AlfalfaGEDB | MS.gene062964

M. sativa cultivar XinJiangDaYe / MS.gene062964

KEGG: K14488
GO: GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896
PFAM: PF02519.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062964.t1	XP_003607123.1	95.7	92	4	0	1	92	1	92	6.10E-41	176.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062964.t1	P33080	69.6	92	28	0	1	92	1	92	4.4e-32	138.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062964.t1	G7JL45	95.7	92	4	0	1	92	1	92	4.4e-41	176.4

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene057807	MS.gene062964	0.860197	2.44E-63	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene003591	MS.gene062964	PPI
MS.gene062979	MS.gene062964	PPI
MS.gene003590	MS.gene062964	PPI
MS.gene062943	MS.gene062964	PPI
MS.gene062964	MS.gene057808	PPI
MS.gene014668	MS.gene062964	PPI
MS.gene003608	MS.gene062964	PPI
MS.gene79888	MS.gene062964	PPI
MS.gene40326	MS.gene062964	PPI
MS.gene77527	MS.gene062964	PPI
MS.gene50654	MS.gene062964	PPI
MS.gene062964	MS.gene68163	PPI
MS.gene50676	MS.gene062964	PPI
MS.gene003614	MS.gene062964	PPI
MS.gene50652	MS.gene062964	PPI
MS.gene23370	MS.gene062964	PPI
MS.gene50766	MS.gene062964	PPI
MS.gene003594	MS.gene062964	PPI
MS.gene79889	MS.gene062964	PPI
MS.gene50677	MS.gene062964	PPI
MS.gene003625	MS.gene062964	PPI
MS.gene68759	MS.gene062964	PPI
MS.gene01764	MS.gene062964	PPI
MS.gene062964	MS.gene75678	PPI
MS.gene50763	MS.gene062964	PPI
MS.gene40325	MS.gene062964	PPI
MS.gene79885	MS.gene062964	PPI
MS.gene01358	MS.gene062964	PPI
MS.gene50659	MS.gene062964	PPI
MS.gene75316	MS.gene062964	PPI
MS.gene75675	MS.gene062964	PPI
MS.gene003583	MS.gene062964	PPI
MS.gene062964	MS.gene50764	PPI
MS.gene057790	MS.gene062964	PPI
MS.gene062952	MS.gene062964	PPI
MS.gene045363	MS.gene062964	PPI
MS.gene003624	MS.gene062964	PPI
MS.gene031199	MS.gene062964	PPI
MS.gene75314	MS.gene062964	PPI
MS.gene057797	MS.gene062964	PPI
MS.gene77529	MS.gene062964	PPI
MS.gene68761	MS.gene062964	PPI
MS.gene014667	MS.gene062964	PPI
MS.gene68760	MS.gene062964	PPI
MS.gene003596	MS.gene062964	PPI
MS.gene75676	MS.gene062964	PPI
MS.gene50665	MS.gene062964	PPI
MS.gene062964	MS.gene014670	PPI
MS.gene003586	MS.gene062964	PPI
MS.gene057778	MS.gene062964	PPI
MS.gene062988	MS.gene062964	PPI
MS.gene75673	MS.gene062964	PPI
MS.gene045366	MS.gene062964	PPI
MS.gene062963	MS.gene062964	PPI
MS.gene77528	MS.gene062964	PPI
MS.gene062964	MS.gene75679	PPI
MS.gene68164	MS.gene062964	PPI
MS.gene031198	MS.gene062964	PPI
