Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394870 | XP_024629264.1 | 98.485 | 66 | 1 | 0 | 1 | 66 | 1 | 66 | 8.54e-39 | 138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394870 | sp|Q52K82|CML21_ARATH | 62.121 | 66 | 25 | 0 | 1 | 66 | 1 | 66 | 4.34e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394870 | G7LJD2 | 98.485 | 66 | 1 | 0 | 1 | 66 | 1 | 66 | 4.08e-39 | 138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1394870 | 0.816421 | 5.579767e-52 | -8.615850e-47 |
| Msa0026910 | Msa1394870 | 0.802081 | 6.643345e-49 | -8.615850e-47 |
| Msa0027390 | Msa1394870 | 0.808648 | 2.793934e-50 | -8.615850e-47 |
| Msa0032110 | Msa1394870 | 0.805715 | 1.167608e-49 | -8.615850e-47 |
| Msa0045790 | Msa1394870 | 0.804004 | 2.659884e-49 | -8.615850e-47 |
| Msa0046160 | Msa1394870 | 0.803821 | 2.902754e-49 | -8.615850e-47 |
| Msa0079400 | Msa1394870 | 0.842502 | 2.486406e-58 | -8.615850e-47 |
| Msa1348360 | Msa1394870 | 0.820068 | 8.336392e-53 | -8.615850e-47 |
| Msa1359040 | Msa1394870 | 0.809406 | 1.921948e-50 | -8.615850e-47 |
| Msa1372760 | Msa1394870 | 0.819243 | 1.286711e-52 | -8.615850e-47 |
| Msa1394870 | Msa1423880 | 0.821599 | 3.706946e-53 | -8.615850e-47 |
| Msa1394870 | Msa1424680 | 0.813977 | 1.947150e-51 | -8.615850e-47 |
| Msa1394870 | Msa1451620 | -0.801797 | 7.599412e-49 | -8.615850e-47 |
| Msa0626220 | Msa1394870 | 0.832671 | 8.275046e-56 | -8.615850e-47 |
| Msa0663250 | Msa1394870 | 0.806317 | 8.721957e-50 | -8.615850e-47 |
| Msa0667050 | Msa1394870 | 0.808518 | 2.978187e-50 | -8.615850e-47 |
| Msa0682550 | Msa1394870 | 0.831734 | 1.411119e-55 | -8.615850e-47 |
| Msa0693380 | Msa1394870 | 0.809299 | 2.026841e-50 | -8.615850e-47 |
| Msa0767220 | Msa1394870 | 0.805239 | 1.469323e-49 | -8.615850e-47 |
| Msa0832090 | Msa1394870 | 0.802493 | 5.466394e-49 | -8.615850e-47 |
| Msa0122590 | Msa1394870 | 0.822217 | 2.665411e-53 | -8.615850e-47 |
| Msa0123100 | Msa1394870 | 0.804881 | 1.746017e-49 | -8.615850e-47 |
| Msa0137570 | Msa1394870 | 0.805764 | 1.140125e-49 | -8.615850e-47 |
| Msa0165300 | Msa1394870 | 0.801915 | 7.185931e-49 | -8.615850e-47 |
| Msa0166870 | Msa1394870 | 0.803616 | 3.202728e-49 | -8.615850e-47 |
| Msa0173990 | Msa1394870 | 0.806158 | 9.423893e-50 | -8.615850e-47 |
| Msa0193890 | Msa1394870 | 0.804170 | 2.456713e-49 | -8.615850e-47 |
| Msa0197660 | Msa1394870 | 0.809631 | 1.719963e-50 | -8.615850e-47 |
| Msa0205850 | Msa1394870 | 0.815126 | 1.084355e-51 | -8.615850e-47 |
| Msa0206010 | Msa1394870 | 0.800280 | 1.552258e-48 | -8.615850e-47 |
| Msa0223410 | Msa1394870 | -0.803707 | 3.066012e-49 | -8.615850e-47 |
| Msa0237310 | Msa1394870 | 0.807755 | 4.328827e-50 | -8.615850e-47 |
| Msa1233500 | Msa1394870 | 0.804289 | 2.320368e-49 | -8.615850e-47 |
| Msa1233890 | Msa1394870 | 0.821312 | 4.317000e-53 | -8.615850e-47 |
| Msa1238930 | Msa1394870 | 0.803407 | 3.537112e-49 | -8.615850e-47 |
| Msa1276440 | Msa1394870 | 0.807786 | 4.263674e-50 | -8.615850e-47 |
| Msa1279210 | Msa1394870 | 0.824007 | 1.018959e-53 | -8.615850e-47 |
