Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08922.t1 | RHN42391.1 | 97.1 | 139 | 4 | 0 | 2 | 140 | 49 | 187 | 6.80E-68 | 266.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08922.t1 | Q56XJ7 | 33.0 | 103 | 68 | 1 | 11 | 113 | 117 | 218 | 2.6e-07 | 56.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08922.t1 | A0A396GQD5 | 97.1 | 139 | 4 | 0 | 2 | 140 | 49 | 187 | 4.9e-68 | 266.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene08922 | 0.829343 | 5.43E-55 | -1.69E-46 |
| MS.gene049166 | MS.gene08922 | 0.813152 | 2.96E-51 | -1.69E-46 |
| MS.gene04918 | MS.gene08922 | 0.833066 | 6.60E-56 | -1.69E-46 |
| MS.gene04920 | MS.gene08922 | 0.817209 | 3.71E-52 | -1.69E-46 |
| MS.gene049283 | MS.gene08922 | 0.831997 | 1.22E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene08922 | 0.833699 | 4.59E-56 | -1.69E-46 |
| MS.gene049411 | MS.gene08922 | 0.829321 | 5.50E-55 | -1.69E-46 |
| MS.gene049680 | MS.gene08922 | 0.803386 | 3.57E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene08922 | 0.855076 | 8.04E-62 | -1.69E-46 |
| MS.gene050085 | MS.gene08922 | 0.835227 | 1.90E-56 | -1.69E-46 |
| MS.gene050317 | MS.gene08922 | 0.809437 | 1.89E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene08922 | 0.810317 | 1.22E-50 | -1.69E-46 |
| MS.gene050384 | MS.gene08922 | 0.808704 | 2.72E-50 | -1.69E-46 |
| MS.gene050386 | MS.gene08922 | 0.817082 | 3.96E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene08922 | 0.819306 | 1.24E-52 | -1.69E-46 |
| MS.gene050646 | MS.gene08922 | 0.829328 | 5.47E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene08922 | 0.872482 | 3.07E-67 | -1.69E-46 |
| MS.gene050689 | MS.gene08922 | 0.849125 | 3.95E-60 | -1.69E-46 |
| MS.gene050752 | MS.gene08922 | 0.833372 | 5.54E-56 | -1.69E-46 |
| MS.gene050838 | MS.gene08922 | 0.859462 | 4.07E-63 | -1.69E-46 |
| MS.gene050931 | MS.gene08922 | 0.819899 | 9.11E-53 | -1.69E-46 |
| MS.gene050941 | MS.gene08922 | 0.85067 | 1.46E-60 | -1.69E-46 |
| MS.gene050945 | MS.gene08922 | 0.810394 | 1.18E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene08922 | 0.816489 | 5.39E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene08922 | 0.920628 | 1.01E-87 | -1.69E-46 |
| MS.gene051043 | MS.gene08922 | 0.807103 | 5.95E-50 | -1.69E-46 |
| MS.gene051233 | MS.gene08922 | 0.810156 | 1.33E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene08922 | 0.887245 | 1.69E-72 | -1.69E-46 |
| MS.gene051328 | MS.gene08922 | 0.801205 | 1.00E-48 | -1.69E-46 |
| MS.gene051343 | MS.gene08922 | 0.85415 | 1.49E-61 | -1.69E-46 |
| MS.gene051363 | MS.gene08922 | 0.806079 | 9.79E-50 | -1.69E-46 |
| MS.gene051365 | MS.gene08922 | 0.812282 | 4.58E-51 | -1.69E-46 |
