergenic 5.0%
GATTTGCGTCTCCGATGAGT+TGG - chr8_3:56075578-56075597 None:intergenic 50.0%
CATCACCGGGTATAGCCATA+TGG - chr8_3:56076845-56076864 None:intergenic 50.0%
ATGGCTATACCCGGTGATGA+AGG + chr8_3:56076846-56076865 Msa1296490:CDS 50.0%
AGGAGAAACGGGTGAAGTTG+GGG - chr8_3:56077881-56077900 None:intergenic 50.0%
CAGGAGAAACGGGTGAAGTT+GGG - chr8_3:56077882-56077901 None:intergenic 50.0%
ACAGGAGAAACGGGTGAAGT+TGG - chr8_3:56077883-56077902 None:intergenic 50.0%
AGAGTAGGGACAGGAGAAAC+GGG - chr8_3:56077892-56077911 None:intergenic 50.0%
GAGAGTAGGGACAGGAGAAA+CGG - chr8_3:56077893-56077912 None:intergenic 50.0%
CGATGAGCGAGAATGAGAGT+AGG - chr8_3:56077907-56077926 None:intergenic 50.0%
GATGCTTCTTGGGGCTTCTT+TGG + chr8_3:56077936-56077955 Msa1296490:intron 50.0%
TTTGGCGAACGTGAAGTCAC+CGG + chr8_3:56077954-56077973 Msa1296490:intron 50.0%
AGATAGATCAGATCCGGACG+CGG + chr8_3:56077991-56078010 Msa1296490:intron 50.0%
CTTATGGAGTGGATCAGTGG+CGG + chr8_3:56078518-56078537 Msa1296490:CDS 50.0%
CACGGAGCTCCTTCAAGCAA+GGG - chr8_3:56076206-56076225 None:intergenic 55.0%
TCACGGAGCTCCTTCAAGCA+AGG - chr8_3:56076207-56076226 None:intergenic 55.0%
AGATGGAAGAGCAAGGGCAG+TGG - chr8_3:56076955-56076974 None:intergenic 55.0%
GCCCTTGCTCTTCCATCTGA+TGG + chr8_3:56076957-56076976 Msa1296490:CDS 55.0%
ACGGGTGAAGTTGGGGCTTA+TGG - chr8_3:56077874-56077893 None:intergenic 55.0%
GCGAGAATGAGAGTAGGGAC+AGG - chr8_3:56077901-56077920 None:intergenic 55.0%
CGCCACTGATCCACTCCATA+AGG - chr8_3:56078520-56078539 None:intergenic 55.0%
GCTGTTGCTCCGCGGTGATA+CGG + chr8_3:56078013-56078032 Msa1296490:intron 60.0%
AAAACATCTCCTGCCCCCGC+AGG - chr8_3:56078040-56078059 None:intergenic 60.0%
TCCGCGGTGATACGGACCTG+CGG + chr8_3:56078021-56078040 Msa1296490:intron 65.0%
CCCGCAGGTCCGTATCACCG+CGG - chr8_3:56078025-56078044 None:intergenic 70.0%
CCGCGGTGATACGGACCTGC+GGG + chr8_3:56078022-56078041 Msa1296490:intron 70.0%
CGCGGTGATACGGACCTGCG+GGG + chr8_3:56078023-56078042 Msa1296490:intron 70.0%
GCGGTGATACGGACCTGCGG+GGG + chr8_3:56078024-56078043 Msa1296490:intron 70.0%
TGATACGGACCTGCGGGGGC+AGG + chr8_3:56078028-56078047 Msa1296490:intron 70.0%
CGCGGAGCAACAGCCGCGTC+CGG - chr8_3:56078007-56078026 None:intergenic 75.0%
CGGACGCGGCTGTTGCTCCG+CGG + chr8_3:56078005-56078024 Msa1296490:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 56075543 56078689 56075543 ID=Msa1296490;Name=Msa1296490
chr8_3 mRNA 56075543 56078689 56075543 ID=Msa1296490-mRNA-1;Parent=Msa1296490;Name=Msa1296490-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|248
chr8_3 exon 56075543 56075638 56075543 ID=Msa1296490-mRNA-1:exon:16068;Parent=Msa1296490-mRNA-1
chr8_3 exon 56076168 56076247 56076168 ID=Msa1296490-mRNA-1:exon:16069;Parent=Msa1296490-mRNA-1
chr8_3 exon 56076839 56076983 56076839 ID=Msa1296490-mRNA-1:exon:16070;Parent=Msa1296490-mRNA-1
chr8_3 exon 56078099 56078230 56078099 ID=Msa1296490-mRNA-1:exon:16071;Parent=Msa1296490-mRNA-1
chr8_3 exon 56078396 56078689 56078396 ID=Msa1296490-mRNA-1:exon:16072;Parent=Msa1296490-mRNA-1
chr8_3 CDS 56075543 56075638 56075543 ID=Msa1296490-mRNA-1:cds;Parent=Msa1296490-mRNA-1
chr8_3 CDS 56076168 56076247 56076168 ID=Msa1296490-mRNA-1:cds;Parent=Msa1296490-mRNA-1
chr8_3 CDS 56076839 56076983 56076839 ID=Msa1296490-mRNA-1:cds;Parent=Msa1296490-mRNA-1
chr8_3 CDS 56078099 56078230 56078099 ID=Msa1296490-mRNA-1:cds;Parent=Msa1296490-mRNA-1
chr8_3 CDS 56078396 56078689 56078396 ID=Msa1296490-mRNA-1:cds;Parent=Msa1296490-mRNA-1
Gene Sequence

