AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1208140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208140 MtrunA17_Chr4g0053241 96.761 247 8 0 1 247 1 247 0.0 496
Msa1208140 MtrunA17_Chr4g0053031 85.081 248 37 0 1 248 1 248 1.24e-162 450
Msa1208140 MtrunA17_Chr4g0053331 79.757 247 45 1 1 247 1 242 6.99e-149 415
Msa1208140 MtrunA17_Chr4g0053021 82.186 247 42 1 1 247 1 245 4.43e-143 400
Msa1208140 MtrunA17_Chr4g0044581 68.443 244 72 1 4 247 8 246 2.39e-126 358
Msa1208140 MtrunA17_Chr8g0344401 58.009 231 95 1 18 246 3 233 2.93e-91 268
Msa1208140 MtrunA17_Chr8g0389361 55.804 224 98 1 24 247 17 239 7.82e-83 247
Msa1208140 MtrunA17_Chr6g0487981 56.637 226 95 2 23 247 14 237 1.11e-82 247
Msa1208140 MtrunA17_Chr4g0051041 55.310 226 98 3 22 245 3 227 4.58e-81 243
Msa1208140 MtrunA17_Chr2g0312921 36.015 261 126 8 8 246 56 297 3.55e-46 155
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1208140 AT4G34050.1 68.571 245 76 1 5 248 15 259 4.98e-127 360
Msa1208140 AT4G34050.3 68.571 245 76 1 5 248 42 286 6.48e-127 361
Msa1208140 AT4G26220.1 57.522 226 95 1 22 247 7 231 1.05e-93 275
Msa1208140 AT1G67980.1 56.140 228 94 3 22 247 8 231 6.80e-87 258
Msa1208140 AT1G67990.1 52.137 234 107 3 16 247 2 232 1.34e-79 239
Msa1208140 AT1G24735.1 53.304 227 100 4 24 247 16 239 1.10e-76 232
Msa1208140 AT1G24735.3 53.684 190 84 3 59 247 8 194 2.62e-65 201
Msa1208140 AT1G24735.2 53.684 190 84 3 59 247 104 290 2.67e-64 202
Msa1208140 AT4G34050.2 68.067 119 38 0 130 248 30 148 1.39e-59 185
Msa1208140 AT3G62000.1 40.969 227 104 8 30 246 71 277 5.12e-47 157
Msa1208140 AT1G67980.2 46.988 166 84 2 82 247 2 163 2.11e-46 152
Msa1208140 AT3G61990.1 39.819 221 112 6 30 246 86 289 4.90e-44 150
Msa1208140 AT3G62000.2 40.553 217 99 8 30 236 71 267 2.37e-40 142

Find 54 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGAACACAATGGAAAT+TGG 0.290180 8_1:-66079360 Msa1208140:CDS
CTCTTATTAGGTATTGGCTT+TGG 0.296103 8_1:-66078173 Msa1208140:intron
CACCTATGATGGATTTCATT+AGG 0.322716 8_1:-66077709 Msa1208140:CDS
TGATTGATCTTGTTAAGGTT+GGG 0.361490 8_1:-66077790 Msa1208140:CDS
TTCAAGCAAGGGTGTTCTCT+TGG 0.372126 8_1:+66080071 None:intergenic
CAAGAGATGGCTATCAATAA+TGG 0.384566 8_1:-66080725 None:intergenic
TAGGATACGATAATACCTTA+TGG 0.389410 8_1:-66077760 Msa1208140:CDS
ATGATTGATCTTGTTAAGGT+TGG 0.391503 8_1:-66077791 Msa1208140:CDS
AAGAGAACACCCTTGCTTGA+AGG 0.414633 8_1:-66080069 Msa1208140:CDS
GCCCTTGCTCTTCCATCTGA+TGG 0.437597 8_1:-66079306 Msa1208140:CDS
