Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08793.t1 | XP_003629679.1 | 98.3 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 4.20E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08793.t1 | Q9BZV1 | 45.9 | 61 | 33 | 0 | 311 | 371 | 166 | 226 | 1.4e-08 | 62.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08793.t1 | G7LHW1 | 98.3 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 3.0e-150 | 541.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049129 | MS.gene08793 | -0.816608 | 5.07E-52 | -1.69E-46 |
| MS.gene049142 | MS.gene08793 | 0.822793 | 1.96E-53 | -1.69E-46 |
| MS.gene049166 | MS.gene08793 | 0.833805 | 4.32E-56 | -1.69E-46 |
| MS.gene04918 | MS.gene08793 | 0.834346 | 3.16E-56 | -1.69E-46 |
| MS.gene04919 | MS.gene08793 | 0.80266 | 5.05E-49 | -1.69E-46 |
| MS.gene04920 | MS.gene08793 | 0.826045 | 3.36E-54 | -1.69E-46 |
| MS.gene049255 | MS.gene08793 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene08793 | 0.842648 | 2.27E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene08793 | 0.839845 | 1.24E-57 | -1.69E-46 |
| MS.gene049411 | MS.gene08793 | 0.853906 | 1.75E-61 | -1.69E-46 |
| MS.gene049499 | MS.gene08793 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene049674 | MS.gene08793 | 0.809747 | 1.62E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene08793 | 0.812385 | 4.35E-51 | -1.69E-46 |
| MS.gene049983 | MS.gene08793 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene050084 | MS.gene08793 | 0.87264 | 2.72E-67 | -1.69E-46 |
| MS.gene050085 | MS.gene08793 | 0.901309 | 3.05E-78 | -1.69E-46 |
| MS.gene050317 | MS.gene08793 | 0.815753 | 7.87E-52 | -1.69E-46 |
| MS.gene050359 | MS.gene08793 | 0.838837 | 2.27E-57 | -1.69E-46 |
| MS.gene050384 | MS.gene08793 | 0.823493 | 1.34E-53 | -1.69E-46 |
| MS.gene050386 | MS.gene08793 | 0.832582 | 8.71E-56 | -1.69E-46 |
| MS.gene050414 | MS.gene08793 | 0.812579 | 3.95E-51 | -1.69E-46 |
| MS.gene050437 | MS.gene08793 | 0.803547 | 3.31E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene08793 | 0.825666 | 4.14E-54 | -1.69E-46 |
| MS.gene050646 | MS.gene08793 | 0.855681 | 5.36E-62 | -1.69E-46 |
| MS.gene050654 | MS.gene08793 | 0.854516 | 1.17E-61 | -1.69E-46 |
| MS.gene050689 | MS.gene08793 | 0.851528 | 8.37E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene08793 | 0.881552 | 2.18E-70 | -1.69E-46 |
| MS.gene050838 | MS.gene08793 | 0.891784 | 2.90E-74 | -1.69E-46 |
| MS.gene050931 | MS.gene08793 | 0.807499 | 4.91E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene08793 | 0.810966 | 8.86E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene08793 | 0.852421 | 4.67E-61 | -1.69E-46 |
| MS.gene050955 | MS.gene08793 | 0.849691 | 2.75E-60 | -1.69E-46 |
| MS.gene051003 | MS.gene08793 | 0.917069 | 8.32E-86 | -1.69E-46 |
| MS.gene051043 | MS.gene08793 | 0.82491 | 6.25E-54 | -1.69E-46 |
| MS.gene051233 | MS.gene08793 | 0.838101 | 3.51E-57 | -1.69E-46 |
| MS.gene051234 | MS.gene08793 | 0.903731 | 2.56E-79 | -1.69E-46 |
| MS.gene051328 | MS.gene08793 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene08793 | 0.895294 | 1.10E-75 | -1.69E-46 |