| MS.gene051381 | MS.gene08922 | 0.836996 | 6.74E-57 | -1.69E-46 |
| MS.gene051852 | MS.gene08922 | 0.821999 | 2.99E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene08922 | 0.846425 | 2.19E-59 | -1.69E-46 |
| MS.gene051975 | MS.gene08922 | 0.86068 | 1.75E-63 | -1.69E-46 |
| MS.gene052052 | MS.gene08922 | 0.800399 | 1.47E-48 | -1.69E-46 |
| MS.gene052072 | MS.gene08922 | 0.844971 | 5.43E-59 | -1.69E-46 |
| MS.gene052307 | MS.gene08922 | 0.846832 | 1.70E-59 | -1.69E-46 |
| MS.gene052335 | MS.gene08922 | 0.825979 | 3.49E-54 | -1.69E-46 |
| MS.gene052342 | MS.gene08922 | 0.871433 | 6.86E-67 | -1.69E-46 |
| MS.gene052434 | MS.gene08922 | 0.854758 | 9.94E-62 | -1.69E-46 |
| MS.gene052463 | MS.gene08922 | 0.82959 | 4.73E-55 | -1.69E-46 |
| MS.gene052516 | MS.gene08922 | 0.805342 | 1.40E-49 | -1.69E-46 |
| MS.gene052518 | MS.gene08922 | 0.827977 | 1.16E-54 | -1.69E-46 |
| MS.gene052533 | MS.gene08922 | 0.81041 | 1.17E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene08922 | 0.813788 | 2.14E-51 | -1.69E-46 |
| MS.gene052932 | MS.gene08922 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene08922 | 0.887504 | 1.35E-72 | -1.69E-46 |
| MS.gene053079 | MS.gene08922 | 0.80669 | 7.28E-50 | -1.69E-46 |
| MS.gene053143 | MS.gene08922 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene08922 | 0.801716 | 7.90E-49 | -1.69E-46 |
| MS.gene053456 | MS.gene08922 | 0.811696 | 6.15E-51 | -1.69E-46 |
| MS.gene053726 | MS.gene08922 | 0.803787 | 2.95E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene08922 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene054004 | MS.gene08922 | 0.868396 | 6.73E-66 | -1.69E-46 |
| MS.gene054005 | MS.gene08922 | 0.825254 | 5.18E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene08922 | 0.833319 | 5.71E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene08922 | 0.8125 | 4.11E-51 | -1.69E-46 |
| MS.gene05517 | MS.gene08922 | 0.825059 | 5.76E-54 | -1.69E-46 |
| MS.gene055311 | MS.gene08922 | 0.835905 | 1.28E-56 | -1.69E-46 |
| MS.gene055313 | MS.gene08922 | 0.82604 | 3.37E-54 | -1.69E-46 |
| MS.gene055314 | MS.gene08922 | 0.811585 | 6.51E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene08922 | 0.874727 | 5.39E-68 | -1.69E-46 |
| MS.gene055864 | MS.gene08922 | 0.841189 | 5.53E-58 | -1.69E-46 |
| MS.gene055979 | MS.gene08922 | 0.803659 | 3.14E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene08922 | 0.820118 | 8.12E-53 | -1.69E-46 |
| MS.gene056071 | MS.gene08922 | 0.802935 | 4.43E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene08922 | 0.837371 | 5.41E-57 | -1.69E-46 |
| MS.gene056181 | MS.gene08922 | 0.875076 | 4.10E-68 | -1.69E-46 |
| MS.gene056390 | MS.gene08922 | 0.815224 | 1.03E-51 | -1.69E-46 |