TGAAGGAGTTCATCAAGAAA+AGG 0.438463 8_1:+66078058 None:intergenic
GAGGATGATTGATCTTGTTA+AGG 0.466309 8_1:-66077795 Msa1208140:CDS
TCCATCTGATGCACCTATGA+TGG 0.468925 8_1:-66077720 Msa1208140:CDS
GAAGCAAACATACATCTTGA+AGG 0.470286 8_1:+66078041 None:intergenic
TTCCTAATGAAATCCATCAT+AGG 0.472967 8_1:+66077707 None:intergenic
GATTGATCTTGTTAAGGTTG+GGG 0.475443 8_1:-66077789 Msa1208140:CDS
TTAGTTGATGCGGCGACATA+AGG 0.477226 8_1:+66077595 None:intergenic
CGCCACTGATCCACTCCATA+AGG 0.479866 8_1:+66077745 None:intergenic
TCATCAAGAAAAGGGAGAGC+AGG 0.480559 8_1:+66078067 None:intergenic
GAGTCGAGAATACTATGAGC+TGG 0.495341 8_1:-66078146 Msa1208140:CDS
TATAAGTTGTCCTTCATCAC+CGG 0.497804 8_1:+66079407 None:intergenic
TTGCTCACAAGATTGACTTT+AGG 0.499180 8_1:-66078096 Msa1208140:CDS
AGCCTTACCTTTCCATCAGA+TGG 0.499930 8_1:+66079294 None:intergenic
CATCACCGGGTATAGCCATA+TGG 0.500442 8_1:+66079421 None:intergenic
GAAGGAGTTCATCAAGAAAA+GGG 0.500517 8_1:+66078059 None:intergenic
AGATGGAAGAGCAAGGGCAG+TGG 0.505752 8_1:+66079311 None:intergenic
TGTCAACTCTCTATAGCTGA+TGG 0.510176 8_1:-66077623 Msa1208140:CDS
ATGGCTATACCCGGTGATGA+AGG 0.518965 8_1:-66079417 Msa1208140:CDS
GATTTGCGTCTCCGATGAGT+TGG 0.538504 8_1:+66080687 None:intergenic
TGCTCTTCCATCTGATGGAA+AGG 0.540500 8_1:-66079301 Msa1208140:intron
TCACGGAGCTCCTTCAAGCA+AGG 0.557059 8_1:+66080059 None:intergenic
GTCAACTCTCTATAGCTGAT+GGG 0.563049 8_1:-66077622 Msa1208140:CDS
ATAAGTTGTCCTTCATCACC+GGG 0.570862 8_1:+66079408 None:intergenic
ATTGATCTTGTTAAGGTTGG+GGG 0.571837 8_1:-66077788 Msa1208140:CDS
CACGGAGCTCCTTCAAGCAA+GGG 0.571847 8_1:+66080060 None:intergenic
CACAAGATTGACTTTAGGCA+AGG 0.576679 8_1:-66078091 Msa1208140:CDS
ATATTGAAACAGGAACCATA+TGG 0.577851 8_1:-66079436 Msa1208140:intron
GATAAAGTGCATCACTCTGA+AGG 0.581770 8_1:+66080648 None:intergenic
TCCATCATAGGTGCATCAGA+TGG 0.582973 8_1:+66077719 None:intergenic
TACGATAATACCTTATGGAG+TGG 0.587648 8_1:-66077755 Msa1208140:CDS
AGGACAACTTATAAGCATGT+TGG 0.591106 8_1:-66079397 Msa1208140:CDS
AGTCGAGAATACTATGAGCT+GGG 0.593435 8_1:-66078145 Msa1208140:CDS
TACCTTATGGAGTGGATCAG+TGG 0.602136 8_1:-66077747 Msa1208140:CDS
TTCCATCAGATGGAAGAGCA+AGG 0.602361 8_1:+66079304 None:intergenic
TCCATCAGATGGAAGAGCAA+GGG 0.613310 8_1:+66079305 None:intergenic
GAACAACAAAACCAACTCAT+CGG 0.626049 8_1:-66080698 Msa1208140:CDS
ATGGAAATTGGTGTGTACAC+TGG 0.640887 8_1:-66079348 Msa1208140:CDS
AAATGAGAGATTAGTTGATG+CGG 0.647761 8_1:+66077585 None:intergenic
