AlfalfaGEDB | MS.gene26662

M. sativa cultivar XinJiangDaYe / MS.gene26662

KEGG: K15283
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF03151.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26662.t1	XP_013456952.1	100	396	0	0	1	396	1	396	2.10E-215	758.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26662.t1	P21727	92.7	398	26	2	1	396	1	397	6.3e-200	698.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26662.t1	A0A072UPN1	100.0	396	0	0	1	396	1	396	1.5e-215	758.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene26662	0.802705	4.94E-49	-1.69E-46
MS.gene049171	MS.gene26662	0.937919	1.58E-98	-1.69E-46
MS.gene049173	MS.gene26662	0.879527	1.16E-69	-1.69E-46
MS.gene049181	MS.gene26662	-0.821373	4.18E-53	-1.69E-46
MS.gene049217	MS.gene26662	0.906355	1.62E-80	-1.69E-46
MS.gene049222	MS.gene26662	0.933775	1.12E-95	-1.69E-46
MS.gene049232	MS.gene26662	0.928482	2.71E-92	-1.69E-46
MS.gene049259	MS.gene26662	-0.823427	1.39E-53	-1.69E-46
MS.gene049281	MS.gene26662	-0.83108	2.04E-55	-1.69E-46
MS.gene049285	MS.gene26662	0.96454	1.86E-123	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene011488	MS.gene26662	PPI
MS.gene031892	MS.gene26662	PPI
MS.gene039961	MS.gene26662	PPI
MS.gene26662	MS.gene007969	PPI
MS.gene99882	MS.gene26662	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26662.t1	MTR_4g088350	100.000	396	0	0	1	396	1	396	0.0	801
MS.gene26662.t1	MTR_5g044220	77.077	349	69	4	59	396	53	401	0.0	541
MS.gene26662.t1	MTR_4g088350	99.262	271	2	0	126	396	15	285	0.0	539
MS.gene26662.t1	MTR_3g049400	44.898	294	153	4	100	388	111	400	5.56e-76	241
MS.gene26662.t1	MTR_2g022700	43.771	297	158	4	97	388	102	394	4.80e-75	239
MS.gene26662.t1	MTR_2g029180	38.727	377	204	11	18	385	33	391	8.69e-67	218
MS.gene26662.t1	MTR_4g131800	42.089	316	159	4	97	388	99	414	1.22e-65	226
MS.gene26662.t1	MTR_6g005480	42.434	304	158	7	96	388	110	407	1.34e-63	210
MS.gene26662.t1	MTR_4g105630	38.689	305	169	7	94	388	80	376	2.36e-60	200
MS.gene26662.t1	MTR_3g077640	37.941	340	190	7	69	398	82	410	2.02e-59	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26662.t1	AT5G46110	78.133	407	80	3	1	398	1	407	0.0	627
MS.gene26662.t1	AT5G46110	78.272	405	79	3	1	396	1	405	0.0	625
MS.gene26662.t1	AT5G46110	76.049	405	77	4	1	396	1	394	0.0	598
MS.gene26662.t1	AT5G46110	91.753	291	24	0	106	396	2	292	0.0	551
MS.gene26662.t1	AT5G54800	44.164	317	163	5	77	388	80	387	5.74e-79	249
MS.gene26662.t1	AT1G61800	44.444	297	156	4	97	388	95	387	1.11e-74	238
MS.gene26662.t1	AT1G61800	43.813	299	159	4	97	390	95	389	2.75e-74	237
MS.gene26662.t1	AT5G17630	42.574	303	164	5	97	393	110	408	1.75e-70	228
MS.gene26662.t1	AT3G01550	39.550	311	177	4	96	398	76	383	1.12e-60	201
MS.gene26662.t1	AT5G33320	38.742	302	167	5	97	388	106	399	2.60e-57	193