| MS.gene056509 | MS.gene08922 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene08922 | 0.806329 | 8.67E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene08922 | 0.839415 | 1.61E-57 | -1.69E-46 |
| MS.gene056786 | MS.gene08922 | 0.807797 | 4.24E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene08922 | 0.853087 | 3.01E-61 | -1.69E-46 |
| MS.gene056831 | MS.gene08922 | 0.807624 | 4.61E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene08922 | 0.84526 | 4.54E-59 | -1.69E-46 |
| MS.gene056992 | MS.gene08922 | 0.805428 | 1.34E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene08922 | 0.826059 | 3.34E-54 | -1.69E-46 |
| MS.gene057102 | MS.gene08922 | 0.853871 | 1.79E-61 | -1.69E-46 |
| MS.gene05781 | MS.gene08922 | 0.840464 | 8.56E-58 | -1.69E-46 |
| MS.gene057890 | MS.gene08922 | -0.817504 | 3.19E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene08922 | 0.813868 | 2.06E-51 | -1.69E-46 |
| MS.gene058054 | MS.gene08922 | 0.800587 | 1.34E-48 | -1.69E-46 |
| MS.gene058095 | MS.gene08922 | 0.819172 | 1.33E-52 | -1.69E-46 |
| MS.gene058126 | MS.gene08922 | 0.800287 | 1.55E-48 | -1.69E-46 |
| MS.gene058149 | MS.gene08922 | 0.814944 | 1.19E-51 | -1.69E-46 |
| MS.gene058159 | MS.gene08922 | 0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene058261 | MS.gene08922 | 0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene08922 | 0.81117 | 8.01E-51 | -1.69E-46 |
| MS.gene058646 | MS.gene08922 | 0.80458 | 2.02E-49 | -1.69E-46 |
| MS.gene058708 | MS.gene08922 | -0.800575 | 1.35E-48 | -1.69E-46 |
| MS.gene058758 | MS.gene08922 | 0.802748 | 4.84E-49 | -1.69E-46 |
| MS.gene058976 | MS.gene08922 | 0.813674 | 2.27E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene08922 | 0.805833 | 1.10E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene08922 | 0.900377 | 7.78E-78 | -1.69E-46 |
| MS.gene059170 | MS.gene08922 | 0.829802 | 4.20E-55 | -1.69E-46 |
| MS.gene059283 | MS.gene08922 | 0.807113 | 5.92E-50 | -1.69E-46 |
| MS.gene059290 | MS.gene08922 | 0.803472 | 3.43E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene08922 | 0.808267 | 3.37E-50 | -1.69E-46 |
| MS.gene059778 | MS.gene08922 | 0.81034 | 1.21E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene08922 | -0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene059901 | MS.gene08922 | -0.836856 | 7.32E-57 | -1.69E-46 |
| MS.gene059965 | MS.gene08922 | 0.812574 | 3.96E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene08922 | 0.853641 | 2.09E-61 | -1.69E-46 |
| MS.gene06011 | MS.gene08922 | 0.871936 | 4.67E-67 | -1.69E-46 |