TATCAATGCAAAGAACACAA+TGG 0.649047 8_1:-66079367 Msa1208140:CDS
GATGGCTATCAATAATGGAG+AGG 0.655271 8_1:-66080720 Msa1208140:CDS
GATTTCATTAGGAATTTACG+TGG 0.656840 8_1:-66077698 Msa1208140:CDS
AGGAACCATATGGCTATACC+CGG 0.667991 8_1:-66079426 Msa1208140:CDS
ACTACTTAAACTATCACGTG+AGG 0.676055 8_1:-66077814 Msa1208140:CDS
CTTATGGAGTGGATCAGTGG+CGG 0.687276 8_1:-66077744 Msa1208140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGTTTGTTTTTTTATTATA+AGG + chr8_1:66078331-66078350 None:intergenic 10.0%
!! TCTCAAAATAACATATATTT+GGG + chr8_1:66078397-66078416 None:intergenic 15.0%
!! TTCTCAAAATAACATATATT+TGG + chr8_1:66078398-66078417 None:intergenic 15.0%
!!! TATATATTTTTTCATAAGCA+TGG + chr8_1:66078778-66078797 None:intergenic 15.0%
!! AGTGTATAATCTTATAAATA+AGG + chr8_1:66079066-66079085 None:intergenic 15.0%
!!! AACAAAGAAATACTTTTAAA+AGG + chr8_1:66079718-66079737 None:intergenic 15.0%
!!! AATTGATAATGAAATAAAGT+TGG + chr8_1:66080307-66080326 None:intergenic 15.0%
!! GATTAATTATCTAATTGAAT+TGG - chr8_1:66080407-66080426 Msa1208140:intron 15.0%
!!! TTATTTTCCTGTAAAATTAA+TGG + chr8_1:66080436-66080455 None:intergenic 15.0%
!! GATAAATGAGAAAATAATAG+TGG + chr8_1:66077771-66077790 None:intergenic 20.0%
!!! TTTTCTCATTTATCTTGTTT+CGG - chr8_1:66077777-66077796 Msa1208140:CDS 20.0%
!! TGTCAACAAAAAAAAAAACT+TGG - chr8_1:66078187-66078206 Msa1208140:intron 20.0%
!! GTCAACAAAAAAAAAAACTT+GGG - chr8_1:66078188-66078207 Msa1208140:intron 20.0%
!!! ATATTCCCAACAAATATTTT+TGG - chr8_1:66078356-66078375 Msa1208140:intron 20.0%
!! TTGTTCCAAAAATATTTGTT+GGG + chr8_1:66078364-66078383 None:intergenic 20.0%
!! TTTGTTCCAAAAATATTTGT+TGG + chr8_1:66078365-66078384 None:intergenic 20.0%
!!! TTGTTTTCACTTTTTTAAAG+TGG - chr8_1:66078422-66078441 Msa1208140:intron 20.0%
!!! TGTTTTCACTTTTTTAAAGT+GGG - chr8_1:66078423-66078442 Msa1208140:intron 20.0%
!!! ATGAATTTTAGTAATCTCAA+AGG - chr8_1:66078820-66078839 Msa1208140:intron 20.0%
!! ATCAATATGTATATTGAAAC+AGG - chr8_1:66078868-66078887 Msa1208140:intron 20.0%
!!! ATTTTACTTAATTGCAGTTT+TGG - chr8_1:66079144-66079163 Msa1208140:intron 20.0%
!! AAAATTACGCGATTAAAAAT+AGG + chr8_1:66079203-66079222 None:intergenic 20.0%
!!! TATTTTTAATCGCGTAATTT+TGG - chr8_1:66079202-66079221 Msa1208140:intron 20.0%
!! TTGAAATGATAAAAGATGTT+GGG + chr8_1:66079291-66079310 None:intergenic 20.0%
!! GTTCTTATAATTAGAAATGA+AGG + chr8_1:66079668-66079687 None:intergenic 20.0%
!!! ATTTTACAGGAAAATAACAA+AGG - chr8_1:66080439-66080458 Msa1208140:intron 20.0%