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Find 111 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACTCCCACCAATAAA+TGG	0.287957	4.1:+21956859	None:intergenic
AACAAGATTTCCACCCAAAC+TGG	0.413459	4.1:-21955033	MS.gene26662:CDS
AACTGATCCGATCGATTTCA+CGG	0.408658	4.1:+21958292	None:intergenic
AAGAAGTTACCAAGAACAAC+GGG	0.487858	4.1:+21956082	None:intergenic
AAGCCGGTCTTCAACAGTGT+AGG	0.642574	4.1:+21955460	None:intergenic
AAGTATCCGGCTCTTACTAC+CGG	0.543311	4.1:-21958037	MS.gene26662:CDS
AAGTGAGAGCCATAGAGTGA+TGG	0.522847	4.1:+21956108	None:intergenic
AAGTTTGTTGAGACGAGGGA+GGG	0.518226	4.1:+21958352	None:intergenic
AATCAATTCACTCACAATTA+AGG	0.248369	4.1:+21955611	None:intergenic
AATCAATTCCCATCACTCTA+TGG	0.376851	4.1:-21956117	MS.gene26662:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAAGTTAGACCTGGT+TGG	-	chr4.1:21956654-21956673	MS.gene26662:intron	30.0%
AACCATGATGATTGCTTAAT+AGG	-	chr4.1:21956560-21956579	MS.gene26662:intron	30.0%
ATGTGCTAAAAAGGACATTA+TGG	-	chr4.1:21955847-21955866	MS.gene26662:CDS	30.0%
ATTGAAAATGAGGATTTACC+TGG	+	chr4.1:21957975-21957994	None:intergenic	30.0%
ATTTGATCCCATAGATTGAA+GGG	-	chr4.1:21957845-21957864	MS.gene26662:intron	30.0%
GAAAAATTGATCATATGGAG+AGG	-	chr4.1:21957359-21957378	MS.gene26662:intron	30.0%
GTAATCATATGTGTTAGTGT+CGG	-	chr4.1:21955453-21955472	MS.gene26662:CDS	30.0%
TAAGAAGTTACCAAGAACAA+CGG	+	chr4.1:21957250-21957269	None:intergenic	30.0%
TAAGATACAAGGATAAGACA+TGG	+	chr4.1:21955802-21955821	None:intergenic	30.0%
TAAGCAATCATCATGGTTTA+GGG	+	chr4.1:21956558-21956577	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	21954936	21958414	21954936	ID=MS.gene26662
chr4.1	mRNA	21954936	21958414	21954936	ID=MS.gene26662.t1;Parent=MS.gene26662
chr4.1	exon	21958173	21958414	21958173	ID=MS.gene26662.t1.exon1;Parent=MS.gene26662.t1
chr4.1	CDS	21958173	21958414	21958173	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21958019	21958093	21958019	ID=MS.gene26662.t1.exon2;Parent=MS.gene26662.t1
chr4.1	CDS	21958019	21958093	21958019	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21957608	21957673	21957608	ID=MS.gene26662.t1.exon3;Parent=MS.gene26662.t1
chr4.1	CDS	21957608	21957673	21957608	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21956818	21956896	21956818	ID=MS.gene26662.t1.exon4;Parent=MS.gene26662.t1
chr4.1	CDS	21956818	21956896	21956818	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21956276	21956396	21956276	ID=MS.gene26662.t1.exon5;Parent=MS.gene26662.t1
chr4.1	CDS	21956276	21956396	21956276	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21956092	21956187	21956092	ID=MS.gene26662.t1.exon6;Parent=MS.gene26662.t1
chr4.1	CDS	21956092	21956187	21956092	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21955808	21955920	21955808	ID=MS.gene26662.t1.exon7;Parent=MS.gene26662.t1
chr4.1	CDS	21955808	21955920	21955808	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21955626	21955703	21955626	ID=MS.gene26662.t1.exon8;Parent=MS.gene26662.t1
chr4.1	CDS	21955626	21955703	21955626	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21955375	21955491	21955375	ID=MS.gene26662.t1.exon9;Parent=MS.gene26662.t1
chr4.1	CDS	21955375	21955491	21955375	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21955180	21955279	21955180	ID=MS.gene26662.t1.exon10;Parent=MS.gene26662.t1
chr4.1	CDS	21955180	21955279	21955180	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1
chr4.1	exon	21954936	21955057	21954936	ID=MS.gene26662.t1.exon11;Parent=MS.gene26662.t1
chr4.1	CDS	21954936	21955057	21954936	ID=cds.MS.gene26662.t1;Parent=MS.gene26662.t1