MS.gene75674	MS.gene062964	PPI
MS.gene031200	MS.gene062964	PPI
MS.gene045365	MS.gene062964	PPI
MS.gene045364	MS.gene062964	PPI
MS.gene003602	MS.gene062964	PPI
MS.gene23372	MS.gene062964	PPI
MS.gene003627	MS.gene062964	PPI
MS.gene003577	MS.gene062964	PPI
MS.gene77524	MS.gene062964	PPI
MS.gene062964	MS.gene79886	PPI
MS.gene062984	MS.gene062964	PPI
MS.gene062964	MS.gene014671	PPI
MS.gene062964	MS.gene50765	PPI
MS.gene057801	MS.gene062964	PPI
MS.gene014222	MS.gene062964	PPI
MS.gene23371	MS.gene062964	PPI
MS.gene031201	MS.gene062964	PPI
MS.gene062964	MS.gene75672	PPI
MS.gene062964	MS.gene062974	PPI
MS.gene062951	MS.gene062964	PPI
MS.gene045362	MS.gene062964	PPI
MS.gene062964	MS.gene045367	PPI
MS.gene77523	MS.gene062964	PPI
MS.gene003587	MS.gene062964	PPI
MS.gene045368	MS.gene062964	PPI
MS.gene063112	MS.gene062964	PPI
MS.gene062964	MS.gene002380	PPI
MS.gene79891	MS.gene062964	PPI
MS.gene79890	MS.gene062964	PPI
MS.gene003615	MS.gene062964	PPI
MS.gene79887	MS.gene062964	PPI
MS.gene062973	MS.gene062964	PPI
MS.gene77526	MS.gene062964	PPI
MS.gene047517	MS.gene062964	PPI
MS.gene062964	MS.gene50684	PPI
MS.gene045360	MS.gene062964	PPI
MS.gene014669	MS.gene062964	PPI
MS.gene057818	MS.gene062964	PPI
MS.gene062964	MS.gene75315	PPI
MS.gene68162	MS.gene062964	PPI
MS.gene014223	MS.gene062964	PPI
MS.gene50687	MS.gene062964	PPI
MS.gene40327	MS.gene062964	PPI
MS.gene75677	MS.gene062964	PPI
MS.gene057795	MS.gene062964	PPI
MS.gene68165	MS.gene062964	PPI
MS.gene045361	MS.gene062964	PPI
MS.gene50675	MS.gene062964	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062964.t1	MTR_4g072500	95.652	92	4	0	1	92	1	92	1.41e-61	182
MS.gene062964.t1	MTR_4g072530	95.556	90	4	0	1	90	1	90	2.66e-60	179
MS.gene062964.t1	MTR_4g072640	90.110	91	9	0	1	91	1	91	3.08e-57	171
MS.gene062964.t1	MTR_4g072570	79.348	92	19	0	1	92	1	92	1.44e-49	152
MS.gene062964.t1	MTR_4g072310	74.194	93	23	1	1	92	1	93	1.20e-48	149
MS.gene062964.t1	MTR_4g072480	78.261	92	20	0	1	92	1	92	1.90e-48	149
MS.gene062964.t1	MTR_4g072680	78.261	92	20	0	1	92	1	92	3.60e-48	148
MS.gene062964.t1	MTR_4g072730	77.778	90	20	0	1	90	1	90	8.56e-48	147
MS.gene062964.t1	MTR_4g072230	75.269	93	20	2	1	92	1	91	2.21e-47	146
MS.gene062964.t1	MTR_3g084150	72.826	92	25	0	1	92	1	92	2.80e-47	146
MS.gene062964.t1	MTR_4g072620	76.087	92	22	0	1	92	1	92	3.81e-47	145
MS.gene062964.t1	MTR_4g072880	69.892	93	27	1	1	92	1	93	4.05e-47	145
MS.gene062964.t1	MTR_4g072860	74.194	93	23	1	1	92	1	93	2.71e-46	143
MS.gene062964.t1	MTR_4g072460	76.087	92	22	0	1	92	1	92	3.46e-46	143