| MS.gene05134 | MS.gene08793 | 0.821779 | 3.37E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene08793 | 0.838219 | 3.27E-57 | -1.69E-46 |
| MS.gene051642 | MS.gene08793 | 0.828323 | 9.58E-55 | -1.69E-46 |
| MS.gene051676 | MS.gene08793 | 0.823547 | 1.31E-53 | -1.69E-46 |
| MS.gene051748 | MS.gene08793 | 0.811485 | 6.84E-51 | -1.69E-46 |
| MS.gene051852 | MS.gene08793 | 0.818057 | 2.39E-52 | -1.69E-46 |
| MS.gene051856 | MS.gene08793 | 0.818481 | 1.92E-52 | -1.69E-46 |
| MS.gene05188 | MS.gene08793 | 0.866614 | 2.51E-65 | -1.69E-46 |
| MS.gene051902 | MS.gene08793 | 0.831138 | 1.98E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene08793 | 0.824105 | 9.66E-54 | -1.69E-46 |
| MS.gene051975 | MS.gene08793 | 0.868829 | 4.88E-66 | -1.69E-46 |
| MS.gene052072 | MS.gene08793 | 0.874227 | 7.96E-68 | -1.69E-46 |
| MS.gene052242 | MS.gene08793 | -0.831186 | 1.93E-55 | -1.69E-46 |
| MS.gene052296 | MS.gene08793 | 0.826192 | 3.10E-54 | -1.69E-46 |
| MS.gene052307 | MS.gene08793 | 0.84764 | 1.02E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene08793 | 0.822267 | 2.60E-53 | -1.69E-46 |
| MS.gene052342 | MS.gene08793 | 0.853335 | 2.56E-61 | -1.69E-46 |
| MS.gene052434 | MS.gene08793 | 0.849517 | 3.07E-60 | -1.69E-46 |
| MS.gene052518 | MS.gene08793 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene08793 | 0.828399 | 9.19E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene08793 | 0.845507 | 3.89E-59 | -1.69E-46 |
| MS.gene053058 | MS.gene08793 | 0.885132 | 1.06E-71 | -1.69E-46 |
| MS.gene053109 | MS.gene08793 | 0.812908 | 3.35E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene08793 | 0.844982 | 5.39E-59 | -1.69E-46 |
| MS.gene053167 | MS.gene08793 | 0.809353 | 1.97E-50 | -1.69E-46 |
| MS.gene053295 | MS.gene08793 | 0.803525 | 3.34E-49 | -1.69E-46 |
| MS.gene053456 | MS.gene08793 | 0.807428 | 5.08E-50 | -1.69E-46 |
| MS.gene053564 | MS.gene08793 | 0.842504 | 2.48E-58 | -1.69E-46 |
| MS.gene053590 | MS.gene08793 | 0.802592 | 5.21E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene08793 | 0.817246 | 3.64E-52 | -1.69E-46 |
| MS.gene053786 | MS.gene08793 | 0.811913 | 5.52E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene08793 | 0.803224 | 3.86E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene08793 | 0.828001 | 1.15E-54 | -1.69E-46 |
| MS.gene053952 | MS.gene08793 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene08793 | 0.874864 | 4.84E-68 | -1.69E-46 |
| MS.gene054005 | MS.gene08793 | 0.810178 | 1.31E-50 | -1.69E-46 |
| MS.gene054403 | MS.gene08793 | 0.882799 | 7.69E-71 | -1.69E-46 |
| MS.gene054413 | MS.gene08793 | 0.821123 | 4.77E-53 | -1.69E-46 |
| MS.gene054823 | MS.gene08793 | 0.808202 | 3.48E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene08793 | 0.831249 | 1.86E-55 | -1.69E-46 |
| MS.gene055311 | MS.gene08793 | 0.815801 | 7.68E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene08793 | 0.800014 | 1.76E-48 | -1.69E-46 |
| MS.gene055314 | MS.gene08793 | 0.806477 | 8.07E-50 | -1.69E-46 |