Gene Sequence

>MS.gene26662

ATGGAGTCACGAGTGTTATCACGCGCCACCACACTCTCCTCCCTCCCTCGTCTCAACAAACTTCATCGTGAACACCTCACCAATGGCGCTTCCATCCTCTCCGTGAAATCGATCGGATCAGTTTCTGATGGCGGGAACCTTGTCTTTGGAAGACAACTTCGTCCTGAACTCTGTTCACCGGCTCTTAAGAAAAGTGGTGTACTCCTCCGTCCTTGCCTCGCCGCTGCCGATGATTCCGCCGGGTGAGGTCCGTTTAATCCGTTCTGACTTAAAAATTCCGTCGTGTAACTGTACTCACTAATGTTGTTTTTTTGTTTACAGGGGAGAGAAGGTTGCTCCGGTTGGATTCTTTAGCAAGTATCCGGCTCTTACTACCGGTTTTTTCTTCTTCACTTGGTAAGTCACGCCGATGAAACACTGATACAGACACGAACATAACACTGACCATATATAATAATTAGAAAAATAGTATAATCATATATAATAATTAAAATAAAAATAGTATAATTTATTTAATGTAATCATATGTGTTAGTGTCGGATCATGATACTAATATGTGTCGGACACCGAACACGGCTACAATACCTAAGAGAGTGTCTGTGTTTGTGTTTCTTTTACTCTGTTTTCTCTTTTGTGAAGCTTGTTACTGTAACTGTGTACTTGAGATAAACCACATCGTGTGTGAGTGGTTGTGATCGCTTTAAAGTGTTGAATTTACGTTTTTGTCCTTTTGATATGCAGGTACTTTTTGAATGTGATTTTCAACATCCTCAACAAGAAGATCTATAATTATTTCCCCTATCCTTAGTAAGTTATTAAAATTCGTTTTATATTTCCATCTTGGTCCTGTTCGTTCATGTATTCCATGTCTTATCCTTGTATCTTATTATTTTTTGATTCATTGTATCTTCATGTGCTAAAAAGGACATTATGGAAAAATTAACTAATAGCTTATGTAGTGTTATTGAATTTTTAAAATTTATTATTTTCATTTATTTATATGTTAGTTTAATTGTATGCTACATTTTTTTATACAAAATGTATGTCACGCTAGAATTCAGATTTACCCTTCAAAAAAAGAATTCAGATTTAATTGATCAGTAATGTTAATGTATTTTCTTTTTATTTACACTATCAATCTTTTTTTTTTTTTTGAGGAAGTTTACACTATCAATCAATAATCATTAGATCGCTAAAATAATTGATTTTAATTATATCTACTTTGTCAAGATCACACAATTATATCTACTTTGTAATAAAAAAGAATGTATCTACTTTTTTTACGGATTATTCATATCTAACTTAAAAGTCATTCAAATGATTGTTTATGATGATCAATCGCAAGATAGTAACATTTTTTACATTCAGTTGCATCAAAATTTTCTTCGAATTCTATAATTGAATTTCATTATGCGTATGTTAGATTAGACTTTTATAGTATATGAAATTAAAAAAATTCCTTAGTTTCTTTTCTTGTCATAAGTTTTGTTAACTTTGATTGACTGTGTGTATGTGCAGCTTCGTGTCGGTTATCCATTTATTGGTGGGAGTGGTTTACTGTTTGGTCAGCTGGACCGTGGGCCTTCCTAAGCGCGCAGTAAGTCTCTCGGCCCATAATCCCCTAAACCATGATGATTGCTTAATAGGTCCCTTGAATTACTCAAAATTCGCAAAAACAAACATTAGAAGTTAGACCTGGTCGGTTTCTTAAAAAAAAAAAAAAAAAGTTAGACCTGGTTGGTTTTTTAAGCTATAAAATGTTCATCAGAAGTTACGATCCGATGGGTTGAACAATTCTGAAGGGCCTGTTGAGCAATGCTGGCTACGCCACCACTTTTCTGAATTCACCATGTTATGTTATTAATCGGTTAAGGTTTTTTCATGAAATCAACCTTTTGAGACGCTACTAGTTTATAGTTTCACAATAAATAAGTTAGGCTATTTTACTTGTAGTTCATTTTTCATGAATGATCTATTATATGAACGATAATTATAGTGATATGATATTGTTTGTGTAGCCAATAGACGGCAACCAGCTGAAGTTGCTGATTCCCGTAGCTGTGTGTCATGCATTAGGCCATGTGACCAGCAATGTCTCATTTGCTGCAGTTGCTGTTTCTTTCACACATACCATCAAAGGTGACATAAAACTTTATGATAAAGATATGGAAAGAGATCTACTTTAATTTCTAACTGTGATAATTGAAATTAAACTCGTGTGTTTCAGCTCTTGAGCCATTCTTTAATGCTGCTGCTTCACAATTCATACTTGGACAATCAATTCCCATCACTCTATGGCTCTCACTTGCTCCCGTTGTTCTTGGTAACTTCTTAATTATCTTTTTCATTATTCTTTCAAGTTCAGCTATGATTATCGATACATTTGTTTTAGTTCCACTTACAACAATCCTTCATGTATGCATGAAAAATTGATCATATGGAGAGGAATTTAGTAACTGGAATTTGTAGTAATTTTGTTTGTGACACTTTTCAGGTGTGTCGTTGGCATCATTGACTGAGCTCTCATTCAATTGGCTCGGCTTCATAAGTGCTATGATTTCAAACATTTCATTTACATACAGGAGTATCTATTCAAAGAAAGCCATGGTTAATTATATACCTTCTTCTCCAACTTCATTCCTAGCAAATATACTTAGATTTTTTTTTTATCATATTGTATTATTATTGTTATTAAATAACTCTTTGTGCAGACTGATATGGACAGTACCAATGTCTATGCCTACATTTCCATCATTGCTCTAATTGTCTGCATACCACCGGCCTTAATTGTGAGTGAATTGATTAACATTTCTTATTTCCCATGAATTAATACTTAATCTGTATTAATGTGGATTCTATCATAAAATACTTTGCTCTTGTTTTGGCATTGCATTCTCAATTGTTTCATGATTTGATCCCATAGATTGAAGGGCCTACACTGTTGAAGACCGGCTTCGCTGATGCAATTGCTAAAGTAGGTTTGGTCAAATTCGTATCAGATCTCTTCTGGGTTGGTATGTTTTACCATCTCTACAACCAGGTAAATCCTCATTTTCAATGTAAACAATTTTGGATGATATTAAGCCTGCTGGAACTATATATTATATGTTATATACCTACATTTTTCATTGCCAGGTGGCCACCAACACATTGGAGAGAGTGGCTCCTCTCACTCATGCCGTTGGCAACGTACTCAAACGTGTATTTGTCATTGGATTTTCAATCATTATCTTCGGTAAATATTGTTTTCTTCCATCATATTATTGCACTTTTAAGTTTCACAAGTGTTTATTTACTTATATTGGGTTTCCATTCAAGAAATCTGACATTTTGATTGAATATAATTGCTTGACATAGGTAACAAGATTTCCACCCAAACTGGTATCGGAACTGCCATTGCAATTGCTGGAGTGGCACTCTACTCCTTCATCAAAGCCAAGATCGAGGAAGAGAAGCGAGTGAGTCTTGTTTTCATTTGA

Protein sequence

>MS.gene26662.t1

MESRVLSRATTLSSLPRLNKLHREHLTNGASILSVKSIGSVSDGGNLVFGRQLRPELCSPALKKSGVLLRPCLAAADDSAGGEKVAPVGFFSKYPALTTGFFFFTWYFLNVIFNILNKKIYNYFPYPYFVSVIHLLVGVVYCLVSWTVGLPKRAPIDGNQLKLLIPVAVCHALGHVTSNVSFAAVAVSFTHTIKALEPFFNAAASQFILGQSIPITLWLSLAPVVLGVSLASLTELSFNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPALIIEGPTLLKTGFADAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTAIAIAGVALYSFIKAKIEEEKRVSLVFI