AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0031330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031330 MtrunA17_Chr1g0189361 98.661 224 3 0 1 224 1 224 4.50e-167 459
Msa0031330 MtrunA17_Chr7g0214241 64.651 215 64 2 13 223 14 220 7.66e-96 279
Msa0031330 MtrunA17_Chr7g0234201 73.889 180 47 0 13 192 12 191 7.67e-93 271
Msa0031330 MtrunA17_Chr4g0032201 60.377 212 77 3 12 223 10 214 1.61e-88 260
Msa0031330 MtrunA17_Chr8g0381841 62.887 194 72 0 12 205 15 208 9.99e-87 256
Msa0031330 MtrunA17_Chr3g0123821 57.820 211 86 1 12 222 14 221 3.19e-85 252
Msa0031330 MtrunA17_Chr7g0231131 54.976 211 91 1 12 222 13 219 5.80e-82 243
Msa0031330 MtrunA17_Chr2g0276941 55.093 216 92 2 8 223 9 219 8.13e-82 243
Msa0031330 MtrunA17_Chr1g0174281 55.660 212 91 3 12 222 13 222 8.14e-82 243
Msa0031330 MtrunA17_Chr3g0112681 55.157 223 92 4 1 223 1 215 2.61e-81 242
Msa0031330 MtrunA17_Chr4g0040781 57.075 212 85 3 12 223 11 216 1.93e-80 239
Msa0031330 MtrunA17_Chr2g0283131 56.604 212 86 3 12 223 11 216 5.45e-80 238
Msa0031330 MtrunA17_Chr2g0319951 63.006 173 64 0 12 184 11 183 2.71e-79 236
Msa0031330 MtrunA17_Chr4g0046261 55.189 212 89 3 12 223 11 216 4.39e-79 236
Msa0031330 MtrunA17_Chr2g0315551 56.338 213 85 4 12 223 11 216 1.44e-78 235
Msa0031330 MtrunA17_Chr2g0325091 55.660 212 87 2 12 223 9 213 8.29e-77 230
Msa0031330 MtrunA17_Chr8g0351861 51.869 214 101 1 12 223 14 227 1.11e-76 230
Msa0031330 MtrunA17_Chr8g0346421 59.239 184 74 1 7 190 20 202 2.11e-76 230
Msa0031330 MtrunA17_Chr7g0275991 58.696 184 76 0 12 195 18 201 8.36e-76 228
Msa0031330 MtrunA17_Chr6g0482721 52.582 213 93 3 12 223 10 215 8.90e-69 210
Msa0031330 MtrunA17_Chr8g0392931 51.887 212 97 2 12 223 12 218 2.97e-67 206
Msa0031330 MtrunA17_Chr4g0055651 45.283 212 100 2 12 223 6 201 1.24e-58 184
Msa0031330 MtrunA17_Chr7g0250531 45.283 212 100 3 12 223 6 201 5.77e-57 179
Msa0031330 MtrunA17_Chr2g0290891 43.602 211 115 1 13 223 5 211 2.44e-56 178
Msa0031330 MtrunA17_Chr2g0276931 51.807 166 80 0 12 177 7 172 2.76e-56 177
Msa0031330 MtrunA17_Chr8g0335471 44.811 212 102 3 12 223 6 202 7.75e-56 176
Msa0031330 MtrunA17_Chr1g0182321 42.453 212 111 2 12 222 13 214 1.23e-55 176
Msa0031330 MtrunA17_Chr1g0182301 42.453 212 111 2 12 222 13 214 1.40e-55 176
Msa0031330 MtrunA17_Chr1g0212521 42.326 215 107 4 12 222 13 214 1.00e-54 174
Msa0031330 MtrunA17_Chr6g0458081 44.131 213 113 2 12 223 4 211 1.27e-54 174
Msa0031330 MtrunA17_Chr7g0263071 49.697 165 82 1 12 175 13 177 1.92e-54 173
Msa0031330 MtrunA17_Chr4g0030911 42.453 212 110 3 12 222 13 213 2.95e-54 173
Msa0031330 MtrunA17_Chr8g0349711 44.907 216 112 4 10 223 2 212 1.31e-53 171
Msa0031330 MtrunA17_Chr2g0327911 47.059 170 88 2 8 175 9 178 4.41e-52 167
Msa0031330 MtrunA17_Chr8g0349681 43.779 217 113 3 7 223 377 584 4.23e-51 174
Msa0031330 MtrunA17_Chr8g0349681 44.505 182 98 1 2 183 166 344 7.14e-46 160
Msa0031330 MtrunA17_Chr8g0349681 47.531 162 85 0 10 171 9 170 2.25e-45 159
Msa0031330 MtrunA17_Chr3g0109721 40.385 208 105 2 16 223 12 200 1.85e-48 157
Msa0031330 MtrunA17_Chr5g0433561 38.942 208 108 3 16 223 12 200 6.07e-47 154
Msa0031330 MtrunA17_Chr8g0384311 43.716 183 100 3 12 192 11 192 1.85e-45 150
Msa0031330 MtrunA17_Chr1g0199331 44.099 161 89 1 16 175 33 193 1.51e-44 147
Msa0031330 MtrunA17_Chr7g0265001 40.187 214 113 5 12 223 14 214 4.54e-44 147
Msa0031330 MtrunA17_Chr1g0197331 40.183 219 105 5 12 223 13 212 1.26e-43 145
Msa0031330 MtrunA17_Chr1g0159481 41.026 195 103 4 12 195 15 208 1.99e-43 145
Msa0031330 MtrunA17_Chr1g0180291 41.014 217 104 6 12 222 12 210 3.43e-43 144
Msa0031330 MtrunA17_Chr3g0130271 44.767 172 91 4 12 180 10 180 1.25e-42 143
Msa0031330 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.38e-40 137
Msa0031330 MtrunA17_Chr4g0055081 38.854 157 96 0 15 171 10 166 2.37e-40 137
Msa0031330 MtrunA17_Chr8g0390561 40.625 160 95 0 16 175 11 170 2.83e-40 136
Msa0031330 MtrunA17_Chr3g0123971 36.313 179 108 1 15 193 10 182 3.28e-40 137
Msa0031330 MtrunA17_Chr8g0382221 38.217 157 97 0 15 171 10 166 1.40e-39 135
Msa0031330 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 3.73e-33 118
Msa0031330 MtrunA17_Chr8g0383261 37.725 167 97 2 14 173 12 178 1.01e-32 117
Msa0031330 MtrunA17_Chr6g0466301 37.126 167 98 3 14 173 8 174 4.87e-32 115
Msa0031330 MtrunA17_Chr6g0465491 37.126 167 98 3 14 173 8 174 4.87e-32 115
Msa0031330 MtrunA17_Chr1g0201121 37.126 167 98 2 14 173 8 174 5.33e-32 115
Msa0031330 MtrunA17_Chr2g0331691 35.329 167 101 3 14 173 10 176 2.73e-31 114
Msa0031330 MtrunA17_Chr4g0004661 35.928 167 100 3 14 173 64 230 1.12e-30 114
Msa0031330 MtrunA17_Chr6g0465471 32.990 194 114 5 29 206 5 198 2.59e-24 95.9
Msa0031330 MtrunA17_Chr6g0466161 32.474 194 115 5 29 206 5 198 1.19e-23 94.0
Msa0031330 MtrunA17_Chr3g0138121 30.114 176 117 5 1 175 1 171 1.09e-20 86.7
Msa0031330 MtrunA17_Chr3g0138111 30.114 176 117 5 1 175 1 171 1.21e-20 86.3
Msa0031330 MtrunA17_Chr3g0138101 30.114 176 117 5 1 175 1 171 1.33e-20 86.3
Msa0031330 MtrunA17_Chr6g0466431 36.364 99 54 1 14 112 8 97 2.49e-18 77.0
Msa0031330 MtrunA17_Chr6g0465611 36.364 99 54 1 14 112 8 97 2.49e-18 77.0
Msa0031330 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 3.42e-18 79.3
Msa0031330 MtrunA17_Chr4g0037021 30.460 174 107 5 14 175 6 177 5.12e-18 79.0
Msa0031330 MtrunA17_Chr6g0486041 28.421 190 122 5 14 191 6 193 2.83e-17 77.0
Msa0031330 MtrunA17_Chr8g0371501 30.114 176 105 6 14 175 6 177 6.29e-17 75.9
Msa0031330 MtrunA17_Chr5g0405791 30.114 176 105 6 14 175 6 177 1.09e-16 75.5
Msa0031330 MtrunA17_Chr4g0046211 33.065 124 80 3 14 136 6 127 1.29e-16 73.9
Msa0031330 MtrunA17_Chr3g0117931 28.652 178 113 6 10 175 4 179 5.23e-16 73.9
Msa0031330 MtrunA17_Chr1g0178291 32.370 173 107 4 10 182 427 589 4.05e-15 73.9
Msa0031330 MtrunA17_Chr5g0443631 24.862 181 129 3 4 178 93 272 7.66e-14 68.9
Msa0031330 MtrunA17_Chr2g0331841 44.444 72 39 1 83 153 2 73 7.16e-12 59.7
Msa0031330 MtrunA17_Chr1g0188111 33.058 121 75 3 15 134 18 133 9.45e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0031330 AT5G47520.1 84.821 224 29 2 1 223 1 220 4.17e-138 386
Msa0031330 AT2G43130.1 60.811 222 79 2 3 224 1 214 2.61e-95 277
Msa0031330 AT2G31680.1 62.443 221 79 1 3 223 1 217 1.29e-94 276
Msa0031330 AT1G05810.2 61.712 222 80 2 2 223 46 262 1.78e-93 275
Msa0031330 AT1G05810.1 61.538 221 80 2 3 223 1 216 3.56e-93 272
Msa0031330 AT3G07410.1 63.470 219 75 2 6 224 4 217 8.81e-93 271
Msa0031330 AT5G47960.1 58.216 213 82 2 12 222 13 220 2.65e-86 255
Msa0031330 AT5G65270.1 66.667 177 59 0 12 188 15 191 3.10e-86 255
Msa0031330 AT5G59150.1 58.333 216 85 2 8 223 6 216 4.74e-85 251
Msa0031330 AT4G39990.1 57.277 213 85 3 12 223 15 222 1.51e-84 251
Msa0031330 AT3G12160.1 55.399 213 91 1 12 224 13 221 3.01e-84 249
Msa0031330 AT1G07410.1 57.075 212 83 3 12 223 10 213 3.07e-84 249