| MS.gene055424 | MS.gene08793 | 0.840211 | 9.97E-58 | -1.69E-46 |
| MS.gene055513 | MS.gene08793 | 0.851235 | 1.01E-60 | -1.69E-46 |
| MS.gene055765 | MS.gene08793 | 0.801071 | 1.07E-48 | -1.69E-46 |
| MS.gene055979 | MS.gene08793 | 0.826442 | 2.71E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene08793 | 0.806298 | 8.80E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene08793 | 0.849339 | 3.45E-60 | -1.69E-46 |
| MS.gene056181 | MS.gene08793 | 0.881559 | 2.17E-70 | -1.69E-46 |
| MS.gene056578 | MS.gene08793 | 0.831415 | 1.69E-55 | -1.69E-46 |
| MS.gene056699 | MS.gene08793 | 0.830697 | 2.54E-55 | -1.69E-46 |
| MS.gene056752 | MS.gene08793 | 0.809212 | 2.12E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene08793 | 0.847842 | 8.95E-60 | -1.69E-46 |
| MS.gene056831 | MS.gene08793 | 0.828566 | 8.37E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene08793 | 0.850642 | 1.49E-60 | -1.69E-46 |
| MS.gene056992 | MS.gene08793 | 0.801056 | 1.08E-48 | -1.69E-46 |
| MS.gene057094 | MS.gene08793 | 0.833496 | 5.16E-56 | -1.69E-46 |
| MS.gene057102 | MS.gene08793 | 0.847548 | 1.08E-59 | -1.69E-46 |
| MS.gene057234 | MS.gene08793 | 0.824215 | 9.11E-54 | -1.69E-46 |
| MS.gene057622 | MS.gene08793 | 0.815377 | 9.54E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene08793 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene08793 | 0.818939 | 1.51E-52 | -1.69E-46 |
| MS.gene05781 | MS.gene08793 | 0.867228 | 1.60E-65 | -1.69E-46 |
| MS.gene057890 | MS.gene08793 | -0.845534 | 3.83E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene08793 | 0.841799 | 3.82E-58 | -1.69E-46 |
| MS.gene058054 | MS.gene08793 | 0.859215 | 4.82E-63 | -1.69E-46 |
| MS.gene058055 | MS.gene08793 | 0.831541 | 1.57E-55 | -1.69E-46 |
| MS.gene058074 | MS.gene08793 | 0.815066 | 1.12E-51 | -1.69E-46 |
| MS.gene058149 | MS.gene08793 | 0.816067 | 6.70E-52 | -1.69E-46 |
| MS.gene058159 | MS.gene08793 | 0.82301 | 1.74E-53 | -1.69E-46 |
| MS.gene058238 | MS.gene08793 | 0.814556 | 1.45E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene08793 | 0.858364 | 8.67E-63 | -1.69E-46 |
| MS.gene058292 | MS.gene08793 | 0.839677 | 1.37E-57 | -1.69E-46 |
| MS.gene058330 | MS.gene08793 | 0.811715 | 6.09E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene08793 | 0.805958 | 1.04E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene08793 | 0.803622 | 3.19E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene08793 | 0.812831 | 3.48E-51 | -1.69E-46 |
| MS.gene058646 | MS.gene08793 | 0.82218 | 2.72E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene08793 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene058781 | MS.gene08793 | 0.813061 | 3.10E-51 | -1.69E-46 |
| MS.gene05880 | MS.gene08793 | 0.800226 | 1.59E-48 | -1.69E-46 |
| MS.gene058976 | MS.gene08793 | 0.820448 | 6.82E-53 | -1.69E-46 |
| MS.gene059007 | MS.gene08793 | 0.836197 | 1.08E-56 | -1.69E-46 |
| MS.gene059146 | MS.gene08793 | 0.922654 | 7.42E-89 | -1.69E-46 |
| MS.gene059170 | MS.gene08793 | 0.821446 | 4.02E-53 | -1.69E-46 |
