AlfalfaGEDB | MS.gene68120

M. sativa cultivar XinJiangDaYe / MS.gene68120

KEGG: -
GO: -
PFAM: PF05368.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68120.t1	XP_003604095.2	93	401	12	3	1	393	1	393	7.90E-207	729.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68120.t1	O65502	93.9	328	20	0	66	393	68	395	1.1e-180	634.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68120.t1	G7J9A2	93.0	401	12	3	1	393	1	393	5.7e-207	729.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene68120	0.823499	1.34E-53	-1.69E-46
MS.gene049171	MS.gene68120	0.92032	1.49E-87	-1.69E-46
MS.gene049173	MS.gene68120	0.875706	2.49E-68	-1.69E-46
MS.gene049217	MS.gene68120	0.893639	5.21E-75	-1.69E-46
MS.gene049222	MS.gene68120	0.914358	2.10E-84	-1.69E-46
MS.gene049232	MS.gene68120	0.854287	1.36E-61	-1.69E-46
MS.gene049285	MS.gene68120	0.945027	6.57E-104	-1.69E-46
MS.gene049320	MS.gene68120	0.921167	5.06E-88	-1.69E-46
MS.gene049369	MS.gene68120	0.811249	7.69E-51	-1.69E-46
MS.gene04939	MS.gene68120	0.830818	2.37E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68120.t1	MTR_3g118430	94.763	401	5	3	1	393	1	393	0.0	764

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68120.t1	AT4G35250	93.353	331	22	0	63	393	65	395	0.0	651

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Find 105 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATCTGATTGTTTCGAC+TGG	0.443973	3.4:+100258897	None:intergenic
AAATGATGTTGCTGACAGAT+TGG	0.529217	3.4:-100259575	MS.gene68120:CDS
AACAGCCACACCTGGTAGGG+TGG	0.616669	3.4:-100260690	MS.gene68120:CDS
AACTCAACAAAATGAGTACT+AGG	0.522968	3.4:+100260632	None:intergenic
AAGTCAGCTGGAGCAGGCCT+CGG	0.491663	3.4:+100260392	None:intergenic
AATACTTGATCTCCATGAGT+GGG	0.653716	3.4:+100260135	None:intergenic
AATATCTGATTGTTTCGACT+GGG	0.571429	3.4:+100258898	None:intergenic
AATCGCTTACATGGATACTC+AGG	0.576431	3.4:-100259895	MS.gene68120:intron
AATGTAGCAGGAATAGTCTC+AGG	0.539300	3.4:+100260323	None:intergenic
ACACAATGTAATCACCTCTT+GGG	0.536741	3.4:+100259690	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATCTGATTGTTTCGAC+TGG	+	chr3.4:100260714-100260733	None:intergenic	30.0%
AACTCAACAAAATGAGTACT+AGG	+	chr3.4:100258979-100258998	None:intergenic	30.0%
AATATCTGATTGTTTCGACT+GGG	+	chr3.4:100260713-100260732	None:intergenic	30.0%
ACAATTCATAATTCCAATGC+AGG	-	chr3.4:100259620-100259639	MS.gene68120:CDS	30.0%
ACAGGTTTATTCCATTCTAT+TGG	-	chr3.4:100260396-100260415	MS.gene68120:CDS	30.0%
ATGCCTATAGTTGATTATAC+GGG	-	chr3.4:100260530-100260549	MS.gene68120:CDS	30.0%
ATTATACGGGAAATATTTGC+AGG	-	chr3.4:100260543-100260562	MS.gene68120:CDS	30.0%
ATTCAATGTGCTAAAGCAAT+GGG	-	chr3.4:100259396-100259415	MS.gene68120:intron	30.0%
CAATTCATAATTCCAATGCA+GGG	-	chr3.4:100259621-100259640	MS.gene68120:CDS	30.0%
CATGCCTATAGTTGATTATA+CGG	-	chr3.4:100260529-100260548	MS.gene68120:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	100258889	100260741	100258889	ID=MS.gene68120
chr3.4	mRNA	100258889	100260741	100258889	ID=MS.gene68120.t1;Parent=MS.gene68120
chr3.4	exon	100260067	100260741	100260067	ID=MS.gene68120.t1.exon1;Parent=MS.gene68120.t1
chr3.4	CDS	100260067	100260741	100260067	ID=cds.MS.gene68120.t1;Parent=MS.gene68120.t1
chr3.4	exon	100259896	100259988	100259896	ID=MS.gene68120.t1.exon2;Parent=MS.gene68120.t1
chr3.4	CDS	100259896	100259988	100259896	ID=cds.MS.gene68120.t1;Parent=MS.gene68120.t1
chr3.4	exon	100259564	100259800	100259564	ID=MS.gene68120.t1.exon3;Parent=MS.gene68120.t1
chr3.4	CDS	100259564	100259800	100259564	ID=cds.MS.gene68120.t1;Parent=MS.gene68120.t1
chr3.4	exon	100258889	100259065	100258889	ID=MS.gene68120.t1.exon4;Parent=MS.gene68120.t1
chr3.4	CDS	100258889	100259065	100258889	ID=cds.MS.gene68120.t1;Parent=MS.gene68120.t1