| Msa1305340 | Msa1394870 | 0.802201 | 6.275899e-49 | -8.615850e-47 |
| Msa1305350 | Msa1394870 | 0.804593 | 2.005374e-49 | -8.615850e-47 |
| Msa1306850 | Msa1394870 | 0.816680 | 4.880508e-52 | -8.615850e-47 |
| Msa1313150 | Msa1394870 | 0.823801 | 1.138915e-53 | -8.615850e-47 |
| Msa1314340 | Msa1394870 | 0.821709 | 3.495332e-53 | -8.615850e-47 |
| Msa1320740 | Msa1394870 | 0.801190 | 1.011989e-48 | -8.615850e-47 |
| Msa1328700 | Msa1394870 | 0.826451 | 2.694052e-54 | -8.615850e-47 |
| Msa1340020 | Msa1394870 | 0.800565 | 1.357725e-48 | -8.615850e-47 |
| Msa0365490 | Msa1394870 | 0.807726 | 4.391381e-50 | -8.615850e-47 |
| Msa0376350 | Msa1394870 | 0.807448 | 5.030663e-50 | -8.615850e-47 |
| Msa0376590 | Msa1394870 | 0.817197 | 3.736739e-52 | -8.615850e-47 |
| Msa0379640 | Msa1394870 | 0.810036 | 1.407024e-50 | -8.615850e-47 |
| Msa0387250 | Msa1394870 | 0.805152 | 1.532050e-49 | -8.615850e-47 |
| Msa0388960 | Msa1394870 | 0.832474 | 9.259956e-56 | -8.615850e-47 |
| Msa0426330 | Msa1394870 | 0.821906 | 3.147406e-53 | -8.615850e-47 |
| Msa0439970 | Msa1394870 | 0.807572 | 4.733203e-50 | -8.615850e-47 |
| Msa0466390 | Msa1394870 | 0.818505 | 1.893217e-52 | -8.615850e-47 |
| Msa1082500 | Msa1394870 | 0.844100 | 9.316609e-59 | -8.615850e-47 |
| Msa1087980 | Msa1394870 | 0.801414 | 9.106954e-49 | -8.615850e-47 |
| Msa1090260 | Msa1394870 | 0.802995 | 4.306175e-49 | -8.615850e-47 |
| Msa0239800 | Msa1394870 | 0.812416 | 4.287367e-51 | -8.615850e-47 |
| Msa0249100 | Msa1394870 | 0.807195 | 5.690968e-50 | -8.615850e-47 |
| Msa0274730 | Msa1394870 | 0.807610 | 4.647696e-50 | -8.615850e-47 |
| Msa0276920 | Msa1394870 | 0.804677 | 1.925749e-49 | -8.615850e-47 |
| Msa0277820 | Msa1394870 | 0.800711 | 1.267871e-48 | -8.615850e-47 |
| Msa0287310 | Msa1394870 | 0.820196 | 7.795236e-53 | -8.615850e-47 |
| Msa0315530 | Msa1394870 | 0.814634 | 1.394370e-51 | -8.615850e-47 |
| Msa0317510 | Msa1394870 | 0.820698 | 5.976805e-53 | -8.615850e-47 |
| Msa0317730 | Msa1394870 | 0.801762 | 7.725160e-49 | -8.615850e-47 |
| Msa0323180 | Msa1394870 | 0.809626 | 1.724056e-50 | -8.615850e-47 |
| Msa0325850 | Msa1394870 | 0.818665 | 1.740770e-52 | -8.615850e-47 |
| Msa0326110 | Msa1394870 | 0.801741 | 7.805387e-49 | -8.615850e-47 |
| Msa0333920 | Msa1394870 | 0.814716 | 1.337173e-51 | -8.615850e-47 |
| Msa0334040 | Msa1394870 | 0.828148 | 1.055986e-54 | -8.615850e-47 |
| Msa1113590 | Msa1394870 | 0.800392 | 1.472461e-48 | -8.615850e-47 |
| Msa1151910 | Msa1394870 | 0.805998 | 1.018022e-49 | -8.615850e-47 |
| Msa1165520 | Msa1394870 | 0.804111 | 2.527388e-49 | -8.615850e-47 |
| Msa1172670 | Msa1394870 | 0.822647 | 2.117737e-53 | -8.615850e-47 |
| Msa1199560 | Msa1394870 | 0.810211 | 1.290068e-50 | -8.615850e-47 |
| Msa1199620 | Msa1394870 | 0.871682 | 5.674941e-67 | -8.615850e-47 |
| Msa1204630 | Msa1394870 | 0.801563 | 8.487841e-49 | -8.615850e-47 |
| Msa0484780 | Msa1394870 | 0.836601 | 8.506824e-57 | -8.615850e-47 |
| Msa0516170 | Msa1394870 | 0.808838 | 2.544106e-50 | -8.615850e-47 |
| Msa0516370 | Msa1394870 | 0.807462 | 4.996892e-50 | -8.615850e-47 |