MS.gene062964.t1	MTR_4g072270	70.968	93	26	1	1	92	1	93	5.96e-46	142
MS.gene062964.t1	MTR_3g084180	71.739	92	26	0	1	92	1	92	6.82e-46	142
MS.gene062964.t1	MTR_8g461410	70.652	92	27	0	1	92	1	92	7.13e-46	142
MS.gene062964.t1	MTR_4g072250	73.118	93	23	2	1	92	1	92	1.59e-45	141
MS.gene062964.t1	MTR_4g072240	68.132	91	28	1	1	90	1	91	4.14e-45	140
MS.gene062964.t1	MTR_3g117630	74.713	87	22	0	6	92	6	92	5.19e-45	140
MS.gene062964.t1	MTR_4g072870	68.132	91	28	1	1	90	1	91	5.63e-45	140
MS.gene062964.t1	MTR_3g084240	74.194	93	22	2	1	92	1	92	8.33e-45	139
MS.gene062964.t1	MTR_4g072220	67.742	93	29	1	1	92	1	93	1.36e-44	139
MS.gene062964.t1	MTR_3g084170	74.194	93	22	2	1	92	1	92	3.14e-44	138
MS.gene062964.t1	MTR_4g050700	70.968	93	26	1	1	92	1	93	3.57e-44	138
MS.gene062964.t1	MTR_2g012410	70.968	93	26	1	1	92	1	93	3.57e-44	138
MS.gene062964.t1	MTR_3g084250	69.565	92	28	0	1	92	1	92	1.24e-43	137
MS.gene062964.t1	MTR_3g110042	73.034	89	24	0	1	89	1	89	1.24e-43	137
MS.gene062964.t1	MTR_4g072300	64.835	91	31	1	1	90	1	91	8.85e-43	134
MS.gene062964.t1	MTR_3g084220	73.118	93	23	2	1	92	1	92	2.42e-42	133
MS.gene062964.t1	MTR_3g110038	70.968	93	25	2	1	92	1	92	3.33e-42	133
MS.gene062964.t1	MTR_4g072330	70.330	91	23	2	1	90	1	88	1.29e-41	131
MS.gene062964.t1	MTR_4g072260	63.441	93	33	1	1	92	1	93	2.39e-41	131
MS.gene062964.t1	MTR_4g072850	72.340	94	24	1	1	92	1	94	2.41e-41	131
MS.gene062964.t1	MTR_4g072660	70.652	92	22	1	1	92	1	87	5.49e-41	130
MS.gene062964.t1	MTR_3g110032	67.742	93	29	1	1	92	1	93	6.62e-41	130
MS.gene062964.t1	MTR_4g072370	70.330	91	23	2	1	90	1	88	6.69e-41	130
MS.gene062964.t1	MTR_4g072890	64.835	91	31	1	1	90	1	91	7.36e-41	129
MS.gene062964.t1	MTR_3g084190	70.652	92	27	0	1	92	1	92	7.75e-41	129
MS.gene062964.t1	MTR_5g008360	77.215	79	18	0	14	92	5	83	1.50e-40	129
MS.gene062964.t1	MTR_8g461420	70.652	92	27	0	1	92	1	92	2.10e-40	128
MS.gene062964.t1	MTR_3g084160	68.478	92	29	0	1	92	1	92	7.67e-40	127
MS.gene062964.t1	MTR_3g084210	71.739	92	26	0	1	92	1	92	1.18e-39	127
MS.gene062964.t1	MTR_3g084260	67.033	91	29	1	1	90	1	91	4.82e-39	125
MS.gene062964.t1	MTR_3g110045	73.333	90	24	0	3	92	62	151	5.06e-39	127
MS.gene062964.t1	MTR_3g084230	69.565	92	28	0	1	92	1	92	5.34e-39	125
MS.gene062964.t1	MTR_4g072490	65.934	91	24	2	1	90	1	85	6.90e-39	124
MS.gene062964.t1	MTR_4g072830	70.000	90	23	2	1	89	1	87	1.32e-38	124
MS.gene062964.t1	MTR_4g072940	76.389	72	17	0	21	92	53	124	2.24e-38	124
MS.gene062964.t1	MTR_5g008370	80.822	73	14	0	18	90	18	90	3.09e-38	124