Msa0031330 AT3G46830.1 57.547 212 85 1 12 223 10 216 3.36e-83 247
Msa0031330 AT3G46830.2 57.547 212 85 1 12 223 10 216 3.36e-83 247
Msa0031330 AT1G09630.1 53.363 223 96 3 1 223 1 215 7.91e-82 243
Msa0031330 AT4G18430.1 55.660 212 88 2 12 223 11 216 2.46e-81 242
Msa0031330 AT5G60860.1 57.075 212 85 2 12 223 11 216 6.16e-81 241
Msa0031330 AT1G16920.1 57.547 212 83 3 12 223 11 215 6.58e-81 241
Msa0031330 AT4G18800.1 55.660 212 85 2 12 223 11 213 3.99e-80 239
Msa0031330 AT1G28550.1 53.704 216 95 2 8 223 7 217 1.02e-77 233
Msa0031330 AT1G06400.1 54.245 212 90 2 12 223 11 215 3.92e-77 231
Msa0031330 AT3G15060.1 54.460 213 89 3 12 223 11 216 7.98e-77 231
Msa0031330 AT5G45750.1 53.302 212 92 2 12 223 11 215 1.26e-76 230
Msa0031330 AT2G33870.1 52.778 216 97 2 8 223 7 217 6.78e-76 228
Msa0031330 AT1G18200.1 52.511 219 98 2 12 224 11 229 1.77e-75 228
Msa0031330 AT1G73640.1 58.470 183 75 1 1 183 1 182 6.09e-73 221
Msa0031330 AT1G01200.1 58.427 178 71 2 12 186 26 203 1.55e-68 210
Msa0031330 AT5G59150.2 55.357 168 70 2 56 223 3 165 1.13e-59 185
Msa0031330 AT1G02130.1 45.283 212 101 3 12 223 6 202 1.79e-58 184
Msa0031330 AT3G11730.1 44.601 213 105 3 12 224 6 205 3.32e-57 180
Msa0031330 AT4G17170.1 43.128 211 116 1 13 223 5 211 1.34e-55 176
Msa0031330 AT4G35860.1 43.662 213 114 2 12 223 4 211 3.23e-55 176
Msa0031330 AT5G03520.1 44.601 213 106 3 12 223 13 214 4.62e-55 175
Msa0031330 AT4G17160.1 44.762 210 106 3 13 222 5 204 2.78e-54 173
Msa0031330 AT3G09900.1 43.256 215 108 4 12 223 13 216 3.14e-54 173
Msa0031330 AT3G46060.2 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0031330 AT3G46060.3 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0031330 AT3G46060.1 49.412 170 85 1 12 180 13 182 6.75e-54 172
Msa0031330 AT3G53610.2 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0031330 AT3G53610.3 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0031330 AT3G53610.1 42.523 214 108 4 12 222 13 214 7.13e-54 172
Msa0031330 AT5G59840.1 49.697 165 82 1 12 175 13 177 8.30e-54 172
Msa0031330 AT4G17530.1 43.396 212 104 2 12 223 6 201 9.86e-54 171
Msa0031330 AT5G47200.1 43.396 212 104 2 12 223 6 201 1.32e-53 171
Msa0031330 AT4G19640.1 38.942 208 108 3 16 223 12 200 7.39e-48 156
Msa0031330 AT3G54840.1 45.963 161 86 1 16 175 35 195 1.07e-45 151
Msa0031330 AT3G54840.3 45.625 160 86 1 17 175 2 161 2.11e-45 149
Msa0031330 AT3G54840.2 47.097 155 81 1 16 169 35 189 3.22e-45 149
Msa0031330 AT5G45130.1 42.945 163 93 0 16 178 12 174 5.66e-45 149
Msa0031330 AT5G45130.2 42.857 161 92 0 18 178 22 182 1.49e-43 145
Msa0031330 AT5G03530.2 41.014 217 106 7 12 223 11 210 2.23e-43 145
Msa0031330 AT5G03530.1 41.014 217 106 7 12 223 11 210 2.23e-43 145
Msa0031330 AT1G43890.3 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0031330 AT1G43890.1 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0031330 AT1G43890.2 45.783 166 87 3 12 175 11 175 1.22e-42 143
Msa0031330 AT4G39890.1 40.506 158 93 1 15 171 10 167 5.36e-42 142
Msa0031330 AT5G03520.2 41.477 176 91 3 49 223 40 204 1.40e-41 140
Msa0031330 AT5G10260.1 34.928 209 124 3 15 223 10 206 3.77e-41 139
Msa0031330 AT2G44610.1 39.490 157 95 0 15 171 10 166 1.12e-40 138
Msa0031330 AT4G35860.2 42.169 166 90 2 58 222 4 164 2.50e-38 131
Msa0031330 AT2G22290.1 36.943 157 99 0 15 171 10 166 1.28e-37 130
Msa0031330 AT3G09910.3 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0031330 AT3G09910.1 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0031330 AT3G09910.2 37.788 217 107 6 12 223 11 204 2.46e-37 129
Msa0031330 AT4G19640.2 43.846 130 73 0 16 145 12 141 5.36e-37 127
Msa0031330 AT4G19640.3 43.511 131 74 0 16 146 12 142 1.89e-36 127
Msa0031330 AT3G09910.5 39.572 187 104 4 12 193 11 193 4.52e-36 126
Msa0031330 AT3G09910.4 39.572 187 104 4 12 193 11 193 4.52e-36 126
Msa0031330 AT1G22740.1 38.323 167 96 2 14 173 8 174 1.23e-34 122
Msa0031330 AT5G64990.1 35.714 154 99 0 15 168 8 161 2.54e-33 119
Msa0031330 AT1G52280.1 37.647 170 99 4 14 176 8 177 4.34e-33 119
Msa0031330 AT3G18820.1 37.500 168 98 4 14 174 8 175 1.62e-32 117
Msa0031330 AT3G16100.1 37.725 167 97 3 14 173 8 174 5.98e-32 115
Msa0031330 AT2G21880.1 36.970 165 97 4 14 171 9 173 8.96e-31 113
Msa0031330 AT4G09720.1 33.641 217 118 5 14 223 8 205 9.23e-31 112
Msa0031330 AT5G64990.2 34.161 161 99 1 15 168 8 168 1.26e-30 112
Msa0031330 AT5G39620.1 34.404 218 114 7 15 223 6 203 5.28e-30 110
Msa0031330 AT4G09720.4 32.883 222 118 5 14 223 8 210 8.94e-30 110
Msa0031330 AT4G09720.3 32.456 228 117 5 14 223 8 216 5.11e-29 108
Msa0031330 AT1G49300.2 35.152 165 100 4 14 171 8 172 5.09e-28 105
Msa0031330 AT1G49300.1 35.152 165 100 4 14 171 8 172 5.09e-28 105
Msa0031330 AT5G46025.1 47.573 103 53 1 76 177 6 108 3.16e-25 95.9
Msa0031330 AT2G21880.4 35.135 148 89 4 31 171 1 148 1.10e-22 91.3
Msa0031330 AT2G21880.3 35.135 148 89 4 31 171 1 148 1.10e-22 91.3
Msa0031330 AT4G09720.6 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0031330 AT4G09720.5 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0031330 AT4G09720.2 33.690 187 98 5 44 223 4 171 1.53e-22 90.5
Msa0031330 AT5G55080.1 28.571 175 121 3 1 175 1 171 5.53e-22 90.5
Msa0031330 AT2G21880.2 32.121 165 97 5 14 171 9 165 5.21e-21 87.4
Msa0031330 AT2G44690.1 32.222 180 108 5 14 181 18 195 1.14e-20 86.7
Msa0031330 AT5G20020.1 31.053 190 117 7 1 189 1 177 1.17e-20 87.0
Msa0031330 AT5G20010.1 31.053 190 117 7 1 189 1 177 1.53e-20 86.7
Msa0031330 AT5G55190.1 30.114 176 117 5 1 175 1 171 1.76e-20 86.3
Msa0031330 AT4G35020.1 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0031330 AT4G35020.2 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0031330 AT4G35020.3 31.034 174 106 6 14 175 6 177 1.83e-17 77.8
Msa0031330 AT5G45970.1 30.233 172 106 5 14 173 6 175 2.52e-17 77.4
Msa0031330 AT4G28950.1 29.050 179 115 5 14 182 6 182 3.99e-17 77.0
Msa0031330 AT5G62880.1 29.213 178 112 5 14 179 8 183 4.93e-17 77.0
Msa0031330 AT1G20090.1 30.460 174 107 6 14 175 5 176 5.19e-17 76.6
Msa0031330 AT1G75840.1 29.885 174 108 6 14 175 6 177 6.44e-17 76.3
Msa0031330 AT3G48040.1 29.310 174 109 5 14 175 8 179 1.26e-16 75.9
Msa0031330 AT3G51300.1 30.233 172 106 6 16 175 8 177 1.79e-16 75.1
Msa0031330 AT4G35950.1 29.310 174 109 6 14 175 6 177 3.61e-16 74.3
Msa0031330 AT2G17800.2 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0031330 AT2G17800.1 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0031330 AT3G48040.2 29.299 157 97 5 14 158 8 162 3.90e-14 68.6
Msa0031330 AT5G62880.2 28.662 157 98 5 14 158 8 162 2.77e-13 66.2
Msa0031330 AT4G35020.4 32.456 114 74 3 16 128 8 119 5.61e-12 62.0
Msa0031330 AT4G35020.5 32.456 114 74 3 16 128 8 119 5.61e-12 62.0
Msa0031330 AT3G22950.1 31.405 121 77 3 15 134 18 133 4.41e-11 60.1
Msa0031330 AT3G22950.2 31.405 121 77 3 15 134 18 133 4.41e-11 60.1

