AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0323180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323180 MtrunA17_Chr2g0297021 100.000 111 0 0 1 111 1 111 9.43e-82 240
Msa0323180 MtrunA17_Chr3g0120311 89.899 99 10 0 13 111 15 113 5.51e-66 201
Msa0323180 MtrunA17_Chr4g0032031 83.051 59 9 1 1 59 1 58 8.80e-31 103
Msa0323180 MtrunA17_Chr4g0032041 97.826 46 1 0 66 111 1 46 5.79e-28 101
Msa0323180 MtrunA17_Chr7g0245591 40.952 105 56 2 11 111 50 152 8.64e-20 82.8
Msa0323180 MtrunA17_Chr7g0245591 36.957 92 54 2 18 107 258 347 1.07e-13 65.5
Msa0323180 MtrunA17_Chr8g0389111 44.792 96 47 2 16 107 65 158 1.47e-18 79.3
Msa0323180 MtrunA17_Chr8g0389111 36.842 95 56 2 18 110 256 348 3.77e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0323180 AT2G32260.1 84.158 101 15 1 12 111 31 131 3.22e-62 192
Msa0323180 AT2G32260.2 83.099 71 11 1 42 111 12 82 5.42e-41 137
Msa0323180 AT2G38670.1 41.584 101 53 2 11 107 50 148 4.23e-19 81.3
Msa0323180 AT2G38670.1 35.789 95 57 2 18 110 257 349 7.02e-14 66.6

Find 19 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAACACATATCTCCTTGT+TGG 0.358023 2_4:-26797216 Msa0323180:CDS
TTGATTACCCACGGCACATC+TGG 0.373662 2_4:+26795800 None:intergenic
CTTTGCTTGTTCAAGAGAAC+GGG 0.376996 2_4:+26797745 None:intergenic
CCATCAGCATAAACACGAAC+AGG 0.422644 2_4:+26797797 None:intergenic
ATTTACGATCTCTTTCACTT+TGG 0.443426 2_4:-26797773 Msa0323180:CDS
CCAACAAGGAGATATGTGTT+TGG 0.467300 2_4:+26797216 None:intergenic
CCTGTTCGTGTTTATGCTGA+TGG 0.469877 2_4:-26797797 Msa0323180:CDS
TGTGCCGTGGGTAATCAATC+AGG 0.490691 2_4:-26795795 Msa0323180:CDS
GAACAAGATGACTCTGAAGT+TGG 0.491101 2_4:-26797833 Msa0323180:CDS
TTCAATGTTCAGAGTCAAAA+CGG 0.491199 2_4:+26797884 None:intergenic
CTTGTTCAAGAGAACGGGCA+TGG 0.517970 2_4:+26797750 None:intergenic
TCTTTGCTTGTTCAAGAGAA+CGG 0.524315 2_4:+26797744 None:intergenic
TGAGATCACACACAAGTACA+AGG 0.560848 2_4:-26797181 Msa0323180:CDS
AAGTTATTCCAGATGTGCCG+TGG 0.587410 2_4:-26795808 Msa0323180:CDS
AACTCCTGATTGATTACCCA+CGG 0.589451 2_4:+26795791 None:intergenic
CAAGCATAAAATTGACTATG+TGG 0.611838 2_4:-26795762 Msa0323180:CDS
CATCACTGCAGCATCCAACA+AGG 0.622451 2_4:+26797202 None:intergenic
AGTTATTCCAGATGTGCCGT+GGG 0.663969 2_4:-26795807 Msa0323180:CDS
GAGATCACACACAAGTACAA+GGG 0.705592 2_4:-26797180 Msa0323180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAACATAAAAAAGA+GGG + chr2_4:26797174-26797193 None:intergenic 10.0%
!! AATAAATAAACATAAAAAAG+AGG + chr2_4:26797175-26797194 None:intergenic 10.0%
!! TTTATATGACTTATTTAAAT+TGG - chr2_4:26797747-26797766 Msa0323180:CDS 10.0%
!! ATAAATAAACATAAAAAAGA+GGG + chr2_4:26797174-26797193 None:intergenic 10.0%
!! AATAAATAAACATAAAAAAG+AGG + chr2_4:26797175-26797194 None:intergenic 10.0%
!! TTTATATGACTTATTTAAAT+TGG - chr2_4:26797747-26797766 Msa0323180:CDS 10.0%
!!! GTTTTTTGTTTTTGTTTTTA+AGG - chr2_4:26796166-26796185 Msa0323180:intron 15.0%
!!! TTTTTTTTGTTGTGTTTTTA+AGG - chr2_4:26796194-26796213 Msa0323180:intron 15.0%
!!! TTTTTGTTTTGTTGTTTTTA+AGG - chr2_4:26796224-26796243 Msa0323180:intron 15.0%
!!! TTGTTTTTAAGGTTTTTTTT+TGG - chr2_4:26796235-26796254 Msa0323180:intron 15.0%