!!! TTTTACAGGAAAATAACAAA+GGG - chr8_1:66080440-66080459 Msa1208140:intron 20.0%
! AATAGATGACTAGATAATTG+TGG + chr8_1:66077698-66077717 None:intergenic 25.0%
! CATTCATTAAATGATGTATG+TGG - chr8_1:66077835-66077854 Msa1208140:CDS 25.0%
! GTGTAATAATCAAACATAAG+AGG + chr8_1:66077961-66077980 None:intergenic 25.0%
! TCAACAAAGTTGTCATTAAA+TGG + chr8_1:66078010-66078029 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG - chr8_1:66078048-66078067 Msa1208140:intron 25.0%
!!! AACCACTTTTTGATAACTTT+TGG + chr8_1:66078133-66078152 None:intergenic 25.0%
! GAATTCAAGTATATACTACT+TGG + chr8_1:66078725-66078744 None:intergenic 25.0%
! GAATTCTTTGCTAATTTGAT+AGG - chr8_1:66078739-66078758 Msa1208140:intron 25.0%
!!! TAATCTCAAAGGTTTAGTTT+TGG - chr8_1:66078831-66078850 Msa1208140:intron 25.0%
! ATAAGGATAGATGAGTAATA+AGG + chr8_1:66079049-66079068 None:intergenic 25.0%
! GTTGAAATGATAAAAGATGT+TGG + chr8_1:66079292-66079311 None:intergenic 25.0%
! AAATATGAAGACCATAATTG+TGG - chr8_1:66079505-66079524 Msa1208140:intron 25.0%
!! TTTTGACAAAACCACAATTA+TGG + chr8_1:66079519-66079538 None:intergenic 25.0%
AATAAGAAGTGAGAAAACCA+AGG + chr8_1:66078036-66078055 None:intergenic 30.0%
!! TTGGTTTTCTCACTTCTTAT+TGG - chr8_1:66078035-66078054 Msa1208140:intron 30.0%
GTCCAAAAGTTATCAAAAAG+TGG - chr8_1:66078128-66078147 Msa1208140:CDS 30.0%
TTGACAAAGCACAATATAAG+TGG + chr8_1:66078173-66078192 None:intergenic 30.0%
!!! TTTCACTTTTTTAAAGTGGG+TGG - chr8_1:66078426-66078445 Msa1208140:intron 30.0%
ATATTGAAACAGGAACCATA+TGG - chr8_1:66078878-66078897 Msa1208140:intron 30.0%
TATCAATGCAAAGAACACAA+TGG - chr8_1:66078947-66078966 Msa1208140:intron 30.0%
GTTGCGGTTCTATTTAAATA+AGG + chr8_1:66079172-66079191 None:intergenic 30.0%
ATTTAAATAGAACCGCAACT+TGG - chr8_1:66079173-66079192 Msa1208140:intron 30.0%
ATTACGCGATTAAAAATAGG+AGG + chr8_1:66079200-66079219 None:intergenic 30.0%
! AGTCAACGAATTTGAAATGA+GGG + chr8_1:66079229-66079248 None:intergenic 30.0%
! TAGTCAACGAATTTGAAATG+AGG + chr8_1:66079230-66079249 None:intergenic 30.0%
!! AACCATCTAATTTGATGATG+TGG + chr8_1:66079429-66079448 None:intergenic 30.0%
!!! TATTTCGAGTTGCTCAATTT+TGG + chr8_1:66079490-66079509 None:intergenic 30.0%
! TACCAATATTGAACGTTTTC+CGG + chr8_1:66079883-66079902 None:intergenic 30.0%
ATCATTGTCTCTCTCTTATT+AGG - chr8_1:66080129-66080148 Msa1208140:intron 30.0%
ATGCATGGATGAAATCAAAT+TGG + chr8_1:66080354-66080373 None:intergenic 30.0%
!! TTGGTGTCCATTAATTTTAC+AGG - chr8_1:66080426-66080445 Msa1208140:intron 30.0%