Find 90 sgRNAs with CRISPR-Local

Find 408 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACAAGGTTTGTTCTTTA+TGG 0.121880 1_1:-58057837 Msa0031330:CDS
ATTGATTGGGTTTGGAAAAT+TGG 0.154373 1_1:+58062766 None:intergenic
CCCAAGAGTTGCTGACTTTC+CGG 0.175365 1_1:+58059140 None:intergenic
CCTATAGTTGACTTTGAATT+AGG 0.178199 1_1:+58058989 None:intergenic
TCTGAAAAGTTTGATTCTTT+TGG 0.196734 1_1:-58059422 Msa0031330:five_prime_UTR
ATGTTTGCTCAAAGGAATTT+TGG 0.219236 1_1:-58057509 Msa0031330:three_prime_UTR
CTGTTACTTCTGCATATTAT+AGG 0.243592 1_1:-58058877 Msa0031330:CDS
GCACTTCAAGCACAATTAAA+AGG 0.257247 1_1:-58057470 Msa0031330:three_prime_UTR
CAGCAGAAGGGGAGACAAAA+AGG 0.279423 1_1:-58057643 Msa0031330:CDS
TGTTACTTCTGCATATTATA+GGG 0.293105 1_1:-58058876 Msa0031330:CDS
AAGGGGTTGTTGTTCGAAAT+AGG 0.304511 1_1:-58057624 Msa0031330:exon
TTATAATAAGAACATAGTTT+TGG 0.311590 1_1:+58057583 None:intergenic
AAAATGCCGCTAGGTTATTC+AGG 0.313023 1_1:-58057542 Msa0031330:three_prime_UTR
GGGTGCAGTTGGAGCACTTC+TGG 0.313947 1_1:-58058855 Msa0031330:CDS
GATGCTTCCTGGATTGAAAA+TGG 0.324916 1_1:-58057701 Msa0031330:CDS
GAAGGAGGAAAGGGATTGAT+TGG 0.332599 1_1:+58062752 None:intergenic
AGGAAGTTAAAGCGCAGATA+TGG 0.333773 1_1:-58058928 Msa0031330:CDS
GGAAAGGGATTGATTGGGTT+TGG 0.343082 1_1:+58062758 None:intergenic
TAAACAACCATCATGGATTC+TGG 0.366930 1_1:+58059184 None:intergenic
AAAGTTAATAGACAGGAAAA+TGG 0.372719 1_1:-58057397 Msa0031330:three_prime_UTR
TAAAGAGTTGAAGTGTAAGT+TGG 0.375881 1_1:-58061459 Msa0031330:five_prime_UTR
TGGGAACAAGTCAGATCTTA+AGG 0.381456 1_1:-58057903 Msa0031330:CDS
TCAAGAAAGATGATGCTTCC+TGG 0.401349 1_1:-58057712 Msa0031330:CDS
ATTAGGTGATATTCTAGTAT+TGG 0.407722 1_1:-58059213 Msa0031330:intron
CCTAATTCAAAGTCAACTAT+AGG 0.411802 1_1:-58058989 Msa0031330:CDS
CTTGAGACATCATAACCTTC+CGG 0.418307 1_1:+58057738 None:intergenic
CACCCAACTGTTGCTTCATA+AGG 0.421536 1_1:-58059355 Msa0031330:intron
ACCGGAAAGTCAGCAACTCT+TGG 0.429868 1_1:-58059141 Msa0031330:five_prime_UTR
AACGTTGTCACAATACTTGT+TGG 0.431302 1_1:-58057923 Msa0031330:CDS
AAGGAGGAAAGGGATTGATT+GGG 0.465825 1_1:+58062753 None:intergenic
ACAAGGAGAGAAGTTGTTTG+AGG 0.470536 1_1:-58061414 Msa0031330:intron
CGCAGATATGGGACACAGCT+GGG 0.471236 1_1:-58058916 Msa0031330:CDS
GCGCAGATATGGGACACAGC+TGG 0.472726 1_1:-58058917 Msa0031330:CDS
GGAAGTTAAAGCGCAGATAT+GGG 0.487077 1_1:-58058927 Msa0031330:CDS
ACGTTGTCACAATACTTGTT+GGG 0.487177 1_1:-58057922 Msa0031330:CDS
TGATCTTAATGTTTGCTCAA+AGG 0.487616 1_1:-58057517 Msa0031330:three_prime_UTR
ATTTACTCGCAAGATTTGCC+AGG 0.491537 1_1:-58059024 Msa0031330:CDS
TAATTGGTGATTCAGCTGTT+GGG 0.495291 1_1:-58059054 Msa0031330:CDS
GCATATTATAGGGGTGCAGT+TGG 0.498462 1_1:-58058866 Msa0031330:CDS
TTCTGGTATATGACATCAGC+AGG 0.502132 1_1:-58058838 Msa0031330:CDS
CCGGAAAGTCAGCAACTCTT+GGG 0.509080 1_1:-58059140 Msa0031330:five_prime_UTR
TTAATTGGTGATTCAGCTGT+TGG 0.515554 1_1:-58059055 Msa0031330:CDS
CGTCAAACGTTTGATAGCAT+TGG 0.518334 1_1:-58058815 Msa0031330:CDS
GTTGATTTGTTTCTACCCAC+CGG 0.522730 1_1:-58059159 Msa0031330:five_prime_UTR
AGCAAATCAAATGAGAGAGA+AGG 0.523475 1_1:+58062796 None:intergenic
AAGTGTAAGTTGGAGTTCAA+AGG 0.529244 1_1:-58061449 Msa0031330:five_prime_UTR
TACCTTATGAAGCAACAGTT+GGG 0.534143 1_1:+58059353 None:intergenic
TATGCGATTGAAGGAGGAAA+GGG 0.541301 1_1:+58062743 None:intergenic
GCAAATCAAATGAGAGAGAA+GGG 0.541797 1_1:+58062797 None:intergenic
ATACCTTATGAAGCAACAGT+TGG 0.549284 1_1:+58059352 None:intergenic
TGATGCTGATATGCGATTGA+AGG 0.550236 1_1:+58062734 None:intergenic
GAAGGGGATCGATCAGCAGA+AGG 0.552374 1_1:-58057656 Msa0031330:CDS
TCAACAATAAACAACCATCA+TGG 0.552951 1_1:+58059177 None:intergenic
GTTACTTCTGCATATTATAG+GGG 0.554984 1_1:-58058875 Msa0031330:CDS
ACTGTTGTTCTACAACAAGA+AGG 0.557959 1_1:-58057674 Msa0031330:CDS
AGCATCATCATTTCATATCA+CGG 0.559041 1_1:-58062718 Msa0031330:intron
ATTAGGATAAAATTCATCCC+TGG 0.561389 1_1:+58059006 None:intergenic
CAACTCTTGGGACTCACAGA+TGG 0.563632 1_1:-58059128 Msa0031330:exon
CGTTTGATAGCATTGGTCGA+TGG 0.567811 1_1:-58058808 Msa0031330:CDS
CTGTTGTTCTACAACAAGAA+GGG 0.571816 1_1:-58057673 Msa0031330:CDS
AAGAGTTGCTGACTTTCCGG+TGG 0.571928 1_1:+58059143 None:intergenic
GGGACACAGCTGGGCAAGAG+AGG 0.572066 1_1:-58058907 Msa0031330:CDS
AGATCTTAAGGATGCGAGAG+AGG 0.573972 1_1:-58057891 Msa0031330:CDS
AAATCTACAACATATTAAGC+CGG 0.576659 1_1:-58057757 Msa0031330:CDS
AGGGGATCGATCAGCAGAAG+GGG 0.577182 1_1:-58057654 Msa0031330:CDS
ATATGCGATTGAAGGAGGAA+AGG 0.587575 1_1:+58062742 None:intergenic
AAGGGGATCGATCAGCAGAA+GGG 0.592624 1_1:-58057655 Msa0031330:CDS
GGTACCTACGACGGAAGGCA+AGG 0.605827 1_1:-58057870 Msa0031330:CDS
AGAGAGGTACCTACGACGGA+AGG 0.610104 1_1:-58057875 Msa0031330:CDS
TAAATCACATACTAGAAGAA+CGG 0.611846 1_1:-58062825 Msa0031330:five_prime_UTR
TAATGAAGAAGAGAAGACAG+AGG 0.611987 1_1:-58059098 Msa0031330:CDS
AGAGTTGCTGACTTTCCGGT+GGG 0.615240 1_1:+58059144 None:intergenic
AAAGGACTGAGGGGAAAACA+AGG 0.618996 1_1:-58061431 Msa0031330:five_prime_UTR
TGTTGTTCTACAACAAGAAG+GGG 0.621100 1_1:-58057672 Msa0031330:CDS
AACGCCTTGCCTTCCGTCGT+AGG 0.621241 1_1:+58057866 None:intergenic
CTACAACATATTAAGCCGGA+AGG 0.622382 1_1:-58057753 Msa0031330:CDS
TTTACTCGCAAGATTTGCCA+GGG 0.623585 1_1:-58059023 Msa0031330:CDS
GTTGGAGTTCAAAGGACTGA+GGG 0.629671 1_1:-58061441 Msa0031330:five_prime_UTR
AAGGCGTTAGCTGAGGCACA+AGG 0.638041 1_1:-58057851 Msa0031330:CDS
GGAAGGCAAGGCGTTAGCTG+AGG 0.641771 1_1:-58057858 Msa0031330:CDS
AAAGGTCTGGATGCTGATGG+TGG 0.641841 1_1:-58059397 Msa0031330:five_prime_UTR
CCAAACCTGAAAATGCCGCT+AGG 0.648028 1_1:-58057551 Msa0031330:three_prime_UTR
GACAAAGGTCTGGATGCTGA+TGG 0.652816 1_1:-58059400 Msa0031330:five_prime_UTR
GAGAAAGCCAGAATCCATGA+TGG 0.653639 1_1:-58059191 Msa0031330:five_prime_UTR
TGCTGATATGCGATTGAAGG+AGG 0.673397 1_1:+58062737 None:intergenic
AGTTGGAGTTCAAAGGACTG+AGG 0.676669 1_1:-58061442 Msa0031330:five_prime_UTR
GTGTTCAATTAATGAAACTG+CGG 0.681822 1_1:+58057426 None:intergenic
TTGGAGTTCAAAGGACTGAG+GGG 0.715065 1_1:-58061440 Msa0031330:five_prime_UTR
ATCAATCCTGAATAACCTAG+CGG 0.716390 1_1:+58057536 None:intergenic
TGCGAGAGAGGTACCTACGA+CGG 0.743487 1_1:-58057879 Msa0031330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAATTTATCTATATC+TGG - chr1_1:58058167-58058186 Msa0031330:intron 10.0%
!! TTATTAATTTATCTATATCT+GGG - chr1_1:58058168-58058187 Msa0031330:intron 10.0%
!! CTAAAAATCATATAAAAAAT+AGG + chr1_1:58058341-58058360 None:intergenic 10.0%
!! GTTTGAAAAAAAAAAAAAAA+AGG + chr1_1:58059676-58059695 None:intergenic 10.0%
!!! TAATCTTAAGATTTATTTTT+TGG - chr1_1:58060958-58060977 Msa0031330:intron 10.0%
!!! AATTTTGTTTATTTACATAT+AGG + chr1_1:58061709-58061728 None:intergenic 10.0%
!! AAAAAAAAAAAAAACGTATA+TGG + chr1_1:58061978-58061997 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGAAG+GGG - chr1_1:58061991-58062010 Msa0031330:intron 10.0%