!!! TGTTTTTAAGGTTTTTTTTT+GGG - chr2_4:26796236-26796255 Msa0323180:intron 15.0%
!! ATAATTTAACCAAAGAAAAA+AGG + chr2_4:26796606-26796625 None:intergenic 15.0%
!! TTTATTAATTATACAACAGT+TGG + chr2_4:26796790-26796809 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG - chr2_4:26797646-26797665 Msa0323180:intron 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG + chr2_4:26797689-26797708 None:intergenic 15.0%
!!! GTTTTTTGTTTTTGTTTTTA+AGG - chr2_4:26796166-26796185 Msa0323180:intron 15.0%
!!! TTTTTTTTGTTGTGTTTTTA+AGG - chr2_4:26796194-26796213 Msa0323180:intron 15.0%
!!! TTTTTGTTTTGTTGTTTTTA+AGG - chr2_4:26796224-26796243 Msa0323180:intron 15.0%
!!! TTGTTTTTAAGGTTTTTTTT+TGG - chr2_4:26796235-26796254 Msa0323180:intron 15.0%
!!! TGTTTTTAAGGTTTTTTTTT+GGG - chr2_4:26796236-26796255 Msa0323180:intron 15.0%
!! ATAATTTAACCAAAGAAAAA+AGG + chr2_4:26796606-26796625 None:intergenic 15.0%
!! TTTATTAATTATACAACAGT+TGG + chr2_4:26796790-26796809 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG - chr2_4:26797646-26797665 Msa0323180:intron 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG + chr2_4:26797689-26797708 None:intergenic 15.0%
!! AAAAAAACAAGAAACAAAAG+AGG - chr2_4:26795755-26795774 Msa0323180:CDS 20.0%
!! AAAATGAAATTGAGAAAGAT+GGG + chr2_4:26796042-26796061 None:intergenic 20.0%
!! AAAAATGAAATTGAGAAAGA+TGG + chr2_4:26796043-26796062 None:intergenic 20.0%
!! GGACTAAATATCATAAAAAA+GGG + chr2_4:26796079-26796098 None:intergenic 20.0%
!! TGGACTAAATATCATAAAAA+AGG + chr2_4:26796080-26796099 None:intergenic 20.0%
!! AAACCCAAAAGAAAAAAAAT+GGG + chr2_4:26796105-26796124 None:intergenic 20.0%
!! TAAAAATCCTAATTGCAAAT+GGG + chr2_4:26796318-26796337 None:intergenic 20.0%
!! ATAAAAATCCTAATTGCAAA+TGG + chr2_4:26796319-26796338 None:intergenic 20.0%
!!! ATTTGCAATTAGGATTTTTA+TGG - chr2_4:26796318-26796337 Msa0323180:intron 20.0%
!!! AATTAGGATTTTTATGGTTT+TGG - chr2_4:26796324-26796343 Msa0323180:intron 20.0%
!!! TTTTGTTGTTTGTTAATTGA+AGG - chr2_4:26796447-26796466 Msa0323180:intron 20.0%
!!! TTTCTTTTTCCTTTTTTCTT+TGG - chr2_4:26796594-26796613 Msa0323180:intron 20.0%
!!! CTATTATAGGTTTTACATTT+CGG - chr2_4:26796978-26796997 Msa0323180:intron 20.0%
!!! GAAATTTTTCATGTTATAAC+AGG + chr2_4:26797244-26797263 None:intergenic 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG + chr2_4:26797802-26797821 None:intergenic 20.0%
!! AAAAAAACAAGAAACAAAAG+AGG - chr2_4:26795755-26795774 Msa0323180:CDS 20.0%
!! AAAATGAAATTGAGAAAGAT+GGG + chr2_4:26796042-26796061 None:intergenic 20.0%
!! AAAAATGAAATTGAGAAAGA+TGG + chr2_4:26796043-26796062 None:intergenic 20.0%
!! GGACTAAATATCATAAAAAA+GGG + chr2_4:26796079-26796098 None:intergenic 20.0%
!! TGGACTAAATATCATAAAAA+AGG + chr2_4:26796080-26796099 None:intergenic 20.0%
!! AAACCCAAAAGAAAAAAAAT+GGG + chr2_4:26796105-26796124 None:intergenic 20.0%
!! TAAAAATCCTAATTGCAAAT+GGG + chr2_4:26796318-26796337 None:intergenic 20.0%
!! ATAAAAATCCTAATTGCAAA+TGG + chr2_4:26796319-26796338 None:intergenic 20.0%
!!! ATTTGCAATTAGGATTTTTA+TGG - chr2_4:26796318-26796337 Msa0323180:intron 20.0%
!!! AATTAGGATTTTTATGGTTT+TGG - chr2_4:26796324-26796343 Msa0323180:intron 20.0%