ATGATTGATCTTGTTAAGGT+TGG - chr8_1:66080523-66080542 Msa1208140:intron 30.0%
TGATTGATCTTGTTAAGGTT+GGG - chr8_1:66080524-66080543 Msa1208140:intron 30.0%
TAGGATACGATAATACCTTA+TGG - chr8_1:66080554-66080573 Msa1208140:intron 30.0%
TTCCTAATGAAATCCATCAT+AGG + chr8_1:66080610-66080629 None:intergenic 30.0%
GATTTCATTAGGAATTTACG+TGG - chr8_1:66080616-66080635 Msa1208140:intron 30.0%
GAACAACAAAACCAACTCAT+CGG - chr8_1:66077616-66077635 Msa1208140:CDS 35.0%
TATAAGTTGTCCTTCATCAC+CGG + chr8_1:66078910-66078929 None:intergenic 35.0%
AGGACAACTTATAAGCATGT+TGG - chr8_1:66078917-66078936 Msa1208140:intron 35.0%
GCAAAGAACACAATGGAAAT+TGG - chr8_1:66078954-66078973 Msa1208140:intron 35.0%
AGGATAGATGAGTAATAAGG+TGG + chr8_1:66079046-66079065 None:intergenic 35.0%
TGACATGACTTGAAAACGAA+TGG + chr8_1:66079394-66079413 None:intergenic 35.0%
TGCCACATCATCAAATTAGA+TGG - chr8_1:66079424-66079443 Msa1208140:CDS 35.0%
!!! TGTGGTTTTGTCAAAAGATG+TGG - chr8_1:66079523-66079542 Msa1208140:intron 35.0%
GGAAATGTTTGATGCTTCTT+GGG - chr8_1:66079978-66079997 Msa1208140:intron 35.0%
GAAATGTTTGATGCTTCTTG+GGG - chr8_1:66079979-66079998 Msa1208140:intron 35.0%
TATCTACTCGACAATTCATC+CGG + chr8_1:66080028-66080047 None:intergenic 35.0%
GTCTCTCTCTTATTAGGTAT+TGG - chr8_1:66080135-66080154 Msa1208140:intron 35.0%
!! CTCTTATTAGGTATTGGCTT+TGG - chr8_1:66080141-66080160 Msa1208140:intron 35.0%
! TTGCTCACAAGATTGACTTT+AGG - chr8_1:66080218-66080237 Msa1208140:intron 35.0%
GAAGGAGTTCATCAAGAAAA+GGG + chr8_1:66080258-66080277 None:intergenic 35.0%
TGAAGGAGTTCATCAAGAAA+AGG + chr8_1:66080259-66080278 None:intergenic 35.0%
GAAGCAAACATACATCTTGA+AGG + chr8_1:66080276-66080295 None:intergenic 35.0%
!!! GACGTTTGACTTTGTTTTTG+TGG - chr8_1:66080462-66080481 Msa1208140:intron 35.0%
ACTACTTAAACTATCACGTG+AGG - chr8_1:66080500-66080519 Msa1208140:intron 35.0%
GAGGATGATTGATCTTGTTA+AGG - chr8_1:66080519-66080538 Msa1208140:intron 35.0%
GATTGATCTTGTTAAGGTTG+GGG - chr8_1:66080525-66080544 Msa1208140:intron 35.0%
ATTGATCTTGTTAAGGTTGG+GGG - chr8_1:66080526-66080545 Msa1208140:intron 35.0%
TACGATAATACCTTATGGAG+TGG - chr8_1:66080559-66080578 Msa1208140:intron 35.0%
!! CACCTATGATGGATTTCATT+AGG - chr8_1:66080605-66080624 Msa1208140:intron 35.0%
GATAAAGTGCATCACTCTGA+AGG + chr8_1:66077669-66077688 None:intergenic 40.0%
GACAACTTTGTTGACAACCT+TGG - chr8_1:66078016-66078035 Msa1208140:intron 40.0%
! GGTGTTTTTCTGTCATCTCA+CGG + chr8_1:66078275-66078294 None:intergenic 40.0%
AGATGACAGAAAAACACCCT+CGG - chr8_1:66078277-66078296 Msa1208140:intron 40.0%