| MS.gene060296 | MS.gene08922 | 0.805377 | 1.37E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene08922 | 0.804059 | 2.59E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene08922 | 0.852068 | 5.88E-61 | -1.69E-46 |
| MS.gene060870 | MS.gene08922 | 0.808174 | 3.52E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene08922 | 0.836151 | 1.11E-56 | -1.69E-46 |
| MS.gene060933 | MS.gene08922 | 0.82463 | 7.27E-54 | -1.69E-46 |
| MS.gene060935 | MS.gene08922 | 0.842062 | 3.25E-58 | -1.69E-46 |
| MS.gene060937 | MS.gene08922 | 0.850402 | 1.74E-60 | -1.69E-46 |
| MS.gene061006 | MS.gene08922 | 0.810112 | 1.36E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene08922 | 0.867909 | 9.66E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08922.t1 | MTR_1g031680 | 67.883 | 137 | 38 | 5 | 1 | 132 | 1 | 136 | 2.55e-56 | 172 |
| MS.gene08922.t1 | MTR_3g065950 | 45.926 | 135 | 68 | 3 | 1 | 133 | 4 | 135 | 7.59e-36 | 120 |
| MS.gene08922.t1 | MTR_3g065960 | 46.154 | 130 | 67 | 2 | 4 | 133 | 9 | 135 | 3.50e-33 | 114 |
| MS.gene08922.t1 | MTR_5g078750 | 50.413 | 121 | 54 | 4 | 17 | 135 | 41 | 157 | 2.28e-31 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08922.t1 | AT1G70780 | 59.286 | 140 | 43 | 5 | 1 | 133 | 2 | 134 | 1.13e-46 | 148 |
| MS.gene08922.t1 | AT1G23150 | 57.664 | 137 | 50 | 5 | 1 | 132 | 1 | 134 | 4.43e-39 | 129 |
| MS.gene08922.t1 | AT5G37730 | 50.588 | 85 | 41 | 1 | 16 | 100 | 16 | 99 | 5.39e-25 | 94.4 |
Find 37 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGATCAACATCAATGTTT+TGG | 0.229459 | 4.4:+17380407 | MS.gene08922:CDS |
| CGCTGGACCGATTCGATTTG+TGG | 0.324818 | 4.4:+17380434 | MS.gene08922:CDS |
| GCCATTCCGTTGGTTGTCTC+TGG | 0.349243 | 4.4:-17381167 | None:intergenic |
| GGAATGGGAGCTTGAAGAAT+TGG | 0.358621 | 4.4:+17381225 | MS.gene08922:CDS |
| CATTGGCTCGCCGCAGGAAT+GGG | 0.380492 | 4.4:+17381210 | MS.gene08922:CDS |
| GAGGGAAGACTTCCTATCTT+AGG | 0.398437 | 4.4:+17380516 | MS.gene08922:CDS |
| TTCTCGCATCCTTAGCGCTC+TGG | 0.400064 | 4.4:-17380380 | None:intergenic |
| GCATTGGCTCGCCGCAGGAA+TGG | 0.419805 | 4.4:+17381209 | MS.gene08922:CDS |
| ATCCGCATTGGCCATTCCGT+TGG | 0.457689 | 4.4:-17381177 | None:intergenic |
| GTAACATCCTTTCCTAAGAT+AGG | 0.464705 | 4.4:-17380528 | None:intergenic |
| CGGTCGCATTGGCTCGCCGC+AGG | 0.490804 | 4.4:+17381204 | MS.gene08922:CDS |
| CTGAGTCCACTGGACACCAT+TGG | 0.504639 | 4.4:+17381104 | MS.gene08922:CDS |
| AGCTCCTCCGTGTGATCCAA+TGG | 0.509536 | 4.4:-17381120 | None:intergenic |
| TGCGGATGGAGCGGTCGCAT+TGG | 0.509786 | 4.4:+17381193 | MS.gene08922:CDS |
| TGTCAACACGTTGGATCTGA+TGG | 0.540465 | 4.4:+17380567 | MS.gene08922:CDS |
| TGCGACCGCTCCATCCGCAT+TGG | 0.541505 | 4.4:-17381189 | None:intergenic |
| AACGGAATGGCCAATGCGGA+TGG | 0.542673 | 4.4:+17381179 | MS.gene08922:CDS |