>Msa1296490

ATGGCTATCAATAATGGAGAGGAACAACAAAACCAACTCATCGGAGACGCAAATCTTGCTCACAAGACTCTCCTTCAGAGTGATGCACTTTATCAATATATACTTGAAACAAGTGTGTTTCCAAGAGAACACCCTTGCTTGAAGGAGCTCCGTGAGATGACAGAAAAACACCCTCGGAACCATATGGCTATACCCGGTGATGAAGGACAACTTATAAGCATGTTGGTTAAGCTTATCAATGCAAAGAACACAATGGAAATTGGTGTGTACACTGGTTACTCTCTACTCTCCACTGCCCTTGCTCTTCCATCTGATGGAAAGGTATTGGCTTTGGATCTGAGTCGAGAATACTATGAGCTGGGACTGCCCATGATTGAAAAAGCGGGAGTTGCTCACAAGATTGACTTTAGGCAAGGACCTGCTCTCCCTTTTCTTGATGAACTCCTTCAAGATGAAAATAACAAAGGGACGTTTGACTTTGTTTTTGTGGATGCTGATAAGAATAACTACTTAAACTATCACGTGAGGATGATTGATCTTGTTAAGGTTGGGGGACTAATAGGATACGATAATACCTTATGGAGTGGATCAGTGGCGGTTCCATCTGATGCACCTATGATGGATTTCATTAGGAATTTACGTGGTTATGTGATTGAGTTCAACAAACATCTAGCTCAAGATTCAAGAATTGAGATTTGTCAACTCTCTATAGCTGATGGGATTACCTTATGTCGCCGCATCAACTAA

Protein sequence

>Msa1296490

MAINNGEEQQNQLIGDANLAHKTLLQSDALYQYILETSVFPREHPCLKELREMTEKHPRNHMAIPGDEGQLISMLVKLINAKNTMEIGVYTGYSLLSTALALPSDGKVLALDLSREYYELGLPMIEKAGVAHKIDFRQGPALPFLDELLQDENNKGTFDFVFVDADKNNYLNYHVRMIDLVKVGGLIGYDNTLWSGSVAVPSDAPMMDFIRNLRGYVIEFNKHLAQDSRIEICQLSIADGITLCRRIN*