ACAACGTATGATCTTACCGA+GGG + chr8_1:66078296-66078315 None:intergenic 40.0%
AACAACGTATGATCTTACCG+AGG + chr8_1:66078297-66078316 None:intergenic 40.0%
!!! CTTTTTTAAAGTGGGTGGAG+TGG - chr8_1:66078431-66078450 Msa1208140:intron 40.0%
ATAAGTTGTCCTTCATCACC+GGG + chr8_1:66078909-66078928 None:intergenic 40.0%
ATGGAAATTGGTGTGTACAC+TGG - chr8_1:66078966-66078985 Msa1208140:intron 40.0%
TTCCATCTGATGGAAAGGTA+AGG - chr8_1:66079018-66079037 Msa1208140:intron 40.0%
AAAATAGGAGGACCAAGTTG+CGG + chr8_1:66079188-66079207 None:intergenic 40.0%
!! ACTAAAAGCATCTCCAAAGC+CGG - chr8_1:66079861-66079880 Msa1208140:intron 40.0%
! TATTGAACGTTTTCCGGCTT+TGG + chr8_1:66079877-66079896 None:intergenic 40.0%
AGCCGGAAAACGTTCAATAT+TGG - chr8_1:66079878-66079897 Msa1208140:intron 40.0%
CGGAAATGTTTGATGCTTCT+TGG - chr8_1:66079977-66079996 Msa1208140:intron 40.0%
TCGAGTAGATAGATCAGATC+CGG - chr8_1:66080037-66080056 Msa1208140:intron 40.0%
AGTCGAGAATACTATGAGCT+GGG - chr8_1:66080169-66080188 Msa1208140:intron 40.0%
ACTGCCCATGATTGAAAAAG+CGG - chr8_1:66080192-66080211 Msa1208140:intron 40.0%
!!! ACTCCCGCTTTTTCAATCAT+GGG + chr8_1:66080199-66080218 None:intergenic 40.0%
!!! AACTCCCGCTTTTTCAATCA+TGG + chr8_1:66080200-66080219 None:intergenic 40.0%
! CACAAGATTGACTTTAGGCA+AGG - chr8_1:66080223-66080242 Msa1208140:intron 40.0%
CTAAGTTTGCGAAACATGCA+TGG + chr8_1:66080369-66080388 None:intergenic 40.0%
TGTCAACTCTCTATAGCTGA+TGG - chr8_1:66080691-66080710 Msa1208140:CDS 40.0%
GTCAACTCTCTATAGCTGAT+GGG - chr8_1:66080692-66080711 Msa1208140:CDS 40.0%
!! TTCAAGCAAGGGTGTTCTCT+TGG + chr8_1:66078246-66078265 None:intergenic 45.0%
AAGAGAACACCCTTGCTTGA+AGG - chr8_1:66078245-66078264 Msa1208140:intron 45.0%
AGGAACCATATGGCTATACC+CGG - chr8_1:66078888-66078907 Msa1208140:intron 45.0%
TCCATCAGATGGAAGAGCAA+GGG + chr8_1:66079012-66079031 None:intergenic 45.0%
TTCCATCAGATGGAAGAGCA+AGG + chr8_1:66079013-66079032 None:intergenic 45.0%
TGCTCTTCCATCTGATGGAA+AGG - chr8_1:66079013-66079032 Msa1208140:intron 45.0%
AGCCTTACCTTTCCATCAGA+TGG + chr8_1:66079023-66079042 None:intergenic 45.0%
GATGAGCGAGAATGAGAGTA+GGG + chr8_1:66079958-66079977 None:intergenic 45.0%
CTACTCTCATTCTCGCTCAT+CGG - chr8_1:66079957-66079976 Msa1208140:intron 45.0%
GAGTCGAGAATACTATGAGC+TGG - chr8_1:66080168-66080187 Msa1208140:intron 45.0%
CTGCCCATGATTGAAAAAGC+GGG - chr8_1:66080193-66080212 Msa1208140:intron 45.0%
TCATCAAGAAAAGGGAGAGC+AGG + chr8_1:66080250-66080269 None:intergenic 45.0%