MS.gene062964.t1	MTR_4g072630	66.667	90	26	1	1	90	1	86	3.52e-38	122
MS.gene062964.t1	MTR_4g072540	65.556	90	27	1	1	90	1	86	6.17e-38	122
MS.gene062964.t1	MTR_4g072820	68.889	90	23	2	1	90	1	85	7.59e-38	122
MS.gene062964.t1	MTR_4g072740	67.033	91	23	2	1	90	1	85	8.14e-38	122
MS.gene062964.t1	MTR_4g072580	64.835	91	25	2	1	90	1	85	3.05e-37	120
MS.gene062964.t1	MTR_4g072470	67.033	91	23	2	1	90	1	85	5.86e-37	119
MS.gene062964.t1	MTR_4g072550	77.778	72	16	0	21	92	32	103	1.49e-36	119
MS.gene062964.t1	MTR_4g072600	64.835	91	25	2	1	90	1	85	2.42e-36	118
MS.gene062964.t1	MTR_4g072720	64.444	90	28	1	1	90	1	86	2.90e-36	118
MS.gene062964.t1	MTR_4g072465	62.222	90	30	1	1	90	1	86	9.36e-36	116
MS.gene062964.t1	MTR_4g072610	64.444	90	26	1	1	90	1	84	1.18e-35	116
MS.gene062964.t1	MTR_4g072750	67.059	85	24	2	1	81	1	85	1.40e-35	116
MS.gene062964.t1	MTR_4g072650	63.736	91	27	1	1	91	1	85	3.85e-35	115
MS.gene062964.t1	MTR_4g072670	63.333	90	29	1	1	90	1	86	6.24e-35	114
MS.gene062964.t1	MTR_4g072510	62.222	90	30	1	1	90	1	86	6.89e-35	114
MS.gene062964.t1	MTR_4g072590	64.444	90	27	1	1	90	1	85	7.31e-34	112
MS.gene062964.t1	MTR_4g072290	62.366	93	20	2	1	92	1	79	1.26e-33	111
MS.gene062964.t1	MTR_4g072380	63.736	91	27	3	1	90	1	86	3.14e-32	108
MS.gene062964.t1	MTR_4g072450	62.222	90	29	1	1	90	1	85	6.83e-32	107
MS.gene062964.t1	MTR_4g072560	54.639	97	36	2	1	89	1	97	8.20e-32	107
MS.gene062964.t1	MTR_4g072690	62.222	90	29	1	1	90	1	85	1.35e-31	106
MS.gene062964.t1	MTR_4g072910	63.514	74	27	0	17	90	27	100	6.95e-31	105
MS.gene062964.t1	MTR_3g084200	68.493	73	21	2	1	72	1	72	2.76e-30	103
MS.gene062964.t1	MTR_4g072280	62.667	75	27	1	1	74	1	75	3.00e-30	102
MS.gene062964.t1	MTR_4g072980	56.522	92	37	2	1	89	1	92	8.47e-30	102
MS.gene062964.t1	MTR_4g072770	56.667	90	29	1	1	90	1	80	2.25e-29	100
MS.gene062964.t1	MTR_5g008350	60.000	80	25	2	1	79	1	74	6.28e-29	99.4
MS.gene062964.t1	MTR_3g117640	70.149	67	19	1	24	89	33	99	4.77e-28	97.8
MS.gene062964.t1	MTR_3g113310	62.121	66	24	1	24	89	41	105	2.46e-25	91.3
MS.gene062964.t1	MTR_3g110035	62.121	66	25	0	27	92	73	138	5.19e-25	91.3
MS.gene062964.t1	MTR_6g077850	53.623	69	32	0	22	90	31	99	5.22e-25	90.1
MS.gene062964.t1	MTR_3g117610	64.062	64	22	1	24	87	44	106	9.71e-24	87.0
MS.gene062964.t1	MTR_4g072190	62.121	66	24	1	24	89	35	99	2.19e-23	85.9
MS.gene062964.t1	MTR_8g461400	52.688	93	16	3	1	92	1	66	1.69e-22	82.8
MS.gene062964.t1	MTR_4g072930	56.522	69	26	1	26	90	42	110	1.44e-21	81.6
MS.gene062964.t1	MTR_8g076040	57.812	64	26	1	24	87	40	102	1.66e-20	79.0