!! ATATAATAATGAATGAAAGA+TGG + chr1_1:58057725-58057744 None:intergenic 15.0%
!! AATAAATGTACAAAATTAGT+TGG - chr1_1:58057814-58057833 Msa0031330:CDS 15.0%
!!! TTTTTTATATGATTTTTAGC+AGG - chr1_1:58058342-58058361 Msa0031330:intron 15.0%
!!! ATGATGAAACAAATATTTTT+GGG - chr1_1:58059768-58059787 Msa0031330:intron 15.0%
!! AAGAATTATGTAAAATTGAA+TGG - chr1_1:58060700-58060719 Msa0031330:intron 15.0%
!! TTTATGATACTGAAAATTAA+TGG - chr1_1:58061639-58061658 Msa0031330:intron 15.0%
!!! TTATAATAAGAACATAGTTT+TGG + chr1_1:58062699-58062718 None:intergenic 15.0%
!! ACAATGAATGAATGAAATTT+GGG + chr1_1:58057650-58057669 None:intergenic 20.0%
!! AACAATGAATGAATGAAATT+TGG + chr1_1:58057651-58057670 None:intergenic 20.0%
!!! ATACATTTTGACATAATAAC+AGG - chr1_1:58058786-58058805 Msa0031330:intron 20.0%
!!! TACATTTTGACATAATAACA+GGG - chr1_1:58058787-58058806 Msa0031330:intron 20.0%
!! AAATATTAGAAATTGTGGTT+GGG + chr1_1:58059306-58059325 None:intergenic 20.0%
!! TAAATATTAGAAATTGTGGT+TGG + chr1_1:58059307-58059326 None:intergenic 20.0%
!! AATAACTATCAACCTTAATT+TGG - chr1_1:58059565-58059584 Msa0031330:intron 20.0%
!!! GATGATGAAACAAATATTTT+TGG - chr1_1:58059767-58059786 Msa0031330:intron 20.0%
!!! TGATGAAACAAATATTTTTG+GGG - chr1_1:58059769-58059788 Msa0031330:intron 20.0%
!!! AATAAGTTGATAACATTTTC+AGG + chr1_1:58059852-58059871 None:intergenic 20.0%
!! CACATTAATATAATAATTGC+AGG - chr1_1:58060270-58060289 Msa0031330:intron 20.0%
!! TGGTGATAGTTATAAATTTA+TGG - chr1_1:58060611-58060630 Msa0031330:intron 20.0%
!! AATTTATGGAAATGTATTTC+AGG - chr1_1:58060625-58060644 Msa0031330:intron 20.0%
!! ATTTATGGAAATGTATTTCA+GGG - chr1_1:58060626-58060645 Msa0031330:intron 20.0%
!!! CAATTAAGACAATTTTGAAA+AGG + chr1_1:58061211-58061230 None:intergenic 20.0%
!!! CTTTTCAAAATTGTCTTAAT+TGG - chr1_1:58061209-58061228 Msa0031330:intron 20.0%
!!! TAATTTCCATTTTTTGAGTT+TGG + chr1_1:58061325-58061344 None:intergenic 20.0%
!! ACTCAAAAAATGGAAATTAA+CGG - chr1_1:58061326-58061345 Msa0031330:intron 20.0%
!! AAAGAACAAGAAAAATTTCA+AGG + chr1_1:58061547-58061566 None:intergenic 20.0%
!!! AACTTTAGAGATTAAATTGA+GGG + chr1_1:58061805-58061824 None:intergenic 20.0%
!!! AAACTTTAGAGATTAAATTG+AGG + chr1_1:58061806-58061825 None:intergenic 20.0%
!!! AAAAACTTTAGAAACTAAGT+TGG + chr1_1:58061841-58061860 None:intergenic 20.0%
!! AGTCTAAGTATATGAAAATA+TGG + chr1_1:58061942-58061961 None:intergenic 20.0%
!! ATATACTTAGACTAAAATGA+GGG - chr1_1:58061949-58061968 Msa0031330:intron 20.0%
! TAAATCACATACTAGAAGAA+CGG - chr1_1:58057454-58057473 Msa0031330:three_prime_UTR 25.0%
! AATGAATGAATGAAATTTGG+GGG + chr1_1:58057648-58057667 None:intergenic 25.0%
! CAATGAATGAATGAAATTTG+GGG + chr1_1:58057649-58057668 None:intergenic 25.0%
! ATGTACAAAATTAGTTGGAT+TGG - chr1_1:58057819-58057838 Msa0031330:CDS 25.0%
!! CAATAATTTGAGATAGAGAA+GGG - chr1_1:58058079-58058098 Msa0031330:intron 25.0%
! TGAAAAACTGTATGTTTACA+TGG + chr1_1:58058140-58058159 None:intergenic 25.0%
!!! TTTTTTTTTTTCCCTATCTC+AGG - chr1_1:58058201-58058220 Msa0031330:intron 25.0%
!! TTGATTAAGTTTTTCTTGAC+AGG + chr1_1:58058295-58058314 None:intergenic 25.0%
! CTTAATCAAACCATTAAAAG+AGG - chr1_1:58058306-58058325 Msa0031330:intron 25.0%
! GTGAAGCTAAATTTATTTAG+AGG - chr1_1:58058460-58058479 Msa0031330:intron 25.0%
! TATCAAGAATCATGATTCAA+AGG + chr1_1:58058673-58058692 None:intergenic 25.0%
! CTTTAAGCATTAAATAAGAC+AGG + chr1_1:58058728-58058747 None:intergenic 25.0%
! CTCTTAACACTTAATCATTT+GGG + chr1_1:58058959-58058978 None:intergenic 25.0%
! ACTCTTAACACTTAATCATT+TGG + chr1_1:58058960-58058979 None:intergenic 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr1_1:58059002-58059021 Msa0031330:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr1_1:58059003-58059022 Msa0031330:CDS 25.0%
!! CTGACAATTTGTTTATAAGT+GGG - chr1_1:58059002-58059021 Msa0031330:CDS 25.0%
!! TGACAATTTGTTTATAAGTG+GGG - chr1_1:58059003-58059022 Msa0031330:CDS 25.0%
! GTGCTAAATATTAGAAATTG+TGG + chr1_1:58059311-58059330 None:intergenic 25.0%
!! TAAGTTCACTCTAAAAAAAC+TGG - chr1_1:58059411-58059430 Msa0031330:five_prime_UTR 25.0%
! GCATAACAAAAATCAAAGTA+TGG + chr1_1:58059631-58059650 None:intergenic 25.0%
!!! ACTTTGATTTTTGTTATGCT+AGG - chr1_1:58059632-58059651 Msa0031330:intron 25.0%
!! TTTTCAAACTATTTTATGCG+AGG - chr1_1:58059687-58059706 Msa0031330:intron 25.0%
!!! CCAAGACTCTAAAATTATTT+GGG + chr1_1:58060084-58060103 None:intergenic 25.0%
!!! CCAAATAATTTTAGAGTCTT+GGG - chr1_1:58060082-58060101 Msa0031330:intron 25.0%
!! ATATCTAAAACATCATGTTC+TGG + chr1_1:58060351-58060370 None:intergenic 25.0%
!!! AAAAAGGCTCTAAATTTTTC+TGG - chr1_1:58060431-58060450 Msa0031330:intron 25.0%
! AAGTTTACCATAGTTTATGA+TGG + chr1_1:58060467-58060486 None:intergenic 25.0%
! TAGTAAAATTATACCCAGAA+GGG + chr1_1:58060803-58060822 None:intergenic 25.0%
!! TTCTGGGTATAATTTTACTA+CGG - chr1_1:58060803-58060822 Msa0031330:intron 25.0%
!! TCTGAAAAGTTTGATTCTTT+TGG - chr1_1:58060857-58060876 Msa0031330:intron 25.0%
! ATTAGGTGATATTCTAGTAT+TGG - chr1_1:58061066-58061085 Msa0031330:intron 25.0%
! AAAAATGGAAATTAACGGAA+AGG - chr1_1:58061331-58061350 Msa0031330:intron 25.0%
!! TGTTACTTCTGCATATTATA+GGG - chr1_1:58061403-58061422 Msa0031330:intron 25.0%
!!! TAAGCAATCTTTGAAGTATA+TGG - chr1_1:58061869-58061888 Msa0031330:intron 25.0%
!!! TATATGCTTTTAAGATGCTA+GGG - chr1_1:58061907-58061926 Msa0031330:intron 25.0%
! CATATACTTAGACTAAAATG+AGG - chr1_1:58061948-58061967 Msa0031330:intron 25.0%
! ACAATAAAACTTTACACTGT+TGG + chr1_1:58062129-58062148 None:intergenic 25.0%
! TGAATCAAAGCAAAAACAAA+AGG + chr1_1:58062244-58062263 None:intergenic 25.0%
! AAATCTACAACATATTAAGC+CGG - chr1_1:58062522-58062541 Msa0031330:intron 25.0%
! AAAGTTAATAGACAGGAAAA+TGG - chr1_1:58062882-58062901 Msa0031330:intron 25.0%
ATTGATTGGGTTTGGAAAAT+TGG + chr1_1:58057516-58057535 None:intergenic 30.0%
AGCATCATCATTTCATATCA+CGG - chr1_1:58057561-58057580 Msa0031330:three_prime_UTR 30.0%
TATGTACTCGTAACAAGTTA+GGG + chr1_1:58057768-58057787 None:intergenic 30.0%
ATAGACTTCAAAATCCCATA+TGG - chr1_1:58057962-58057981 Msa0031330:intron 30.0%
TAGACTTCAAAATCCCATAT+GGG - chr1_1:58057963-58057982 Msa0031330:intron 30.0%
AATTCTACATTGTCCCATAT+GGG + chr1_1:58057979-58057998 None:intergenic 30.0%
TAATTCTACATTGTCCCATA+TGG + chr1_1:58057980-58057999 None:intergenic 30.0%
CCTTCTCTATCTCAAATTAT+TGG + chr1_1:58058081-58058100 None:intergenic 30.0%
! CCAATAATTTGAGATAGAGA+AGG - chr1_1:58058078-58058097 Msa0031330:intron 30.0%
TCAAACCATTAAAAGAGGTT+TGG - chr1_1:58058311-58058330 Msa0031330:intron 30.0%
CAAAAGTCTTTCTCTCATTA+AGG + chr1_1:58058405-58058424 None:intergenic 30.0%
!!! AGACTTTTGTTTGTTGTTGA+AGG - chr1_1:58058416-58058435 Msa0031330:intron 30.0%
! TTTAGCTTCACAGACTAAAA+AGG + chr1_1:58058451-58058470 None:intergenic 30.0%