!!! TTTTGTTGTTTGTTAATTGA+AGG - chr2_4:26796447-26796466 Msa0323180:intron 20.0%
!!! TTTCTTTTTCCTTTTTTCTT+TGG - chr2_4:26796594-26796613 Msa0323180:intron 20.0%
!!! CTATTATAGGTTTTACATTT+CGG - chr2_4:26796978-26796997 Msa0323180:intron 20.0%
!!! GAAATTTTTCATGTTATAAC+AGG + chr2_4:26797244-26797263 None:intergenic 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG + chr2_4:26797802-26797821 None:intergenic 20.0%
! TGAAATGAAGCAAAAGAAAA+AGG + chr2_4:26795995-26796014 None:intergenic 25.0%
!!! AACCCCATTTTTTTTCTTTT+GGG - chr2_4:26796099-26796118 Msa0323180:intron 25.0%
! AACCCAAAAGAAAAAAAATG+GGG + chr2_4:26796104-26796123 None:intergenic 25.0%
! CAAACCCAAAAGAAAAAAAA+TGG + chr2_4:26796106-26796125 None:intergenic 25.0%
!!! TTTTTTTCTTTTGGGTTTGT+TGG - chr2_4:26796107-26796126 Msa0323180:intron 25.0%
! AAAAAATTGAAGAGTTTGTG+CGG - chr2_4:26796807-26796826 Msa0323180:intron 25.0%
! TAATAGATTGATGAAGTGAA+CGG - chr2_4:26797389-26797408 Msa0323180:intron 25.0%
! AAAAGTAAACACGAGATTAT+AGG - chr2_4:26797427-26797446 Msa0323180:intron 25.0%
! ATTATGTCTGGTCAAAATAT+TGG - chr2_4:26797572-26797591 Msa0323180:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG - chr2_4:26797601-26797620 Msa0323180:intron 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG - chr2_4:26797649-26797668 Msa0323180:intron 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG - chr2_4:26797650-26797669 Msa0323180:intron 25.0%
! TTACTTATTTGCTTTCACTA+TGG - chr2_4:26797815-26797834 Msa0323180:CDS 25.0%
! TGAAATGAAGCAAAAGAAAA+AGG + chr2_4:26795995-26796014 None:intergenic 25.0%
!!! AACCCCATTTTTTTTCTTTT+GGG - chr2_4:26796099-26796118 Msa0323180:intron 25.0%
! AACCCAAAAGAAAAAAAATG+GGG + chr2_4:26796104-26796123 None:intergenic 25.0%
! CAAACCCAAAAGAAAAAAAA+TGG + chr2_4:26796106-26796125 None:intergenic 25.0%
!!! TTTTTTTCTTTTGGGTTTGT+TGG - chr2_4:26796107-26796126 Msa0323180:intron 25.0%
! AAAAAATTGAAGAGTTTGTG+CGG - chr2_4:26796807-26796826 Msa0323180:intron 25.0%
! TAATAGATTGATGAAGTGAA+CGG - chr2_4:26797389-26797408 Msa0323180:intron 25.0%
! AAAAGTAAACACGAGATTAT+AGG - chr2_4:26797427-26797446 Msa0323180:intron 25.0%
! ATTATGTCTGGTCAAAATAT+TGG - chr2_4:26797572-26797591 Msa0323180:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG - chr2_4:26797601-26797620 Msa0323180:intron 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG - chr2_4:26797649-26797668 Msa0323180:intron 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG - chr2_4:26797650-26797669 Msa0323180:intron 25.0%
! TTACTTATTTGCTTTCACTA+TGG - chr2_4:26797815-26797834 Msa0323180:CDS 25.0%
TTCAATGTTCAGAGTCAAAA+CGG + chr2_4:26795808-26795827 None:intergenic 30.0%
ATTTACGATCTCTTTCACTT+TGG - chr2_4:26795916-26795935 Msa0323180:intron 30.0%
ATGAAGCAAAAGAAAAAGGA+GGG + chr2_4:26795991-26796010 None:intergenic 30.0%
AATGAAGCAAAAGAAAAAGG+AGG + chr2_4:26795992-26796011 None:intergenic 30.0%
CAAAAGAAAAAAAATGGGGT+TGG + chr2_4:26796100-26796119 None:intergenic 30.0%
!!! CAACCCCATTTTTTTTCTTT+TGG - chr2_4:26796098-26796117 Msa0323180:intron 30.0%
!!! TTGGGTGTTGTTTATGATTT+TGG - chr2_4:26796254-26796273 Msa0323180:intron 30.0%
TTGATTTCCCATTTGCAATT+AGG - chr2_4:26796308-26796327 Msa0323180:intron 30.0%