MS.gene062964.t1	MTR_5g021820	46.512	86	42	2	7	89	19	103	2.29e-20	78.6
MS.gene062964.t1	MTR_4g124750	43.182	88	43	3	4	87	46	130	1.25e-17	72.8
MS.gene062964.t1	MTR_2g043960	46.914	81	41	2	6	85	56	135	1.38e-17	72.8
MS.gene062964.t1	MTR_4g072840	43.333	90	21	2	1	90	1	60	1.14e-16	67.8
MS.gene062964.t1	MTR_1g024085	51.471	68	32	1	16	83	28	94	3.88e-16	68.9
MS.gene062964.t1	MTR_7g118010	50.000	68	31	2	25	90	23	89	5.40e-16	67.4
MS.gene062964.t1	MTR_4g005310	50.000	66	32	1	21	85	58	123	5.78e-16	68.6
MS.gene062964.t1	MTR_4g025830	45.070	71	35	2	22	89	76	145	1.34e-15	67.8
MS.gene062964.t1	MTR_0388s0020	40.909	88	47	3	5	89	56	141	1.40e-15	67.4
MS.gene062964.t1	MTR_4g072160	50.725	69	33	1	17	85	29	96	2.15e-15	66.6
MS.gene062964.t1	MTR_3g092220	47.692	65	31	2	21	83	29	92	7.16e-15	64.7
MS.gene062964.t1	MTR_8g026730	47.059	68	33	2	25	90	27	93	8.22e-15	64.3
MS.gene062964.t1	MTR_8g461210	41.463	82	47	1	4	85	14	94	9.85e-15	64.3
MS.gene062964.t1	MTR_1g094750	41.860	86	45	2	10	91	31	115	1.02e-14	64.3
MS.gene062964.t1	MTR_1g061570	47.619	63	32	1	23	85	17	78	1.05e-14	64.7
MS.gene062964.t1	MTR_1g009150	50.000	64	31	1	22	85	68	130	4.76e-14	63.9
MS.gene062964.t1	MTR_1g059770	38.571	70	42	1	20	89	44	112	5.01e-13	60.5
MS.gene062964.t1	MTR_2g066830	37.864	103	42	4	2	92	41	133	9.23e-13	60.1
MS.gene062964.t1	MTR_4g005320	47.541	61	31	1	25	85	70	129	1.14e-12	60.1
MS.gene062964.t1	MTR_7g101740	46.875	64	33	1	24	87	39	101	1.28e-12	58.9
MS.gene062964.t1	MTR_1g063950	46.667	60	31	1	23	82	46	104	2.15e-12	58.5
MS.gene062964.t1	MTR_3g109160	42.857	77	43	1	9	85	53	128	3.05e-12	59.3
MS.gene062964.t1	MTR_7g405740	40.909	66	38	1	25	90	67	131	1.37e-11	57.4
MS.gene062964.t1	MTR_3g105900	64.865	37	13	0	23	59	1170	1206	1.83e-11	58.9
MS.gene062964.t1	MTR_8g096470	43.333	60	33	1	26	85	47	105	2.71e-11	55.5
MS.gene062964.t1	MTR_7g104940	40.323	62	36	1	28	89	53	113	2.73e-11	55.8
MS.gene062964.t1	MTR_3g098970	32.955	88	57	2	5	92	34	119	3.46e-11	56.2
MS.gene062964.t1	MTR_3g097120	39.241	79	39	2	21	91	5	82	3.69e-11	55.1
MS.gene062964.t1	MTR_8g101520	36.585	82	51	1	10	91	35	115	6.83e-11	55.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062964.t1	AT4G38840	58.824	85	34	1	7	90	15	99	6.75e-32	107
MS.gene062964.t1	AT5G18020	61.333	75	28	1	16	89	15	89	1.58e-30	103
MS.gene062964.t1	AT5G18060	62.667	75	27	1	16	89	15	89	2.36e-30	103
MS.gene062964.t1	AT4G34770	63.095	84	26	2	9	90	22	102	3.29e-30	103
MS.gene062964.t1	AT5G18080	61.333	75	28	1	16	89	15	89	3.39e-30	102
