AlfalfaGEDB | MS.gene42636

M. sativa cultivar XinJiangDaYe / MS.gene42636

KEGG: K02221
GO: GO:0005575 GO:0016020 GO:0110165
PFAM: PF02325.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42636.t1	XP_003603213.1	95.5	247	5	3	1	243	1	245	1.70E-122	448.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42636.t1	Q9C595	60.1	183	61	2	48	230	64	234	2.3e-51	203.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42636.t1	G7J8F7	95.5	247	5	3	1	243	1	245	1.2e-122	448.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene42636	0.902922	5.90E-79	-1.69E-46
MS.gene049173	MS.gene42636	0.864451	1.20E-64	-1.69E-46
MS.gene049217	MS.gene42636	0.888556	5.32E-73	-1.69E-46
MS.gene049222	MS.gene42636	0.896492	3.50E-76	-1.69E-46
MS.gene049232	MS.gene42636	0.843296	1.53E-58	-1.69E-46
MS.gene049281	MS.gene42636	-0.819575	1.08E-52	-1.69E-46
MS.gene049285	MS.gene42636	0.933645	1.37E-95	-1.69E-46
MS.gene049320	MS.gene42636	0.916206	2.35E-85	-1.69E-46
MS.gene04939	MS.gene42636	0.849165	3.85E-60	-1.69E-46
MS.gene049427	MS.gene42636	0.820454	6.80E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42636.t1	MTR_3g105100	95.547	247	5	3	1	243	1	245	1.28e-167	462
MS.gene42636.t1	MTR_4g005520	47.368	76	35	3	118	189	132	206	1.27e-13	68.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42636.t1	AT5G21920	60.109	183	61	2	48	230	64	234	2.19e-69	214
MS.gene42636.t1	AT5G21920	59.813	107	42	1	48	154	64	169	4.49e-36	126
MS.gene42636.t1	AT4G27990	50.000	78	34	3	118	191	135	211	2.21e-14	70.5
MS.gene42636.t1	AT3G07430	48.718	78	35	3	118	191	149	225	4.28e-14	69.7

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Find 77 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAGGTAAGAACAAGCC+TGG	0.548754	3.4:+91998924	None:intergenic
AAATGGATGAGGCAGCTTCA+AGG	0.511637	3.4:-91997448	MS.gene42636:CDS
AACAAGCCTGGCAACGAGCA+AGG	0.565234	3.4:+91998936	None:intergenic
AAGCCAGCCACGGAATCACC+AGG	0.598530	3.4:+91999003	None:intergenic
AAGTTTGGAACAATTATCGA+CGG	0.638484	3.4:+91999256	None:intergenic
AATGGATGAGGCAGCTTCAA+GGG	0.496246	3.4:-91997447	MS.gene42636:CDS
AATGGATGGAGGGGAGAAAT+TGG	0.246722	3.4:+91999286	None:intergenic
ACAACACCTTGCTCGTTGCC+AGG	0.436913	3.4:-91998942	MS.gene42636:CDS
ACGATGGCAGGAGGAGCGTT+AGG	0.485173	3.4:+91998901	None:intergenic
ACGGCGTTGGAAATGGATGG+AGG	0.600079	3.4:+91999275	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTATAGTAGAATGGTTGG+AGG	-	chr3.4:91998007-91998026	MS.gene42636:intron	30.0%
ACATGTAAGTTCCATACTTA+AGG	-	chr3.4:91998670-91998689	MS.gene42636:intron	30.0%
CGTAGATAGTTAGATTCTAT+TGG	+	chr3.4:91998965-91998984	None:intergenic	30.0%
CTTGTCAAAAGTTTCACAAT+TGG	+	chr3.4:91998283-91998302	None:intergenic	30.0%
GCCATTTGATTGAAATCAAA+TGG	-	chr3.4:91998794-91998813	MS.gene42636:intron	30.0%
GTAGAAAATATTTGAGTAGC+TGG	-	chr3.4:91998926-91998945	MS.gene42636:CDS	30.0%
GTGACAAAAACATTAAGACA+GGG	+	chr3.4:91998248-91998267	None:intergenic	30.0%
TGTGACAAAAACATTAAGAC+AGG	+	chr3.4:91998249-91998268	None:intergenic	30.0%
TTACTTCTTCACAGAACAAA+TGG	-	chr3.4:91999359-91999378	MS.gene42636:CDS	30.0%
ACACAAGAATTACAAGGTGA+AGG	-	chr3.4:91998522-91998541	MS.gene42636:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.4	gene	91997414	91999432	91997414	ID=MS.gene42636
chr3.4	mRNA	91997414	91999432	91997414	ID=MS.gene42636.t1;Parent=MS.gene42636
chr3.4	exon	91999175	91999432	91999175	ID=MS.gene42636.t1.exon1;Parent=MS.gene42636.t1
chr3.4	CDS	91999175	91999432	91999175	ID=cds.MS.gene42636.t1;Parent=MS.gene42636.t1
chr3.4	exon	91998889	91999094	91998889	ID=MS.gene42636.t1.exon2;Parent=MS.gene42636.t1
chr3.4	CDS	91998889	91999094	91998889	ID=cds.MS.gene42636.t1;Parent=MS.gene42636.t1
chr3.4	exon	91997414	91997681	91997414	ID=MS.gene42636.t1.exon3;Parent=MS.gene42636.t1
chr3.4	CDS	91997414	91997681	91997414	ID=cds.MS.gene42636.t1;Parent=MS.gene42636.t1