| MS.gene059171 | MS.gene08793 | 0.826439 | 2.71E-54 | -1.69E-46 |
| MS.gene059227 | MS.gene08793 | 0.827924 | 1.20E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene08793 | 0.818003 | 2.46E-52 | -1.69E-46 |
| MS.gene059778 | MS.gene08793 | 0.821516 | 3.87E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene08793 | 0.804341 | 2.26E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene08793 | -0.816414 | 5.60E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene08793 | -0.8343 | 3.25E-56 | -1.69E-46 |
| MS.gene06001 | MS.gene08793 | 0.801141 | 1.04E-48 | -1.69E-46 |
| MS.gene06010 | MS.gene08793 | 0.846126 | 2.64E-59 | -1.69E-46 |
| MS.gene06011 | MS.gene08793 | 0.866345 | 3.05E-65 | -1.69E-46 |
| MS.gene060244 | MS.gene08793 | 0.811155 | 8.06E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene08793 | 0.815036 | 1.14E-51 | -1.69E-46 |
| MS.gene060365 | MS.gene08793 | 0.810073 | 1.38E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene08793 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene060563 | MS.gene08793 | 0.802812 | 4.70E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene08793 | 0.872806 | 2.40E-67 | -1.69E-46 |
| MS.gene060933 | MS.gene08793 | 0.820571 | 6.39E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene08793 | 0.838947 | 2.12E-57 | -1.69E-46 |
| MS.gene060937 | MS.gene08793 | 0.847507 | 1.11E-59 | -1.69E-46 |
| MS.gene061006 | MS.gene08793 | 0.839187 | 1.84E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene08793 | 0.882636 | 8.82E-71 | -1.69E-46 |
| MS.gene061160 | MS.gene08793 | 0.81612 | 6.51E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08793.t1 | MTR_8g085380 | 98.284 | 408 | 7 | 0 | 1 | 408 | 1 | 408 | 0.0 | 805 |
| MS.gene08793.t1 | MTR_8g013030 | 58.170 | 306 | 125 | 2 | 104 | 408 | 1 | 304 | 6.22e-118 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08793.t1 | AT1G04850 | 76.755 | 413 | 91 | 3 | 1 | 408 | 1 | 413 | 0.0 | 561 |
| MS.gene08793.t1 | AT1G04850 | 75.633 | 316 | 74 | 2 | 96 | 408 | 9 | 324 | 2.35e-140 | 403 |
| MS.gene08793.t1 | AT5G48690 | 52.997 | 317 | 141 | 6 | 98 | 408 | 2 | 316 | 8.53e-87 | 267 |
| MS.gene08793.t1 | AT5G48690 | 53.171 | 205 | 90 | 4 | 209 | 408 | 63 | 266 | 1.39e-59 | 195 |
| MS.gene08793.t1 | AT5G48690 | 53.670 | 218 | 94 | 5 | 98 | 310 | 2 | 217 | 7.07e-48 | 163 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATGGCATTTGTTTCTTC+TGG | 0.107206 | 4.2:+12914639 | None:intergenic |
| TTAGGAGCCTCTAAACTTAT+TGG | 0.215263 | 4.2:+12916042 | None:intergenic |
| GTTCAGATCCAGCTGAATTT+AGG | 0.250912 | 4.2:+12909302 | None:intergenic |
| TTCAGTGGATTCAGAGAAAT+TGG | 0.259726 | 4.2:+12916311 | None:intergenic |
| CCACATAAGTTAGAAGAGTT+TGG | 0.265357 | 4.2:+12910098 | None:intergenic |
| CTCCCTCATCTGCTCGGTTT+TGG | 0.272816 | 4.2:+12911927 | None:intergenic |
| TGGGATTCTGAATTCCCTTT+AGG | 0.291163 | 4.2:+12916024 | None:intergenic |
| TTTCAACAGCCCGTGCAATA+AGG | 0.291576 | 4.2:-12915617 | MS.gene08793:CDS |
| TGCAGAGTTTCCTGCCAATT+AGG | 0.314647 | 4.2:-12911957 | MS.gene08793:intron |
| GAATGGCATTTGTTTCTTCT+GGG | 0.341561 | 4.2:+12914640 | None:intergenic |