| AAGTCTTCCCTCACGAGCAT+AGG | 0.565718 | 4.4:-17380505 | None:intergenic |
| CGAGGGAGACCTTGTTGCCA+CGG | 0.566086 | 4.4:+17380461 | MS.gene08922:CDS |
| TCGCTAACCACAAATCGAAT+CGG | 0.569838 | 4.4:-17380441 | None:intergenic |
| GCCAGAGACAACCAACGGAA+TGG | 0.577142 | 4.4:+17381166 | MS.gene08922:CDS |
| CTGGACACCATTGGATCACA+CGG | 0.585651 | 4.4:+17381113 | MS.gene08922:CDS |
| AAGACTTCCTATCTTAGGAA+AGG | 0.603187 | 4.4:+17380521 | MS.gene08922:CDS |
| CTCAAATCCTATGCTCGTGA+GGG | 0.605690 | 4.4:+17380498 | MS.gene08922:CDS |
| TCTCAAATCCTATGCTCGTG+AGG | 0.606550 | 4.4:+17380497 | MS.gene08922:CDS |
| GCTCTTTACTGTCAACACGT+TGG | 0.610089 | 4.4:+17380558 | MS.gene08922:CDS |
| GAAGAAGAACCAGAGCGCTA+AGG | 0.610725 | 4.4:+17380371 | MS.gene08922:CDS |
| ATTCGATTTGTGGTTAGCGA+GGG | 0.615327 | 4.4:+17380444 | MS.gene08922:CDS |
| GATTCGATTTGTGGTTAGCG+AGG | 0.620699 | 4.4:+17380443 | MS.gene08922:CDS |
| TATCAATAACCGTGGCAACA+AGG | 0.624010 | 4.4:-17380470 | None:intergenic |
| AATGGCCAATGCGGATGGAG+CGG | 0.628022 | 4.4:+17381184 | MS.gene08922:CDS |
| AACCAACGGAATGGCCAATG+CGG | 0.659288 | 4.4:+17381175 | MS.gene08922:CDS |
| TGTGATCCAATGGTGTCCAG+TGG | 0.669646 | 4.4:-17381110 | None:intergenic |
| TCTTCAAGCTCCCATTCCTG+CGG | 0.695043 | 4.4:-17381220 | None:intergenic |
| GAGAGCAGTATCAATAACCG+TGG | 0.708477 | 4.4:-17380478 | None:intergenic |
| AAGAAGCCAGAGACAACCAA+CGG | 0.709491 | 4.4:+17381161 | MS.gene08922:CDS |
| GACACCATTGGATCACACGG+AGG | 0.754267 | 4.4:+17381116 | MS.gene08922:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCTATTTATGTTTATG+AGG | + | chr4.4:17380950-17380969 | MS.gene08922:intron | 15.0% |
| !! | TTACATTATGATGTTAAATT+GGG | + | chr4.4:17381012-17381031 | MS.gene08922:intron | 15.0% |
| !! | AAAAATACGTTTGAATTCAA+TGG | - | chr4.4:17380905-17380924 | None:intergenic | 20.0% |
| !! | ATAATATTGTAACCTCAATT+AGG | + | chr4.4:17380704-17380723 | MS.gene08922:intron | 20.0% |
| !! | CTTACATTATGATGTTAAAT+TGG | + | chr4.4:17381011-17381030 | MS.gene08922:intron | 20.0% |
| !! | TAATCAAAACTTTGCATAAA+AGG | - | chr4.4:17381056-17381075 | None:intergenic | 20.0% |
| !!! | CAATTTTCATTTTGTTGAAT+TGG | + | chr4.4:17380625-17380644 | MS.gene08922:intron | 20.0% |
| !!! | TTCAAACGTATTTTTAGTAA+TGG | + | chr4.4:17380910-17380929 | MS.gene08922:intron | 20.0% |
| ! | ATTATGATGTTAAATTGGGT+TGG | + | chr4.4:17381016-17381035 | MS.gene08922:intron | 25.0% |
| ! | ATTCAATAACGAAAACATCA+TGG | - | chr4.4:17380772-17380791 | None:intergenic | 25.0% |
| ! | TTATGAGGAATTTCATGTTT+CGG | + | chr4.4:17380965-17380984 | MS.gene08922:intron | 25.0% |
| ! | TTCAATAACGAAAACATCAT+GGG | - | chr4.4:17380771-17380790 | None:intergenic | 25.0% |
| !! | GATGTTTTCGTTATTGAATT+GGG | + | chr4.4:17380773-17380792 | MS.gene08922:intron | 25.0% |