| Msa0575470 | Msa1394870 | 0.801837 | 7.457526e-49 | -8.615850e-47 |
| Msa0598460 | Msa1394870 | 0.806923 | 6.496929e-50 | -8.615850e-47 |
| Msa0881020 | Msa1394870 | 0.805060 | 1.602045e-49 | -8.615850e-47 |
| Msa0881030 | Msa1394870 | 0.800635 | 1.314173e-48 | -8.615850e-47 |
| Msa0908050 | Msa1394870 | 0.826665 | 2.395503e-54 | -8.615850e-47 |
| Msa0969520 | Msa1394870 | 0.806638 | 7.463442e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394870 | MtrunA17_Chr8g0369111 | 98.485 | 66 | 1 | 0 | 1 | 66 | 1 | 66 | 7.85e-43 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394870 | AT4G26470.2 | 62.121 | 66 | 25 | 0 | 1 | 66 | 1 | 66 | 1.73e-25 | 94.0 |
| Msa1394870 | AT4G26470.1 | 62.121 | 66 | 25 | 0 | 1 | 66 | 1 | 66 | 4.41e-25 | 93.2 |
| Msa1394870 | AT4G26470.3 | 61.194 | 67 | 26 | 0 | 1 | 67 | 64 | 130 | 1.56e-24 | 93.2 |
Find 28 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGAGTGTTCAAGATAATT+AGG | 0.220109 | tig0021897:+73485 | None:intergenic |
| AACCAAGCTTGAGGCTAAAA+TGG | 0.325884 | tig0021897:-72597 | Msa1394870:CDS |
| TATAGTGTTGAATGATTTCA+TGG | 0.344014 | tig0021897:+72538 | None:intergenic |
| AGATAATTAGGATGGTGTTT+TGG | 0.349727 | tig0021897:+73497 | None:intergenic |
| TTTGGCTTTGGTCTATGTTT+GGG | 0.358639 | tig0021897:+73515 | None:intergenic |
| ACGCACTTTGGTTGATTGAT+TGG | 0.424555 | tig0021897:-72675 | Msa1394870:five_prime_UTR |
| AGGGCCATCTTTGAGCAGTT+TGG | 0.430873 | tig0021897:-72473 | Msa1394870:intron |
| GGATAGAAATTAGTGAAGAG+TGG | 0.465265 | tig0021897:+73430 | None:intergenic |
| ATGGGAGGTGCAATGGGAAA+GGG | 0.505177 | tig0021897:-72650 | Msa1394870:CDS |
| TTGGCAATGGGAGGTGCAAT+GGG | 0.506874 | tig0021897:-72656 | Msa1394870:exon |
| AATGGGAGGTGCAATGGGAA+AGG | 0.510880 | tig0021897:-72651 | Msa1394870:CDS |
| ATTGGCAATGGGAGGTGCAA+TGG | 0.512757 | tig0021897:-72657 | Msa1394870:exon |
| TTTGGTTGATTGATTGGCAA+TGG | 0.515737 | tig0021897:-72669 | Msa1394870:exon |
| AACGTTTCTGAGACGCACTT+TGG | 0.516858 | tig0021897:-72687 | Msa1394870:five_prime_UTR |
| TTGGTTGATTGATTGGCAAT+GGG | 0.518035 | tig0021897:-72668 | Msa1394870:exon |
| CAACTTATACATACATATCA+AGG | 0.518908 | tig0021897:-73404 | Msa1394870:intron |
| CTTGATATGTATGTATAAGT+TGG | 0.520736 | tig0021897:+73405 | None:intergenic |
| ATGAGAGCTTCAGAAAATGC+AGG | 0.530176 | tig0021897:-72493 | Msa1394870:CDS |
| CCTACCAAACTGCTCAAAGA+TGG | 0.539084 | tig0021897:+72469 | None:intergenic |
| ATATGTATGTATAAGTTGGT+AGG | 0.586729 | tig0021897:+73409 | None:intergenic |
| GTTGATTGATTGGCAATGGG+AGG | 0.595620 | tig0021897:-72665 | Msa1394870:exon |
| TGGTTGAAGCAATGCAACGG+AGG | 0.619505 | tig0021897:-72577 | Msa1394870:CDS |
| GGTTGAAGCAATGCAACGGA+GGG | 0.624758 | tig0021897:-72576 | Msa1394870:CDS |
| AGTGTTCAAGATAATTAGGA+TGG | 0.626393 | tig0021897:+73489 | None:intergenic |
| TGAGAGCTTCAGAAAATGCA+GGG | 0.640702 | tig0021897:-72492 | Msa1394870:CDS |
| AAATGGTTGAAGCAATGCAA+CGG | 0.650809 | tig0021897:-72580 | Msa1394870:CDS |
| GGTGGCAGAAACCAAGCTTG+AGG | 0.656380 | tig0021897:-72606 | Msa1394870:CDS |