Gene Sequence

>MS.gene68120

ATGAAAATGGCGACCCTGATGAGGTTACCAACAGCCACACCTGGTAGGGTGGTGAGGAGGACGAGAGAGGCATTTCCTGTTCTTTATCCTAGTACTCATTTTGTTGAGTTTTGCAAAGGTGGAAGAAGGATTATTAGAGTGGGAGTGAAATGCAATATCAACAGCAATAGCAATAGCAATAGCAATTCAGAGAGGGCGGTGAATCTTGGACCAGGGACACCTGTTAGGCCAACAAGTATACTTGTGGTTGGAGCCACGGGGACTTTGGGAAGGCAGATTGTTCGGAGGGCACTGGACGAAGGATACGACGTCCGGTGTCTGGTAAGGCCGAGGCCTGCTCCAGCTGACTTCCTTCGTGATTGGGGAGCAACTGTTGTGAATGCTGATCTTAGTAAACCTGAGACTATTCCTGCTACATTAGTTGGAGTTCATACTGTTATTGACTGCGCCACTGGCCGTCCTGAAGAGCCTATCAAAACAGTTGATTGGGAAGGTAAAGTTGCTCTTATTCAATGTGCTAAAGCAATGGGTATTCAGAAATATGTTTTCTATTCCATCCATAACTGCGACAAACATCCTGAGGTCCCACTCATGGAGATCAAGTATTGCACTGAGAACTTCCTCCGTGATTCTGGACTCAATCACATTGTCATCCGTTTATGTGGTTTCATGCAAGTAAGTCATTGTCAATATATAATAATCAATTCATTTATTATTATTATTATTACTCAACAATTCATAATTCCAATGCAGGGTCTTATTGGCCAATATGCTGTTCCTATCCTCGAAGAAAAATCTGTTTGGGGAACTGACGCCCCCACCAGAATCGCTTACATGGATACTCAGGTTACTTAATTACTTACTTAGTTATATTATATCTATATATATGTTCATTCCTTAATCAATCACTTCATTCATATGTCTGCCTCTGCTGCTTTTAGGATATAGCTCGCTTGACTTTTATAGCCTTACGAAATGAAAAAATCAATGGTAAACTTCTTACATTTGCTGGTCCTCGTGCGTGGACTACCCAAGAGGTGATTACATTGTGTGAGAGGCTTGCGGGCCAAGATGCTAATGTAACTACAGTTCCTGTCTCCGTTTTAAGACTCACTCGTCAGTTAACCCGCTTTTTTGAGTGGACAAATGATGTTGCTGACAGATTGGCATTTTCAGAGGTACTTATTCATTTCATTTCTTTCCTAATCTCCACCTGTTTAATGCTTTATCAATCAACTCATTAATACTTGTTGCATTGGACATTGCTCCCAAATCCTTCTTCTTCTTTTTTTGTATGCTATTGCTATACATCAACTATTTTTTGTTACATTGCTTGAATGGTGTGTTTTAACCCAAATCAGCTGCTCTAGTAGTCTCAGTTGTGTCTCTGCATTACTACATTTCCATTGGGGACCTATTGCCATTGGCTTTTACCCAAATCCACTCATGTCGATGGACATCAAACACAGTTATAGAATAAAATCTTAACCAAACAAACCCTATTCTTACAGGTTTATTCCATTCTATTGGTCCGACCAACACTATTATTTGATACATCTTATATCATCATTCTTACTCTAGTTACCAAACAGATTCCTAGTGCATATAATATTTTCTCTTTCATTTTAATGGTGGTAAAACATGCCTATAGTTGATTATACGGGAAATATTTGCAGGTGCTTACAAGTGACACAGTTTTCTCTGTTCCAATGGCGGAGACATACAACCTACTTGGTGTCGATACCAAAGATATAATTACATTAGAGAAGTATTTGCAGGACTACTTCACGAACATATTGAAGAAGTTGAAGGATCTCAAAGCCCAGTCGAAACAATCAGATATTTTCTTCTGA

Protein sequence

>MS.gene68120.t1

MKMATLMRLPTATPGRVVRRTREAFPVLYPSTHFVEFCKGGRRIIRVGVKCNINSNSNSNSNSERAVNLGPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPATLVGVHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKYCTENFLRDSGLNHIVIRLCGFMQGLIGQYAVPILEEKSVWGTDAPTRIAYMDTQDIARLTFIALRNEKINGKLLTFAGPRAWTTQEVITLCERLAGQDANVTTVPVSVLRLTRQLTRFFEWTNDVADRLAFSEVLTSDTVFSVPMAETYNLLGVDTKDIITLEKYLQDYFTNILKKLKDLKAQSKQSDIFF