!! TGATGAAAGTGTCTATGATT+TGG - chr2_4:26796349-26796368 Msa0323180:intron 30.0%
!!! GATTTGGTTTTTGTTCTTGT+TGG - chr2_4:26796365-26796384 Msa0323180:intron 30.0%
TGTAGAATAGTAGATGTATC+AGG - chr2_4:26796688-26796707 Msa0323180:intron 30.0%
AAAAATTGAAGAGTTTGTGC+GGG - chr2_4:26796808-26796827 Msa0323180:intron 30.0%
! TTATAGGTTTTACATTTCGG+CGG - chr2_4:26796981-26797000 Msa0323180:intron 30.0%
TGTGGGAGAAATAAAGAATA+TGG - chr2_4:26797004-26797023 Msa0323180:intron 30.0%
TAAAGAATATGGTCGAGATT+TGG - chr2_4:26797015-26797034 Msa0323180:intron 30.0%
AAAAGAGGGAAAAGAAAATC+TGG + chr2_4:26797160-26797179 None:intergenic 30.0%
AAATTTCATCCTAACCAGTA+AGG - chr2_4:26797257-26797276 Msa0323180:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG - chr2_4:26797258-26797277 Msa0323180:intron 30.0%
!! AATAGTCAACAGAAGTATCA+TGG + chr2_4:26797361-26797380 None:intergenic 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG - chr2_4:26797490-26797509 Msa0323180:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG - chr2_4:26797539-26797558 Msa0323180:intron 30.0%
ACTAGATGAAATAACATGAC+AGG + chr2_4:26797639-26797658 None:intergenic 30.0%
AACTCTTAAAATCTTACGAG+TGG - chr2_4:26797709-26797728 Msa0323180:intron 30.0%
TATTTGCTTTCACTATGGAT+TGG - chr2_4:26797820-26797839 Msa0323180:CDS 30.0%
CAAGCATAAAATTGACTATG+TGG - chr2_4:26797927-26797946 Msa0323180:five_prime_UTR 30.0%
TTCAATGTTCAGAGTCAAAA+CGG + chr2_4:26795808-26795827 None:intergenic 30.0%
ATTTACGATCTCTTTCACTT+TGG - chr2_4:26795916-26795935 Msa0323180:intron 30.0%
ATGAAGCAAAAGAAAAAGGA+GGG + chr2_4:26795991-26796010 None:intergenic 30.0%
AATGAAGCAAAAGAAAAAGG+AGG + chr2_4:26795992-26796011 None:intergenic 30.0%
CAAAAGAAAAAAAATGGGGT+TGG + chr2_4:26796100-26796119 None:intergenic 30.0%
!!! CAACCCCATTTTTTTTCTTT+TGG - chr2_4:26796098-26796117 Msa0323180:intron 30.0%
!!! TTGGGTGTTGTTTATGATTT+TGG - chr2_4:26796254-26796273 Msa0323180:intron 30.0%
TTGATTTCCCATTTGCAATT+AGG - chr2_4:26796308-26796327 Msa0323180:intron 30.0%
!! TGATGAAAGTGTCTATGATT+TGG - chr2_4:26796349-26796368 Msa0323180:intron 30.0%
!!! GATTTGGTTTTTGTTCTTGT+TGG - chr2_4:26796365-26796384 Msa0323180:intron 30.0%
TGTAGAATAGTAGATGTATC+AGG - chr2_4:26796688-26796707 Msa0323180:intron 30.0%
AAAAATTGAAGAGTTTGTGC+GGG - chr2_4:26796808-26796827 Msa0323180:intron 30.0%
! TTATAGGTTTTACATTTCGG+CGG - chr2_4:26796981-26797000 Msa0323180:intron 30.0%
TGTGGGAGAAATAAAGAATA+TGG - chr2_4:26797004-26797023 Msa0323180:intron 30.0%
TAAAGAATATGGTCGAGATT+TGG - chr2_4:26797015-26797034 Msa0323180:intron 30.0%
AAAAGAGGGAAAAGAAAATC+TGG + chr2_4:26797160-26797179 None:intergenic 30.0%
AAATTTCATCCTAACCAGTA+AGG - chr2_4:26797257-26797276 Msa0323180:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG - chr2_4:26797258-26797277 Msa0323180:intron 30.0%
!! AATAGTCAACAGAAGTATCA+TGG + chr2_4:26797361-26797380 None:intergenic 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG - chr2_4:26797490-26797509 Msa0323180:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG - chr2_4:26797539-26797558 Msa0323180:intron 30.0%
ACTAGATGAAATAACATGAC+AGG + chr2_4:26797639-26797658 None:intergenic 30.0%