| ATGCAACGGAGGGAATGTCA+AGG | 0.680566 | tig0021897:-72566 | Msa1394870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAATAATATAATGAAAT+TGG | + | tig0021897:72566-72585 | None:intergenic | 10.0% |
| !! | AATCAATAATATAATGAAAT+TGG | + | tig0021897:72566-72585 | None:intergenic | 10.0% |
| !! | AATTAGATTCTTAATCATTA+GGG | - | tig0021897:72657-72676 | Msa1394870:exon | 15.0% |
| !!! | AATTTATGGTTTTGTAAAAT+TGG | - | tig0021897:73417-73436 | Msa1394870:five_prime_UTR | 15.0% |
| !! | CTGATATAAATATAGTTTAT+TGG | - | tig0021897:73472-73491 | Msa1394870:five_prime_UTR | 15.0% |
| !! | AATTAGATTCTTAATCATTA+GGG | - | tig0021897:72657-72676 | Msa1394870:exon | 15.0% |
| !!! | AATTTATGGTTTTGTAAAAT+TGG | - | tig0021897:73417-73436 | Msa1394870:five_prime_UTR | 15.0% |
| !! | CTGATATAAATATAGTTTAT+TGG | - | tig0021897:73472-73491 | Msa1394870:five_prime_UTR | 15.0% |
| !! | GAATTAGATTCTTAATCATT+AGG | - | tig0021897:72656-72675 | Msa1394870:exon | 20.0% |
| !! | ATTCCATAATAGATAGTAAA+TGG | + | tig0021897:72970-72989 | None:intergenic | 20.0% |
| !! | GAATTAGATTCTTAATCATT+AGG | - | tig0021897:72656-72675 | Msa1394870:exon | 20.0% |
| !! | ATTCCATAATAGATAGTAAA+TGG | + | tig0021897:72970-72989 | None:intergenic | 20.0% |
| !!! | ATATGTATGTATAAGTTGGT+AGG | + | tig0021897:72449-72468 | None:intergenic | 25.0% |
| ! | CTTGATATGTATGTATAAGT+TGG | + | tig0021897:72453-72472 | None:intergenic | 25.0% |
| ! | CAACTTATACATACATATCA+AGG | - | tig0021897:72451-72470 | Msa1394870:intron | 25.0% |
| !!! | ATTATTGATTCTTTGCTCAA+CGG | - | tig0021897:72576-72595 | Msa1394870:CDS | 25.0% |
| !! | TTTTGGATTGTCCTTTAATT+TGG | - | tig0021897:72769-72788 | Msa1394870:intron | 25.0% |
| !!! | TTCACTTTTCAAATGAACTT+AGG | - | tig0021897:73066-73085 | Msa1394870:intron | 25.0% |
| !! | TATAGTGTTGAATGATTTCA+TGG | + | tig0021897:73320-73339 | None:intergenic | 25.0% |
| !!! | CATCAATTTTTGGGAATTTT+AGG | + | tig0021897:73345-73364 | None:intergenic | 25.0% |
| !!! | ATATGTATGTATAAGTTGGT+AGG | + | tig0021897:72449-72468 | None:intergenic | 25.0% |
| ! | CTTGATATGTATGTATAAGT+TGG | + | tig0021897:72453-72472 | None:intergenic | 25.0% |
| ! | CAACTTATACATACATATCA+AGG | - | tig0021897:72451-72470 | Msa1394870:intron | 25.0% |
| !!! | ATTATTGATTCTTTGCTCAA+CGG | - | tig0021897:72576-72595 | Msa1394870:CDS | 25.0% |
| !! | TTTTGGATTGTCCTTTAATT+TGG | - | tig0021897:72769-72788 | Msa1394870:intron | 25.0% |
| !!! | TTCACTTTTCAAATGAACTT+AGG | - | tig0021897:73066-73085 | Msa1394870:intron | 25.0% |
| !! | TATAGTGTTGAATGATTTCA+TGG | + | tig0021897:73320-73339 | None:intergenic | 25.0% |
| !!! | CATCAATTTTTGGGAATTTT+AGG | + | tig0021897:73345-73364 | None:intergenic | 25.0% |
| ! | AGATAATTAGGATGGTGTTT+TGG | + | tig0021897:72361-72380 | None:intergenic | 30.0% |
| AGTGTTCAAGATAATTAGGA+TGG | + | tig0021897:72369-72388 | None:intergenic | 30.0% | |
| TGTGAGTGTTCAAGATAATT+AGG | + | tig0021897:72373-72392 | None:intergenic | 30.0% | |
| CCTCAACTTTATTCAACAAA+TGG | + | tig0021897:72627-72646 | None:intergenic | 30.0% | |
| ! | CCATTTGTTGAATAAAGTTG+AGG | - | tig0021897:72624-72643 | Msa1394870:CDS | 30.0% |