| !! | GTTCTTTTCATTGTTGAATT+TGG | + | chr4.4:17380653-17380672 | MS.gene08922:intron | 25.0% |
| !! | TGATGTTTTCGTTATTGAAT+TGG | + | chr4.4:17380772-17380791 | MS.gene08922:intron | 25.0% |
| !! | TTGATCAACATCAATGTTTT+GGG | + | chr4.4:17380408-17380427 | MS.gene08922:CDS | 25.0% |
| !!! | GATTAGTGTCTTTTATTTTG+TGG | + | chr4.4:17381071-17381090 | MS.gene08922:intron | 25.0% |
| AACAAAACCAAACCTAATTG+AGG | - | chr4.4:17380719-17380738 | None:intergenic | 30.0% | |
| ATTGTAACCTCAATTAGGTT+TGG | + | chr4.4:17380709-17380728 | MS.gene08922:intron | 30.0% | |
| GAATTGGGTAGGAAAAAATT+TGG | + | chr4.4:17380788-17380807 | MS.gene08922:intron | 30.0% | |
| TATGAGGAATTTCATGTTTC+GGG | + | chr4.4:17380966-17380985 | MS.gene08922:intron | 30.0% | |
| ! | GTTGATCAACATCAATGTTT+TGG | + | chr4.4:17380407-17380426 | MS.gene08922:CDS | 30.0% |
| ! | TTTATAACCACACTTGCTTT+TGG | + | chr4.4:17380839-17380858 | MS.gene08922:intron | 30.0% |
| ! | TTTTCGTTATTGAATTGGGT+AGG | + | chr4.4:17380777-17380796 | MS.gene08922:intron | 30.0% |
| AACAAAACCAAAAGCAAGTG+TGG | - | chr4.4:17380849-17380868 | None:intergenic | 35.0% | |
| AAGACTTCCTATCTTAGGAA+AGG | + | chr4.4:17380521-17380540 | MS.gene08922:CDS | 35.0% | |
| ATGAGGAATTTCATGTTTCG+GGG | + | chr4.4:17380967-17380986 | MS.gene08922:intron | 35.0% | |
| GTAACATCCTTTCCTAAGAT+AGG | - | chr4.4:17380531-17380550 | None:intergenic | 35.0% | |
| !!! | GCTTTTGGTTTTGTTTGTCA+TGG | + | chr4.4:17380854-17380873 | MS.gene08922:intron | 35.0% |
| TATCAATAACCGTGGCAACA+AGG | - | chr4.4:17380473-17380492 | None:intergenic | 40.0% | |
| TCGCTAACCACAAATCGAAT+CGG | - | chr4.4:17380444-17380463 | None:intergenic | 40.0% | |
| ! | ATTCGATTTGTGGTTAGCGA+GGG | + | chr4.4:17380444-17380463 | MS.gene08922:CDS | 40.0% |
| AAGAAGCCAGAGACAACCAA+CGG | + | chr4.4:17381161-17381180 | MS.gene08922:CDS | 45.0% | |
| CTCAAATCCTATGCTCGTGA+GGG | + | chr4.4:17380498-17380517 | MS.gene08922:CDS | 45.0% | |
| GAGAGCAGTATCAATAACCG+TGG | - | chr4.4:17380481-17380500 | None:intergenic | 45.0% | |
| GAGGGAAGACTTCCTATCTT+AGG | + | chr4.4:17380516-17380535 | MS.gene08922:CDS | 45.0% | |
| GCTCTTTACTGTCAACACGT+TGG | + | chr4.4:17380558-17380577 | MS.gene08922:CDS | 45.0% | |
| GGAATGGGAGCTTGAAGAAT+TGG | + | chr4.4:17381225-17381244 | MS.gene08922:CDS | 45.0% | |
| TCTCAAATCCTATGCTCGTG+AGG | + | chr4.4:17380497-17380516 | MS.gene08922:CDS | 45.0% | |
| TGTCAACACGTTGGATCTGA+TGG | + | chr4.4:17380567-17380586 | MS.gene08922:CDS | 45.0% | |
| ! | GATTCGATTTGTGGTTAGCG+AGG | + | chr4.4:17380443-17380462 | MS.gene08922:CDS | 45.0% |
| !!! | ATCAATGTTTTGGGAAGCGC+TGG | + | chr4.4:17380417-17380436 | MS.gene08922:CDS | 45.0% |