MS.gene062964.t1	AT4G38850	63.889	72	23	1	21	89	17	88	4.33e-30	102
MS.gene062964.t1	AT2G21200	65.714	70	23	1	21	89	17	86	7.59e-30	102
MS.gene062964.t1	AT5G18050	61.538	78	27	2	13	89	14	89	1.14e-29	101
MS.gene062964.t1	AT5G18030	62.857	70	25	1	22	90	19	88	2.51e-29	100
MS.gene062964.t1	AT3G03840	62.500	72	25	1	21	90	23	94	2.51e-29	100
MS.gene062964.t1	AT4G38825	60.000	75	29	1	17	90	15	89	1.05e-28	99.4
MS.gene062964.t1	AT3G03850	66.197	71	22	1	22	90	22	92	1.99e-28	98.6
MS.gene062964.t1	AT5G18010	57.895	76	31	1	16	90	15	90	2.13e-28	98.6
MS.gene062964.t1	AT3G03820	61.644	73	25	1	21	90	23	95	2.52e-28	98.6
MS.gene062964.t1	AT2G21210	61.765	68	24	1	25	90	28	95	5.03e-28	97.8
MS.gene062964.t1	AT2G21210	61.765	68	24	1	25	90	95	162	2.69e-27	97.8
MS.gene062964.t1	AT4G34800	55.294	85	31	2	1	82	1	81	1.15e-26	94.4
MS.gene062964.t1	AT3G03830	51.136	88	36	2	10	90	5	92	1.57e-26	93.6
MS.gene062964.t1	AT4G34810	69.355	62	15	1	25	82	48	109	5.42e-26	93.2
MS.gene062964.t1	AT4G13790	52.941	85	32	3	7	89	13	91	3.84e-25	90.1
MS.gene062964.t1	AT4G34790	68.657	67	18	2	25	88	39	105	6.96e-25	90.1
MS.gene062964.t1	AT4G34780	62.857	70	23	1	25	91	28	97	3.22e-23	85.9
MS.gene062964.t1	AT4G38860	59.701	67	27	0	24	90	39	105	5.84e-23	85.1
MS.gene062964.t1	AT1G75580	64.615	65	22	1	25	89	44	107	6.76e-23	85.1
MS.gene062964.t1	AT4G34760	60.606	66	25	1	24	89	42	106	1.10e-22	84.3
MS.gene062964.t1	AT2G21220	59.091	66	26	1	24	89	39	103	1.87e-22	84.0
MS.gene062964.t1	AT2G16580	56.061	66	28	1	24	89	43	107	2.57e-19	75.9
MS.gene062964.t1	AT1G19830	59.701	67	25	2	24	89	47	112	5.23e-19	75.5
MS.gene062964.t1	AT4G36110	56.250	64	27	1	24	87	39	101	2.94e-18	73.2
MS.gene062964.t1	AT3G43120	45.833	72	38	1	14	85	68	138	4.93e-18	73.9
MS.gene062964.t1	AT2G18010	54.688	64	28	1	24	87	47	109	6.92e-18	72.4
MS.gene062964.t1	AT5G66260	51.515	66	31	1	25	90	34	98	7.02e-17	69.3
MS.gene062964.t1	AT3G20220	47.222	72	36	2	15	85	37	107	8.96e-17	69.7
MS.gene062964.t1	AT5G20810	51.613	62	29	1	24	85	78	138	1.53e-16	70.5
MS.gene062964.t1	AT5G20810	51.613	62	29	1	24	85	78	138	2.64e-16	70.1
MS.gene062964.t1	AT1G75590	47.945	73	37	1	11	83	28	99	4.68e-16	68.9
MS.gene062964.t1	AT3G60690	47.222	72	34	2	21	89	84	154	9.62e-16	68.6
MS.gene062964.t1	AT3G61900	40.476	84	46	2	10	90	15	97	2.67e-15	66.2
MS.gene062964.t1	AT5G10990	52.459	61	28	1	23	83	39	98	3.39e-15	66.6
MS.gene062964.t1	AT4G34750	46.154	65	34	1	23	87	35	98	3.94e-15	66.2
MS.gene062964.t1	AT4G34750	46.154	65	34	1	23	87	35	98	3.94e-15	66.2