| TTTGTTGAATAAAGTTGAGG+AGG | - | tig0021897:72627-72646 | Msa1394870:CDS | 30.0% | |
| GCATGTAATTCACATAAAGT+AGG | - | tig0021897:72736-72755 | Msa1394870:intron | 30.0% | |
| !! | AAGTAGGTCTTGTGTATTTT+TGG | - | tig0021897:72752-72771 | Msa1394870:intron | 30.0% |
| !! | CTTTAATTTGGCAGAAATTG+CGG | - | tig0021897:72781-72800 | Msa1394870:intron | 30.0% |
| TGAGTTTCAGAAAATTACAG+CGG | - | tig0021897:72858-72877 | Msa1394870:intron | 30.0% | |
| AGTTTGACAGAATCAGATTT+CGG | + | tig0021897:72921-72940 | None:intergenic | 30.0% | |
| GCACCATTTACTATCTATTA+TGG | - | tig0021897:72964-72983 | Msa1394870:intron | 30.0% | |
| ! | TGAATCACCCAAAAAGTTTT+GGG | - | tig0021897:73228-73247 | Msa1394870:intron | 30.0% |
| ! | TGAAGCTCTCATCAATTTTT+GGG | + | tig0021897:73354-73373 | None:intergenic | 30.0% |
| GGTAGGTTTCTACAAATTTA+TGG | - | tig0021897:73403-73422 | Msa1394870:intron | 30.0% | |
| ! | AGATAATTAGGATGGTGTTT+TGG | + | tig0021897:72361-72380 | None:intergenic | 30.0% |
| AGTGTTCAAGATAATTAGGA+TGG | + | tig0021897:72369-72388 | None:intergenic | 30.0% | |
| TGTGAGTGTTCAAGATAATT+AGG | + | tig0021897:72373-72392 | None:intergenic | 30.0% | |
| CCTCAACTTTATTCAACAAA+TGG | + | tig0021897:72627-72646 | None:intergenic | 30.0% | |
| ! | CCATTTGTTGAATAAAGTTG+AGG | - | tig0021897:72624-72643 | Msa1394870:CDS | 30.0% |
| TTTGTTGAATAAAGTTGAGG+AGG | - | tig0021897:72627-72646 | Msa1394870:CDS | 30.0% | |
| GCATGTAATTCACATAAAGT+AGG | - | tig0021897:72736-72755 | Msa1394870:intron | 30.0% | |
| !! | AAGTAGGTCTTGTGTATTTT+TGG | - | tig0021897:72752-72771 | Msa1394870:intron | 30.0% |
| !! | CTTTAATTTGGCAGAAATTG+CGG | - | tig0021897:72781-72800 | Msa1394870:intron | 30.0% |
| TGAGTTTCAGAAAATTACAG+CGG | - | tig0021897:72858-72877 | Msa1394870:intron | 30.0% | |
| AGTTTGACAGAATCAGATTT+CGG | + | tig0021897:72921-72940 | None:intergenic | 30.0% | |
| GCACCATTTACTATCTATTA+TGG | - | tig0021897:72964-72983 | Msa1394870:intron | 30.0% | |
| ! | TGAATCACCCAAAAAGTTTT+GGG | - | tig0021897:73228-73247 | Msa1394870:intron | 30.0% |
| ! | TGAAGCTCTCATCAATTTTT+GGG | + | tig0021897:73354-73373 | None:intergenic | 30.0% |
| GGTAGGTTTCTACAAATTTA+TGG | - | tig0021897:73403-73422 | Msa1394870:intron | 30.0% | |
| !! | TTTGGCTTTGGTCTATGTTT+GGG | + | tig0021897:72343-72362 | None:intergenic | 35.0% |
| !!! | TTTTGGCTTTGGTCTATGTT+TGG | + | tig0021897:72344-72363 | None:intergenic | 35.0% |
| GGATAGAAATTAGTGAAGAG+TGG | + | tig0021897:72428-72447 | None:intergenic | 35.0% | |
| CGCAATTTCTGCCAAATTAA+AGG | + | tig0021897:72783-72802 | None:intergenic | 35.0% | |
| ! | AGCTTTTGCCAAAATGATGA+TGG | + | tig0021897:72811-72830 | None:intergenic | 35.0% |
| TGACACTCAAGATAGATCAT+AGG | - | tig0021897:73035-73054 | Msa1394870:intron | 35.0% | |
| TCAAATGAACTTAGGCATTC+AGG | - | tig0021897:73074-73093 | Msa1394870:intron | 35.0% | |
| TCGCTAATTACGCAAAGATA+TGG | + | tig0021897:73105-73124 | None:intergenic | 35.0% | |
| ! | ATCAATTGTTGTTGCTTACG+AGG | - | tig0021897:73136-73155 | Msa1394870:intron | 35.0% |