| AACCAACGGAATGGCCAATG+CGG | + | chr4.4:17381175-17381194 | MS.gene08922:CDS | 50.0% | |
| AAGTCTTCCCTCACGAGCAT+AGG | - | chr4.4:17380508-17380527 | None:intergenic | 50.0% | |
| CTGGACACCATTGGATCACA+CGG | + | chr4.4:17381113-17381132 | MS.gene08922:CDS | 50.0% | |
| TCTTCAAGCTCCCATTCCTG+CGG | - | chr4.4:17381223-17381242 | None:intergenic | 50.0% | |
| TGTGATCCAATGGTGTCCAG+TGG | - | chr4.4:17381113-17381132 | None:intergenic | 50.0% | |
| ! | GAAGAAGAACCAGAGCGCTA+AGG | + | chr4.4:17380371-17380390 | MS.gene08922:CDS | 50.0% |
| !!! | TTTTGCAGCTCTGAGTCCAC+TGG | + | chr4.4:17381094-17381113 | MS.gene08922:intron | 50.0% |
| AACGGAATGGCCAATGCGGA+TGG | + | chr4.4:17381179-17381198 | MS.gene08922:CDS | 55.0% | |
| AATGGCCAATGCGGATGGAG+CGG | + | chr4.4:17381184-17381203 | MS.gene08922:CDS | 55.0% | |
| AGCTCCTCCGTGTGATCCAA+TGG | - | chr4.4:17381123-17381142 | None:intergenic | 55.0% | |
| CTGAGTCCACTGGACACCAT+TGG | + | chr4.4:17381104-17381123 | MS.gene08922:CDS | 55.0% | |
| GACACCATTGGATCACACGG+AGG | + | chr4.4:17381116-17381135 | MS.gene08922:CDS | 55.0% | |
| GCCAGAGACAACCAACGGAA+TGG | + | chr4.4:17381166-17381185 | MS.gene08922:CDS | 55.0% | |
| TTCTCGCATCCTTAGCGCTC+TGG | - | chr4.4:17380383-17380402 | None:intergenic | 55.0% | |
| ! | ATCCGCATTGGCCATTCCGT+TGG | - | chr4.4:17381180-17381199 | None:intergenic | 55.0% |
| ! | GCCATTCCGTTGGTTGTCTC+TGG | - | chr4.4:17381170-17381189 | None:intergenic | 55.0% |
| !! | CGCTGGACCGATTCGATTTG+TGG | + | chr4.4:17380434-17380453 | MS.gene08922:CDS | 55.0% |
| CGAGGGAGACCTTGTTGCCA+CGG | + | chr4.4:17380461-17380480 | MS.gene08922:CDS | 60.0% | |
| !! | CATTGGCTCGCCGCAGGAAT+GGG | + | chr4.4:17381210-17381229 | MS.gene08922:CDS | 60.0% |
| TGCGACCGCTCCATCCGCAT+TGG | - | chr4.4:17381192-17381211 | None:intergenic | 65.0% | |
| TGCGGATGGAGCGGTCGCAT+TGG | + | chr4.4:17381193-17381212 | MS.gene08922:CDS | 65.0% | |
| !! | GCATTGGCTCGCCGCAGGAA+TGG | + | chr4.4:17381209-17381228 | MS.gene08922:CDS | 65.0% |
| !! | CGGTCGCATTGGCTCGCCGC+AGG | + | chr4.4:17381204-17381223 | MS.gene08922:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 17380354 | 17381289 | 17380354 | ID=MS.gene08922 |
| chr4.4 | mRNA | 17380354 | 17381289 | 17380354 | ID=MS.gene08922.t1;Parent=MS.gene08922 |
| chr4.4 | exon | 17380354 | 17380588 | 17380354 | ID=MS.gene08922.t1.exon1;Parent=MS.gene08922.t1 |
| chr4.4 | CDS | 17380354 | 17380588 | 17380354 | ID=cds.MS.gene08922.t1;Parent=MS.gene08922.t1 |
| chr4.4 | exon | 17381102 | 17381289 | 17381102 | ID=MS.gene08922.t1.exon2;Parent=MS.gene08922.t1 |
| chr4.4 | CDS | 17381102 | 17381289 | 17381102 | ID=cds.MS.gene08922.t1;Parent=MS.gene08922.t1 |
| Gene Sequence |
| Protein sequence |