TCCCAGATATAAAGTCATTT+GGG - chr1_1:58058541-58058560 Msa0031330:intron 30.0%
ACCCAAATGACTTTATATCT+GGG + chr1_1:58058545-58058564 None:intergenic 30.0%
CTTTAGTAGTGTTAGTTACA+TGG - chr1_1:58058622-58058641 Msa0031330:intron 30.0%
TTCAAAGGAGATGATTTCTA+TGG + chr1_1:58058658-58058677 None:intergenic 30.0%
TTGCCTTTGGTTATATATAC+AGG - chr1_1:58058698-58058717 Msa0031330:intron 30.0%
AGACCTGTATATATAACCAA+AGG + chr1_1:58058704-58058723 None:intergenic 30.0%
CTTGCGAAGAAATCAAAAAA+AGG + chr1_1:58058757-58058776 None:intergenic 30.0%
TAAAGAGTTGAAGTGTAAGT+TGG - chr1_1:58058820-58058839 Msa0031330:CDS 30.0%
TAGATATAAACTTCTGCAGA+AGG + chr1_1:58058912-58058931 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr1_1:58059004-58059023 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr1_1:58059001-58059020 Msa0031330:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr1_1:58059004-58059023 Msa0031330:CDS 30.0%
TGATACCATATTAGAAATCG+TGG + chr1_1:58059077-58059096 None:intergenic 30.0%
CCACTTATAAACAAATTGTC+AGG + chr1_1:58059004-58059023 None:intergenic 30.0%
! CCTGACAATTTGTTTATAAG+TGG - chr1_1:58059001-58059020 Msa0031330:CDS 30.0%
! GACAATTTGTTTATAAGTGG+GGG - chr1_1:58059004-58059023 Msa0031330:CDS 30.0%
! TTTGCCAACAAATGTTTTTC+AGG - chr1_1:58059381-58059400 Msa0031330:five_prime_UTR 30.0%
! TTGCCAACAAATGTTTTTCA+GGG - chr1_1:58059382-58059401 Msa0031330:five_prime_UTR 30.0%
! TTCACTCTAAAAAAACTGGT+GGG - chr1_1:58059415-58059434 Msa0031330:five_prime_UTR 30.0%
TTCATTGATCTAACCATAAC+TGG - chr1_1:58059513-58059532 Msa0031330:intron 30.0%
TCATTGATCTAACCATAACT+GGG - chr1_1:58059514-58059533 Msa0031330:intron 30.0%
GCAAACAGATTTCCAAATTA+AGG + chr1_1:58059580-58059599 None:intergenic 30.0%
CTTCGTTAAAACACGATAAA+AGG + chr1_1:58059736-58059755 None:intergenic 30.0%
!!! CTTTTATCGTGTTTTAACGA+AGG - chr1_1:58059734-58059753 Msa0031330:intron 30.0%
!!! GTTGATAACATTTTCAGGAA+TGG + chr1_1:58059847-58059866 None:intergenic 30.0%
! TGTGAAGAAAAGAAGCATAA+AGG + chr1_1:58059887-58059906 None:intergenic 30.0%
!!! CCCAAATAATTTTAGAGTCT+TGG - chr1_1:58060081-58060100 Msa0031330:intron 30.0%
!! CCCAAGACTCTAAAATTATT+TGG + chr1_1:58060085-58060104 None:intergenic 30.0%
!!! TTTTATTGGGGACTAGTTAT+TGG + chr1_1:58060152-58060171 None:intergenic 30.0%
! ATGTCAGTAGGCATTTTATT+GGG + chr1_1:58060165-58060184 None:intergenic 30.0%
! AATGTCAGTAGGCATTTTAT+TGG + chr1_1:58060166-58060185 None:intergenic 30.0%
AATAAGTTGCTAGAGGAATA+GGG + chr1_1:58060201-58060220 None:intergenic 30.0%
ATGTGCAACAGTTATCTATT+AGG + chr1_1:58060255-58060274 None:intergenic 30.0%
AGTAACTGCCTAATAATAGT+AGG - chr1_1:58060303-58060322 Msa0031330:intron 30.0%
TTCCCCTCACAAAATTAAAA+AGG - chr1_1:58060415-58060434 Msa0031330:intron 30.0%
!!! AGCCTTTTTAATTTTGTGAG+GGG + chr1_1:58060420-58060439 None:intergenic 30.0%
!!! GAGCCTTTTTAATTTTGTGA+GGG + chr1_1:58060421-58060440 None:intergenic 30.0%
!!! AGAGCCTTTTTAATTTTGTG+AGG + chr1_1:58060422-58060441 None:intergenic 30.0%
CATTCATCCATCATAAACTA+TGG - chr1_1:58060457-58060476 Msa0031330:intron 30.0%
! ATCATGTGTGAGTAACATTT+TGG - chr1_1:58060495-58060514 Msa0031330:intron 30.0%
TTGCAAGATCTGTACTTTAT+TGG - chr1_1:58060591-58060610 Msa0031330:intron 30.0%
!! GGTATAAGTTTTATCTGCAA+AGG + chr1_1:58060773-58060792 None:intergenic 30.0%
GTAGTAAAATTATACCCAGA+AGG + chr1_1:58060804-58060823 None:intergenic 30.0%
TACTAAAAACTGATGCTTTC+AGG - chr1_1:58060831-58060850 Msa0031330:intron 30.0%
! AGTTTGATTCTTTTGGACAA+AGG - chr1_1:58060864-58060883 Msa0031330:intron 30.0%
CAAAAACTACAAAAGAAAGC+TGG + chr1_1:58061020-58061039 None:intergenic 30.0%
TATCACCTAATATGAGAACA+AGG + chr1_1:58061057-58061076 None:intergenic 30.0%
TCAACAATAAACAACCATCA+TGG + chr1_1:58061105-58061124 None:intergenic 30.0%
ATTAGGATAAAATTCATCCC+TGG + chr1_1:58061276-58061295 None:intergenic 30.0%
! CCTATAGTTGACTTTGAATT+AGG + chr1_1:58061293-58061312 None:intergenic 30.0%
CCTAATTCAAAGTCAACTAT+AGG - chr1_1:58061290-58061309 Msa0031330:intron 30.0%
AGAGTTCCAAACTCAAAAAA+TGG - chr1_1:58061316-58061335 Msa0031330:intron 30.0%
! CTGTTACTTCTGCATATTAT+AGG - chr1_1:58061402-58061421 Msa0031330:intron 30.0%
GTTACTTCTGCATATTATAG+GGG - chr1_1:58061404-58061423 Msa0031330:intron 30.0%
TCTTGTTCTTTCTATGTTTG+AGG - chr1_1:58061556-58061575 Msa0031330:intron 30.0%
! TATGTTTGAGGTAAATGATC+AGG - chr1_1:58061568-58061587 Msa0031330:intron 30.0%
TTTCTCACTAAACTTGACAT+TGG - chr1_1:58061600-58061619 Msa0031330:intron 30.0%
! TGAAAATTAATGGCCCTTTT+TGG - chr1_1:58061649-58061668 Msa0031330:intron 30.0%
! GAAAATTAATGGCCCTTTTT+GGG - chr1_1:58061650-58061669 Msa0031330:intron 30.0%
! AAAATTAATGGCCCTTTTTG+GGG - chr1_1:58061651-58061670 Msa0031330:intron 30.0%
CATTAAACTTACCCCAAAAA+GGG + chr1_1:58061665-58061684 None:intergenic 30.0%
!! ATGGCCTTATAGTACTTATA+TGG - chr1_1:58061682-58061701 Msa0031330:intron 30.0%
AGGACCATATAAGTACTATA+AGG + chr1_1:58061689-58061708 None:intergenic 30.0%
!!! GTATATGCTTTTAAGATGCT+AGG - chr1_1:58061906-58061925 Msa0031330:intron 30.0%
! GGCTAATGGTTTACTATTTT+AGG - chr1_1:58062087-58062106 Msa0031330:intron 30.0%
TACATGTACACACATATTGA+TGG - chr1_1:58062208-58062227 Msa0031330:intron 30.0%
AAACATGTACTCGCATATAT+TGG - chr1_1:58062265-58062284 Msa0031330:intron 30.0%
TGATCTTAATGTTTGCTCAA+AGG - chr1_1:58062762-58062781 Msa0031330:five_prime_UTR 30.0%
! ATGTTTGCTCAAAGGAATTT+TGG - chr1_1:58062770-58062789 Msa0031330:five_prime_UTR 30.0%
!!! GAATTTTGGAGTAGAAATTG+TGG - chr1_1:58062784-58062803 Msa0031330:five_prime_UTR 30.0%
GTGTTCAATTAATGAAACTG+CGG + chr1_1:58062856-58062875 None:intergenic 30.0%
! GCGTAATAAATTTTTCTCCG+AGG - chr1_1:58057403-58057422 Msa0031330:three_prime_UTR 35.0%
GCAAATCAAATGAGAGAGAA+GGG + chr1_1:58057485-58057504 None:intergenic 35.0%
AGCAAATCAAATGAGAGAGA+AGG + chr1_1:58057486-58057505 None:intergenic 35.0%
GAGTAAACTGAAATTTGAGC+AGG + chr1_1:58057681-58057700 None:intergenic 35.0%
GTATGTACTCGTAACAAGTT+AGG + chr1_1:58057769-58057788 None:intergenic 35.0%
!!! ATTTTGAAGTCTATCCATCG+AGG + chr1_1:58057956-58057975 None:intergenic 35.0%
! AGCATATAGAACCATTGGTT+AGG - chr1_1:58058031-58058050 Msa0031330:intron 35.0%
TAATCTACACTCCTAACCAA+TGG + chr1_1:58058045-58058064 None:intergenic 35.0%
! TAGGAGTGTAGATTAGATAG+AGG - chr1_1:58058050-58058069 Msa0031330:intron 35.0%
ACCATTAAAAGAGGTTTGGA+TGG - chr1_1:58058315-58058334 Msa0031330:intron 35.0%
GTCCCAGATATAAAGTCATT+TGG - chr1_1:58058540-58058559 Msa0031330:intron 35.0%
CACCCAAATGACTTTATATC+TGG + chr1_1:58058546-58058565 None:intergenic 35.0%
TCTTGATATTGTCTTGCCTT+TGG - chr1_1:58058685-58058704 Msa0031330:intron 35.0%
! AAGTGTAAGTTGGAGTTCAA+AGG - chr1_1:58058830-58058849 Msa0031330:CDS 35.0%
CCATATTAGAAATCGTGGTT+GGG + chr1_1:58059072-58059091 None:intergenic 35.0%
ACCATATTAGAAATCGTGGT+TGG + chr1_1:58059073-58059092 None:intergenic 35.0%
TGTTATCAGGTTTCCGTTAT+CGG - chr1_1:58059125-58059144 Msa0031330:exon 35.0%