MS.gene062964.t1	AT1G19840	46.667	75	39	1	9	83	25	98	5.54e-15	65.9
MS.gene062964.t1	AT2G45210	44.444	72	36	2	21	89	75	145	6.08e-15	66.2
MS.gene062964.t1	AT2G46690	41.892	74	39	2	17	87	16	88	1.18e-14	64.3
MS.gene062964.t1	AT3G51200	50.000	60	28	2	24	82	38	96	1.24e-13	61.2
MS.gene062964.t1	AT4G00880	50.000	64	29	2	24	85	27	89	2.19e-13	61.2
MS.gene062964.t1	AT2G36210	41.096	73	43	0	15	87	44	116	2.55e-13	61.2
MS.gene062964.t1	AT5G53590	43.836	73	35	2	24	91	45	116	4.92e-13	60.8
MS.gene062964.t1	AT2G37030	46.032	63	33	1	24	86	48	109	6.11e-13	60.1
MS.gene062964.t1	AT4G31320	44.156	77	36	2	9	85	70	139	7.81e-13	61.2
MS.gene062964.t1	AT3G03847	62.791	43	16	0	43	85	88	130	2.63e-12	58.5
MS.gene062964.t1	AT2G24400	43.373	83	40	2	9	91	54	129	2.86e-12	59.3
MS.gene062964.t1	AT4G12410	46.875	64	30	2	25	85	76	138	3.11e-12	58.9
MS.gene062964.t1	AT3G12830	39.506	81	47	2	10	90	36	114	4.90e-12	57.8
MS.gene062964.t1	AT4G22620	42.647	68	35	2	21	85	75	141	5.64e-12	58.5
MS.gene062964.t1	AT4G09530	53.191	47	20	1	22	66	25	71	1.11e-11	56.2
MS.gene062964.t1	AT3G09870	45.714	70	35	2	18	85	38	106	1.88e-11	55.8
MS.gene062964.t1	AT1G56150	45.455	66	35	1	25	90	38	102	3.52e-11	55.1

Find 20 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGTTGGTTCAAGTATGATAT+TGG	0.247037	4.2:-35488878	None:intergenic
CATCAAGCCGAAGAAGAATT+TGG	0.272445	4.2:+35488920	MS.gene062964:CDS
ATCATATCCAAATTCTTCTT+CGG	0.372966	4.2:-35488927	None:intergenic
GTTGGTTCAAGTATGATATT+GGG	0.382183	4.2:-35488877	None:intergenic
TACACTGCAACATAACCCTT+TGG	0.462446	4.2:-35488824	None:intergenic
CCGTTTAAATGTTATTCGAC+GGG	0.490221	4.2:+35488757	MS.gene062964:CDS
GACATCTTCAGTACAATGAA+TGG	0.503224	4.2:-35488969	None:intergenic
GCAATTCTTGAAACAATGGT+TGG	0.506239	4.2:-35488895	None:intergenic
CCCGTCGAATAACATTTAAA+CGG	0.509917	4.2:-35488757	None:intergenic
GGTTATGTTGCAGTGTATGT+TGG	0.510283	4.2:+35488830	MS.gene062964:CDS
TCCGTTTAAATGTTATTCGA+CGG	0.527380	4.2:+35488756	MS.gene062964:CDS
AAAATCAGCAGAAGTTCCAA+AGG	0.578786	4.2:+35488808	MS.gene062964:CDS
ATGAATGGTGAGTCCACCCA+TGG	0.584103	4.2:-35488954	None:intergenic
ATTTGGATATGATCATCCCA+TGG	0.585205	4.2:+35488937	MS.gene062964:CDS
TGTAGCAATTCTTGAAACAA+TGG	0.591172	4.2:-35488899	None:intergenic
AAATCAGCAGAAGTTCCAAA+GGG	0.600409	4.2:+35488809	MS.gene062964:CDS
TTTGGATATGATCATCCCAT+GGG	0.624132	4.2:+35488938	MS.gene062964:CDS
GGATATGATCATCCCATGGG+TGG	0.643553	4.2:+35488941	MS.gene062964:CDS
TGAATGGTGAGTCCACCCAT+GGG	0.727959	4.2:-35488953	None:intergenic