| TTTGGTTGATTGATTGGCAA+TGG | - | tig0021897:73186-73205 | Msa1394870:intron | 35.0% | |
| TTGGTTGATTGATTGGCAAT+GGG | - | tig0021897:73187-73206 | Msa1394870:intron | 35.0% | |
| ! | GTGAATCACCCAAAAAGTTT+TGG | - | tig0021897:73227-73246 | Msa1394870:intron | 35.0% |
| AAATGGTTGAAGCAATGCAA+CGG | - | tig0021897:73275-73294 | Msa1394870:intron | 35.0% | |
| ! | CTGAAGCTCTCATCAATTTT+TGG | + | tig0021897:73355-73374 | None:intergenic | 35.0% |
| TTGGCCTGAATTTATACACT+AGG | - | tig0021897:73491-73510 | Msa1394870:five_prime_UTR | 35.0% | |
| TGGCCTGAATTTATACACTA+GGG | - | tig0021897:73492-73511 | Msa1394870:five_prime_UTR | 35.0% | |
| TGACCCTAGTGTATAAATTC+AGG | + | tig0021897:73498-73517 | None:intergenic | 35.0% | |
| !! | TTTGGCTTTGGTCTATGTTT+GGG | + | tig0021897:72343-72362 | None:intergenic | 35.0% |
| !!! | TTTTGGCTTTGGTCTATGTT+TGG | + | tig0021897:72344-72363 | None:intergenic | 35.0% |
| GGATAGAAATTAGTGAAGAG+TGG | + | tig0021897:72428-72447 | None:intergenic | 35.0% | |
| CGCAATTTCTGCCAAATTAA+AGG | + | tig0021897:72783-72802 | None:intergenic | 35.0% | |
| ! | AGCTTTTGCCAAAATGATGA+TGG | + | tig0021897:72811-72830 | None:intergenic | 35.0% |
| TGACACTCAAGATAGATCAT+AGG | - | tig0021897:73035-73054 | Msa1394870:intron | 35.0% | |
| TCAAATGAACTTAGGCATTC+AGG | - | tig0021897:73074-73093 | Msa1394870:intron | 35.0% | |
| TCGCTAATTACGCAAAGATA+TGG | + | tig0021897:73105-73124 | None:intergenic | 35.0% | |
| ! | ATCAATTGTTGTTGCTTACG+AGG | - | tig0021897:73136-73155 | Msa1394870:intron | 35.0% |
| TTTGGTTGATTGATTGGCAA+TGG | - | tig0021897:73186-73205 | Msa1394870:intron | 35.0% | |
| TTGGTTGATTGATTGGCAAT+GGG | - | tig0021897:73187-73206 | Msa1394870:intron | 35.0% | |
| ! | GTGAATCACCCAAAAAGTTT+TGG | - | tig0021897:73227-73246 | Msa1394870:intron | 35.0% |
| AAATGGTTGAAGCAATGCAA+CGG | - | tig0021897:73275-73294 | Msa1394870:intron | 35.0% | |
| ! | CTGAAGCTCTCATCAATTTT+TGG | + | tig0021897:73355-73374 | None:intergenic | 35.0% |
| TTGGCCTGAATTTATACACT+AGG | - | tig0021897:73491-73510 | Msa1394870:five_prime_UTR | 35.0% | |
| TGGCCTGAATTTATACACTA+GGG | - | tig0021897:73492-73511 | Msa1394870:five_prime_UTR | 35.0% | |
| TGACCCTAGTGTATAAATTC+AGG | + | tig0021897:73498-73517 | None:intergenic | 35.0% | |
| !!! | TTAGGATGGTGTTTTGGCTT+TGG | + | tig0021897:72355-72374 | None:intergenic | 40.0% |
| AGCTACACTTAGTGCATGTT+TGG | - | tig0021897:72827-72846 | Msa1394870:intron | 40.0% | |
| TCACCGTGAATCCAAATCAA+GGG | - | tig0021897:72940-72959 | Msa1394870:intron | 40.0% | |
| ACGCACTTTGGTTGATTGAT+TGG | - | tig0021897:73180-73199 | Msa1394870:intron | 40.0% | |
| !!! | ATCACCCAAAAAGTTTTGGG+TGG | - | tig0021897:73231-73250 | Msa1394870:intron | 40.0% |
| ! | TCTGCCACCCAAAACTTTTT+GGG | + | tig0021897:73238-73257 | None:intergenic | 40.0% |
| ! | TTCTGCCACCCAAAACTTTT+TGG | + | tig0021897:73239-73258 | None:intergenic | 40.0% |
| AACCAAGCTTGAGGCTAAAA+TGG | - | tig0021897:73258-73277 | Msa1394870:intron | 40.0% | |
| !! | AACCATTTTAGCCTCAAGCT+TGG | + | tig0021897:73263-73282 | None:intergenic | 40.0% |