| CTCTACAACAGCTGCAGGCT+TGG | 0.356379 | 4.2:+12912061 | None:intergenic |
| CATTTGTTTCTTCTGGGGTA+AGG | 0.356425 | 4.2:+12914646 | None:intergenic |
| AGCAAAGCCAATAAGTTTAG+AGG | 0.359150 | 4.2:-12916049 | MS.gene08793:CDS |
| AGCTGTTGTAGAGGAGAAAA+AGG | 0.364152 | 4.2:-12912051 | MS.gene08793:intron |
| ATCACTAGTTCCACCCTCTT+GGG | 0.372205 | 4.2:+12916005 | None:intergenic |
| ACTTATTGGCTTTGCTGCTT+CGG | 0.374866 | 4.2:+12916056 | None:intergenic |
| GATCACTAGTTCCACCCTCT+TGG | 0.376605 | 4.2:+12916004 | None:intergenic |
| TTGAATTCCTTGAAATTTGC+GGG | 0.388129 | 4.2:-12909387 | MS.gene08793:CDS |
| TCTCAAACCCGCAAATTTCA+AGG | 0.390275 | 4.2:+12909380 | None:intergenic |
| TTCAGTGTGTCCAGTTCTCT+TGG | 0.403511 | 4.2:+12916095 | None:intergenic |
| TTCAACAGCCCGTGCAATAA+GGG | 0.403545 | 4.2:-12915616 | MS.gene08793:CDS |
| TTGGCTGTTGAAGGCTCCTC+TGG | 0.404673 | 4.2:+12912080 | None:intergenic |
| ATTTGTTTCTTCTGGGGTAA+GGG | 0.408133 | 4.2:+12914647 | None:intergenic |
| ATACCTTAGTTCCTTTAGAA+TGG | 0.408926 | 4.2:+12914623 | None:intergenic |
| GCCTCGAGGCTGCTGTAACT+TGG | 0.413530 | 4.2:-12914969 | MS.gene08793:CDS |
| CCAAACTCTTCTAACTTATG+TGG | 0.420810 | 4.2:-12910098 | MS.gene08793:CDS |
| TTTGCAGGTTGTTAGCTTTG+AGG | 0.421356 | 4.2:-12912357 | MS.gene08793:intron |
| TTCTCCTCTACAACAGCTGC+AGG | 0.432013 | 4.2:+12912056 | None:intergenic |
| GCTTGAGGAACTTGAATCAA+TGG | 0.436658 | 4.2:-12915643 | MS.gene08793:CDS |
| GATTTACACACCAAGAGAAC+TGG | 0.446924 | 4.2:-12916105 | MS.gene08793:CDS |
| CTTGAGGAACTTGAATCAAT+GGG | 0.458924 | 4.2:-12915642 | MS.gene08793:CDS |
| GCTGCAGGCTTGGCTGTTGA+AGG | 0.461571 | 4.2:+12912071 | None:intergenic |
| AGAAGAAGAAGAGAAGAGAA+TGG | 0.464524 | 4.2:-12913988 | MS.gene08793:CDS |
| ATTGAATTCCTTGAAATTTG+CGG | 0.466357 | 4.2:-12909388 | MS.gene08793:CDS |
| TGGTGGCAGGCCTAATTGGC+AGG | 0.466592 | 4.2:+12911947 | None:intergenic |
| TTGCGGTACTCTCTTGAAAT+CGG | 0.467068 | 4.2:-12916373 | MS.gene08793:CDS |
| GTTTCTTCTGGGGTAAGGGA+GGG | 0.467929 | 4.2:+12914651 | None:intergenic |
| AGAGAGAATCAAGCAAAAGT+TGG | 0.474657 | 4.2:-12912302 | MS.gene08793:CDS |
| TAAGTTTAGAGGCTCCTAAA+GGG | 0.480337 | 4.2:-12916038 | MS.gene08793:CDS |
| TGTTTCTTCTGGGGTAAGGG+AGG | 0.481794 | 4.2:+12914650 | None:intergenic |
| CAAACTCTTCTAACTTATGT+GGG | 0.485491 | 4.2:-12910097 | MS.gene08793:CDS |
| AAGAAGACAACGAGAGAAAA+CGG | 0.494209 | 4.2:-12912454 | MS.gene08793:intron |
| ATGCCATTCTAAAGGAACTA+AGG | 0.501820 | 4.2:-12914626 | MS.gene08793:intron |
| ACGAATCACCGGAATATGGC+AGG | 0.506192 | 4.2:-12916417 | None:intergenic |
| GCGGAAAGAAGACGAAAACT+TGG | 0.508359 | 4.2:-12912110 | MS.gene08793:CDS |
| TTTGAGGAAAGCAGAGAAAG+AGG | 0.508582 | 4.2:-12912341 | MS.gene08793:CDS |
| AATGGAGAGAGAAAGAGAAA+AGG | 0.510480 | 4.2:-12913970 | MS.gene08793:intron |
| GGAGAGAATTCGAGTCGGTA+AGG | 0.511409 | 4.2:-12912501 | MS.gene08793:CDS |
| AGAAACAAATGCCATTCTAA+AGG | 0.511452 | 4.2:-12914634 | MS.gene08793:CDS |
| ATAAGTTTAGAGGCTCCTAA+AGG | 0.517070 | 4.2:-12916039 | MS.gene08793:CDS |