Gene Sequence

>MS.gene42636

ATGGCCGTTATGAACGGTTGCGACTCGTCGTCCACCACTGATACAGAAACGAAGAAGAACGTCTCGTTTTGTTGGGGTAATTCTCAATCCCCATTAGCATTCCCCTTTCTCAAATCCCCCATCTCCAATTTCTCCCCTCCATCCATTTCCAACGCCGTCGATAATTGTTCCAAACTTCTCCACTCCTTAGCTTCTCAAAACCCCTTCTTAAACAAACTACTCTCTCTTTCCTCTCAATTCCATAACACGTGCCTACAGGTTAGTAAAAGTTGCAGCAGCAGTAATTAATTCGTAGTAATTTTCGCTTTTATTCATGATTTGTATGCTTCGTCTACCAGATTCGGTGCAGTAACTACAGGAACAGTAGTAGGTGGGTGAGTAATCATCACAATTTTGCCGCTGTTTTACCTGGTGATTCCGTGGCTGGCTTAGTGGTGGCTAATGGACTTAATAATTTTTTGAGTCTTTACAACACCTTGCTCGTTGCCAGGCTTGTTCTTACCTGGTTTCCTAACGCTCCTCCTGCCATCGTTGCTCCTCTCAGGTCAGTCACATGTTAGTCACAATGTGGCAATTACGAGATATTGATAGAAAATTATAGTAGAATGGTTGGAGGCATTTAAAATTATAAAATTTTATCTTCCATGAGTGGATAACAGTGCATTTAACTCGTATTTTTTTTTTGTTGAAATGCAAGGACGTGGGGTTATTAGTGGAATGAGTAAACCACCAGATTGGTACCTATCTTTGTAAGCTACTCCCAAATTAGTCCGTGACTTTGTTAATAATTCAAACTAGTCTCTGTTTTTGGCAAAAGTTTCTCGATTCGGTCCCTGTCTTAATGTTTTTGTCACATGATATGGGACCCAATTGTGAAACTTTTGACAAGACAAAGACTAGTTTGAAATCTTAACAAAGGCAGAGACTGATTTGAGAGAGGCTTACAAAGATAGGGACCAATTTGGTGGTTTACTCTTAGTGGAATCCATACTCAATTAGAAAAGAGTTGTGCTATTTCTTGCAAAAAAAAAAAAAAAATCATCATGAGTGTTTCACGAATTGTTTTTGGTCATTGGATCTTCCACTTTAGTGGAATACATGGGTGGTTACACAAGAATTACAAGGTGAAGGTATTAGTGAGTAAGCATCGTGAATGTTTTTATGATAGAACTTTTCCCTACAAGTAGCATTTCTCTTAGAAAAATGGGATGCTTTTGAGGTGGTTGTGTTGAAAAGGGTCAAAATGAGTGATATATACATGTAAGTTCCATACTTAAGGCCAGGGAATTGCAATGGGAGGTGTTGGATTGTAGGTTGGATGCTATTAGAGAGGGACCTAGATTCTCTACGGTTAGGGAATCCTATCGTCAATGCATTGGAGCCATTTGATTGAAATCAAATGGTCTAGATTTGAAGCTCAGCAAAGAATTTAGAACATTGTAGAACAGCAATCACAATCAGATGATTGAAATTTTCTTGCAGGCCACTATCTGATCTAGGGAATCCATTTACGTAGAAAATATTTGAGTAGCTGGATGCAATTGGTGGCCAATAGAATCTAACTATCTACGTTAAATTACCAAAATATTTGATGTATGATGCGTATGATGTAACTTCACGTTTCTTCACTTCTCGGACATTATACACTGCTTAGAACCAATGTAGCTAATTATTTAATGACACACAACATACACAGATTTAATTGGTTAAAGAATTTGAGTGTTTAATTAAGTGATTATTGTTTGATTCAGCACCGTATGTGACCCGTATTTGAATGTATTCCGTGGGCTTATCCCCCCTCTCGGTGGACTGGATCTCTCTCCCATCCTTGCATTCCTTGTTCTGAATGCCTTCACTAGCACTGCTGCTGCACTCCCTGCTGAGCTTCCAGTCACAGAACAATCTAAGCAAGGTCTTGAAGCAAGATTACAACAACCTACCGACGTTACTTCTTCACAGAACAAATGGATGAGGCAGCTTCAAGGGATCGGGTCAAAGACCTCCACTTCTGCAAATTAG

Protein sequence

>MS.gene42636.t1

MAVMNGCDSSSTTDTETKKNVSFCWGNSQSPLAFPFLKSPISNFSPPSISNAVDNCSKLLHSLASQNPFLNKLLSLSSQFHNTCLQIRCSNYRNSSRWVSNHHNFAAVLPGDSVAGLVVANGLNNFLSLYNTLLVARLVLTWFPNAPPAIVAPLSTVCDPYLNVFRGLIPPLGGLDLSPILAFLVLNAFTSTAAALPAELPVTEQSKQGLEARLQQPTDVTSSQNKWMRQLQGIGSKTSTSAN