TGAAGCGTGAACATAAATGA+CGG + chr1_1:58059156-58059175 None:intergenic 35.0%
TCTTGAGTCGAATCTCTAAA+AGG + chr1_1:58059333-58059352 None:intergenic 35.0%
!! TGCCAACAAATGTTTTTCAG+GGG - chr1_1:58059383-58059402 Msa0031330:five_prime_UTR 35.0%
! GTTCACTCTAAAAAAACTGG+TGG - chr1_1:58059414-58059433 Msa0031330:five_prime_UTR 35.0%
TAACACCTCAACGTATTACA+GGG + chr1_1:58059962-58059981 None:intergenic 35.0%
ATAACACCTCAACGTATTAC+AGG + chr1_1:58059963-58059982 None:intergenic 35.0%
!!! TCATTTTTTTCCCTGGCATA+CGG + chr1_1:58059986-58060005 None:intergenic 35.0%
AGTAGCCATATGATAGAAAC+TGG - chr1_1:58060016-58060035 Msa0031330:intron 35.0%
TGGTACCAGTTTCTATCATA+TGG + chr1_1:58060024-58060043 None:intergenic 35.0%
! TGTCAGTAGGCATTTTATTG+GGG + chr1_1:58060164-58060183 None:intergenic 35.0%
GAATAAGTTGCTAGAGGAAT+AGG + chr1_1:58060202-58060221 None:intergenic 35.0%
ACTAGAGAATAAGTTGCTAG+AGG + chr1_1:58060208-58060227 None:intergenic 35.0%
GTGTTAGGCCTACTATTATT+AGG + chr1_1:58060314-58060333 None:intergenic 35.0%
! TCTAAAACATCATGTTCTGG+AGG + chr1_1:58060348-58060367 None:intergenic 35.0%
!! TGAGTAACATTTTGGCACTA+AGG - chr1_1:58060503-58060522 Msa0031330:intron 35.0%
!! GAGTAACATTTTGGCACTAA+GGG - chr1_1:58060504-58060523 Msa0031330:intron 35.0%
!! AGTAACATTTTGGCACTAAG+GGG - chr1_1:58060505-58060524 Msa0031330:intron 35.0%
AAAATTATACCCAGAAGGGA+AGG + chr1_1:58060799-58060818 None:intergenic 35.0%
TACCTTATGAAGCAACAGTT+GGG + chr1_1:58060929-58060948 None:intergenic 35.0%
ATACCTTATGAAGCAACAGT+TGG + chr1_1:58060930-58060949 None:intergenic 35.0%
AAACTACAAAAGAAAGCTGG+AGG + chr1_1:58061017-58061036 None:intergenic 35.0%
CTGATCCTTGTTCTCATATT+AGG - chr1_1:58061049-58061068 Msa0031330:intron 35.0%
TAAACAACCATCATGGATTC+TGG + chr1_1:58061098-58061117 None:intergenic 35.0%
TAATGAAGAAGAGAAGACAG+AGG - chr1_1:58061181-58061200 Msa0031330:intron 35.0%
! TTAATTGGTGATTCAGCTGT+TGG - chr1_1:58061224-58061243 Msa0031330:intron 35.0%
! TAATTGGTGATTCAGCTGTT+GGG - chr1_1:58061225-58061244 Msa0031330:intron 35.0%
CCATTAAACTTACCCCAAAA+AGG + chr1_1:58061666-58061685 None:intergenic 35.0%
!!! CCTTTTTGGGGTAAGTTTAA+TGG - chr1_1:58061663-58061682 Msa0031330:intron 35.0%
TACAGAATAAAATCGCCTCA+AGG + chr1_1:58061750-58061769 None:intergenic 35.0%
TGAAGAGAGTGATACTTCAA+AGG - chr1_1:58062066-58062085 Msa0031330:intron 35.0%
AGTGATACTTCAAAGGCTAA+TGG - chr1_1:58062073-58062092 Msa0031330:intron 35.0%
ATGTCGAAGAATAACAAGAC+TGG + chr1_1:58062189-58062208 None:intergenic 35.0%
GAAATGATGATTAAGTGCAC+TGG - chr1_1:58062304-58062323 Msa0031330:intron 35.0%
! AGTCTTTCCATTTTCAATCC+AGG + chr1_1:58062588-58062607 None:intergenic 35.0%
ACTGTTGTTCTACAACAAGA+AGG - chr1_1:58062605-58062624 Msa0031330:intron 35.0%
CTGTTGTTCTACAACAAGAA+GGG - chr1_1:58062606-58062625 Msa0031330:intron 35.0%
TGTTGTTCTACAACAAGAAG+GGG - chr1_1:58062607-58062626 Msa0031330:intron 35.0%
ATCAATCCTGAATAACCTAG+CGG + chr1_1:58062746-58062765 None:intergenic 35.0%
GCACTTCAAGCACAATTAAA+AGG - chr1_1:58062809-58062828 Msa0031330:five_prime_UTR 35.0%
! CCTGTCTATTAACTTTTTGC+AGG + chr1_1:58062878-58062897 None:intergenic 35.0%
CCTGCAAAAAGTTAATAGAC+AGG - chr1_1:58062875-58062894 Msa0031330:intron 35.0%
AAGGAGGAAAGGGATTGATT+GGG + chr1_1:58057529-58057548 None:intergenic 40.0%
TATGCGATTGAAGGAGGAAA+GGG + chr1_1:58057539-58057558 None:intergenic 40.0%
ATATGCGATTGAAGGAGGAA+AGG + chr1_1:58057540-58057559 None:intergenic 40.0%
TGATGCTGATATGCGATTGA+AGG + chr1_1:58057548-58057567 None:intergenic 40.0%
GCTTGAGCATATAGAACCAT+TGG - chr1_1:58058026-58058045 Msa0031330:intron 40.0%
ATGTTTACATGGTGTCTGTG+TGG + chr1_1:58058129-58058148 None:intergenic 40.0%
AGTGTGGTTAACCTGAGATA+GGG + chr1_1:58058215-58058234 None:intergenic 40.0%
! GCCATCCAAACCTCTTTTAA+TGG + chr1_1:58058319-58058338 None:intergenic 40.0%
TTAAGGTCAGGTAAGCTACA+AGG + chr1_1:58058388-58058407 None:intergenic 40.0%
GTCTTTCTCTCATTAAGGTC+AGG + chr1_1:58058400-58058419 None:intergenic 40.0%
TTCAGACATGAGATCCCTTT+GGG + chr1_1:58058517-58058536 None:intergenic 40.0%
TCACCCTGCATCATAAACTT+TGG - chr1_1:58058569-58058588 Msa0031330:intron 40.0%
GCACCAAAGTTTATGATGCA+GGG + chr1_1:58058575-58058594 None:intergenic 40.0%
AGCACCAAAGTTTATGATGC+AGG + chr1_1:58058576-58058595 None:intergenic 40.0%
ACAAGGAGAGAAGTTGTTTG+AGG - chr1_1:58058865-58058884 Msa0031330:CDS 40.0%
AAGTGTTAAGAGTCCCACAT+CGG - chr1_1:58058967-58058986 Msa0031330:CDS 40.0%
CCCAACCACGATTTCTAATA+TGG - chr1_1:58059069-58059088 Msa0031330:CDS 40.0%
!! GATAACGGAAACCTGATAAC+AGG + chr1_1:58059126-58059145 None:intergenic 40.0%
GTTATCAGGTTTCCGTTATC+GGG - chr1_1:58059126-58059145 Msa0031330:exon 40.0%
GAAGCGTGAACATAAATGAC+GGG + chr1_1:58059155-58059174 None:intergenic 40.0%
GTCCCCTGAAAAACATTTGT+TGG + chr1_1:58059388-58059407 None:intergenic 40.0%
GGAAGTTCAATAACCTTCGT+TGG - chr1_1:58059790-58059809 Msa0031330:intron 40.0%
TCTTCACATATGCAACCTCA+AGG - chr1_1:58059899-58059918 Msa0031330:intron 40.0%
!!! AGTGCTGTCATTTTTTTCCC+TGG + chr1_1:58059993-58060012 None:intergenic 40.0%
! TAGTTATTGGTTGGGAGAAC+CGG + chr1_1:58060139-58060158 None:intergenic 40.0%
!! TTGGGGACTAGTTATTGGTT+GGG + chr1_1:58060147-58060166 None:intergenic 40.0%
!! ATTGGGGACTAGTTATTGGT+TGG + chr1_1:58060148-58060167 None:intergenic 40.0%
ATCTGAAGGACAATGTCAGT+AGG + chr1_1:58060177-58060196 None:intergenic 40.0%
TAGAGGAATAGGGAATCTGA+AGG + chr1_1:58060191-58060210 None:intergenic 40.0%
TAGGAAGCAGTTACGTTTCT+TGG + chr1_1:58060236-58060255 None:intergenic 40.0%
!! ATATCCCCTTATCCGCTTTT+TGG - chr1_1:58060563-58060582 Msa0031330:intron 40.0%
ATGACCAAAAAGCGGATAAG+GGG + chr1_1:58060570-58060589 None:intergenic 40.0%
CATGACCAAAAAGCGGATAA+GGG + chr1_1:58060571-58060590 None:intergenic 40.0%
ACATGACCAAAAAGCGGATA+AGG + chr1_1:58060572-58060591 None:intergenic 40.0%
CTTGCAACATGACCAAAAAG+CGG + chr1_1:58060578-58060597 None:intergenic 40.0%
! GATTCTTTTGGACAAAGGTC+TGG - chr1_1:58060869-58060888 Msa0031330:intron 40.0%
!! GTTGATTTGTTTCTACCCAC+CGG - chr1_1:58061120-58061139 Msa0031330:intron 40.0%
ATTTACTCGCAAGATTTGCC+AGG - chr1_1:58061255-58061274 Msa0031330:intron 40.0%
TTTACTCGCAAGATTTGCCA+GGG - chr1_1:58061256-58061275 Msa0031330:intron 40.0%
AGGAAGTTAAAGCGCAGATA+TGG - chr1_1:58061351-58061370 Msa0031330:intron 40.0%
GGAAGTTAAAGCGCAGATAT+GGG - chr1_1:58061352-58061371 Msa0031330:intron 40.0%
TTCTGGTATATGACATCAGC+AGG - chr1_1:58061441-58061460 Msa0031330:five_prime_UTR 40.0%
! CGTCAAACGTTTGATAGCAT+TGG - chr1_1:58061464-58061483 Msa0031330:five_prime_UTR 40.0%
CCTCAAGGAAAAGAATGAAG+AGG + chr1_1:58061735-58061754 None:intergenic 40.0%
! CCTCTTCATTCTTTTCCTTG+AGG - chr1_1:58061732-58061751 Msa0031330:intron 40.0%
CATGTACTCGCATATATTGG+TGG - chr1_1:58062268-58062287 Msa0031330:intron 40.0%
TGGGAACAAGTCAGATCTTA+AGG - chr1_1:58062376-58062395 Msa0031330:intron 40.0%