AACTCTTAAAATCTTACGAG+TGG - chr2_4:26797709-26797728 Msa0323180:intron 30.0%
TATTTGCTTTCACTATGGAT+TGG - chr2_4:26797820-26797839 Msa0323180:CDS 30.0%
CAAGCATAAAATTGACTATG+TGG - chr2_4:26797927-26797946 Msa0323180:five_prime_UTR 30.0%
TCTTTGCTTGTTCAAGAGAA+CGG + chr2_4:26795948-26795967 None:intergenic 35.0%
!!! TTTGGGTTTGTTGGTTTTCA+TGG - chr2_4:26796116-26796135 Msa0323180:intron 35.0%
!!! AATGGTTTTTTGCGGTTCAA+TGG - chr2_4:26796868-26796887 Msa0323180:intron 35.0%
AGTTCAGATGTGGCTATTAT+AGG - chr2_4:26796965-26796984 Msa0323180:intron 35.0%
AAGTTTGATACCTGATGACA+TGG - chr2_4:26797218-26797237 Msa0323180:CDS 35.0%
ATTTCATCCTAACCAGTAAG+GGG - chr2_4:26797259-26797278 Msa0323180:intron 35.0%
! GCAAACACGATCTTTAAAGA+TGG + chr2_4:26797491-26797510 None:intergenic 35.0%
AGGTCGAATATACTGTACTT+GGG + chr2_4:26797782-26797801 None:intergenic 35.0%
AAGGTCGAATATACTGTACT+TGG + chr2_4:26797783-26797802 None:intergenic 35.0%
TCTTTGCTTGTTCAAGAGAA+CGG + chr2_4:26795948-26795967 None:intergenic 35.0%
!!! TTTGGGTTTGTTGGTTTTCA+TGG - chr2_4:26796116-26796135 Msa0323180:intron 35.0%
!!! AATGGTTTTTTGCGGTTCAA+TGG - chr2_4:26796868-26796887 Msa0323180:intron 35.0%
AGTTCAGATGTGGCTATTAT+AGG - chr2_4:26796965-26796984 Msa0323180:intron 35.0%
AAGTTTGATACCTGATGACA+TGG - chr2_4:26797218-26797237 Msa0323180:CDS 35.0%
ATTTCATCCTAACCAGTAAG+GGG - chr2_4:26797259-26797278 Msa0323180:intron 35.0%
! GCAAACACGATCTTTAAAGA+TGG + chr2_4:26797491-26797510 None:intergenic 35.0%
AGGTCGAATATACTGTACTT+GGG + chr2_4:26797782-26797801 None:intergenic 35.0%
AAGGTCGAATATACTGTACT+TGG + chr2_4:26797783-26797802 None:intergenic 35.0%
!! GAACAAGATGACTCTGAAGT+TGG - chr2_4:26795856-26795875 Msa0323180:intron 40.0%
CTTTGCTTGTTCAAGAGAAC+GGG + chr2_4:26795947-26795966 None:intergenic 40.0%
CCAACAAGGAGATATGTGTT+TGG + chr2_4:26796476-26796495 None:intergenic 40.0%
CCAAACACATATCTCCTTGT+TGG - chr2_4:26796473-26796492 Msa0323180:intron 40.0%
TGAGATCACACACAAGTACA+AGG - chr2_4:26796508-26796527 Msa0323180:intron 40.0%
GAGATCACACACAAGTACAA+GGG - chr2_4:26796509-26796528 Msa0323180:intron 40.0%
TACTGCCTGCTATCATTACT+TGG + chr2_4:26796835-26796854 None:intergenic 40.0%
!!! TGCGGGTTAATGGTTTTTTG+CGG - chr2_4:26796860-26796879 Msa0323180:intron 40.0%
ATTATTGAACCACTGTGCAG+TGG + chr2_4:26796909-26796928 None:intergenic 40.0%
ACTGCACAGTGGTTCAATAA+TGG - chr2_4:26796908-26796927 Msa0323180:intron 40.0%
CTGCACAGTGGTTCAATAAT+GGG - chr2_4:26796909-26796928 Msa0323180:intron 40.0%
! TCTAGCTTCAAGTTCAGATG+TGG - chr2_4:26796955-26796974 Msa0323180:intron 40.0%
GATTGCTTCTAGTGGTGAAT+AGG - chr2_4:26797047-26797066 Msa0323180:intron 40.0%
GGGAAAAGAAAATCTGGCAT+AGG + chr2_4:26797154-26797173 None:intergenic 40.0%
TTATAACAGGCCATGTCATC+AGG + chr2_4:26797231-26797250 None:intergenic 40.0%
TTTCATCCTAACCAGTAAGG+GGG - chr2_4:26797260-26797279 Msa0323180:intron 40.0%
! ATAAAACCCCCTTACTGGTT+AGG + chr2_4:26797269-26797288 None:intergenic 40.0%
GTGAGTGACGTCTATGATAA+CGG + chr2_4:26797295-26797314 None:intergenic 40.0%
ATAGACGTCACTCACTTTGT+TGG - chr2_4:26797300-26797319 Msa0323180:intron 40.0%
TAGACGTCACTCACTTTGTT+GGG - chr2_4:26797301-26797320 Msa0323180:intron 40.0%