ATGTTGGAGAGAAACAGAAG+CGG	0.743921	4.2:+35488846	MS.gene062964:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	ATCATATCCAAATTCTTCTT+CGG	-	chr4.2:35488930-35488949	None:intergenic	25.0%
	TCCGTTTAAATGTTATTCGA+CGG	+	chr4.2:35488756-35488775	MS.gene062964:CDS	30.0%
	TGTAGCAATTCTTGAAACAA+TGG	-	chr4.2:35488902-35488921	None:intergenic	30.0%
!	GTTGGTTCAAGTATGATATT+GGG	-	chr4.2:35488880-35488899	None:intergenic	30.0%
	AAAATCAGCAGAAGTTCCAA+AGG	+	chr4.2:35488808-35488827	MS.gene062964:CDS	35.0%
	AAATCAGCAGAAGTTCCAAA+GGG	+	chr4.2:35488809-35488828	MS.gene062964:CDS	35.0%
	ATTTGGATATGATCATCCCA+TGG	+	chr4.2:35488937-35488956	MS.gene062964:CDS	35.0%
	CCCGTCGAATAACATTTAAA+CGG	-	chr4.2:35488760-35488779	None:intergenic	35.0%
	CCGTTTAAATGTTATTCGAC+GGG	+	chr4.2:35488757-35488776	MS.gene062964:CDS	35.0%
	GACATCTTCAGTACAATGAA+TGG	-	chr4.2:35488972-35488991	None:intergenic	35.0%
	GCAATTCTTGAAACAATGGT+TGG	-	chr4.2:35488898-35488917	None:intergenic	35.0%
	TTTGGATATGATCATCCCAT+GGG	+	chr4.2:35488938-35488957	MS.gene062964:CDS	35.0%
!	GGTTGGTTCAAGTATGATAT+TGG	-	chr4.2:35488881-35488900	None:intergenic	35.0%
	ATGTTGGAGAGAAACAGAAG+CGG	+	chr4.2:35488846-35488865	MS.gene062964:CDS	40.0%
	CATCAAGCCGAAGAAGAATT+TGG	+	chr4.2:35488920-35488939	MS.gene062964:CDS	40.0%
	GGTTATGTTGCAGTGTATGT+TGG	+	chr4.2:35488830-35488849	MS.gene062964:CDS	40.0%
	TACACTGCAACATAACCCTT+TGG	-	chr4.2:35488827-35488846	None:intergenic	40.0%
!!!	CTGCTGATTTTAGTGCTGCT+TGG	-	chr4.2:35488799-35488818	None:intergenic	45.0%
	ATGAATGGTGAGTCCACCCA+TGG	-	chr4.2:35488957-35488976	None:intergenic	50.0%
	GGATATGATCATCCCATGGG+TGG	+	chr4.2:35488941-35488960	MS.gene062964:CDS	50.0%
	TGAATGGTGAGTCCACCCAT+GGG	-	chr4.2:35488956-35488975	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	35488749	35489027	35488749	ID=MS.gene062964
chr4.2	mRNA	35488749	35489027	35488749	ID=MS.gene062964.t1;Parent=MS.gene062964
chr4.2	exon	35488749	35489027	35488749	ID=MS.gene062964.t1.exon1;Parent=MS.gene062964.t1
chr4.2	CDS	35488749	35489027	35488749	ID=cds.MS.gene062964.t1;Parent=MS.gene062964.t1

Gene Sequence	>MS.gene062964 ATGGGTTTCCGTTTAAATGTTATTCGACGGGCATCATTCACAGCTAGCCAAGCAGCACTAAAATCAGCAGAAGTTCCAAAGGGTTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTTGTCCCAATATCATACTTGAACCAACCATTGTTTCAAGAATTGCTACATCAAGCCGAAGAAGAATTTGGATATGATCATCCCATGGGTGGACTCACCATTCATTGTACTGAAGATGTCTTTCAACACATAACTTCTCACTTGAATGAGCTATGA
Protein sequence	>MS.gene062964.t1 MGFRLNVIRRASFTASQAALKSAEVPKGYVAVYVGEKQKRFVVPISYLNQPLFQELLHQAEEEFGYDHPMGGLTIHCTEDVFQHITSHLNEL