| AGCTATAATCTTAAGGGAGA+AGG | 0.520095 | 4.2:-12914024 | MS.gene08793:intron |
| GAAAGAGTTGGTGCTTTGAA+AGG | 0.523288 | 4.2:-12909415 | MS.gene08793:CDS |
| AAGGGCATTTCATCTATGTC+AGG | 0.523907 | 4.2:+12914925 | None:intergenic |
| CAAGCCTGCAGCTGTTGTAG+AGG | 0.527882 | 4.2:-12912060 | MS.gene08793:CDS |
| ATTGCAGTCCTAAATTCAGC+TGG | 0.528514 | 4.2:-12909310 | MS.gene08793:CDS |
| TTGGAATGCTCTCTTCACTC+TGG | 0.530560 | 4.2:+12910117 | None:intergenic |
| CCACCAAAACCGAGCAGATG+AGG | 0.536858 | 4.2:-12911930 | MS.gene08793:CDS |
| AAGAAGACGAAAACTTGGAT+TGG | 0.539216 | 4.2:-12912105 | MS.gene08793:CDS |
| GAGCAGACGAGGTTGAGAAC+GGG | 0.547682 | 4.2:+12916288 | None:intergenic |
| AATGGCATTTGTTTCTTCTG+GGG | 0.548701 | 4.2:+12914641 | None:intergenic |
| AATGAAGTGCCCTTATTGCA+CGG | 0.554419 | 4.2:+12915607 | None:intergenic |
| ATGAAGTGCCCTTATTGCAC+GGG | 0.556855 | 4.2:+12915608 | None:intergenic |
| TGCGGGTTTGAGAAGATCGA+TGG | 0.557070 | 4.2:-12909370 | MS.gene08793:CDS |
| TCGCTCCAGTGCGGTGATTG+CGG | 0.565094 | 4.2:-12916390 | MS.gene08793:CDS |
| GCAATATCAACCTTCTCCCT+AGG | 0.569294 | 4.2:+12909328 | None:intergenic |
| GAAAAGCTGCGTTACTAAGA+CGG | 0.574213 | 4.2:+12910032 | None:intergenic |
| CAGAGAAAGAGGAAGAGCGA+AGG | 0.574752 | 4.2:-12912330 | MS.gene08793:CDS |
| TGACATAGATGAAATGCCCT+TGG | 0.574903 | 4.2:-12914923 | MS.gene08793:intron |
| CAAGCACTCCCTCATCTGCT+CGG | 0.577094 | 4.2:+12911921 | None:intergenic |
| CTATGTCAGGCGTATTCTCG+TGG | 0.577322 | 4.2:+12914938 | None:intergenic |
| GAGGTTGAGAACGGGTTCAG+TGG | 0.580165 | 4.2:+12916296 | None:intergenic |
| GGAACTAGTGATCAGAATGA+AGG | 0.581651 | 4.2:-12915994 | MS.gene08793:intron |
| CACCAAAACCGAGCAGATGA+GGG | 0.583334 | 4.2:-12911929 | MS.gene08793:CDS |
| AGAGTTGGTGCTTTGAAAGG+AGG | 0.583659 | 4.2:-12909412 | MS.gene08793:CDS |
| GGAGCAGACGAGGTTGAGAA+CGG | 0.583672 | 4.2:+12916287 | None:intergenic |
| GAGTACCGCAATCACCGCAC+TGG | 0.585883 | 4.2:+12916385 | None:intergenic |
| AGAGAAAGAGGAAGAGCGAA+GGG | 0.587718 | 4.2:-12912329 | MS.gene08793:CDS |
| AGGAGTTGCTTGAAGCAAAG+AGG | 0.588418 | 4.2:-12912481 | MS.gene08793:CDS |
| TCGGCAAGGTTTGGAGCAAG+TGG | 0.589086 | 4.2:+12916266 | None:intergenic |
| GCAAAAGTTGGAAGAAGACA+AGG | 0.592876 | 4.2:-12912290 | MS.gene08793:intron |
| TGGAGCAAGTGGAGCAGACG+AGG | 0.599392 | 4.2:+12916277 | None:intergenic |
| GAATCACCGGAATATGGCAG+GGG | 0.604375 | 4.2:-12916415 | None:intergenic |
| CGAATCACCGGAATATGGCA+GGG | 0.607477 | 4.2:-12916416 | None:intergenic |
| AAAACTTGGATTGGCTCCAG+AGG | 0.621215 | 4.2:-12912096 | MS.gene08793:CDS |
| AAACTCTTCTAACTTATGTG+GGG | 0.629765 | 4.2:-12910096 | MS.gene08793:CDS |
| TTCAGAGAAATTGGAGTGTG+AGG | 0.636378 | 4.2:+12916320 | None:intergenic |
| TGTGTTTAACAGGAAAGAGT+TGG | 0.642404 | 4.2:-12909427 | MS.gene08793:intron |
| AATTCAGAATCCCAAGAGGG+TGG | 0.646932 | 4.2:-12916015 | MS.gene08793:CDS |
| GGGAATTCAGAATCCCAAGA+GGG | 0.649229 | 4.2:-12916018 | MS.gene08793:CDS |
| AGAAGCTTTAGCTTTACTGA+CGG | 0.652551 | 4.2:+12914677 | None:intergenic |
| TTCTCTCAAGCAGAACCACA+AGG | 0.666147 | 4.2:-12911896 | MS.gene08793:intron |
| TATAGGTAACACTAGCCTCG+AGG | 0.680236 | 4.2:-12914983 | MS.gene08793:intron |
| TCCAAGTTACAGCAGCCTCG+AGG | 0.700049 | 4.2:+12914968 | None:intergenic |
| GCAGGGGTTTCGCTCCAGTG+CGG | 0.706219 | 4.2:-12916399 | MS.gene08793:CDS |
| ATTCAGGAGAGAATTCGAGT+CGG | 0.712094 | 4.2:-12912506 | MS.gene08793:intron |
| AGGGAATTCAGAATCCCAAG+AGG | 0.725266 | 4.2:-12916019 | MS.gene08793:CDS |
| GGGTTTGAGAAGATCGATGG+CGG | 0.728380 | 4.2:-12909367 | MS.gene08793:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 12909261 | 12916424 | 12909261 | ID=MS.gene08793 |
| chr4.2 | mRNA | 12909261 | 12916424 | 12909261 | ID=MS.gene08793.t1;Parent=MS.gene08793 |
| chr4.2 | exon | 12916257 | 12916424 | 12916257 | ID=MS.gene08793.t1.exon1;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12916257 | 12916424 | 12916257 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12915995 | 12916133 | 12915995 | ID=MS.gene08793.t1.exon2;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12915995 | 12916133 | 12915995 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12915601 | 12915696 | 12915601 | ID=MS.gene08793.t1.exon3;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12915601 | 12915696 | 12915601 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12914924 | 12915000 | 12914924 | ID=MS.gene08793.t1.exon4;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12914924 | 12915000 | 12914924 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12914627 | 12914706 | 12914627 | ID=MS.gene08793.t1.exon5;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12914627 | 12914706 | 12914627 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12913971 | 12914031 | 12913971 | ID=MS.gene08793.t1.exon6;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12913971 | 12914031 | 12913971 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12912455 | 12912522 | 12912455 | ID=MS.gene08793.t1.exon7;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12912455 | 12912522 | 12912455 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12912291 | 12912372 | 12912291 | ID=MS.gene08793.t1.exon8;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12912291 | 12912372 | 12912291 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12912052 | 12912132 | 12912052 | ID=MS.gene08793.t1.exon9;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12912052 | 12912132 | 12912052 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12911897 | 12911974 | 12911897 | ID=MS.gene08793.t1.exon10;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12911897 | 12911974 | 12911897 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12910030 | 12910149 | 12910030 | ID=MS.gene08793.t1.exon11;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12910030 | 12910149 | 12910030 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| chr4.2 | exon | 12909261 | 12909437 | 12909261 | ID=MS.gene08793.t1.exon12;Parent=MS.gene08793.t1 |
| chr4.2 | CDS | 12909261 | 12909437 | 12909261 | ID=cds.MS.gene08793.t1;Parent=MS.gene08793.t1 |
| Gene Sequence |
| Protein sequence |