GTTAAGGTTGGGGGACTAAT+AGG - chr8_1:66080535-66080554 Msa1208140:intron 45.0%
TACCTTATGGAGTGGATCAG+TGG - chr8_1:66080567-66080586 Msa1208140:intron 45.0%
TCCATCTGATGCACCTATGA+TGG - chr8_1:66080594-66080613 Msa1208140:intron 45.0%
TCCATCATAGGTGCATCAGA+TGG + chr8_1:66080598-66080617 None:intergenic 45.0%
! TTAGTTGATGCGGCGACATA+AGG + chr8_1:66080722-66080741 None:intergenic 45.0%
!!! AATAATAATTTTACATAAAT+TGG + chr8_1:66079127-66079146 None:intergenic 5.0%
GATTTGCGTCTCCGATGAGT+TGG + chr8_1:66077630-66077649 None:intergenic 50.0%
CATCACCGGGTATAGCCATA+TGG + chr8_1:66078896-66078915 None:intergenic 50.0%
ATGGCTATACCCGGTGATGA+AGG - chr8_1:66078897-66078916 Msa1208140:intron 50.0%
AGGAGAAACGGGTGAAGTTG+GGG + chr8_1:66079933-66079952 None:intergenic 50.0%
CAGGAGAAACGGGTGAAGTT+GGG + chr8_1:66079934-66079953 None:intergenic 50.0%
ACAGGAGAAACGGGTGAAGT+TGG + chr8_1:66079935-66079954 None:intergenic 50.0%
AGAGTAGGGACAGGAGAAAC+GGG + chr8_1:66079944-66079963 None:intergenic 50.0%
GAGAGTAGGGACAGGAGAAA+CGG + chr8_1:66079945-66079964 None:intergenic 50.0%
CGATGAGCGAGAATGAGAGT+AGG + chr8_1:66079959-66079978 None:intergenic 50.0%
GATGCTTCTTGGGGCTTCTT+TGG - chr8_1:66079988-66080007 Msa1208140:intron 50.0%
TTTGGCGAACGTGAAGTCAC+CGG - chr8_1:66080006-66080025 Msa1208140:intron 50.0%
AGATAGATCAGATCCGGACG+CGG - chr8_1:66080043-66080062 Msa1208140:CDS 50.0%
CTTATGGAGTGGATCAGTGG+CGG - chr8_1:66080570-66080589 Msa1208140:intron 50.0%
CACGGAGCTCCTTCAAGCAA+GGG + chr8_1:66078257-66078276 None:intergenic 55.0%
TCACGGAGCTCCTTCAAGCA+AGG + chr8_1:66078258-66078277 None:intergenic 55.0%
AGATGGAAGAGCAAGGGCAG+TGG + chr8_1:66079006-66079025 None:intergenic 55.0%
GCCCTTGCTCTTCCATCTGA+TGG - chr8_1:66079008-66079027 Msa1208140:intron 55.0%
ACGGGTGAAGTTGGGGCTTA+TGG + chr8_1:66079926-66079945 None:intergenic 55.0%
GCGAGAATGAGAGTAGGGAC+AGG + chr8_1:66079953-66079972 None:intergenic 55.0%
CGCCACTGATCCACTCCATA+AGG + chr8_1:66080572-66080591 None:intergenic 55.0%
GCTGTTGCTCCGCGGTGATA+CGG - chr8_1:66080065-66080084 Msa1208140:CDS 60.0%
AAAACATCTCCTGCCCCCGC+AGG + chr8_1:66080092-66080111 None:intergenic 60.0%
TCCGCGGTGATACGGACCTG+CGG - chr8_1:66080073-66080092 Msa1208140:CDS 65.0%
CCCGCAGGTCCGTATCACCG+CGG + chr8_1:66080077-66080096 None:intergenic 70.0%
CCGCGGTGATACGGACCTGC+GGG - chr8_1:66080074-66080093 Msa1208140:CDS 70.0%
CGCGGTGATACGGACCTGCG+GGG - chr8_1:66080075-66080094 Msa1208140:CDS 70.0%
GCGGTGATACGGACCTGCGG+GGG - chr8_1:66080076-66080095 Msa1208140:CDS 70.0%