CACTTTGTTGGGTAATCGAA+TGG - chr2_4:26797312-26797331 Msa0323180:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG + chr2_4:26797607-26797626 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG - chr2_4:26797607-26797626 Msa0323180:intron 40.0%
AACTCCTGATTGATTACCCA+CGG + chr2_4:26797901-26797920 None:intergenic 40.0%
!! GAACAAGATGACTCTGAAGT+TGG - chr2_4:26795856-26795875 Msa0323180:intron 40.0%
CTTTGCTTGTTCAAGAGAAC+GGG + chr2_4:26795947-26795966 None:intergenic 40.0%
CCAACAAGGAGATATGTGTT+TGG + chr2_4:26796476-26796495 None:intergenic 40.0%
CCAAACACATATCTCCTTGT+TGG - chr2_4:26796473-26796492 Msa0323180:intron 40.0%
TGAGATCACACACAAGTACA+AGG - chr2_4:26796508-26796527 Msa0323180:intron 40.0%
GAGATCACACACAAGTACAA+GGG - chr2_4:26796509-26796528 Msa0323180:intron 40.0%
TACTGCCTGCTATCATTACT+TGG + chr2_4:26796835-26796854 None:intergenic 40.0%
!!! TGCGGGTTAATGGTTTTTTG+CGG - chr2_4:26796860-26796879 Msa0323180:intron 40.0%
ATTATTGAACCACTGTGCAG+TGG + chr2_4:26796909-26796928 None:intergenic 40.0%
ACTGCACAGTGGTTCAATAA+TGG - chr2_4:26796908-26796927 Msa0323180:intron 40.0%
CTGCACAGTGGTTCAATAAT+GGG - chr2_4:26796909-26796928 Msa0323180:intron 40.0%
! TCTAGCTTCAAGTTCAGATG+TGG - chr2_4:26796955-26796974 Msa0323180:intron 40.0%
GATTGCTTCTAGTGGTGAAT+AGG - chr2_4:26797047-26797066 Msa0323180:intron 40.0%
GGGAAAAGAAAATCTGGCAT+AGG + chr2_4:26797154-26797173 None:intergenic 40.0%
TTATAACAGGCCATGTCATC+AGG + chr2_4:26797231-26797250 None:intergenic 40.0%
TTTCATCCTAACCAGTAAGG+GGG - chr2_4:26797260-26797279 Msa0323180:intron 40.0%
! ATAAAACCCCCTTACTGGTT+AGG + chr2_4:26797269-26797288 None:intergenic 40.0%
GTGAGTGACGTCTATGATAA+CGG + chr2_4:26797295-26797314 None:intergenic 40.0%
ATAGACGTCACTCACTTTGT+TGG - chr2_4:26797300-26797319 Msa0323180:intron 40.0%
TAGACGTCACTCACTTTGTT+GGG - chr2_4:26797301-26797320 Msa0323180:intron 40.0%
CACTTTGTTGGGTAATCGAA+TGG - chr2_4:26797312-26797331 Msa0323180:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG + chr2_4:26797607-26797626 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG - chr2_4:26797607-26797626 Msa0323180:intron 40.0%
AACTCCTGATTGATTACCCA+CGG + chr2_4:26797901-26797920 None:intergenic 40.0%
CCATCAGCATAAACACGAAC+AGG + chr2_4:26795895-26795914 None:intergenic 45.0%
CCTGTTCGTGTTTATGCTGA+TGG - chr2_4:26795892-26795911 Msa0323180:intron 45.0%
TCTCTTCGTCACTGCAAGTT+CGG - chr2_4:26796566-26796585 Msa0323180:intron 45.0%
! CTTTTCTTTCCGTGAGCTTG+TGG - chr2_4:26796758-26796777 Msa0323180:intron 45.0%
! TGGTTGATTCCACAAGCTCA+CGG + chr2_4:26796770-26796789 None:intergenic 45.0%
! ATAGCAGGCAGTAGTTTGTG+CGG - chr2_4:26796842-26796861 Msa0323180:intron 45.0%
! CAGTAGTTTGTGCGGGTTAA+TGG - chr2_4:26796850-26796869 Msa0323180:intron 45.0%
! CACAGTGGTTCAATAATGGG+TGG - chr2_4:26796912-26796931 Msa0323180:intron 45.0%
!! TGGTTCAATAATGGGTGGTG+CGG - chr2_4:26796917-26796936 Msa0323180:intron 45.0%
! GTTTTACATTTCGGCGGTGT+GGG - chr2_4:26796987-26797006 Msa0323180:intron 45.0%
GCTTCAACGATTGCTTCTAG+TGG - chr2_4:26797039-26797058 Msa0323180:intron 45.0%
CTTCTAGTGGTGAATAGGCT+AGG - chr2_4:26797052-26797071 Msa0323180:intron 45.0%
TAGGTGCGATGGCAATGAAA+TGG - chr2_4:26797071-26797090 Msa0323180:intron 45.0%