! GGCACAAGGTTTGTTCTTTA+TGG - chr1_1:58062442-58062461 Msa0031330:intron 40.0%
CTACAACATATTAAGCCGGA+AGG - chr1_1:58062526-58062545 Msa0031330:intron 40.0%
CTTGAGACATCATAACCTTC+CGG + chr1_1:58062544-58062563 None:intergenic 40.0%
TCAAGAAAGATGATGCTTCC+TGG - chr1_1:58062567-58062586 Msa0031330:intron 40.0%
GATGCTTCCTGGATTGAAAA+TGG - chr1_1:58062578-58062597 Msa0031330:intron 40.0%
! AAGGGGTTGTTGTTCGAAAT+AGG - chr1_1:58062655-58062674 Msa0031330:intron 40.0%
! AATAACCTAGCGGCATTTTC+AGG + chr1_1:58062736-58062755 None:intergenic 40.0%
AAAATGCCGCTAGGTTATTC+AGG - chr1_1:58062737-58062756 Msa0031330:five_prime_UTR 40.0%
GGAAAGGGATTGATTGGGTT+TGG + chr1_1:58057524-58057543 None:intergenic 45.0%
GAAGGAGGAAAGGGATTGAT+TGG + chr1_1:58057530-58057549 None:intergenic 45.0%
TGCTGATATGCGATTGAAGG+AGG + chr1_1:58057545-58057564 None:intergenic 45.0%
CGACATCATCACATTCGTTC+TGG - chr1_1:58057877-58057896 Msa0031330:CDS 45.0%
GCTTGACTTTGTAACCTCGA+TGG - chr1_1:58057939-58057958 Msa0031330:CDS 45.0%
GAGTGTGGTTAACCTGAGAT+AGG + chr1_1:58058216-58058235 None:intergenic 45.0%
AAACACACTCAGCATGAGTG+TGG + chr1_1:58058231-58058250 None:intergenic 45.0%
CTTCAGACATGAGATCCCTT+TGG + chr1_1:58058518-58058537 None:intergenic 45.0%
AGTTGGAGTTCAAAGGACTG+AGG - chr1_1:58058837-58058856 Msa0031330:CDS 45.0%
GTTGGAGTTCAAAGGACTGA+GGG - chr1_1:58058838-58058857 Msa0031330:CDS 45.0%
TTGGAGTTCAAAGGACTGAG+GGG - chr1_1:58058839-58058858 Msa0031330:CDS 45.0%
AAAGGACTGAGGGGAAAACA+AGG - chr1_1:58058848-58058867 Msa0031330:CDS 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr1_1:58058972-58058991 Msa0031330:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr1_1:58059048-58059067 None:intergenic 45.0%
AGAGCCTCTTCACGATTCTT+TGG - chr1_1:58059096-58059115 Msa0031330:CDS 45.0%
GAGCCTCTTCACGATTCTTT+GGG - chr1_1:58059097-58059116 Msa0031330:CDS 45.0%
AACGGAAACCTGATAACAGG+TGG + chr1_1:58059123-58059142 None:intergenic 45.0%
ATGTGTAATCCTGAGCGTGA+GGG - chr1_1:58059177-58059196 Msa0031330:five_prime_UTR 45.0%
GTGTGTTAAGAGTCCCACAT+CGG - chr1_1:58059201-58059220 Msa0031330:five_prime_UTR 45.0%
! TTAAGAGTCCCACATCGGTT+AGG - chr1_1:58058972-58058991 Msa0031330:CDS 45.0%
CTAACACAACCCCACAAAAC+CGG + chr1_1:58059048-58059067 None:intergenic 45.0%
ATCTAACCATAACTGGGCTG+TGG - chr1_1:58059520-58059539 Msa0031330:intron 45.0%
TCTAACCATAACTGGGCTGT+GGG - chr1_1:58059521-58059540 Msa0031330:intron 45.0%
! TGTGGGAAGTGACTTTTTGC+AGG - chr1_1:58059538-58059557 Msa0031330:intron 45.0%
AACCTTCGTTGGAAGACTTC+TGG - chr1_1:58059801-58059820 Msa0031330:intron 45.0%
ATCCAGAAGTCTTCCAACGA+AGG + chr1_1:58059806-58059825 None:intergenic 45.0%
TCACATATGCAACCTCAAGG+TGG - chr1_1:58059902-58059921 Msa0031330:intron 45.0%
TATGCAACCTCAAGGTGGAA+AGG - chr1_1:58059907-58059926 Msa0031330:intron 45.0%
TCCATCCAAGAATGAGAGCT+TGG - chr1_1:58060109-58060128 Msa0031330:intron 45.0%
ACCAAGCTCTCATTCTTGGA+TGG + chr1_1:58060113-58060132 None:intergenic 45.0%
GAGAACCAAGCTCTCATTCT+TGG + chr1_1:58060117-58060136 None:intergenic 45.0%
! AGAATGAGAGCTTGGTTCTC+CGG - chr1_1:58060117-58060136 Msa0031330:intron 45.0%
!! ACATCATGTTCTGGAGGAGA+GGG + chr1_1:58060342-58060361 None:intergenic 45.0%
!! AACATCATGTTCTGGAGGAG+AGG + chr1_1:58060343-58060362 None:intergenic 45.0%
TTATACCCAGAAGGGAAGGA+GGG + chr1_1:58060795-58060814 None:intergenic 45.0%
ATTATACCCAGAAGGGAAGG+AGG + chr1_1:58060796-58060815 None:intergenic 45.0%
! CACCCAACTGTTGCTTCATA+AGG - chr1_1:58060924-58060943 Msa0031330:intron 45.0%
GAGAAAGCCAGAATCCATGA+TGG - chr1_1:58061088-58061107 Msa0031330:intron 45.0%
! GCATATTATAGGGGTGCAGT+TGG - chr1_1:58061413-58061432 Msa0031330:intron 45.0%
!! CGTTTGATAGCATTGGTCGA+TGG - chr1_1:58061471-58061490 Msa0031330:five_prime_UTR 45.0%
AGATCTTAAGGATGCGAGAG+AGG - chr1_1:58062388-58062407 Msa0031330:intron 45.0%
AGCAGAAGGGGAGACAAAAA+GGG - chr1_1:58062637-58062656 Msa0031330:intron 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr1_1:58060044-58060063 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - chr1_1:58061989-58062008 Msa0031330:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGAA+GGG - chr1_1:58061990-58062009 Msa0031330:intron 5.0%
! CTTTTCTTTGCGTTGCGCCT+CGG + chr1_1:58057423-58057442 None:intergenic 50.0%
! GTGAGTTGACACCACATGGA+CGG + chr1_1:58057911-58057930 None:intergenic 50.0%
! TCCATGTGGTGTCAACTCAC+TGG - chr1_1:58057911-58057930 Msa0031330:CDS 50.0%
! ACCAGTGAGTTGACACCACA+TGG + chr1_1:58057915-58057934 None:intergenic 50.0%
TTTGGGCATGAAACCGGACA+AGG + chr1_1:58058500-58058519 None:intergenic 50.0%
TTGTCCGGTTTCATGCCCAA+AGG - chr1_1:58058499-58058518 Msa0031330:intron 50.0%
TGTCCGGTTTCATGCCCAAA+GGG - chr1_1:58058500-58058519 Msa0031330:intron 50.0%
GATCCCTTTGGGCATGAAAC+CGG + chr1_1:58058506-58058525 None:intergenic 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr1_1:58059035-58059054 Msa0031330:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr1_1:58059046-58059065 Msa0031330:CDS 50.0%
TGGCCCAAAGAATCGTGAAG+AGG + chr1_1:58059103-58059122 None:intergenic 50.0%
TCTTTGGGCCACCTGTTATC+AGG - chr1_1:58059112-58059131 Msa0031330:CDS 50.0%
! GCGTGAACATAAATGACGGG+TGG + chr1_1:58059152-58059171 None:intergenic 50.0%
GATGTGTAATCCTGAGCGTG+AGG - chr1_1:58059176-58059195 Msa0031330:five_prime_UTR 50.0%
TGTGTAATCCTGAGCGTGAG+GGG - chr1_1:58059178-58059197 Msa0031330:five_prime_UTR 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG - chr1_1:58059035-58059054 Msa0031330:CDS 50.0%
!! CGGTTTTGTGGGGTTGTGTT+AGG - chr1_1:58059046-58059065 Msa0031330:CDS 50.0%
AGCTGCAAGCTTGATGCAGA+GGG + chr1_1:58059494-58059513 None:intergenic 50.0%
AAGCTGCAAGCTTGATGCAG+AGG + chr1_1:58059495-58059514 None:intergenic 50.0%
TTGTGTGCCTTTCCACCTTG+AGG + chr1_1:58059917-58059936 None:intergenic 50.0%
! TCAAGGTGGAAAGGCACACA+AGG - chr1_1:58059916-58059935 Msa0031330:intron 50.0%
! AAAGGCACACAAGGAACCCA+TGG - chr1_1:58059925-58059944 Msa0031330:intron 50.0%
AAGGCACACAAGGAACCCAT+GGG - chr1_1:58059926-58059945 Msa0031330:intron 50.0%
AGCCACCCTGTAATACGTTG+AGG - chr1_1:58059954-58059973 Msa0031330:intron 50.0%
CACCTCAACGTATTACAGGG+TGG + chr1_1:58059959-58059978 None:intergenic 50.0%
! TGAGGTGTTATCCGTATGCC+AGG - chr1_1:58059972-58059991 Msa0031330:intron 50.0%
! GAGGTGTTATCCGTATGCCA+GGG - chr1_1:58059973-58059992 Msa0031330:intron 50.0%
GAGGAGAGGGATATGGTGTT+AGG + chr1_1:58060329-58060348 None:intergenic 50.0%
!! TGTTCTGGAGGAGAGGGATA+TGG + chr1_1:58060336-58060355 None:intergenic 50.0%
TTATACCCCTCCTTCCCTTC+TGG - chr1_1:58060786-58060805 Msa0031330:intron 50.0%
TATACCCCTCCTTCCCTTCT+GGG - chr1_1:58060787-58060806 Msa0031330:intron 50.0%
TATACCCAGAAGGGAAGGAG+GGG + chr1_1:58060794-58060813 None:intergenic 50.0%
GACAAAGGTCTGGATGCTGA+TGG - chr1_1:58060879-58060898 Msa0031330:intron 50.0%