| ATGAGAGCTTCAGAAAATGC+AGG | - | tig0021897:73362-73381 | Msa1394870:intron | 40.0% | |
| TGAGAGCTTCAGAAAATGCA+GGG | - | tig0021897:73363-73382 | Msa1394870:intron | 40.0% | |
| !!! | TTAGGATGGTGTTTTGGCTT+TGG | + | tig0021897:72355-72374 | None:intergenic | 40.0% |
| AGCTACACTTAGTGCATGTT+TGG | - | tig0021897:72827-72846 | Msa1394870:intron | 40.0% | |
| TCACCGTGAATCCAAATCAA+GGG | - | tig0021897:72940-72959 | Msa1394870:intron | 40.0% | |
| ACGCACTTTGGTTGATTGAT+TGG | - | tig0021897:73180-73199 | Msa1394870:intron | 40.0% | |
| !!! | ATCACCCAAAAAGTTTTGGG+TGG | - | tig0021897:73231-73250 | Msa1394870:intron | 40.0% |
| ! | TCTGCCACCCAAAACTTTTT+GGG | + | tig0021897:73238-73257 | None:intergenic | 40.0% |
| ! | TTCTGCCACCCAAAACTTTT+TGG | + | tig0021897:73239-73258 | None:intergenic | 40.0% |
| AACCAAGCTTGAGGCTAAAA+TGG | - | tig0021897:73258-73277 | Msa1394870:intron | 40.0% | |
| !! | AACCATTTTAGCCTCAAGCT+TGG | + | tig0021897:73263-73282 | None:intergenic | 40.0% |
| ATGAGAGCTTCAGAAAATGC+AGG | - | tig0021897:73362-73381 | Msa1394870:intron | 40.0% | |
| TGAGAGCTTCAGAAAATGCA+GGG | - | tig0021897:73363-73382 | Msa1394870:intron | 40.0% | |
| ! | GCGGTGTACCATCATCATTT+TGG | - | tig0021897:72800-72819 | Msa1394870:intron | 45.0% |
| TCAGAAAATTACAGCGGCAG+TGG | - | tig0021897:72864-72883 | Msa1394870:intron | 45.0% | |
| CTCACCGTGAATCCAAATCA+AGG | - | tig0021897:72939-72958 | Msa1394870:intron | 45.0% | |
| CACCGTGAATCCAAATCAAG+GGG | - | tig0021897:72941-72960 | Msa1394870:intron | 45.0% | |
| ACCGTGAATCCAAATCAAGG+GGG | - | tig0021897:72942-72961 | Msa1394870:intron | 45.0% | |
| TAAATGGTGCCCCCTTGATT+TGG | + | tig0021897:72954-72973 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTACGAGGTACT+AGG | - | tig0021897:73143-73162 | Msa1394870:intron | 45.0% |
| !! | AACGTTTCTGAGACGCACTT+TGG | - | tig0021897:73168-73187 | Msa1394870:intron | 45.0% |
| GTTGATTGATTGGCAATGGG+AGG | - | tig0021897:73190-73209 | Msa1394870:intron | 45.0% | |
| CCTACCAAACTGCTCAAAGA+TGG | + | tig0021897:73389-73408 | None:intergenic | 45.0% | |
| CCATCTTTGAGCAGTTTGGT+AGG | - | tig0021897:73386-73405 | Msa1394870:intron | 45.0% | |
| ! | GCGGTGTACCATCATCATTT+TGG | - | tig0021897:72800-72819 | Msa1394870:intron | 45.0% |
| TCAGAAAATTACAGCGGCAG+TGG | - | tig0021897:72864-72883 | Msa1394870:intron | 45.0% | |
| CTCACCGTGAATCCAAATCA+AGG | - | tig0021897:72939-72958 | Msa1394870:intron | 45.0% | |
| CACCGTGAATCCAAATCAAG+GGG | - | tig0021897:72941-72960 | Msa1394870:intron | 45.0% | |
| ACCGTGAATCCAAATCAAGG+GGG | - | tig0021897:72942-72961 | Msa1394870:intron | 45.0% | |
| TAAATGGTGCCCCCTTGATT+TGG | + | tig0021897:72954-72973 | None:intergenic | 45.0% | |
| ! | GTTGTTGCTTACGAGGTACT+AGG | - | tig0021897:73143-73162 | Msa1394870:intron | 45.0% |
| !! | AACGTTTCTGAGACGCACTT+TGG | - | tig0021897:73168-73187 | Msa1394870:intron | 45.0% |
| GTTGATTGATTGGCAATGGG+AGG | - | tig0021897:73190-73209 | Msa1394870:intron | 45.0% | |
| CCTACCAAACTGCTCAAAGA+TGG | + | tig0021897:73389-73408 | None:intergenic | 45.0% | |
| CCATCTTTGAGCAGTTTGGT+AGG | - | tig0021897:73386-73405 | Msa1394870:intron | 45.0% | |