TCGAGAAGAAGCAAGCTTCA+GGG + chr2_4:26797124-26797143 None:intergenic 45.0%
GGAGAATAAAACCCCCTTAC+TGG + chr2_4:26797274-26797293 None:intergenic 45.0%
GATGAAGTGAACGGTGAGAT+TGG - chr2_4:26797398-26797417 Msa0323180:intron 45.0%
AGATCGTGTTTGCGGATAAC+TGG - chr2_4:26797498-26797517 Msa0323180:intron 45.0%
GGCGTCTTTCTGATTATGTC+TGG - chr2_4:26797560-26797579 Msa0323180:intron 45.0%
AGTTCAATTGCTCTTGCTGC+AGG - chr2_4:26797848-26797867 Msa0323180:exon 45.0%
AAGTTATTCCAGATGTGCCG+TGG - chr2_4:26797881-26797900 Msa0323180:five_prime_UTR 45.0%
AGTTATTCCAGATGTGCCGT+GGG - chr2_4:26797882-26797901 Msa0323180:five_prime_UTR 45.0%
CCATCAGCATAAACACGAAC+AGG + chr2_4:26795895-26795914 None:intergenic 45.0%
CCTGTTCGTGTTTATGCTGA+TGG - chr2_4:26795892-26795911 Msa0323180:intron 45.0%
TCTCTTCGTCACTGCAAGTT+CGG - chr2_4:26796566-26796585 Msa0323180:intron 45.0%
! CTTTTCTTTCCGTGAGCTTG+TGG - chr2_4:26796758-26796777 Msa0323180:intron 45.0%
! TGGTTGATTCCACAAGCTCA+CGG + chr2_4:26796770-26796789 None:intergenic 45.0%
! ATAGCAGGCAGTAGTTTGTG+CGG - chr2_4:26796842-26796861 Msa0323180:intron 45.0%
! CAGTAGTTTGTGCGGGTTAA+TGG - chr2_4:26796850-26796869 Msa0323180:intron 45.0%
! CACAGTGGTTCAATAATGGG+TGG - chr2_4:26796912-26796931 Msa0323180:intron 45.0%
!! TGGTTCAATAATGGGTGGTG+CGG - chr2_4:26796917-26796936 Msa0323180:intron 45.0%
! GTTTTACATTTCGGCGGTGT+GGG - chr2_4:26796987-26797006 Msa0323180:intron 45.0%
GCTTCAACGATTGCTTCTAG+TGG - chr2_4:26797039-26797058 Msa0323180:intron 45.0%
CTTCTAGTGGTGAATAGGCT+AGG - chr2_4:26797052-26797071 Msa0323180:intron 45.0%
TAGGTGCGATGGCAATGAAA+TGG - chr2_4:26797071-26797090 Msa0323180:intron 45.0%
TCGAGAAGAAGCAAGCTTCA+GGG + chr2_4:26797124-26797143 None:intergenic 45.0%
GGAGAATAAAACCCCCTTAC+TGG + chr2_4:26797274-26797293 None:intergenic 45.0%
GATGAAGTGAACGGTGAGAT+TGG - chr2_4:26797398-26797417 Msa0323180:intron 45.0%
AGATCGTGTTTGCGGATAAC+TGG - chr2_4:26797498-26797517 Msa0323180:intron 45.0%
GGCGTCTTTCTGATTATGTC+TGG - chr2_4:26797560-26797579 Msa0323180:intron 45.0%
AGTTCAATTGCTCTTGCTGC+AGG - chr2_4:26797848-26797867 Msa0323180:exon 45.0%
AAGTTATTCCAGATGTGCCG+TGG - chr2_4:26797881-26797900 Msa0323180:five_prime_UTR 45.0%
AGTTATTCCAGATGTGCCGT+GGG - chr2_4:26797882-26797901 Msa0323180:five_prime_UTR 45.0%
CTTGTTCAAGAGAACGGGCA+TGG + chr2_4:26795942-26795961 None:intergenic 50.0%
CATCACTGCAGCATCCAACA+AGG + chr2_4:26796490-26796509 None:intergenic 50.0%
CGGGTCCAAGTAATGATAGC+AGG - chr2_4:26796827-26796846 Msa0323180:intron 50.0%
! TAGCAGGCAGTAGTTTGTGC+GGG - chr2_4:26796843-26796862 Msa0323180:intron 50.0%
! GACAGTTTTCCACTGCACAG+TGG - chr2_4:26796897-26796916 Msa0323180:intron 50.0%
!! TTCAATAATGGGTGGTGCGG+TGG - chr2_4:26796920-26796939 Msa0323180:intron 50.0%
! GGTTTTACATTTCGGCGGTG+TGG - chr2_4:26796986-26797005 Msa0323180:intron 50.0%
CTCGAGAAGAAGCAAGCTTC+AGG + chr2_4:26797125-26797144 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG - chr2_4:26797501-26797520 Msa0323180:intron 50.0%
ATTGCTTACGGCTGTGGAGT+AGG - chr2_4:26797613-26797632 Msa0323180:intron 50.0%
TCAATTGCTCTTGCTGCAGG+TGG - chr2_4:26797851-26797870 Msa0323180:exon 50.0%