AAAGGTCTGGATGCTGATGG+TGG - chr1_1:58060882-58060901 Msa0031330:intron 50.0%
!! AGAGTTGCTGACTTTCCGGT+GGG + chr1_1:58061138-58061157 None:intergenic 50.0%
!! AAGAGTTGCTGACTTTCCGG+TGG + chr1_1:58061139-58061158 None:intergenic 50.0%
ACCGGAAAGTCAGCAACTCT+TGG - chr1_1:58061138-58061157 Msa0031330:intron 50.0%
!! CCCAAGAGTTGCTGACTTTC+CGG + chr1_1:58061142-58061161 None:intergenic 50.0%
CCGGAAAGTCAGCAACTCTT+GGG - chr1_1:58061139-58061158 Msa0031330:intron 50.0%
CAACTCTTGGGACTCACAGA+TGG - chr1_1:58061151-58061170 Msa0031330:intron 50.0%
AAGGGGATCGATCAGCAGAA+GGG - chr1_1:58062624-58062643 Msa0031330:intron 50.0%
CAGCAGAAGGGGAGACAAAA+AGG - chr1_1:58062636-58062655 Msa0031330:intron 50.0%
GCAGAAGGGGAGACAAAAAG+GGG - chr1_1:58062638-58062657 Msa0031330:intron 50.0%
!!! CCTAGCGGCATTTTCAGGTT+TGG + chr1_1:58062731-58062750 None:intergenic 50.0%
CCAAACCTGAAAATGCCGCT+AGG - chr1_1:58062728-58062747 Msa0031330:five_prime_UTR 50.0%
TGGACCAATGTCCGTCCATG+TGG - chr1_1:58057897-58057916 Msa0031330:CDS 55.0%
GACACCACATGGACGGACAT+TGG + chr1_1:58057904-58057923 None:intergenic 55.0%
CCAGAAACCTCTGCCTTGTC+CGG - chr1_1:58058484-58058503 Msa0031330:intron 55.0%
CATGAAACCGGACAAGGCAG+AGG + chr1_1:58058494-58058513 None:intergenic 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr1_1:58058978-58058997 Msa0031330:CDS 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr1_1:58058983-58059002 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr1_1:58058984-58059003 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr1_1:58059026-58059045 Msa0031330:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr1_1:58059034-58059053 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr1_1:58059034-58059053 Msa0031330:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr1_1:58059036-58059055 Msa0031330:CDS 55.0%
!! AATGACGGGTGGCCCGATAA+CGG + chr1_1:58059141-58059160 None:intergenic 55.0%
GTGTAATCCTGAGCGTGAGG+GGG - chr1_1:58059179-58059198 Msa0031330:five_prime_UTR 55.0%
! GTCCCACATCGGTTAGGAGT+TGG - chr1_1:58058978-58058997 Msa0031330:CDS 55.0%
GGCCAACTCCTAACCGATGT+GGG + chr1_1:58058983-58059002 None:intergenic 55.0%
AGGCCAACTCCTAACCGATG+TGG + chr1_1:58058984-58059003 None:intergenic 55.0%
GCAATCCTCACCTCACAAGC+CGG - chr1_1:58059026-58059045 Msa0031330:CDS 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG + chr1_1:58059034-58059053 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG - chr1_1:58059034-58059053 Msa0031330:CDS 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG - chr1_1:58059036-58059055 Msa0031330:CDS 55.0%
GCAAGCTTGATGCAGAGGGA+GGG + chr1_1:58059490-58059509 None:intergenic 55.0%
TGCAAGCTTGATGCAGAGGG+AGG + chr1_1:58059491-58059510 None:intergenic 55.0%
CACTTCCCACAGCCCAGTTA+TGG + chr1_1:58059529-58059548 None:intergenic 55.0%
CGCAGATATGGGACACAGCT+GGG - chr1_1:58061363-58061382 Msa0031330:intron 55.0%
!! TGCGAGAGAGGTACCTACGA+CGG - chr1_1:58062400-58062419 Msa0031330:intron 55.0%
!! AGAGAGGTACCTACGACGGA+AGG - chr1_1:58062404-58062423 Msa0031330:intron 55.0%
! AAGGCGTTAGCTGAGGCACA+AGG - chr1_1:58062428-58062447 Msa0031330:intron 55.0%
GAAGGGGATCGATCAGCAGA+AGG - chr1_1:58062623-58062642 Msa0031330:intron 55.0%
AGGGGATCGATCAGCAGAAG+GGG - chr1_1:58062625-58062644 Msa0031330:intron 55.0%
CCGGACAAGGCAGAGGTTTC+TGG + chr1_1:58058487-58058506 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr1_1:58059039-58059058 None:intergenic 60.0%
TAACACACCCCCTCACGCTC+AGG + chr1_1:58059189-58059208 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG + chr1_1:58059039-58059058 None:intergenic 60.0%
CAGGGTGGCTTAGCACCCAT+GGG + chr1_1:58059944-58059963 None:intergenic 60.0%
ACAGGGTGGCTTAGCACCCA+TGG + chr1_1:58059945-58059964 None:intergenic 60.0%
GCGCAGATATGGGACACAGC+TGG - chr1_1:58061362-58061381 Msa0031330:intron 60.0%
! GGGTGCAGTTGGAGCACTTC+TGG - chr1_1:58061424-58061443 Msa0031330:five_prime_UTR 60.0%
GGTACCTACGACGGAAGGCA+AGG - chr1_1:58062409-58062428 Msa0031330:intron 60.0%
AACGCCTTGCCTTCCGTCGT+AGG + chr1_1:58062416-58062435 None:intergenic 60.0%
! GGAAGGCAAGGCGTTAGCTG+AGG - chr1_1:58062421-58062440 Msa0031330:intron 60.0%
GGGACACAGCTGGGCAAGAG+AGG - chr1_1:58061372-58061391 Msa0031330:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 58057370 58062931 58057370 ID=Msa0031330;Name=Msa0031330
chr1_1 mRNA 58057370 58062931 58057370 ID=Msa0031330-mRNA-1;Parent=Msa0031330;Name=Msa0031330-mRNA-1;_AED=0.04;_eAED=0.04;_QI=463|1|1|1|0.2|0.16|6|255|224
chr1_1 exon 58057370 58057959 58057370 ID=Msa0031330-mRNA-1:exon:17643;Parent=Msa0031330-mRNA-1
chr1_1 exon 58058792 58059230 58058792 ID=Msa0031330-mRNA-1:exon:17642;Parent=Msa0031330-mRNA-1
chr1_1 exon 58059356 58059448 58059356 ID=Msa0031330-mRNA-1:exon:17641;Parent=Msa0031330-mRNA-1
chr1_1 exon 58061415 58061493 58061415 ID=Msa0031330-mRNA-1:exon:17640;Parent=Msa0031330-mRNA-1
chr1_1 exon 58062719 58062889 58062719 ID=Msa0031330-mRNA-1:exon:17639;Parent=Msa0031330-mRNA-1
chr1_1 exon 58062911 58062931 58062911 ID=Msa0031330-mRNA-1:exon:17638;Parent=Msa0031330-mRNA-1
chr1_1 five_prime_UTR 58062911 58062931 58062911 ID=Msa0031330-mRNA-1:five_prime_utr;Parent=Msa0031330-mRNA-1
chr1_1 five_prime_UTR 58062719 58062889 58062719 ID=Msa0031330-mRNA-1:five_prime_utr;Parent=Msa0031330-mRNA-1
chr1_1 five_prime_UTR 58061415 58061493 58061415 ID=Msa0031330-mRNA-1:five_prime_utr;Parent=Msa0031330-mRNA-1
chr1_1 five_prime_UTR 58059356 58059448 58059356 ID=Msa0031330-mRNA-1:five_prime_utr;Parent=Msa0031330-mRNA-1
chr1_1 five_prime_UTR 58059132 58059230 58059132 ID=Msa0031330-mRNA-1:five_prime_utr;Parent=Msa0031330-mRNA-1
chr1_1 CDS 58058792 58059131 58058792 ID=Msa0031330-mRNA-1:cds;Parent=Msa0031330-mRNA-1
chr1_1 CDS 58057625 58057959 58057625 ID=Msa0031330-mRNA-1:cds;Parent=Msa0031330-mRNA-1
chr1_1 three_prime_UTR 58057370 58057624 58057370 ID=Msa0031330-mRNA-1:three_prime_utr;Parent=Msa0031330-mRNA-1
Gene Sequence

>Msa0031330

ATGGCATTTAATAATGAAGAAGAGAAGACAGAGGATTACCTTTTCAAAATTGTCTTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTACTCGCAAGATTTGCCAGGGATGAATTTTATCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACTCAAAAAATGGAAATTAACGGAAAGGAAGTTAAAGCGCAGATATGGGACACAGCTGGGCAAGAGAGGTTCAGAGCTGTTACTTCTGCATATTATAGGGGTGCAGTTGGAGCACTTCTGGTATATGACATCAGCAGGCGTCAAACGTTTGATAGCATTGGTCGATGGCTTAACGAACTTCACACTCACTCTGATATGAACGTTGTCACAATACTTGTTGGGAACAAGTCAGATCTTAAGGATGCGAGAGAGGTACCTACGACGGAAGGCAAGGCGTTAGCTGAGGCACAAGGTTTGTTCTTTATGGAGACATCAGCACTTGATTCATCAAATGTAGTTGCTGCTTTTCAAACAGTTGTAAAAGAAATCTACAACATATTAAGCCGGAAGGTTATGATGTCTCAAGAGCTCAAGAAAGATGATGCTTCCTGGATTGAAAATGGAAAGACTGTTGTTCTACAACAAGAAGGGGATCGATCAGCAGAAGGGGAGACAAAAAGGGGTTGTTGTTCGAAATAG
Protein sequence

>Msa0031330

MAFNNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTTEGKALAEAQGLFFMETSALDSSNVVAAFQTVVKEIYNILSRKVMMSQELKKDDASWIENGKTVVLQQEGDRSAEGETKRGCCSK*