| !! | AAATAAATAAATAAATGAAA+TGG | + | tig0021897:72499-72518 | None:intergenic | 5.0% |
| !! | AAATAAATAAATAAATGAAA+TGG | + | tig0021897:72499-72518 | None:intergenic | 5.0% |
| !! | GCCCCCTTGATTTGGATTCA+CGG | + | tig0021897:72946-72965 | None:intergenic | 50.0% |
| ! | ATTGGCAATGGGAGGTGCAA+TGG | - | tig0021897:73198-73217 | Msa1394870:intron | 50.0% |
| ! | TTGGCAATGGGAGGTGCAAT+GGG | - | tig0021897:73199-73218 | Msa1394870:intron | 50.0% |
| ! | AATGGGAGGTGCAATGGGAA+AGG | - | tig0021897:73204-73223 | Msa1394870:intron | 50.0% |
| ! | ATGGGAGGTGCAATGGGAAA+GGG | - | tig0021897:73205-73224 | Msa1394870:intron | 50.0% |
| TGGTTGAAGCAATGCAACGG+AGG | - | tig0021897:73278-73297 | Msa1394870:intron | 50.0% | |
| GGTTGAAGCAATGCAACGGA+GGG | - | tig0021897:73279-73298 | Msa1394870:intron | 50.0% | |
| ATGCAACGGAGGGAATGTCA+AGG | - | tig0021897:73289-73308 | Msa1394870:intron | 50.0% | |
| AGGGCCATCTTTGAGCAGTT+TGG | - | tig0021897:73382-73401 | Msa1394870:intron | 50.0% | |
| !! | GCCCCCTTGATTTGGATTCA+CGG | + | tig0021897:72946-72965 | None:intergenic | 50.0% |
| ! | ATTGGCAATGGGAGGTGCAA+TGG | - | tig0021897:73198-73217 | Msa1394870:intron | 50.0% |
| ! | TTGGCAATGGGAGGTGCAAT+GGG | - | tig0021897:73199-73218 | Msa1394870:intron | 50.0% |
| ! | AATGGGAGGTGCAATGGGAA+AGG | - | tig0021897:73204-73223 | Msa1394870:intron | 50.0% |
| ! | ATGGGAGGTGCAATGGGAAA+GGG | - | tig0021897:73205-73224 | Msa1394870:intron | 50.0% |
| TGGTTGAAGCAATGCAACGG+AGG | - | tig0021897:73278-73297 | Msa1394870:intron | 50.0% | |
| GGTTGAAGCAATGCAACGGA+GGG | - | tig0021897:73279-73298 | Msa1394870:intron | 50.0% | |
| ATGCAACGGAGGGAATGTCA+AGG | - | tig0021897:73289-73308 | Msa1394870:intron | 50.0% | |
| AGGGCCATCTTTGAGCAGTT+TGG | - | tig0021897:73382-73401 | Msa1394870:intron | 50.0% | |
| GGTGGCAGAAACCAAGCTTG+AGG | - | tig0021897:73249-73268 | Msa1394870:intron | 55.0% | |
| GGTGGCAGAAACCAAGCTTG+AGG | - | tig0021897:73249-73268 | Msa1394870:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021897 | gene | 72336 | 73541 | 72336 | ID=Msa1394870;Name=Msa1394870 |
| tig0021897 | mRNA | 72336 | 73541 | 72336 | ID=Msa1394870-mRNA-1;Parent=Msa1394870;Name=Msa1394870-mRNA-1;_AED=0.41;_eAED=0.41;_QI=177|0.5|0.66|1|0.5|0.33|3|0|75 |
| tig0021897 | exon | 72336 | 72364 | 72336 | ID=Msa1394870-mRNA-1:exon:14585;Parent=Msa1394870-mRNA-1 |
| tig0021897 | exon | 72474 | 72712 | 72474 | ID=Msa1394870-mRNA-1:exon:14584;Parent=Msa1394870-mRNA-1 |
| tig0021897 | exon | 73405 | 73541 | 73405 | ID=Msa1394870-mRNA-1:exon:14583;Parent=Msa1394870-mRNA-1 |
| tig0021897 | five_prime_UTR | 73405 | 73541 | 73405 | ID=Msa1394870-mRNA-1:five_prime_utr;Parent=Msa1394870-mRNA-1 |
| tig0021897 | five_prime_UTR | 72673 | 72712 | 72673 | ID=Msa1394870-mRNA-1:five_prime_utr;Parent=Msa1394870-mRNA-1 |
| tig0021897 | CDS | 72474 | 72672 | 72474 | ID=Msa1394870-mRNA-1:cds;Parent=Msa1394870-mRNA-1 |
| tig0021897 | CDS | 72336 | 72364 | 72336 | ID=Msa1394870-mRNA-1:cds;Parent=Msa1394870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