CAATTGCTCTTGCTGCAGGT+GGG - chr2_4:26797852-26797871 Msa0323180:exon 50.0%
TTGATTACCCACGGCACATC+TGG + chr2_4:26797892-26797911 None:intergenic 50.0%
TGTGCCGTGGGTAATCAATC+AGG - chr2_4:26797894-26797913 Msa0323180:five_prime_UTR 50.0%
CTTGTTCAAGAGAACGGGCA+TGG + chr2_4:26795942-26795961 None:intergenic 50.0%
CATCACTGCAGCATCCAACA+AGG + chr2_4:26796490-26796509 None:intergenic 50.0%
CGGGTCCAAGTAATGATAGC+AGG - chr2_4:26796827-26796846 Msa0323180:intron 50.0%
! TAGCAGGCAGTAGTTTGTGC+GGG - chr2_4:26796843-26796862 Msa0323180:intron 50.0%
! GACAGTTTTCCACTGCACAG+TGG - chr2_4:26796897-26796916 Msa0323180:intron 50.0%
!! TTCAATAATGGGTGGTGCGG+TGG - chr2_4:26796920-26796939 Msa0323180:intron 50.0%
! GGTTTTACATTTCGGCGGTG+TGG - chr2_4:26796986-26797005 Msa0323180:intron 50.0%
CTCGAGAAGAAGCAAGCTTC+AGG + chr2_4:26797125-26797144 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG - chr2_4:26797501-26797520 Msa0323180:intron 50.0%
ATTGCTTACGGCTGTGGAGT+AGG - chr2_4:26797613-26797632 Msa0323180:intron 50.0%
TCAATTGCTCTTGCTGCAGG+TGG - chr2_4:26797851-26797870 Msa0323180:exon 50.0%
CAATTGCTCTTGCTGCAGGT+GGG - chr2_4:26797852-26797871 Msa0323180:exon 50.0%
TTGATTACCCACGGCACATC+TGG + chr2_4:26797892-26797911 None:intergenic 50.0%
TGTGCCGTGGGTAATCAATC+AGG - chr2_4:26797894-26797913 Msa0323180:five_prime_UTR 50.0%
GGTGAATAGGCTAGGTGCGA+TGG - chr2_4:26797060-26797079 Msa0323180:intron 55.0%
CAGGGCTCTCGAAGACAACA+AGG + chr2_4:26797106-26797125 None:intergenic 55.0%
GGTGAATAGGCTAGGTGCGA+TGG - chr2_4:26797060-26797079 Msa0323180:intron 55.0%
CAGGGCTCTCGAAGACAACA+AGG + chr2_4:26797106-26797125 None:intergenic 55.0%
TGGGTGGTGCGGTGGATCTG+TGG - chr2_4:26796928-26796947 Msa0323180:intron 65.0%
TGGGTGGTGCGGTGGATCTG+TGG - chr2_4:26796928-26796947 Msa0323180:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 26795742 26797969 26795742 ID=Msa0323180;Name=Msa0323180
chr2_4 mRNA 26795742 26797969 26795742 ID=Msa0323180-mRNA-1;Parent=Msa0323180;Name=Msa0323180-mRNA-1;_AED=0.11;_eAED=0.11;_QI=108|0.5|0.33|0.66|1|1|3|0|111
chr2_4 exon 26795742 26795841 26795742 ID=Msa0323180-mRNA-1:exon:9351;Parent=Msa0323180-mRNA-1
chr2_4 exon 26797129 26797242 26797129 ID=Msa0323180-mRNA-1:exon:9350;Parent=Msa0323180-mRNA-1
chr2_4 exon 26797740 26797969 26797740 ID=Msa0323180-mRNA-1:exon:9349;Parent=Msa0323180-mRNA-1
chr2_4 five_prime_UTR 26797862 26797969 26797862 ID=Msa0323180-mRNA-1:five_prime_utr;Parent=Msa0323180-mRNA-1
chr2_4 CDS 26797740 26797861 26797740 ID=Msa0323180-mRNA-1:cds;Parent=Msa0323180-mRNA-1
chr2_4 CDS 26797129 26797242 26797129 ID=Msa0323180-mRNA-1:cds;Parent=Msa0323180-mRNA-1
chr2_4 CDS 26795742 26795841 26795742 ID=Msa0323180-mRNA-1:cds;Parent=Msa0323180-mRNA-1
Gene Sequence

>Msa0323180

ATGAATGAACAAGATGACTCTGAAGTTGGCAAAAACGATAAACCTGTTCGTGTTTATGCTGATGGAATTTACGATCTCTTTCACTTTGGCCATGCCCGTTCTCTTGAACAAGCAAAGAAATCGTTTCCAAACACATATCTCCTTGTTGGATGCTGCAGTGATGAGATCACACACAAGTACAAGGGTAAAACAGTTATGAATGAGCAAGAACGCTATGAGTCTCTTCGTCACTGCAAGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGACGCTCTTCCGTAA

Protein sequence

>Msa0323180

MNEQDDSEVGKNDKPVRVYADGIYDLFHFGHARSLEQAKKSFPNTYLLVGCCSDEITHKYKGKTVMNEQERYESLRHCKWVDEVIPDVPWVINQEFIDKHKIDYVAHDALP*