TGATACGGACCTGCGGGGGC+AGG - chr8_1:66080080-66080099 Msa1208140:CDS 70.0%
CGCGGAGCAACAGCCGCGTC+CGG + chr8_1:66080059-66080078 None:intergenic 75.0%
CGGACGCGGCTGTTGCTCCG+CGG - chr8_1:66080057-66080076 Msa1208140:CDS 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 66077595 66080741 66077595 ID=Msa1208140;Name=Msa1208140
chr8_1 mRNA 66077595 66080741 66077595 ID=Msa1208140-mRNA-1;Parent=Msa1208140;Name=Msa1208140-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|1|1|5|0|248
chr8_1 exon 66080646 66080741 66080646 ID=Msa1208140-mRNA-1:exon:21733;Parent=Msa1208140-mRNA-1
chr8_1 exon 66080038 66080117 66080038 ID=Msa1208140-mRNA-1:exon:21732;Parent=Msa1208140-mRNA-1
chr8_1 exon 66079302 66079446 66079302 ID=Msa1208140-mRNA-1:exon:21731;Parent=Msa1208140-mRNA-1
chr8_1 exon 66078054 66078185 66078054 ID=Msa1208140-mRNA-1:exon:21730;Parent=Msa1208140-mRNA-1
chr8_1 exon 66077595 66077888 66077595 ID=Msa1208140-mRNA-1:exon:21729;Parent=Msa1208140-mRNA-1
chr8_1 CDS 66080646 66080741 66080646 ID=Msa1208140-mRNA-1:cds;Parent=Msa1208140-mRNA-1
chr8_1 CDS 66080038 66080117 66080038 ID=Msa1208140-mRNA-1:cds;Parent=Msa1208140-mRNA-1
chr8_1 CDS 66079302 66079446 66079302 ID=Msa1208140-mRNA-1:cds;Parent=Msa1208140-mRNA-1
chr8_1 CDS 66078054 66078185 66078054 ID=Msa1208140-mRNA-1:cds;Parent=Msa1208140-mRNA-1
chr8_1 CDS 66077595 66077888 66077595 ID=Msa1208140-mRNA-1:cds;Parent=Msa1208140-mRNA-1
Gene Sequence

>Msa1208140

ATGGCTATCAATAATGGAGAGGAACAACAAAACCAACTCATCGGAGACGCAAATCTTGCTCACAAGACTCTCCTTCAGAGTGATGCACTTTATCAATATATACTTGAAACAAGTGTGTTTCCAAGAGAACACCCTTGCTTGAAGGAGCTCCGTGAGATGACAGAAAAACACCCTCGGAACCATATGGCTATACCCGGTGATGAAGGACAACTTATAAGCATGTTGGTTAAGCTTATCAATGCAAAGAACACAATGGAAATTGGTGTGTACACTGGTTACTCTCTACTCTCCACTGCCCTTGCTCTTCCATCTGATGGAAAGGTATTGGCTTTGGATCTGAGTCGAGAATACTATGAGCTGGGACTGCCCATGATTGAAAAAGCGGGAGTTGCTCACAAGATTGACTTTAGGCAAGGACCTGCTCTCCCTTTTCTTGATGAACTCCTTCAAGATGAAAATAACAAAGGGACGTTTGACTTTGTTTTTGTGGATGCTGATAAGAATAACTACTTAAACTATCACGTGAGGATGATTGATCTTGTTAAGGTTGGGGGACTAATAGGATACGATAATACCTTATGGAGTGGATCAGTGGCGGTTCCATCTGATGCACCTATGATGGATTTCATTAGGAATTTACGTGGTTATGTGATTGAGTTCAACAAACATCTAGCTCAAGATTCAAGAATTGAGATTTGTCAACTCTCTATAGCTGATGGGATTACCTTATGTCGCCGCATCAACTAA

Protein sequence

>Msa1208140

MAINNGEEQQNQLIGDANLAHKTLLQSDALYQYILETSVFPREHPCLKELREMTEKHPRNHMAIPGDEGQLISMLVKLINAKNTMEIGVYTGYSLLSTALALPSDGKVLALDLSREYYELGLPMIEKAGVAHKIDFRQGPALPFLDELLQDENNKGTFDFVFVDADKNNYLNYHVRMIDLVKVGGLIGYDNTLWSGSVAVPSDAPMMDFIRNLRGYVIEFNKHLAQDSRIEICQLSIADGITLCRRIN*